Query psy10347
Match_columns 67
No_of_seqs 72 out of 74
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 15:38:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10347.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10347hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h10_A ARYL hydrocarbon recept 99.3 2E-13 6.8E-18 83.8 1.9 42 1-42 24-65 (73)
2 4f3l_B BMAL1B; BHLH, PAS, circ 99.3 2.8E-13 9.5E-18 97.5 2.2 42 1-42 28-69 (387)
3 4h10_B Circadian locomoter out 99.2 1.1E-11 3.8E-16 76.2 4.3 38 1-41 23-60 (71)
4 4f3l_A Mclock, circadian locom 99.1 4.6E-11 1.6E-15 84.6 4.5 38 1-41 27-64 (361)
5 1an4_A Protein (upstream stimu 99.0 6.8E-11 2.3E-15 68.9 0.6 41 1-41 20-62 (65)
6 4ati_A MITF, microphthalmia-as 98.8 2.4E-09 8.2E-14 69.6 4.1 41 1-41 42-82 (118)
7 1nkp_B MAX protein, MYC proto- 98.8 3.5E-09 1.2E-13 64.1 3.6 39 1-41 17-55 (83)
8 2lfh_A DNA-binding protein inh 98.8 5.4E-09 1.8E-13 64.6 4.3 39 1-40 29-67 (68)
9 1hlo_A Protein (transcription 98.8 4.2E-09 1.5E-13 63.6 3.4 39 1-41 27-65 (80)
10 2ql2_B Neurod1, neurogenic dif 98.7 1.3E-08 4.6E-13 60.0 4.4 39 1-40 17-55 (60)
11 1am9_A Srebp-1A, protein (ster 98.7 8.7E-09 3E-13 63.0 3.5 38 1-41 21-58 (82)
12 1a0a_A BHLH, protein (phosphat 98.7 3.9E-09 1.3E-13 62.6 1.3 41 1-41 17-60 (63)
13 1mdy_A Protein (MYOD BHLH doma 98.6 4.2E-08 1.4E-12 59.3 4.3 38 1-40 27-64 (68)
14 3u5v_A Protein MAX, transcript 98.5 3.1E-08 1E-12 60.9 1.3 41 1-41 20-60 (76)
15 4aya_A DNA-binding protein inh 98.4 1.8E-07 6.3E-12 60.7 4.3 40 1-41 40-79 (97)
16 1nkp_A C-MYC, MYC proto-oncoge 98.4 2.8E-07 9.4E-12 57.3 3.7 40 1-41 21-60 (88)
17 4ath_A MITF, microphthalmia-as 98.3 6.8E-07 2.3E-11 56.8 5.1 40 2-41 8-47 (83)
18 1nlw_A MAD protein, MAX dimeri 98.1 2.4E-06 8.3E-11 52.4 3.9 40 1-41 16-55 (80)
19 3kqg_A Langerin, C-type lectin 63.3 3 0.0001 25.9 1.4 29 7-38 3-31 (182)
20 3muj_A Transcription factor CO 52.9 25 0.00085 23.8 4.7 37 5-41 100-136 (138)
21 3dka_A DINB-like protein; DINB 50.1 9.3 0.00032 22.4 2.0 53 7-59 101-155 (155)
22 2v5h_A Acetylglutamate kinase; 41.7 16 0.00056 25.8 2.5 19 22-40 31-49 (321)
23 3d2m_A Putative acetylglutamat 35.8 25 0.00087 25.2 2.7 31 11-41 14-44 (456)
24 2bty_A Acetylglutamate kinase; 30.1 21 0.00071 24.3 1.4 19 22-40 3-21 (282)
25 3igm_B PF14_0633 protein; AP2 28.0 45 0.0015 20.7 2.6 29 23-51 43-72 (77)
26 2buf_A Acetylglutamate kinase; 27.2 37 0.0013 23.4 2.3 18 23-40 9-26 (300)
27 1yk0_E Atrial natriuretic fact 26.3 18 0.00063 18.5 0.5 8 58-65 3-10 (26)
28 1yk1_E Natriuretic peptides B; 25.7 19 0.00065 18.5 0.4 8 58-65 3-10 (26)
29 1ssz_A Pulmonary surfactant-as 24.8 44 0.0015 18.0 1.8 16 3-18 6-21 (34)
30 2ns5_A Partitioning-defective 24.2 27 0.00092 21.6 1.0 8 50-57 44-51 (85)
31 1nox_A NADH oxidase; flavoenzy 23.3 43 0.0015 20.6 1.9 16 44-59 43-58 (205)
32 3ge6_A Nitroreductase; structu 22.1 47 0.0016 20.7 1.9 16 43-58 43-58 (212)
33 2rd5_A Acetylglutamate kinase- 21.9 46 0.0016 22.9 1.9 22 19-40 15-36 (298)
34 3k6h_A Nitroreductase family p 21.5 59 0.002 20.4 2.3 17 43-59 45-61 (197)
35 3gr3_A Nitroreductase; structu 21.3 45 0.0015 21.3 1.7 16 43-58 41-56 (230)
36 1ywq_A Nitroreductase family p 21.2 51 0.0018 20.0 1.9 15 44-58 42-56 (200)
