Query psy10347
Match_columns 67
No_of_seqs 72 out of 74
Neff 2.7
Searched_HMMs 46136
Date Fri Aug 16 15:37:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10347.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10347hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3561|consensus 99.6 2.5E-16 5.3E-21 130.4 4.4 41 1-41 35-75 (803)
2 PF00010 HLH: Helix-loop-helix 99.0 5.7E-10 1.2E-14 63.1 3.7 39 1-39 16-55 (55)
3 smart00353 HLH helix loop heli 99.0 1.2E-09 2.7E-14 60.4 4.3 40 1-41 11-50 (53)
4 cd00083 HLH Helix-loop-helix d 98.9 1.7E-09 3.7E-14 60.4 4.3 39 1-40 19-57 (60)
5 KOG3560|consensus 98.8 2.7E-09 5.9E-14 88.2 2.0 37 1-37 40-76 (712)
6 KOG4029|consensus 97.6 6E-05 1.3E-09 53.0 2.8 40 1-40 124-163 (228)
7 KOG3558|consensus 97.6 8.3E-05 1.8E-09 62.8 3.9 41 2-42 62-102 (768)
8 KOG4304|consensus 97.3 0.00011 2.3E-09 54.2 1.6 45 1-45 47-95 (250)
9 KOG1318|consensus 97.1 0.00054 1.2E-08 54.4 3.3 41 2-42 249-289 (411)
10 KOG3898|consensus 96.1 0.0045 9.8E-08 45.4 2.4 39 1-40 87-125 (254)
11 KOG3559|consensus 96.0 0.005 1.1E-07 50.9 2.6 38 2-39 17-54 (598)
12 KOG4395|consensus 95.4 0.026 5.6E-07 43.6 4.2 38 1-39 189-226 (285)
13 KOG3960|consensus 92.1 0.16 3.6E-06 39.3 3.1 36 2-39 134-169 (284)
14 KOG1319|consensus 91.9 0.17 3.6E-06 38.2 2.9 36 5-40 81-119 (229)
15 KOG2588|consensus 86.4 0.64 1.4E-05 40.9 2.8 40 1-43 291-330 (953)
16 PLN03217 transcription factor 77.7 2.9 6.3E-05 28.0 2.9 42 1-42 22-65 (93)
17 KOG0561|consensus 69.6 7.1 0.00015 31.4 3.7 49 1-51 75-123 (373)
18 KOG2483|consensus 62.4 12 0.00025 27.9 3.5 37 4-41 77-113 (232)
19 PF14070 YjfB_motility: Putati 57.6 8.8 0.00019 22.2 1.7 35 25-63 19-54 (57)
20 KOG3910|consensus 52.3 11 0.00024 32.1 2.2 38 1-38 541-578 (632)
21 KOG1164|consensus 51.0 28 0.0006 24.8 3.7 29 6-39 108-136 (322)
22 KOG4447|consensus 50.0 7 0.00015 28.6 0.6 38 1-40 93-130 (173)
23 PRK10828 putative oxidoreducta 45.1 16 0.00036 24.3 1.8 17 43-59 35-51 (183)
24 PF06348 DUF1059: Protein of u 41.6 36 0.00079 19.8 2.7 33 10-42 8-40 (57)
25 PF02204 VPS9: Vacuolar sortin 39.2 24 0.00053 20.9 1.7 15 25-39 89-103 (104)
26 PF02186 TFIIE_beta: TFIIE bet 34.1 36 0.00078 20.5 1.9 15 24-38 3-17 (65)
27 PF03987 Autophagy_act_C: Auto 33.2 25 0.00055 20.2 1.1 16 42-57 44-59 (62)
28 PF14512 TM1586_NiRdase: Putat 31.1 30 0.00065 25.3 1.4 19 44-62 143-161 (206)
29 PF02945 Endonuclease_7: Recom 29.8 47 0.001 20.9 1.9 15 23-37 67-81 (81)
30 PHA02694 hypothetical protein; 29.1 81 0.0018 24.5 3.5 28 3-38 131-159 (292)
31 TIGR03553 F420_FbiB_CTERM F420 28.6 46 0.001 21.8 1.8 16 43-58 31-46 (194)
32 cd02140 Nitroreductase_4 Nitro 28.4 40 0.00086 22.4 1.5 16 44-59 36-51 (192)
33 cd02148 Nitroreductase_5 Nitro 28.2 49 0.0011 21.8 1.9 16 44-59 35-50 (185)
34 COG5466 Predicted small metal- 28.1 1E+02 0.0022 19.1 3.2 34 8-41 8-41 (59)
35 PF03317 ELF: ELF protein; In 27.5 52 0.0011 25.5 2.2 23 18-40 196-218 (284)
36 PRK05365 malonic semialdehyde 25.8 53 0.0011 21.9 1.8 15 44-58 42-56 (195)
37 CHL00202 argB acetylglutamate 25.6 60 0.0013 23.6 2.1 20 21-40 4-23 (284)
38 PF14946 DUF4501: Domain of un 25.6 37 0.0008 25.1 1.1 17 6-22 136-152 (180)
39 KOG0862|consensus 25.1 45 0.00098 25.0 1.4 34 29-62 82-120 (216)
40 PF15129 FAM150: FAM150 family 24.8 97 0.0021 21.7 3.0 33 23-55 1-33 (123)
41 COG2900 SlyX Uncharacterized p 24.4 49 0.0011 21.1 1.3 46 4-52 23-70 (72)
42 PRK00329 GIY-YIG nuclease supe 23.6 96 0.0021 19.3 2.5 23 36-58 32-54 (86)
43 PF02964 MeMO_Hyd_G: Methane m 23.3 31 0.00068 25.0 0.3 30 20-49 12-41 (161)
44 cd02145 BluB Subfamily of the 22.5 72 0.0016 21.1 1.9 16 44-59 33-48 (196)
45 PF05057 DUF676: Putative seri 22.4 1.7E+02 0.0036 20.1 3.8 52 3-58 61-121 (217)
46 smart00167 VPS9 Domain present 22.2 81 0.0018 20.7 2.1 18 25-42 89-106 (117)
47 cd02135 Arsenite_oxidase Nitro 22.1 74 0.0016 19.8 1.8 15 45-59 34-48 (160)
48 cd07977 TFIIE_beta_winged_heli 21.8 84 0.0018 19.2 2.0 17 23-39 6-22 (75)
49 PF10273 WGG: Pre-rRNA-process 21.7 63 0.0014 20.0 1.4 14 22-35 10-23 (82)
50 COG5153 CVT17 Putative lipase 21.1 42 0.00092 27.4 0.7 13 55-67 331-343 (425)
51 KOG4540|consensus 21.1 42 0.00092 27.4 0.7 13 55-67 331-343 (425)
52 COG4499 Predicted membrane pro 21.1 65 0.0014 26.6 1.7 28 18-45 78-105 (434)
53 TIGR02476 BluB cob(II)yrinic a 20.5 81 0.0018 21.2 1.8 16 44-59 42-57 (205)
No 1
>KOG3561|consensus
Probab=99.62 E-value=2.5e-16 Score=130.41 Aligned_cols=41 Identities=59% Similarity=0.953 Sum_probs=40.1
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhhc
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVT 41 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~ 41 (67)
||.||+|||+|||.|..++|||||+|||||||+|||.+||.
