BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10348
(291 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 405 bits (1041), Expect = e-113, Method: Compositional matrix adjust.
Identities = 179/283 (63%), Positives = 230/283 (81%), Gaps = 2/283 (0%)
Query: 10 EENFYTCAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDF 69
+ENFYTCAW+ D + PLLAVAGSR +IRI +P C++H+ GHG+AINELKFHP+D
Sbjct: 105 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP 164
Query: 70 NLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLW 129
NLLLSVSKDH LRLWNI+TD +AIFGGVEGHRDEVLSAD+DLLG KIMSCGMDHSLKLW
Sbjct: 165 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 224
Query: 130 DLTKPEIKDACAESYTFNPARSTRPFDTQKEHFPQFSTRDIHRNYVDCVRWLGDFVLSKS 189
+ + +A ESY +NP ++ RPF +QK HFP FSTRDIHRNYVDCVRWLGD +LSKS
Sbjct: 225 RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKS 284
Query: 190 CENCIICWKPGRLED--KELRTNETNVTIINRLNFKDCEIWFIRFSMDYWQKILAVGNQS 247
CEN I+CWKPG++ED +++ +E+NVTI+ R ++ C+IW++RFSMD+WQK+LA+GNQ
Sbjct: 285 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQV 344
Query: 248 GRTYVWDLDVQDPSSIKFQILSHPRCMSAVRQTTLSKNGNVLL 290
G+ YVWDL+V+DP K L+H +C +A+RQT+ S++ ++L+
Sbjct: 345 GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILI 387
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 179/283 (63%), Positives = 230/283 (81%), Gaps = 2/283 (0%)
Query: 10 EENFYTCAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDF 69
+ENFYTCAW+ D + PLLAVAGSR +IRI +P C++H+ GHG+AINELKFHP+D
Sbjct: 69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP 128
Query: 70 NLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLW 129
NLLLSVSKDH LRLWNI+TD +AIFGGVEGHRDEVLSAD+DLLG KIMSCGMDHSLKLW
Sbjct: 129 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 188
Query: 130 DLTKPEIKDACAESYTFNPARSTRPFDTQKEHFPQFSTRDIHRNYVDCVRWLGDFVLSKS 189
+ + +A ESY +NP ++ RPF +QK HFP FSTRDIHRNYVDCVRWLGD +LSKS
Sbjct: 189 RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKS 248
Query: 190 CENCIICWKPGRLED--KELRTNETNVTIINRLNFKDCEIWFIRFSMDYWQKILAVGNQS 247
CEN I+CWKPG++ED +++ +E+NVTI+ R ++ C+IW++RFSMD+WQK+LA+GNQ
Sbjct: 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQV 308
Query: 248 GRTYVWDLDVQDPSSIKFQILSHPRCMSAVRQTTLSKNGNVLL 290
G+ YVWDL+V+DP K L+H +C +A+RQT+ S++ ++L+
Sbjct: 309 GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILI 351
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 404 bits (1039), Expect = e-113, Method: Compositional matrix adjust.
Identities = 179/283 (63%), Positives = 230/283 (81%), Gaps = 2/283 (0%)
Query: 10 EENFYTCAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDF 69
+ENFYTCAW+ D + PLLAVAGSR +IRI +P C++H+ GHG+AINELKFHP+D
Sbjct: 68 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP 127
Query: 70 NLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLW 129
NLLLSVSKDH LRLWNI+TD +AIFGGVEGHRDEVLSAD+DLLG KIMSCGMDHSLKLW
Sbjct: 128 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
Query: 130 DLTKPEIKDACAESYTFNPARSTRPFDTQKEHFPQFSTRDIHRNYVDCVRWLGDFVLSKS 189
+ + +A ESY +NP ++ RPF +QK HFP FSTRDIHRNYVDCVRWLGD +LSKS
Sbjct: 188 RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKS 247
Query: 190 CENCIICWKPGRLED--KELRTNETNVTIINRLNFKDCEIWFIRFSMDYWQKILAVGNQS 247
CEN I+CWKPG++ED +++ +E+NVTI+ R ++ C+IW++RFSMD+WQK+LA+GNQ
Sbjct: 248 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQV 307
Query: 248 GRTYVWDLDVQDPSSIKFQILSHPRCMSAVRQTTLSKNGNVLL 290
G+ YVWDL+V+DP K L+H +C +A+RQT+ S++ ++L+
Sbjct: 308 GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILI 350
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 404 bits (1039), Expect = e-113, Method: Compositional matrix adjust.