37 2wqf_A Copper induced nitrored 20.7 46 0.0016 20.2 1.6 15 44-58 37-51 (202)
38 3gag_A Putative NADH dehydroge 20.0 55 0.0019 20.3 1.9 15 44-58 40-54 (206)
No 1
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.35 E-value=2e-13 Score=83.79 Aligned_cols=42 Identities=60% Similarity=0.931 Sum_probs=38.8
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhhcc
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVTA 42 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~~ 42 (67)
+|..|+||++|||.|....+|+||.+||++||+||+.+++..
T Consensus 24 IN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~~ 65 (73)
T 4h10_A 24 MNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGAW 65 (73)
T ss_dssp HHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcCc
Confidence 589999999999999888899999999999999999999853
No 2
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.33 E-value=2.8e-13 Score=97.54 Aligned_cols=42 Identities=60% Similarity=0.964 Sum_probs=39.1
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhhcc
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVTA 42 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~~ 42 (67)
+|.+|+||++|||.|....+||||++|||+||+|||.++|..
T Consensus 28 ~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~~ 69 (387)
T 4f3l_B 28 MNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGAT 69 (387)
T ss_dssp HHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhccc
Confidence 599999999999999989999999999999999999999754
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.21 E-value=1.1e-11 Score=76.25 Aligned_cols=38 Identities=32% Similarity=0.497 Sum_probs=35.3
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhhc
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVT 41 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~ 41 (67)
+|..|.||++||| +..+|+||.+||++||+||+.+++.
T Consensus 23 IN~~i~eL~~LvP---~~~~K~dK~sIL~~aI~yik~Lq~~ 60 (71)
T 4h10_B 23 FNVLIKELGSMLP---GNARKMDKSTVLQKSIDFLRKHKEI 60 (71)
T ss_dssp HHHHHHHHHTTSS---SCCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC---CCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 5999999999999 5678999999999999999999975
No 4
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.12 E-value=4.6e-11 Score=84.61 Aligned_cols=38 Identities=34% Similarity=0.524 Sum_probs=35.4
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhhc
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVT 41 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~ 41 (67)
+|.+|.||++||| +..+||||.+|||+||+|||.++..
T Consensus 27 ~n~~~~~l~~~~p---~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 27 FNVLIKELGSMLP---GNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp HHHHHHHHHHTCC---SSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC---CCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 5999999999999 6789999999999999999999864
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=98.98 E-value=6.8e-11 Score=68.93 Aligned_cols=41 Identities=27% Similarity=0.383 Sum_probs=36.7
Q ss_pred ChHHHHHHHhcCCCCCccC--CCCcHHHHHHHHHHHHHHhhhc
Q psy10347 1 MTAYITELSDMVPTCSALA--RKPDKLTILRMAVAHMKALRVT 41 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~--RKLDKLTVLRmAV~hLk~lrg~ 41 (67)
||..|.+|.++||.|.... .|+||.+||++||+||+.|+..
