RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10347
         (67 letters)



>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 65

 Score = 36.3 bits (84), Expect = 1e-05
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 1  MTAYITELSDMVPTCSALAR--KPDKLTILRMAVAHMKALR 39
          +  +I +LS ++P  S  +      K  IL  A  +++ LR
Sbjct: 20 INNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELR 60


>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 61

 Score = 35.1 bits (81), Expect = 3e-05
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 1  MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39
          +   I EL D+V    A   K  K  +LR A+ ++K L+
Sbjct: 4  INDKIIELKDLVMGTDA---KMHKSGVLRKAIDYIKYLQ 39


>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 79

 Score = 34.1 bits (78), Expect = 1e-04
 Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 1  MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39
          +   + +L  +VP     + +   L++L  A  H+K L 
Sbjct: 16 LRLSLEKLKGLVPLGPD-SSRHTTLSLLTKAKLHIKKLE 53


>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 63

 Score = 32.5 bits (74), Expect = 4e-04
 Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 1  MTAYITELSDMVPTCS---ALARKPDKLTILRMAVAHMKALR 39
          +   + EL+ ++P       ++  P K T +  A  +++ L+
Sbjct: 17 LAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQ 58


>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 83

 Score = 32.9 bits (75), Expect = 4e-04
 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 1  MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39
          +      L D VP+      K  +  IL  A  +++ +R
Sbjct: 17 IKDSFHSLRDSVPSLQG--EKASRAQILDKATEYIQYMR 53


>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 80

 Score = 31.5 bits (71), Expect = 0.001
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 1  MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39
          +   I EL D+V        K +K  +LR A+ +++ L+
Sbjct: 21 INDKIIELKDLVVGTE---AKLNKSAVLRKAIDYIRFLQ 56


>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 68

 Score = 30.6 bits (69), Expect = 0.002
 Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 1  MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39
          +      L     +     ++  K+ ILR A+ +++ L+
Sbjct: 27 VNEAFETLKRSTSSNPN--QRLPKVEILRNAIRYIEGLQ 63


>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 88

 Score = 29.9 bits (67), Expect = 0.006
 Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 1  MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39
          +      L D +P       K  K+ IL+ A A++ +++
Sbjct: 21 LKRSFFALRDQIPELEN-NEKAPKVVILKKATAYILSVQ 58


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.134    0.414 

Gapped
Lambda     K      H
   0.267   0.0580    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 241,301
Number of extensions: 7980
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 9
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.2 bits)