Identities = 179/283 (63%), Positives = 230/283 (81%), Gaps = 2/283 (0%)
Query: 10 EENFYTCAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDF 69
+ENFYTCAW+ D + PLLAVAGSR +IRI +P C++H+ GHG+AINELKFHP+D
Sbjct: 64 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP 123
Query: 70 NLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLW 129
NLLLSVSKDH LRLWNI+TD +AIFGGVEGHRDEVLSAD+DLLG KIMSCGMDHSLKLW
Sbjct: 124 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 183
Query: 130 DLTKPEIKDACAESYTFNPARSTRPFDTQKEHFPQFSTRDIHRNYVDCVRWLGDFVLSKS 189
+ + +A ESY +NP ++ RPF +QK HFP FSTRDIHRNYVDCVRWLGD +LSKS
Sbjct: 184 RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKS 243
Query: 190 CENCIICWKPGRLED--KELRTNETNVTIINRLNFKDCEIWFIRFSMDYWQKILAVGNQS 247
CEN I+CWKPG++ED +++ +E+NVTI+ R ++ C+IW++RFSMD+WQK+LA+GNQ
Sbjct: 244 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQV 303
Query: 248 GRTYVWDLDVQDPSSIKFQILSHPRCMSAVRQTTLSKNGNVLL 290
G+ YVWDL+V+DP K L+H +C +A+RQT+ S++ ++L+
Sbjct: 304 GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILI 346
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 402 bits (1033), Expect = e-112, Method: Compositional matrix adjust.
Identities = 178/283 (62%), Positives = 229/283 (80%), Gaps = 2/283 (0%)
Query: 10 EENFYTCAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDF 69
+ENFYTCAW+ D + PLLAVAGSR +IRI +P C++H+ GHG+AINELKFHP+D
Sbjct: 68 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP 127
Query: 70 NLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLW 129
NLLLSVSKDH LRLWNI+TD +AIFGGVEGHRDEVLSAD+DLLG KIMSCGMDHSLKLW
Sbjct: 128 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
Query: 130 DLTKPEIKDACAESYTFNPARSTRPFDTQKEHFPQFSTRDIHRNYVDCVRWLGDFVLSKS 189
+ + +A ESY +NP ++ RPF +QK HFP FSTRDIHRNYVDCVRWLGD +LSKS
Sbjct: 188 RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKS 247
Query: 190 CENCIICWKPGRLED--KELRTNETNVTIINRLNFKDCEIWFIRFSMDYWQKILAVGNQS 247
CEN I+CWKPG++ED +++ +E+NVTI+ R ++ C+IW++RFS D+WQK+LA+GNQ
Sbjct: 248 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSTDFWQKMLALGNQV 307
Query: 248 GRTYVWDLDVQDPSSIKFQILSHPRCMSAVRQTTLSKNGNVLL 290
G+ YVWDL+V+DP K L+H +C +A+RQT+ S++ ++L+
Sbjct: 308 GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILI 350
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Query: 24 SGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRL 83
SG+ LLA + I+++ C+R +GH H ++ + P + + ++S S+D T+++
Sbjct: 161 SGK-LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKM 218
Query: 84 WNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAE 142
W ++T C+ F GHR+ V + GT I SC D ++++W + E K E
Sbjct: 219 WEVQTGYCVKTF---TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 274
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLL 113
GH + + FHP F++++S S+D T+++W+ +T ++GH D V FD
Sbjct: 106 GHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETG---DFERTLKGHTDSVQDISFDHS 161
Query: 114 GTKIMSCGMDHSLKLWDL 131
G + SC D ++KLWD
Sbjct: 162 GKLLASCSADMTIKLWDF 179
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 23 ESGRP-LLAVAGSR-AVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHT 80
+SG+P ++GSR I+++ + C+ GH + + + FH +LS + D T
Sbjct: 303 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG-KFILSCADDKT 361
Query: 81 LRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
LR+W+ K C+ H V S DF +++ +D ++K+W+
Sbjct: 362 LRVWDYKNKRCMKTLN---AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 28 LLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDF------------------ 69
L+A + +R++ A C H H + + + P+
Sbjct: 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 307
Query: 70 -NLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKL 128
LLS S+D T+++W++ T +C+ GH + V F G I+SC D +L++
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTL---VGHDNWVRGVLFHSGGKFILSCADDKTLRV 364
Query: 129 WD 130
WD
Sbjct: 365 WD 366
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 17 AWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVS 76
AWS D LL A ++I+ + C++ GH + + F+PQ NL++S S
Sbjct: 75 AWSSDSN----LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGS 129
Query: 77 KDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
D ++R+W++KT +C+ + H D V + F+ G+ I+S D ++WD
Sbjct: 130 FDESVRIWDVKTGMCLKT---LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 29 LAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKT 88
LA + + +I+I+ + GH I+++ + D NLL+S S D TL++W++ +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSS 99
Query: 89 DICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
C+ ++GH + V +F+ I+S D S+++WD+
Sbjct: 100 GKCLKT---LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 46 HACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNI-KTDICIAIFGGVEGHRDE 104