T Consensus 35 ~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 35 MNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred HHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 79999999999999999999999999999999999999996
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=98.99 E-value=5.7e-10 Score=63.08 Aligned_cols=39 Identities=31% Similarity=0.606 Sum_probs=34.8
Q ss_pred ChHHHHHHHhcCCCC-CccCCCCcHHHHHHHHHHHHHHhh
Q psy10347 1 MTAYITELSDMVPTC-SALARKPDKLTILRMAVAHMKALR 39 (67)
Q Consensus 1 mN~~I~ELssMVP~c-~~~~RKLDKLTVLRmAV~hLk~lr 39 (67)
||..+++|.++||.| .+..+|+||.+||+.|++||+.|+
T Consensus 16 i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 16 INDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 589999999999986 356799999999999999999874
No 3
>smart00353 HLH helix loop helix domain.
Probab=98.96 E-value=1.2e-09 Score=60.44 Aligned_cols=40 Identities=30% Similarity=0.460 Sum_probs=36.5
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhhc
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVT 41 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~ 41 (67)
||..+++|.++||.|. ..+|+||.+||..|++|++.+.+.
T Consensus 11 ~n~~~~~L~~lip~~~-~~~k~~k~~iL~~ai~yi~~L~~~ 50 (53)
T smart00353 11 INEAFDELRSLLPTLP-NNKKLSKAEILRLAIEYIKSLQEE 50 (53)
T ss_pred HHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6889999999999665 789999999999999999999864
No 4
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=98.93 E-value=1.7e-09 Score=60.44 Aligned_cols=39 Identities=33% Similarity=0.452 Sum_probs=35.2
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhh
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRV 40 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg 40 (67)
||..+++|.++||.+. ...|+||.+||++|++||+.++.
T Consensus 19 ~n~~~~~L~~llp~~~-~~~k~~k~~iL~~a~~yI~~L~~ 57 (60)
T cd00083 19 INDAFDELRSLLPTLP-PSKKLSKAEILRKAVDYIKSLQE 57 (60)
T ss_pred HHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHH
Confidence 6899999999999554 67999999999999999999975
No 5
>KOG3560|consensus
Probab=98.77 E-value=2.7e-09 Score=88.24 Aligned_cols=37 Identities=27% Similarity=0.526 Sum_probs=35.7
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHH
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKA 37 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~ 37 (67)
+|++++.||+++|+.++...|||||||||++|+|||.
T Consensus 40 LNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 40 LNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRV 76 (712)
T ss_pred hhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHH
Confidence 6999999999999999999999999999999999985
No 6
>KOG4029|consensus
Probab=97.56 E-value=6e-05 Score=53.03 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=34.6
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhh
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRV 40 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg 40 (67)
.|.-..||+..||......+||.|+.+||+|+.||+-|..
T Consensus 124 vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~ 163 (228)
T KOG4029|consen 124 VNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTK 163 (228)
T ss_pred hhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHH
Confidence 4788999999999444349999999999999999998874
No 7
>KOG3558|consensus
Probab=97.55 E-value=8.3e-05 Score=62.84 Aligned_cols=41 Identities=20% Similarity=0.412 Sum_probs=37.1
Q ss_pred hHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhhcc
Q psy10347 2 TAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVTA 42 (67)
Q Consensus 2 N~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~~ 42 (67)
|-.+.||+.++|...+...-|||.+|+|+||+|||-.+=.+
T Consensus 62 n~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRlrk~a~ 102 (768)
T KOG3558|consen 62 NEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRLRKFAG 102 (768)
T ss_pred hHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 66789999999999999999999999999999999888433
No 8
>KOG4304|consensus
Probab=97.31 E-value=0.00011 Score=54.23 Aligned_cols=45 Identities=24% Similarity=0.455 Sum_probs=38.9
Q ss_pred ChHHHHHHHhcCCCCCccC----CCCcHHHHHHHHHHHHHHhhhccCCC
Q psy10347 1 MTAYITELSDMVPTCSALA----RKPDKLTILRMAVAHMKALRVTAVNT 45 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~----RKLDKLTVLRmAV~hLk~lrg~~~~~ 45 (67)
+|..++||..+||.+-... .||+|=.||-|||.|||.++......
T Consensus 47 IN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~ 95 (250)
T KOG4304|consen 47 INRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAA 95 (250)
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccccc
Confidence 5999999999999777664 89999999999999999999654433
No 9
>KOG1318|consensus
Probab=97.06 E-value=0.00054 Score=54.38 Aligned_cols=41 Identities=29% Similarity=0.488 Sum_probs=38.2
Q ss_pred hHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhhcc
Q psy10347 2 TAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVTA 42 (67)
Q Consensus 2 N~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~~ 42 (67)
|.-|.||+.|||-|....-|.-|=+||..+++|+|.|+-..