T Consensus 20 in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~ 62 (65)
T 1an4_A 20 INNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQS 62 (65)
T ss_dssp HHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 5899999999999888753 5899999999999999999865
No 6
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=98.84 E-value=2.4e-09 Score=69.65 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=34.4
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhhc
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVT 41 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~ 41 (67)
+|..|.+|.++||.|.....|+||.+||++||+||+.|+..
T Consensus 42 In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~ 82 (118)
T 4ati_A 42 INDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQRE 82 (118)
T ss_dssp HHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHH
Confidence 48899999999999988889999999999999999999753
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=98.80 E-value=3.5e-09 Score=64.08 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=34.7
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhhc
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVT 41 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~ 41 (67)
||..+++|.++||.|. ..|+||.+||++|++||+.+...
T Consensus 17 in~~f~~Lr~lvP~~~--~~k~sK~~iL~~Ai~YI~~L~~~ 55 (83)
T 1nkp_B 17 IKDSFHSLRDSVPSLQ--GEKASRAQILDKATEYIQYMRRK 55 (83)
T ss_dssp HHHHHHHHHTTSGGGT--TSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHHHHHHH
Confidence 5889999999999654 58999999999999999999853
No 8
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.79 E-value=5.4e-09 Score=64.65 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=35.1
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhh
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRV 40 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg 40 (67)
||..+++|..+||. .+..+||.|+.+||+|++||+.|..
T Consensus 29 lN~aF~~LR~~VP~-~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 29 MNHCYSRLRELVPG-VPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp HHHHHHHHHHHCCC-CCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCC-CCCCCCccHHHHHHHHHHHHHHHHc
Confidence 58999999999995 4577999999999999999999864
No 9
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=98.78 E-value=4.2e-09 Score=63.63 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=34.5
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhhc
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVT 41 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~ 41 (67)
||..+++|.++||.|. ..|++|.+||++|++||+.|...
T Consensus 27 in~~f~~Lr~lvP~~~--~~k~sK~~iL~~Ai~YI~~L~~~ 65 (80)
T 1hlo_A 27 IKDSFHSLRDSVPSLQ--GEKASRAQILDKATEYIQYMRRK 65 (80)
T ss_dssp HHHHHHHHHHHSGGGT--TSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCC--CCCccHHHHHHHHHHHHHHHHHH
Confidence 5889999999999655 47999999999999999999853
No 10
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.73 E-value=1.3e-08 Score=60.02 Aligned_cols=39 Identities=28% Similarity=0.365 Sum_probs=34.9
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhh
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRV 40 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg 40 (67)
+|..+++|..+||. .+..+||.|+.+||+|++||+.|..
T Consensus 17 iN~af~~LR~~lP~-~~~~~klSKi~tLr~Ai~YI~~L~~ 55 (60)
T 2ql2_B 17 LNAALDNLRKVVPC-YSKTQKLSKIETLRLAKNYIWALSE 55 (60)
T ss_dssp HHHHHHHHHHTSSS-CCSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC-CCCcCcCCHHHHHHHHHHHHHHHHH
Confidence 58999999999994 4568999999999999999999874
No 11
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=98.71 E-value=8.7e-09 Score=63.05 Aligned_cols=38 Identities=29% Similarity=0.386 Sum_probs=34.2
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhhc
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVT 41 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~ 41 (67)
||..|.+|.++||. ...|+||.+||+.||+||+.|+..