+A + GH A++ +KF P L S S D +++W I G G D
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 105 VLSADFDLLGTKIMSCGMDHSLKLWDLT 132
S+D +LL +S D +LK+WD++
Sbjct: 75 AWSSDSNLL----VSASDDKTLKIWDVS 98
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 17 AWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVS 76
AWS D LL A ++I+ + C++ GH + + F+PQ NL++S S
Sbjct: 75 AWSSDSN----LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGS 129
Query: 77 KDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
D ++R+W++KT +C+ + H D V + F+ G+ I+S D ++WD
Sbjct: 130 FDESVRIWDVKTGMCLKT---LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 29 LAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKT 88
LA + + +I+I+ + GH I+++ + D NLL+S S D TL++W++ +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSS 99
Query: 89 DICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
C+ ++GH + V +F+ I+S D S+++WD+
Sbjct: 100 GKCLKT---LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 46 HACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNI-KTDICIAIFGGVEGHRDE 104
+A + GH A++ +KF P L S S D +++W I G G D
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 105 VLSADFDLLGTKIMSCGMDHSLKLWDLT 132
S+D +LL +S D +LK+WD++
Sbjct: 75 AWSSDSNLL----VSASDDKTLKIWDVS 98
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 17 AWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVS 76
AWS D LL A ++I+ + C++ GH + + F+PQ NL++S S
Sbjct: 96 AWSSDSN----LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGS 150
Query: 77 KDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
D ++R+W++KT C+ H D V + F+ G+ I+S D ++WD
Sbjct: 151 FDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 29 LAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKT 88
LA + + +I+I+ + GH I+++ + D NLL+S S D TL++W++ +
Sbjct: 62 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSS 120
Query: 89 DICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
C+ +GH + V +F+ I+S D S+++WD+
Sbjct: 121 GKCLKTL---KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNI-KTDICIAIFGGVEGHRDEVLSADFDL 112
GH A++ +KF P L S S D +++W I G G D S+D +L
Sbjct: 45 GHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 103
Query: 113 LGTKIMSCGMDHSLKLWDLT 132
L +S D +LK+WD++
Sbjct: 104 L----VSASDDKTLKIWDVS 119
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 17 AWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVS 76
AWS D LL A ++I+ + C++ GH + + F+PQ NL++S S
Sbjct: 94 AWSSDSN----LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGS 148
Query: 77 KDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
D ++R+W++KT C+ H D V + F+ G+ I+S D ++WD
Sbjct: 149 FDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 29 LAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKT 88
LA + + +I+I+ + GH I+++ + D NLL+S S D TL++W++ +
Sbjct: 60 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSS 118
Query: 89 DICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
C+ +GH + V +F+ I+S D S+++WD+
Sbjct: 119 GKCLKTL---KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNI-KTDICIAIFGGVEGHRDEVLSADFDL 112
GH A++ +KF P L S S D +++W I G G D S+D +L
Sbjct: 43 GHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 101
Query: 113 LGTKIMSCGMDHSLKLWDLT 132
L +S D +LK+WD++
Sbjct: 102 L----VSASDDKTLKIWDVS 117
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 17 AWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVS 76
AWS D LL A ++I+ + C++ GH + + F+PQ NL++S S
Sbjct: 78 AWSSDSN----LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGS 132
Query: 77 KDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
D ++R+W++KT C+ + H D V + F+ G+ I+S D ++WD
Sbjct: 133 FDESVRIWDVKTGKCLKT---LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 29 LAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKT 88
LA + + +I+I+ + GH I+++ + D NLL+S S D TL++W++ +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSS 102
Query: 89 DICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
C+ ++GH + V +F+ I+S D S+++WD+
Sbjct: 103 GKCLKT---LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNI-KTDICIAIFGGVEGHRDEVLSADFDL 112
GH A++ +KF P L S S D +++W I G G D S+D +L
Sbjct: 27 GHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 85
Query: 113 LGTKIMSCGMDHSLKLWDLT 132
L +S D +LK+WD++
Sbjct: 86 L----VSASDDKTLKIWDVS 101
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 17 AWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVS 76
AWS D LL A ++I+ + C++ GH + + F+PQ NL++S S
Sbjct: 89 AWSSDSN----LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGS 143
Query: 77 KDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