T Consensus 249 N~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~ 289 (411)
T KOG1318|consen 249 NDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTL 289 (411)
T ss_pred HHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999998643
No 10
>KOG3898|consensus
Probab=96.07 E-value=0.0045 Score=45.39 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=36.1
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhh
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRV 40 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg 40 (67)
+|..++.|.+.|| |....+||.|+..||+|-.|+.++..
T Consensus 87 LNdAld~LReviP-~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 87 LNDALDALREVIP-HGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred hhHHHHHhHhhcc-CcCCCCCCCcchhHHhhhcchhhhcc
Confidence 5999999999999 68899999999999999999998863
No 11
>KOG3559|consensus
Probab=96.01 E-value=0.005 Score=50.85 Aligned_cols=38 Identities=26% Similarity=0.419 Sum_probs=35.5
Q ss_pred hHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhh
Q psy10347 2 TAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39 (67)
Q Consensus 2 N~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lr 39 (67)
|..+-||+.++|...+....+||.||.|+|-+|||..+
T Consensus 17 N~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~ 54 (598)
T KOG3559|consen 17 NYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRN 54 (598)
T ss_pred cchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHH
Confidence 77899999999999998888999999999999999876
No 12
>KOG4395|consensus
Probab=95.35 E-value=0.026 Score=43.62 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=35.6
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhh
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lr 39 (67)
+|..+++|...|| |.+..+||.|...|.||..|+-.+-
T Consensus 189 LN~AfD~Lr~v~p-~~~~d~~LSkyetLqmaq~yi~~l~ 226 (285)
T KOG4395|consen 189 LNSAFDRLRLVVP-DGDSDKKLSKYETLQMAQGYILALG 226 (285)
T ss_pred HHHHHHHHHHhcC-CCCccchhhhhhHHHHHHHHHhhhH
Confidence 5899999999999 8889999999999999999998875
No 13
>KOG3960|consensus
Probab=92.10 E-value=0.16 Score=39.29 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=25.1
Q ss_pred hHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhh
Q psy10347 2 TAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39 (67)
Q Consensus 2 N~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lr 39 (67)
|..++-|-.= +|..-..+|-|..|||.||+||..|.
T Consensus 134 NEAFE~LKRr--T~~NPNQRLPKVEILRsAI~YIE~Lq 169 (284)
T KOG3960|consen 134 NEAFETLKRR--TSSNPNQRLPKVEILRSAIRYIERLQ 169 (284)
T ss_pred HHHHHHHHhh--cCCCccccccHHHHHHHHHHHHHHHH
Confidence 4444444332 23344689999999999999998874
No 14
>KOG1319|consensus
Probab=91.89 E-value=0.17 Score=38.23 Aligned_cols=36 Identities=28% Similarity=0.467 Sum_probs=31.5
Q ss_pred HHHHHhcCCCCCccC---CCCcHHHHHHHHHHHHHHhhh
Q psy10347 5 ITELSDMVPTCSALA---RKPDKLTILRMAVAHMKALRV 40 (67)
Q Consensus 5 I~ELssMVP~c~~~~---RKLDKLTVLRmAV~hLk~lrg 40 (67)
-+.|-.+||.|.+.. .||.|--||..|++||.-|+.
T Consensus 81 YddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~ 119 (229)
T KOG1319|consen 81 YDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHK 119 (229)
T ss_pred hHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999865 699999999999999988864
No 15
>KOG2588|consensus
Probab=86.37 E-value=0.64 Score=40.85 Aligned_cols=40 Identities=30% Similarity=0.409 Sum_probs=36.0
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhhccC
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVTAV 43 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~~~ 43 (67)
.|.=|.||..+|| +..-|+-|..|||.|++|++-+.+.+.
T Consensus 291 INDKI~eLk~lV~---g~~aKl~kSavLr~ai~~i~dl~~~nq 330 (953)
T KOG2588|consen 291 INDKIIELKDLVP---GTEAKLNKSAVLRKAIDYIEDLQGYNQ 330 (953)
T ss_pred hhHHHHHHHHhcC---ccHhhhhhhhhHHHHHHHHHHhhcccc
Confidence 3777999999999 899999999999999999999987643
No 16
>PLN03217 transcription factor ATBS1; Provisional
Probab=77.70 E-value=2.9 Score=28.04 Aligned_cols=42 Identities=14% Similarity=0.259 Sum_probs=31.4
Q ss_pred ChHHHHHHHhcCCCCCc--cCCCCcHHHHHHHHHHHHHHhhhcc
Q psy10347 1 MTAYITELSDMVPTCSA--LARKPDKLTILRMAVAHMKALRVTA 42 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~--~~RKLDKLTVLRmAV~hLk~lrg~~ 42 (67)
+|.+|..|.+++|--.. ...|-.-.-||+-+-+|+|++..+.
T Consensus 22 i~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEv 65 (93)
T PLN03217 22 INDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREV 65 (93)
T ss_pred HHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHH
Confidence 57899999999994322 1234555679999999999997653
No 17
>KOG0561|consensus
Probab=69.65 E-value=7.1 Score=31.42 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=37.7
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhhccCCCCcCCCC
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVTAVNTFRHHSQ 51 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~~~~~~~~~~~ 51 (67)
.|+=+.-|.+++| -.-..||.|-.||+-+.+|+-.|-|.-..-.+..++
T Consensus 75 INAGFqsLr~LlP--r~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll~qn~e 123 (373)
T KOG0561|consen 75 INAGFQSLRALLP--RKEGEKLSKAAILQQTADYIHQLEGHKTELLPQNGE 123 (373)
T ss_pred hhHHHHHHHHhcC--cccchhhHHHHHHHHHHHHHHHHHhcccccccccch
Confidence 3777889999999 344689999999999999999988764443333333
No 18
>KOG2483|consensus
Probab=62.42 E-value=12 Score=27.90 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhhc
Q psy10347 4 YITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVT 41 (67)
Q Consensus 4 ~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~ 41 (67)
.++.|...||.-.+ .++=+-++||+.|..|++.+.-.