T Consensus 21 in~~f~~L~~lvP~---~~~k~~Ka~IL~~Ai~YI~~Lq~~ 58 (82)
T 1am9_A 21 INDKIIELKDLVVG---TEAKLNKSAVLRKAIDYIRFLQHS 58 (82)
T ss_dssp HHHHHHHHHHHHTC---SSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC---CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 58899999999994 468999999999999999999863
No 12
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=98.69 E-value=3.9e-09 Score=62.62 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=36.3
Q ss_pred ChHHHHHHHhcCCCCCcc---CCCCcHHHHHHHHHHHHHHhhhc
Q psy10347 1 MTAYITELSDMVPTCSAL---ARKPDKLTILRMAVAHMKALRVT 41 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~---~RKLDKLTVLRmAV~hLk~lrg~ 41 (67)
+|..+++|.++||.|... ..|++|-+||.+||+||+.|+..
T Consensus 17 In~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~ 60 (63)
T 1a0a_A 17 LAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQN 60 (63)
T ss_dssp HHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence 589999999999977554 58999999999999999999853
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.61 E-value=4.2e-08 Score=59.31 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=34.1
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhh
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRV 40 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg 40 (67)
+|..+++|.++||.+. .+||+|+.|||+|++||..|..
T Consensus 27 iN~af~~LR~~iP~~~--~~KlSKi~tLr~Ai~YI~~L~~ 64 (68)
T 1mdy_A 27 VNEAFETLKRSTSSNP--NQRLPKVEILRNAIRYIEGLQA 64 (68)
T ss_dssp HHHHHHHHHTTSCSCT--TSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCC--CCCCCHHHHHHHHHHHHHHHHH
Confidence 5889999999999643 6899999999999999999874
No 14
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=98.49 E-value=3.1e-08 Score=60.86 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=35.7
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhhc
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVT 41 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~ 41 (67)
+|..+++|+.+||.|....+++.|.+||+.|++||+.|+..
T Consensus 20 IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~ 60 (76)
T 3u5v_A 20 INEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQ 60 (76)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHH
Confidence 48899999999997766677779999999999999999753
No 15
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.45 E-value=1.8e-07 Score=60.75 Aligned_cols=40 Identities=23% Similarity=0.446 Sum_probs=35.4
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhhc
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVT 41 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~ 41 (67)
+|..+++|...||. .+..+||.|+.+||+|++|++.|...
T Consensus 40 lN~AF~~LR~~vP~-~p~~kKLSKIETLRlAi~YI~~Lq~~ 79 (97)
T 4aya_A 40 MNDCYSKLKELVPS-IPQNKKVSKMEILQHVIDYILDLQIA 79 (97)
T ss_dssp HHHHHHHHHHHCTT-SCSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 58999999999994 45679999999999999999998743
No 16
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=98.38 E-value=2.8e-07 Score=57.31 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=34.5
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhhc
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVT 41 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~ 41 (67)
+|..+.+|.++||.+. ...|+||.+||+.|+.||+.|...
T Consensus 21 ln~~f~~Lr~~vP~~~-~~~K~sK~~iL~~A~~YI~~L~~~ 60 (88)
T 1nkp_A 21 LKRSFFALRDQIPELE-NNEKAPKVVILKKATAYILSVQAE 60 (88)
T ss_dssp HHHHHHHHHTTCGGGT-TCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5889999999999543 357999999999999999999753
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.35 E-value=6.8e-07 Score=56.84 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=37.3
Q ss_pred hHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhhc
Q psy10347 2 TAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVT 41 (67)
Q Consensus 2 N~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~ 41 (67)
|.-|.||+.+||-|++...|..|-+||+.||+|++.|+..
T Consensus 8 N~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e 47 (83)
T 4ath_A 8 NDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQRE 47 (83)
T ss_dssp HHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHH
Confidence 7789999999999988889999999999999999999864
No 18
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=98.12 E-value=2.4e-06 Score=52.44 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=34.7
Q ss_pred ChHHHHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhhc
Q psy10347 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVT 41 (67)
Q Consensus 1 mN~~I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~ 41 (67)
||..+++|.++||.+. ...|++|++||+.|+.||+.++..