T Consensus 77 ~~~~Lk~~vP~~~~-~~~~t~lsiL~kA~~~i~~l~~~ 113 (232)
T KOG2483|consen 77 CFESLKDSVPLLNG-ETRSTTLSILDKALEHIQSLERK 113 (232)
T ss_pred HHHHHHHhCCCCCC-cchhhhhHhhhhHHHHHHHHHhH
Confidence 35778899994443 44444899999999999998753
No 19
>PF14070 YjfB_motility: Putative motility protein
Probab=57.57 E-value=8.8 Score=22.21 Aligned_cols=35 Identities=20% Similarity=0.444 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhhhccCCCC-cCCCCCeeeeecccccc
Q psy10347 25 LTILRMAVAHMKALRVTAVNTF-RHHSQPWLFVHFGQNID 63 (67)
Q Consensus 25 LTVLRmAV~hLk~lrg~~~~~~-~~~~~~~~~~~~~~~~~ 63 (67)
++|||+|.+.-+..-..-.... .-+.+| |.|+|||
T Consensus 19 ~svlKkamD~~~~~~~~l~~~~~~~~~~p----~lG~~iD 54 (57)
T PF14070_consen 19 ISVLKKAMDTQEQQAQQLIEMMPEQSVPP----NLGSNID 54 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CCCcccc
Confidence 5788888877655432222222 223344 6788888
No 20
>KOG3910|consensus
Probab=52.34 E-value=11 Score=32.07 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=31.1
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHh
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKAL 38 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~l 38 (67)
.|..+.||..|.-...-..+-=.||-||-+||+-|-+|
T Consensus 541 INeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsL 578 (632)
T KOG3910|consen 541 INEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSL 578 (632)
T ss_pred HHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHH
Confidence 48899999999775555556668999999999998766
No 21
>KOG1164|consensus
Probab=50.99 E-value=28 Score=24.80 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=23.9
Q ss_pred HHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhh
Q psy10347 6 TELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39 (67)
Q Consensus 6 ~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lr 39 (67)
.+|..+.| .+|+.+-|+||.|+|=+.+++
T Consensus 108 ~dl~~~~~-----~~~fs~~T~l~ia~q~l~~l~ 136 (322)
T KOG1164|consen 108 EDLRKRNP-----PGRFSRKTVLRIAIQNLNALE 136 (322)
T ss_pred HHHHHhCC-----CCCcCHhHHHHHHHHHHHHHH
Confidence 34444544 799999999999999999997
No 22
>KOG4447|consensus
Probab=50.01 E-value=7 Score=28.63 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=31.3
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhh
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRV 40 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg 40 (67)
+|..++-|...+|+ .-.-||.|+-.|++|..|+-.+-.
T Consensus 93 Ln~AF~~lr~iipt--lPsdklSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 93 LNEAFAALRKIIPT--LPSDKLSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHHhhcCC--CCccccccccchhhcccCCchhhh
Confidence 58889999999992 235899999999999988877654
No 23
>PRK10828 putative oxidoreductase; Provisional
Probab=45.09 E-value=16 Score=24.28 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=13.2
Q ss_pred CCCCcCCCCCeeeeecc
Q psy10347 43 VNTFRHHSQPWLFVHFG 59 (67)
Q Consensus 43 ~~~~~~~~~~~~~~~~~ 59 (67)
..+..+.+|||-||...
T Consensus 35 ~APS~~N~Qpw~fvvv~ 51 (183)
T PRK10828 35 RAPDHGSLQPWRFFVIE 51 (183)
T ss_pred hCcCcCCccceEEEEEc
Confidence 45556789999999874
No 24
>PF06348 DUF1059: Protein of unknown function (DUF1059); InterPro: IPR009409 This entry consists of short hypothetical archaeal and bacterial proteins of unknown function.
Probab=41.57 E-value=36 Score=19.80 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=27.7
Q ss_pred hcCCCCCccCCCCcHHHHHHHHHHHHHHhhhcc
Q psy10347 10 DMVPTCSALARKPDKLTILRMAVAHMKALRVTA 42 (67)
Q Consensus 10 sMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~~ 42 (67)
+.+|-|.-..+=-+.=.||+.+++|++.--|..
T Consensus 8 d~g~~C~~~~~a~tedEll~~~~~Ha~~~Hg~~ 40 (57)
T PF06348_consen 8 DVGPDCGFVIRAETEDELLEAVVEHAREVHGMT 40 (57)
T ss_pred ccCCCCCeEEeeCCHHHHHHHHHHHHHHhcCCc
Confidence 567888888887788999999999999877643
No 25
>PF02204 VPS9: Vacuolar sorting protein 9 (VPS9) domain; InterPro: IPR003123 This domain is present in yeast vacuolar sorting protein 9 and other proteins.; PDB: 1TXU_A 2OT3_A 2EFD_A 2EFE_C 2EFC_C 2EFH_A.
Probab=39.23 E-value=24 Score=20.93 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhh
Q psy10347 25 LTILRMAVAHMKALR 39 (67)
Q Consensus 25 LTVLRmAV~hLk~lr 39 (67)
+|.++.|++||+++.
T Consensus 89 ltt~~aA~~~i~~~~ 103 (104)
T PF02204_consen 89 LTTFEAAVEYIQNLE 103 (104)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHcc
Confidence 688999999998763
No 26
>PF02186 TFIIE_beta: TFIIE beta subunit core domain; InterPro: IPR003166 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This entry represents the beta subunit of the transcription factor TFIIE.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005673 transcription factor TFIIE complex; PDB: 1D8K_A 1D8J_A.
Probab=34.06 E-value=36 Score=20.52 Aligned_cols=15 Identities=47% Similarity=0.363 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHh
Q psy10347 24 KLTILRMAVAHMKAL 38 (67)
Q Consensus 24 KLTVLRmAV~hLk~l 38 (67)
+.|+|-.||+|||..
T Consensus 3 ~~tql~~~VeymK~r 17 (65)
T PF02186_consen 3 KFTQLAKAVEYMKKR 17 (65)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhc
Confidence 468999999999987
No 27
>PF03987 Autophagy_act_C: Autophagocytosis associated protein, active-site domain ; InterPro: IPR007135 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes. Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The cysteine residue within the HPC motif is the putative active-site residue for recognition of the Apg5 subunit of the autophagosome complex [].; PDB: 2DYT_A.
Probab=33.16 E-value=25 Score=20.20 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=9.9
Q ss_pred cCCCCcCCCCCeeeee
Q psy10347 42 AVNTFRHHSQPWLFVH 57 (67)
Q Consensus 42 ~~~~~~~~~~~~~~~~ 57 (67)
+....+....||.+||
T Consensus 44 t~~~HP~l~~p~~~iH 59 (62)
T PF03987_consen 44 TQEEHPILGIPWYSIH 59 (62)
T ss_dssp EEEE-TTBSS-EEEE-
T ss_pred ecccCCCCCCceEEEc
Confidence 3456667889999999
No 28
>PF14512 TM1586_NiRdase: Putative TM nitroreductase; PDB: 1VKW_A.
Probab=31.13 E-value=30 Score=25.26 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=8.6
Q ss_pred CCCcCCCCCeeeeeccccc
Q psy10347 44 NTFRHHSQPWLFVHFGQNI 62 (67)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~ 62 (67)
.+.+-.+|||.|++-|.+|
T Consensus 143 APSA~N~Qpw~f~~~~~~v 161 (206)
T PF14512_consen 143 APSAMNQQPWRFVVNDGKV 161 (206)
T ss_dssp S--GGG----EEEE-SSEE
T ss_pred CcchhhcCCeEEEEECCEE
Confidence 4445568999999988665
No 29
>PF02945 Endonuclease_7: Recombination endonuclease VII; InterPro: IPR004211 This family of proteins which includes Bacteriophage T4 endonuclease VII, Mycobacteriophage D29 gene 59, and other as yet uncharacterised proteins. The T4 endonuclease VII (Endo VII) recognises a broad spectrum of DNA substrates ranging from branched DNAs to single base mismatches. The structure of this enzyme has been resolved and it was found that the monomers form an elongated, intertwined molecular dimer that exibits extreme domain swapping. Two pairs of antiparallel helices which form a novel 'four-helix cross' motif are the major dimerisation elements [].; PDB: 3GOX_A 3FC3_A 1EN7_B 1E7L_B 2QNF_A 2QNC_A 1E7D_A.
Probab=29.77 E-value=47 Score=20.86 Aligned_cols=15 Identities=27% Similarity=0.395 Sum_probs=13.4
Q ss_pred cHHHHHHHHHHHHHH
Q psy10347 23 DKLTILRMAVAHMKA 37 (67)
Q Consensus 23 DKLTVLRmAV~hLk~ 37 (67)
|-...||.|++||++
T Consensus 67 D~~~~L~~a~~YLe~ 81 (81)
T PF02945_consen 67 DNPEFLRRAIDYLEK 81 (81)
T ss_dssp THHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhC
Confidence 788999999999974
No 30
>PHA02694 hypothetical protein; Provisional
Probab=29.13 E-value=81 Score=24.55 Aligned_cols=28 Identities=32% Similarity=0.560 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCCCCccCCCCcHHHHHH-HHHHHHHHh
Q psy10347 3 AYITELSDMVPTCSALARKPDKLTILR-MAVAHMKAL 38 (67)
Q Consensus 3 ~~I~ELssMVP~c~~~~RKLDKLTVLR-mAV~hLk~l 38 (67)
.+++|.|++-| =|.+|.|| ||.+|-|..
T Consensus 131 ~lleefsalcp--------gdqitalrcmaasfyrd~ 159 (292)
T PHA02694 131 QLLEEFSALCP--------GDQITALRCMAASFYRDA 159 (292)
T ss_pred HHHHHHHccCC--------cchHHHHHHHHHHHHhhh
Confidence 57899999998 38899999 788887654
No 31
>TIGR03553 F420_FbiB_CTERM F420 biosynthesis protein FbiB, C-terminal domain. Coenzyme F420 differs between the Archaea and the Actinobacteria, where the numbers of glutamate residues attached are 2 (Archaea) or 5-6 (Mycobacterium). The enzyme in the Archaea is homologous to the N-terminal domain of FbiB from Mycobacterium bovis, and is responsible for glutamate ligation. Therefore it seems likely that the C-terminal domain of FbiB, modeled by this alignment, is involved in additional glutamate ligation.
Probab=28.55 E-value=46 Score=21.83 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=12.5
Q ss_pred CCCCcCCCCCeeeeec
Q psy10347 43 VNTFRHHSQPWLFVHF 58 (67)
Q Consensus 43 ~~~~~~~~~~~~~~~~ 58 (67)
..+..+..|||-||..
T Consensus 31 ~APS~~n~Qpw~fvvv 46 (194)
T TIGR03553 31 TAPAPHHTRPVRFVWV 46 (194)
T ss_pred hCCCCCCCCCeEEEEE
Confidence 3455577999999987
No 32
>cd02140 Nitroreductase_4 Nitroreductase-like family 4. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=28.45 E-value=40 Score=22.39 Aligned_cols=16 Identities=19% Similarity=-0.110 Sum_probs=11.4
Q ss_pred CCCcCCCCCeeeeecc
Q psy10347 44 NTFRHHSQPWLFVHFG 59 (67)
Q Consensus 44 ~~~~~~~~~~~~~~~~ 59 (67)
.+..+.+|||-|+-..
T Consensus 36 APS~~N~QPW~f~Vv~ 51 (192)
T cd02140 36 SPSSFNSQSSRAVILF 51 (192)
T ss_pred CCCCCCCCCeEEEEEE
Confidence 3444679999997654
No 33
>cd02148 Nitroreductase_5 Nitroreductase-like family 5. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=28.17 E-value=49 Score=21.84 Aligned_cols=16 Identities=31% Similarity=0.297 Sum_probs=11.8
Q ss_pred CCCcCCCCCeeeeecc
Q psy10347 44 NTFRHHSQPWLFVHFG 59 (67)
Q Consensus 44 ~~~~~~~~~~~~~~~~ 59 (67)
.+..+..|||-||..-
T Consensus 35 APS~~N~Qpw~fvvV~ 50 (185)
T cd02148 35 GPTAANSQPARFVFVR 50 (185)
T ss_pred CCCCCCCCCeEEEEEE
Confidence 4445678999998763
No 34
>COG5466 Predicted small metal-binding protein [Function unknown]
Probab=28.05 E-value=1e+02 Score=19.14 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=28.4
Q ss_pred HHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhhc
Q psy10347 8 LSDMVPTCSALARKPDKLTILRMAVAHMKALRVT 41 (67)
Q Consensus 8 LssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~ 41 (67)
-++++|-|.=.+|-=+-=.|+|..+.|+|.--|.