T Consensus 16 lk~~f~~Lr~~vP~~~-~~~k~sk~~iL~kA~~yI~~L~~~ 55 (80)
T 1nlw_A 16 LRLSLEKLKGLVPLGP-DSSRHTTLSLLTKAKLHIKKLEDS 55 (80)
T ss_dssp HHHHHHHHHHSSCCCS-SSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCC-CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5788999999999553 468999999999999999999753
No 19
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=63.26 E-value=3 Score=25.86 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=16.9
Q ss_pred HHHhcCCCCCccCCCCcHHHHHHHHHHHHHHh
Q psy10347 7 ELSDMVPTCSALARKPDKLTILRMAVAHMKAL 38 (67)
Q Consensus 7 ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~l 38 (67)
.|++-|+ ...+.+|+++.|+..|+.|++-
T Consensus 3 ~l~~~~~---~l~~~~~~~~~l~~~~~~l~~~ 31 (182)
T 3kqg_A 3 TLNAQIP---ELKSDLEKASALNTKIRALQGS 31 (182)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777 8889999999999999988763
No 20
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=52.94 E-value=25 Score=23.78 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=33.1
Q ss_pred HHHHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhhc
Q psy10347 5 ITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVT 41 (67)
Q Consensus 5 I~ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~ 41 (67)
+++|..+||-..+-..+|-|--||+.|.+..+++-|.
T Consensus 100 fqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~~~~ 136 (138)
T 3muj_A 100 FQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGM 136 (138)
T ss_dssp HHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHHHCC
T ss_pred hhhhccccCCCCCChhhhhHHHHHHHHHHHHHHHhCC
Confidence 5789999998888889999999999999999988653
No 21
>3dka_A DINB-like protein; DINB/YFIT-like putative metalloenzyme fold, structural genom joint center for structural genomics, JCSG; 2.30A {Bacillus subtilis}
Probab=50.11 E-value=9.3 Score=22.43 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=34.6
Q ss_pred HHHhcCCCCCccCCCCcHHHHHHHHHHHHHHhhhccC--CCCcCCCCCeeeeecc
Q psy10347 7 ELSDMVPTCSALARKPDKLTILRMAVAHMKALRVTAV--NTFRHHSQPWLFVHFG 59 (67)
Q Consensus 7 ELssMVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~~~--~~~~~~~~~~~~~~~~ 59 (67)
+|...++......+......+|...+.|-.-|+|--. -.-.+..+|=+||..|
T Consensus 101 ~L~~~~~~~~~~g~~~t~~~~l~~~~~H~~hH~GQi~~~lr~~g~~~p~~~~~~~ 155 (155)
T 3dka_A 101 QLDREIDLTSAFGRKVTGRALLQLAMEHEIHHKGNLFVYVREMGHTELPFYQQRM 155 (155)
T ss_dssp HHHSEEC---CCSSCEEHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCSSCCC
T ss_pred HHcCcccccccCCccccHHHHHHHHHhHHHHhHHHHHHHHHHcCCCCCcceeeCC
Confidence 3555565432234578899999999999999998543 2224556777777665
No 22
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=41.68 E-value=16 Score=25.81 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=17.6
Q ss_pred CcHHHHHHHHHHHHHHhhh
Q psy10347 22 PDKLTILRMAVAHMKALRV 40 (67)
Q Consensus 22 LDKLTVLRmAV~hLk~lrg 40 (67)
.+|..+||.|..|++.+|+
T Consensus 31 ~~~~~~~~~a~pyi~~~~~ 49 (321)
T 2v5h_A 31 ADRVRILSEALPYLQQFAG 49 (321)