T Consensus 8 C~slg~~C~f~~~a~~~~Ev~~~iv~H~k~~Hg~ 41 (59)
T COG5466 8 CGSLGMGCGFEARADSEAEVMRRIVEHAKEAHGE 41 (59)
T ss_pred ccccCCCCcceeccCcHHHHHHHHHHHHHHhcCC
Confidence 4688999998888666778999999999987663
No 35
>PF03317 ELF: ELF protein; InterPro: IPR004990 This is a family of hypothetical proteins from cereal crops.
Probab=27.52 E-value=52 Score=25.55 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=19.7
Q ss_pred cCCCCcHHHHHHHHHHHHHHhhh
Q psy10347 18 LARKPDKLTILRMAVAHMKALRV 40 (67)
Q Consensus 18 ~~RKLDKLTVLRmAV~hLk~lrg 40 (67)
..+-.|-+||||.|-|+|+...|
T Consensus 196 ~i~atD~fsiLqAaYQdLrene~ 218 (284)
T PF03317_consen 196 HIHATDSFSILQAAYQDLRENEE 218 (284)
T ss_pred hhcccccHHHHHHHHHHHHhcCC
Confidence 35678899999999999998865
No 36
>PRK05365 malonic semialdehyde reductase; Provisional
Probab=25.80 E-value=53 Score=21.93 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=11.2
Q ss_pred CCCcCCCCCeeeeec
Q psy10347 44 NTFRHHSQPWLFVHF 58 (67)
Q Consensus 44 ~~~~~~~~~~~~~~~ 58 (67)
.+.....|||-||-.
T Consensus 42 APS~~N~QPw~fvvv 56 (195)
T PRK05365 42 GPTSANCSPARFVFV 56 (195)
T ss_pred CCCcCCCCCeEEEEE
Confidence 344466899999876
No 37
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=25.59 E-value=60 Score=23.61 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=17.7
Q ss_pred CCcHHHHHHHHHHHHHHhhh
Q psy10347 21 KPDKLTILRMAVAHMKALRV 40 (67)
Q Consensus 21 KLDKLTVLRmAV~hLk~lrg 40 (67)
+..+..+||-|..|++.+||
T Consensus 4 ~~~~~~~~~~~~pyi~~~~~ 23 (284)
T CHL00202 4 NDERVQVLSEALPYIQKFRG 23 (284)
T ss_pred hHHHHHHHHHHHHHHHHHcC
Confidence 34788999999999999997
No 38
>PF14946 DUF4501: Domain of unknown function (DUF4501)
Probab=25.55 E-value=37 Score=25.07 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=14.8
Q ss_pred HHHHhcCCCCCccCCCC
Q psy10347 6 TELSDMVPTCSALARKP 22 (67)
Q Consensus 6 ~ELssMVP~c~~~~RKL 22 (67)
.|-|+|||..++.-||+
T Consensus 136 ~EaAaMIPpp~~svrkP 152 (180)
T PF14946_consen 136 SEAAAMIPPPQSSVRKP 152 (180)
T ss_pred cchhcccCCCCCCCCCc
Confidence 47899999988888987
No 39
>KOG0862|consensus
Probab=25.10 E-value=45 Score=24.99 Aligned_cols=34 Identities=21% Similarity=0.459 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhhccCCCCc----C-CCCCeeeeeccccc
Q psy10347 29 RMAVAHMKALRVTAVNTFR----H-HSQPWLFVHFGQNI 62 (67)
Q Consensus 29 RmAV~hLk~lrg~~~~~~~----~-~~~~~~~~~~~~~~ 62 (67)
++|-+||..+..+..++|. . .+-|+-|+-|+.-|
T Consensus 82 kLAF~YLedL~~EF~~~~~~~~~~~~~RPY~FieFD~~I 120 (216)
T KOG0862|consen 82 KLAFSYLEDLAQEFDKSYGKNIIQPASRPYAFIEFDTFI 120 (216)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCccCCCeeEEehhHHH
Confidence 5799999999877655443 3 78899999998544
No 40
>PF15129 FAM150: FAM150 family
Probab=24.82 E-value=97 Score=21.69 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCCcCCCCCeee
Q psy10347 23 DKLTILRMAVAHMKALRVTAVNTFRHHSQPWLF 55 (67)
Q Consensus 23 DKLTVLRmAV~hLk~lrg~~~~~~~~~~~~~~~ 55 (67)
|+-|+||+-|+-++.++..-..+.+.+.+|+..
T Consensus 1 d~~tLLrLIveiiqelkk~~~~es~r~~~~L~~ 33 (123)
T PF15129_consen 1 DRQTLLRLIVEIIQELKKYHSGESKRHEQGLQS 33 (123)
T ss_pred ChhhHHHHHHHHHHHHHHhhcccccCCcccccc
Confidence 677999999999999887767777776666643
No 41
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.38 E-value=49 Score=21.14 Aligned_cols=46 Identities=28% Similarity=0.374 Sum_probs=33.0
Q ss_pred HHHHHHhcCCCCCccCCCCcHHHH-HHHHHHHHHHhhhccCCCCcC-CCCC
Q psy10347 4 YITELSDMVPTCSALARKPDKLTI-LRMAVAHMKALRVTAVNTFRH-HSQP 52 (67)
Q Consensus 4 ~I~ELssMVP~c~~~~RKLDKLTV-LRmAV~hLk~lrg~~~~~~~~-~~~~ 52 (67)
.|+||+.+|- ..-.-+||+.. ||.-+.=++.+++.+..+.++ +.||
T Consensus 23 tieeLn~~la---Eq~~~i~k~q~qlr~L~~kl~~~~~~~~~~~~~etpPP 70 (72)
T COG2900 23 TIEELNDALA---EQQLVIDKLQAQLRLLTEKLKDLQPSAIASPAEETPPP 70 (72)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcccccCCCcccCCCC
Confidence 5788888876 45556777764 677788888888877666666 5555
No 42
>PRK00329 GIY-YIG nuclease superfamily protein; Validated
Probab=23.60 E-value=96 Score=19.29 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=15.8
Q ss_pred HHhhhccCCCCcCCCCCeeeeec
Q psy10347 36 KALRVTAVNTFRHHSQPWLFVHF 58 (67)
Q Consensus 36 k~lrg~~~~~~~~~~~~~~~~~~ 58 (67)
+.|+......|+...+||-.|++
T Consensus 32 ~qH~~g~ga~~tr~~~p~~Lv~~ 54 (86)
T PRK00329 32 AQHQSGKGAKYTRGRPPLTLVFV 54 (86)
T ss_pred HHHHcCCCCCCccCCCceEEEEE
Confidence 34444344568889999987776
No 43
>PF02964 MeMO_Hyd_G: Methane monooxygenase, hydrolase gamma chain; InterPro: IPR004222 Methane monooxygenases (1.14.13.25 from EC) catalyse the oxidation of methane to methanol in the presence of oxygen and NADH in methanotrophs. It has a broad specificity, hydroxylating many alkanes, and converting alkenes into the corresponding epoxides. In additional reactions, CO is oxidized to CO2, ammonia is oxidized to hydroxylamine, and some aromatic compounds and cyclic alkanes can also be hydroxylated, although more slowly. In Methylococcus capsulatus there are two forms of the enzyme, a soluble and a membrane-bound type. The soluble form consists of 3 components, A, B and C. Protein A is made up of 3 chains, alpha, beta and gamma. This entry represents the gamma chain of methane monooxygenases. Structurally, the gamma chain contains two domains, each consisting of a three helices arranged in an open bundle topology [, ]. ; GO: 0015049 methane monooxygenase activity, 0015947 methane metabolic process; PDB: 1FZ1_E 1FZ4_F 1XU3_E 1FZ7_F 1XVB_F 1FZ3_E 1XMG_E 1FZI_F 1XVD_F 1FZ2_E ....
Probab=23.32 E-value=31 Score=25.05 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=21.9
Q ss_pred CCCcHHHHHHHHHHHHHHhhhccCCCCcCC
Q psy10347 20 RKPDKLTILRMAVAHMKALRVTAVNTFRHH 49 (67)
Q Consensus 20 RKLDKLTVLRmAV~hLk~lrg~~~~~~~~~ 49 (67)
.|..+|+.|+.|+++|+..|..-.++|.-+
T Consensus 12 ~Kia~L~tl~~a~a~l~~fR~~~t~pfr~s 41 (161)
T PF02964_consen 12 AKIAALSTLDEATAFLQDFRADHTSPFRTS 41 (161)
T ss_dssp HHHCT--SHHHHHHHHHHHHHHHSSTT-S-
T ss_pred HHHHHHhhHHHHHHHHHHHHHHcCCccccc
Confidence 477889999999999999998776766543
No 44
>cd02145 BluB Subfamily of the nitroreductase family that includes BluB protein in Rhodobacter capsulatus is involved in the conversion of cobinamide to cobalamin in Cobalamin (vitamin B12) biosynthesis. Nitroreductases typically reduce their substrates by using NAD(P)H as electron donor and often use FMN as a cofactor.
Probab=22.47 E-value=72 Score=21.10 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=12.0
Q ss_pred CCCcCCCCCeeeeecc
Q psy10347 44 NTFRHHSQPWLFVHFG 59 (67)
Q Consensus 44 ~~~~~~~~~~~~~~~~ 59 (67)
.+.....|||-|+..-
T Consensus 33 APS~~N~Qpw~fvVv~ 48 (196)
T cd02145 33 APSVGLSQPWRFIRVR 48 (196)
T ss_pred CCCcCCCCCeEEEEEc
Confidence 4446679999999873
No 45
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=22.43 E-value=1.7e+02 Score=20.10 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCCCCccCCCCcHHH---------HHHHHHHHHHHhhhccCCCCcCCCCCeeeeec
Q psy10347 3 AYITELSDMVPTCSALARKPDKLT---------ILRMAVAHMKALRVTAVNTFRHHSQPWLFVHF 58 (67)
Q Consensus 3 ~~I~ELssMVP~c~~~~RKLDKLT---------VLRmAV~hLk~lrg~~~~~~~~~~~~~~~~~~ 58 (67)
.+++||.+.+- ....+..|++ |.|.|+.++...+.. ...+-..-.|..|+-|
T Consensus 61 rL~~eI~~~~~---~~~~~~~~IsfIgHSLGGli~r~al~~~~~~~~~-~~~~~~~~~~~~fitl 121 (217)
T PF05057_consen 61 RLAEEILEHIK---DYESKIRKISFIGHSLGGLIARYALGLLHDKPQY-FPGFFQKIKPHNFITL 121 (217)
T ss_pred HHHHHHHHhcc---ccccccccceEEEecccHHHHHHHHHHhhhcccc-ccccccceeeeeEEEe
Confidence 35677777776 4444455665 789999999877642 1112223356666533
No 46
>smart00167 VPS9 Domain present in VPS9. Domain present in yeast vacuolar sorting protein 9 and other proteins.
Probab=22.16 E-value=81 Score=20.68 Aligned_cols=18 Identities=39% Similarity=0.379 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhhhcc
Q psy10347 25 LTILRMAVAHMKALRVTA 42 (67)
Q Consensus 25 LTVLRmAV~hLk~lrg~~ 42 (67)
+|-|..|++||+++.+..
T Consensus 89 lT~l~aAv~fi~~l~~~~ 106 (117)
T smart00167 89 LTSLSAALALIKGLTEAH 106 (117)
T ss_pred HHHHHHHHHHHHHCCHHh
Confidence 789999999999998643
No 47
>cd02135 Arsenite_oxidase Nitroreductase-like family which includes NADH oxidase and arsenite oxidiase. NADH oxidase catalyses the oxidation of NAD(P)H and accepts a wide broad range of compounds as electron acceptors, such as nitrocompound. Arsenite oxidase in a beta-proteobacterial strain is able to oxidize arsenite to arsenate.