T ss_dssp CCHHHHHHHTHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHHhCC
Confidence 3899999999999999986
No 23
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=35.84 E-value=25 Score=25.22 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=18.3
Q ss_pred cCCCCCccCCCCcHHHHHHHHHHHHHHhhhc
Q psy10347 11 MVPTCSALARKPDKLTILRMAVAHMKALRVT 41 (67)
Q Consensus 11 MVP~c~~~~RKLDKLTVLRmAV~hLk~lrg~ 41 (67)
+||--+.|..-.+|..+||.|..|++.+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~ 44 (456)
T 3d2m_A 14 LVPRGSHMNAPDSFVAHFREAAPYIRQMRGT 44 (456)
T ss_dssp -----------CCHHHHHHHHHHHHHHHTTC
T ss_pred cCcCcccCCchhHHHHHHHHhHHHHHHhcCC
Confidence 3443334433358999999999999999973
No 24
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=30.12 E-value=21 Score=24.27 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=17.2
Q ss_pred CcHHHHHHHHHHHHHHhhh
Q psy10347 22 PDKLTILRMAVAHMKALRV 40 (67)
Q Consensus 22 LDKLTVLRmAV~hLk~lrg 40 (67)
.+|..+||.|..|++.+++
T Consensus 3 ~~~~~~~~~~~pyi~~~~~ 21 (282)
T 2bty_A 3 IDTVNVLLEALPYIKEFYG 21 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHhcC
Confidence 5788999999999999985
No 25
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=28.00 E-value=45 Score=20.73 Aligned_cols=29 Identities=28% Similarity=0.104 Sum_probs=16.9
Q ss_pred cHHHHHHHHHHHHHHhhhccC-CCCcCCCC
Q psy10347 23 DKLTILRMAVAHMKALRVTAV-NTFRHHSQ 51 (67)
Q Consensus 23 DKLTVLRmAV~hLk~lrg~~~-~~~~~~~~ 51 (67)
|+..-..+|++|+|.+-..+- ..-++.||
T Consensus 43 ~~e~Ak~~AIef~k~le~~Gr~~~~~g~~~ 72 (77)
T 3igm_B 43 DKEKARLAAVEFMKTVENNGRKKLEPGGSQ 72 (77)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCCC-------
T ss_pred CHHHHHHHHHHHHHHHHhcCceecCCCCce
Confidence 457889999999999975433 22334444
No 26
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=27.24 E-value=37 Score=23.45 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=16.9
Q ss_pred cHHHHHHHHHHHHHHhhh
Q psy10347 23 DKLTILRMAVAHMKALRV 40 (67)
Q Consensus 23 DKLTVLRmAV~hLk~lrg 40 (67)
||..+||.|..|++.+++
T Consensus 9 ~~~~~~~~a~pyi~~~~~ 26 (300)
T 2buf_A 9 QVAKVLSEALPYIRRFVG 26 (300)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHHHhcC
Confidence 889999999999999986
No 27
>1yk0_E Atrial natriuretic factor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, hormone-growth factor receptor complex; HET: NAG; 2.40A {Homo sapiens} PDB: 1t34_H*
Probab=26.29 E-value=18 Score=18.55 Aligned_cols=8 Identities=50% Similarity=0.995 Sum_probs=6.8
Q ss_pred cccccccc
Q psy10347 58 FGQNIDSI 65 (67)
Q Consensus 58 ~~~~~~~~ 65 (67)
||+.||.|
T Consensus 3 FG~riDRI 10 (26)
T 1yk0_E 3 FGGRMDRI 10 (26)
T ss_dssp TCSCCCCC
T ss_pred cCcccccc
Confidence 88888876
No 28
>1yk1_E Natriuretic peptides B; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, hormone-growth factor receptor complex; HET: NAG; 2.90A {Homo sapiens}
Probab=25.73 E-value=19 Score=18.50 Aligned_cols=8 Identities=50% Similarity=1.120 Sum_probs=6.7
Q ss_pred cccccccc
Q psy10347 58 FGQNIDSI 65 (67)
Q Consensus 58 ~~~~~~~~ 65 (67)