Probab=22.08 E-value=74 Score=19.77 Aligned_cols=15 Identities=20% Similarity=0.505 Sum_probs=10.8
Q ss_pred CCcCCCCCeeeeecc
Q psy10347 45 TFRHHSQPWLFVHFG 59 (67)
Q Consensus 45 ~~~~~~~~~~~~~~~ 59 (67)
+..+..|||-|+...
T Consensus 34 Ps~~n~Qpw~f~vv~ 48 (160)
T cd02135 34 PDHGKLEPWRFIVIR 48 (160)
T ss_pred CCcCCccCeEEEEEe
Confidence 345678999888764
No 48
>cd07977 TFIIE_beta_winged_helix TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity. Transcription Factor IIE (TFIIE) beta winged-helix (or forkhead) domain is located at the central core region of TFIIE beta. The winged-helix is a form of helix-turn-helix (HTH) domain which typically binds DNA with the 3rd helix. The winged-helix domain is distinguished by the presence of a C-terminal beta-strand hairpin unit (the wing) that packs against the cleft of the tri-helical core. Although most winged-helix domains are multi-member families, TFIIE beta winged-helix domain is typically found as a single orthologous group. TFIIE is one of the six eukaryotic general transcription factors (TFIIA, TFIIB, TFIID, TFIIE, TFIIF and TFIIH) that are required for transcription initiation of protein-coding genes. TFIIE is a heterotetramer consisting of two copies each of alpha and beta subunits. TFIIE beta contains several functional
Probab=21.81 E-value=84 Score=19.24 Aligned_cols=17 Identities=29% Similarity=0.176 Sum_probs=14.4
Q ss_pred cHHHHHHHHHHHHHHhh
Q psy10347 23 DKLTILRMAVAHMKALR 39 (67)
Q Consensus 23 DKLTVLRmAV~hLk~lr 39 (67)
.+.|+|=.||+|||..-
T Consensus 6 ~~~t~l~~aV~ymK~r~ 22 (75)
T cd07977 6 HVFTQLAKIVDYMKKRH 22 (75)
T ss_pred chhhhHHHHHHHHHhcC
Confidence 46789999999999875
No 49
>PF10273 WGG: Pre-rRNA-processing protein TSR2; InterPro: IPR019398 The pre-rRNA-processing protein TSR2 is required for 20S pre-rRNA processing []. This family contains a distinctive WGG motif.
Probab=21.74 E-value=63 Score=19.97 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=11.2
Q ss_pred CcHHHHHHHHHHHH
Q psy10347 22 PDKLTILRMAVAHM 35 (67)
Q Consensus 22 LDKLTVLRmAV~hL 35 (67)
|+.=|.||+||+|-
T Consensus 10 l~~WtaL~lAVen~ 23 (82)
T PF10273_consen 10 LNRWTALQLAVENG 23 (82)
T ss_pred HhcCHHHHHHHHhc
Confidence 55668999999874
No 50
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=21.14 E-value=42 Score=27.39 Aligned_cols=13 Identities=62% Similarity=1.101 Sum_probs=11.2
Q ss_pred eeecccccccccC
Q psy10347 55 FVHFGQNIDSIFR 67 (67)
Q Consensus 55 ~~~~~~~~~~~~~ 67 (67)
..|||.|-|-|||
T Consensus 331 iwHfGhnaDpif~ 343 (425)
T COG5153 331 IWHFGHNADPIFR 343 (425)
T ss_pred eEEeccCCCceEe
Confidence 5699999999986
No 51
>KOG4540|consensus
Probab=21.14 E-value=42 Score=27.39 Aligned_cols=13 Identities=62% Similarity=1.101 Sum_probs=11.2
Q ss_pred eeecccccccccC
Q psy10347 55 FVHFGQNIDSIFR 67 (67)
Q Consensus 55 ~~~~~~~~~~~~~ 67 (67)
..|||.|-|-|||
T Consensus 331 iwHfGhnaDpif~ 343 (425)
T KOG4540|consen 331 IWHFGHNADPIFR 343 (425)
T ss_pred eEEeccCCCceEe
Confidence 5699999999986
No 52
>COG4499 Predicted membrane protein [Function unknown]
Probab=21.06 E-value=65 Score=26.59 Aligned_cols=28 Identities=21% Similarity=0.301 Sum_probs=23.4
Q ss_pred cCCCCcHHHHHHHHHHHHHHhhhccCCC
Q psy10347 18 LARKPDKLTILRMAVAHMKALRVTAVNT 45 (67)
Q Consensus 18 ~~RKLDKLTVLRmAV~hLk~lrg~~~~~ 45 (67)
..|+++|..-||.|.+-++.+.+-...-
T Consensus 78 ~~k~~~k~~Klr~a~~~I~~l~e~~~tr 105 (434)
T COG4499 78 SAKRKEKTRKLRLALQNIATLSELNNTR 105 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4689999999999999999998765543
No 53
>TIGR02476 BluB cob(II)yrinic acid a,c-diamide reductase. The BluB protein is related to the nitroreductase family (pfam0881), and is found to substitute for the FldA cobalt reductase in aerobic species (by phylogenetic profiling). BluB is also found to be preceded by B12 promoter elements elements. The gene in R. capsulatus has been shown to be essential for cobalamin biosynthesis.
Probab=20.46 E-value=81 Score=21.20 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=12.0
Q ss_pred CCCcCCCCCeeeeecc
Q psy10347 44 NTFRHHSQPWLFVHFG 59 (67)
Q Consensus 44 ~~~~~~~~~~~~~~~~ 59 (67)
.+..+..|||-||...
T Consensus 42 APS~~n~Qpw~fvvv~ 57 (205)
T TIGR02476 42 APSVGFSQPWRFVRVE 57 (205)
T ss_pred CCCcCCCCCeEEEEEc
Confidence 4445678999999874
Done!