||+.||.|
T Consensus 3 FG~riDRI 10 (26)
T 1yk1_E 3 FGRKMDRI 10 (26)
T ss_dssp TCSCCSSC
T ss_pred cCcccccc
Confidence 88888876
No 29
>1ssz_A Pulmonary surfactant-associated protein B; LUNG surfactant protein, saposin, surface active protein; NMR {Synthetic}
Probab=24.85 E-value=44 Score=17.97 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=13.0
Q ss_pred HHHHHHHhcCCCCCcc
Q psy10347 3 AYITELSDMVPTCSAL 18 (67)
Q Consensus 3 ~~I~ELssMVP~c~~~ 18 (67)
++|..+-+|||-|..+
T Consensus 6 ~likriqa~ipk~grm 21 (34)
T 1ssz_A 6 ALIKRIQAMIPKGGRM 21 (34)
T ss_dssp HHHHHHHHHCSSSCCC
T ss_pred HHHHHHHHHccccchh
Confidence 6899999999977544
No 30
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=24.20 E-value=27 Score=21.64 Aligned_cols=8 Identities=38% Similarity=0.908 Sum_probs=6.9
Q ss_pred CCCeeeee
Q psy10347 50 SQPWLFVH 57 (67)
Q Consensus 50 ~~~~~~~~ 57 (67)
.+.|..||
T Consensus 44 ~~~~v~V~ 51 (85)
T 2ns5_A 44 PNYWIQVH 51 (85)
T ss_dssp TTSCEEEE
T ss_pred CCcEEEEE
Confidence 67799999
No 31
>1nox_A NADH oxidase; flavoenzyme, flavoprotein FMN, oxidoreductase, thermophIle; HET: FMN; 1.59A {Thermus thermophilus} SCOP: d.90.1.1
Probab=23.34 E-value=43 Score=20.57 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=11.9
Q ss_pred CCCcCCCCCeeeeecc
Q psy10347 44 NTFRHHSQPWLFVHFG 59 (67)
Q Consensus 44 ~~~~~~~~~~~~~~~~ 59 (67)
.+..+..|||-|+-..
T Consensus 43 APS~~n~qpw~f~vv~ 58 (205)
T 1nox_A 43 APSAWNLQPWRIVVVR 58 (205)
T ss_dssp CCCGGGCCCEEEEEEC
T ss_pred CcCcCCccceEEEEEc
Confidence 4456789999998653
No 32
>3ge6_A Nitroreductase; structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: FMN; 1.85A {Exiguobacterium sibiricum 255-15} SCOP: d.90.1.0
Probab=22.09 E-value=47 Score=20.72 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=11.8
Q ss_pred CCCCcCCCCCeeeeec
Q psy10347 43 VNTFRHHSQPWLFVHF 58 (67)
Q Consensus 43 ~~~~~~~~~~~~~~~~ 58 (67)
..+.....|||-|+-.
T Consensus 43 ~APS~~N~Qpw~f~vv 58 (212)
T 3ge6_A 43 LAPSSVNMQPWRFLVI 58 (212)
T ss_dssp TSCCGGGCCCEEEEEE
T ss_pred HCcCcCCCCCEEEEEE
Confidence 3455668899999765
No 33
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=21.86 E-value=46 Score=22.90 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=17.7
Q ss_pred CCCCcHHHHHHHHHHHHHHhhh
Q psy10347 19 ARKPDKLTILRMAVAHMKALRV 40 (67)
Q Consensus 19 ~RKLDKLTVLRmAV~hLk~lrg 40 (67)
+...+|..+||.|..|++.+|+
T Consensus 15 ~~~~~~~~~~~~a~pyi~~~~~ 36 (298)
T 2rd5_A 15 PSPDYRVEILSESLPFIQKFRG 36 (298)
T ss_dssp ---CHHHHHHHHTHHHHHHTTT
T ss_pred CChHHHHHHHHHHHHHHHHhcC
Confidence 3567899999999999999985
No 34
>3k6h_A Nitroreductase family protein; APC5990, agrobacterium tumefaciens ST structural genomics, PSI-2, protein structure initiative; HET: FMN; 3.05A {Agrobacterium tumefaciens str}
Probab=21.54 E-value=59 Score=20.38 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=12.1
Q ss_pred CCCCcCCCCCeeeeecc
Q psy10347 43 VNTFRHHSQPWLFVHFG 59 (67)
Q Consensus 43 ~~~~~~~~~~~~~~~~~ 59 (67)
..+..+..|||-|+-..
T Consensus 45 ~APS~~n~Qpw~f~vv~ 61 (197)
T 3k6h_A 45 RVPDHGKLAPWRFVVYR 61 (197)
T ss_dssp CSCCTTSCCCEEEEEEE
T ss_pred hCcCcCCCcCeEEEEEc
Confidence 34556689999997653
No 35
>3gr3_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: MSE FMN UNL; 1.45A {Bartonella henselae str}
Probab=21.30 E-value=45 Score=21.31 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=11.8
Q ss_pred CCCCcCCCCCeeeeec
Q psy10347 43 VNTFRHHSQPWLFVHF 58 (67)
Q Consensus 43 ~~~~~~~~~~~~~~~~ 58 (67)
..+..+..|||-|+-.
T Consensus 41 ~APS~~N~Qpw~fiVv 56 (230)
T 3gr3_A 41 RAPSGTNLQPWQVIVL 56 (230)
T ss_dssp TSCCGGGCCCCEEEEE
T ss_pred hCcCcCCCCCeEEEEE
Confidence 3556678999999764
No 36
>1ywq_A Nitroreductase family protein; FMN, structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: FMN; 2.30A {Bacillus cereus atcc 14579} SCOP: d.90.1.1
Probab=21.21 E-value=51 Score=19.98 Aligned_cols=15 Identities=13% Similarity=-0.020 Sum_probs=10.9
Q ss_pred CCCcCCCCCeeeeec
Q psy10347 44 NTFRHHSQPWLFVHF 58 (67)
Q Consensus 44 ~~~~~~~~~~~~~~~ 58 (67)
.+..+..|||-|+-.
T Consensus 42 APS~~n~Qpw~f~vv 56 (200)
T 1ywq_A 42 APTSFNMQSGRMVVL 56 (200)
T ss_dssp SCCGGGCCCEEEEEE
T ss_pred CCCCCCCCCeEEEEE
Confidence 444567899999764
No 37
>2wqf_A Copper induced nitroreductase D; COPR regulated protein, oxidoreductase; HET: FMN; 1.35A {Lactococcus lactis}
Probab=20.67 E-value=46 Score=20.17 Aligned_cols=15 Identities=13% Similarity=0.040 Sum_probs=10.7
Q ss_pred CCCcCCCCCeeeeec
Q psy10347 44 NTFRHHSQPWLFVHF 58 (67)
Q Consensus 44 ~~~~~~~~~~~~~~~ 58 (67)
.+..+..|||-|+-.
T Consensus 37 APS~~n~Qpw~f~vv 51 (202)
T 2wqf_A 37 SPTAFNSQTGRLLIL 51 (202)
T ss_dssp SCCGGGCCCEEEEEE
T ss_pred CCCccCCCCeEEEEE
Confidence 334567899998765
No 38
>3gag_A Putative NADH dehydrogenase, NADPH nitroreductase; FMN-dependent nitroreductase-like fold, structural genomics; HET: MSE FMN; 1.70A {Streptococcus mutans} SCOP: d.90.1.0
Probab=20.05 E-value=55 Score=20.30 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=11.1
Q ss_pred CCCcCCCCCeeeeec
Q psy10347 44 NTFRHHSQPWLFVHF 58 (67)
Q Consensus 44 ~~~~~~~~~~~~~~~ 58 (67)
.+..+..|||-|+-.
T Consensus 40 APS~~n~Qpw~f~vv 54 (206)
T 3gag_A 40 APSGNNFQPWRVVVV 54 (206)
T ss_dssp SCCGGGCCCEEEEEE
T ss_pred CCCCCCCCCeEEEEE
Confidence 455567899999765
Done!