D ++R+W++KT C+ + H D V + F+ G+ I+S D ++WD
Sbjct: 144 FDESVRIWDVKTGKCLKT---LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 194
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 29 LAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKT 88
LA + + +I+I+ + GH I+++ + D NLL+S S D TL++W++ +
Sbjct: 55 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSS 113
Query: 89 DICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
C+ ++GH + V +F+ I+S D S+++WD+
Sbjct: 114 GKCLKT---LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 23 ESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLR 82
SGR L G+++ P + A GH A++ +KF P L S S D ++
Sbjct: 8 SSGRENLYFQGTQSKPTPVKPNY-ALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIK 65
Query: 83 LWNI-KTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLT 132
+W I G G D S+D +LL +S D +LK+WD++
Sbjct: 66 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLL----VSASDDKTLKIWDVS 112
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 17 AWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVS 76
AWS D LL A ++I+ + C++ GH + + F+PQ NL++S S
Sbjct: 73 AWSSDSN----LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGS 127
Query: 77 KDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
D ++R+W++KT C+ + H D V + F+ G+ I+S D ++WD
Sbjct: 128 FDESVRIWDVKTGKCLKT---LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 178
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 29 LAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKT 88
LA + + +I+I+ + GH I+++ + D NLL+S S D TL++W++ +
Sbjct: 39 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSS 97
Query: 89 DICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
C+ ++GH + V +F+ I+S D S+++WD+
Sbjct: 98 GKCLKT---LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNI-KTDICIAIFGGVEGHRDEVLSADFDL 112
GH A++ +KF P L S S D +++W I G G D S+D +L
Sbjct: 22 GHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 80
Query: 113 LGTKIMSCGMDHSLKLWDLT 132
L +S D +LK+WD++
Sbjct: 81 L----VSASDDKTLKIWDVS 96
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 17 AWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVS 76
AWS D LL A ++I+ + C++ GH + + F+PQ NL++S S
Sbjct: 72 AWSSDSN----LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGS 126
Query: 77 KDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
D ++R+W++KT C+ + H D V + F+ G+ I+S D ++WD
Sbjct: 127 FDESVRIWDVKTGKCLKT---LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 29 LAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKT 88
LA + + +I+I+ + GH I+++ + D NLL+S S D TL++W++ +
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSS 96
Query: 89 DICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
C+ ++GH + V +F+ I+S D S+++WD+
Sbjct: 97 GKCLKT---LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNI-KTDICIAIFGGVEGHRDEVLSADFDL 112
GH A++ +KF P L S S D +++W I G G D S+D +L
Sbjct: 21 GHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 79
Query: 113 LGTKIMSCGMDHSLKLWDLT 132
L +S D +LK+WD++
Sbjct: 80 L----VSASDDKTLKIWDVS 95
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 17 AWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVS 76
AWS D LL A ++I+ + C++ GH + + F+PQ NL++S S
Sbjct: 78 AWSSDSN----LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGS 132
Query: 77 KDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
D ++R+W++KT C+ + H D V + F+ G+ I+S D ++WD
Sbjct: 133 FDESVRIWDVKTGKCLKT---LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 29 LAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKT 88
LA + + +I+I+ + GH I+++ + D NLL+S S D TL++W++ +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSS 102
Query: 89 DICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
C+ ++GH + V +F+ I+S D S+++WD+
Sbjct: 103 GKCLKT---LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNI-KTDICIAIFGGVEGHRDEVLSADFDL 112
GH A++ +KF P L S S D +++W I G G D S+D +L
Sbjct: 27 GHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 85
Query: 113 LGTKIMSCGMDHSLKLWDLT 132
L +S D +LK+WD++
Sbjct: 86 L----VSASDDKTLKIWDVS 101
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 17 AWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVS 76
AWS D LL A ++I+ + C++ GH + + F+PQ NL++S S
Sbjct: 68 AWSSDSN----LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGS 122
Query: 77 KDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
D ++R+W++KT C+ + H D V + F+ G+ I+S D ++WD
Sbjct: 123 FDESVRIWDVKTGKCLKT---LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 173
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 29 LAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKT 88
LA + + +I+I+ + GH I+++ + D NLL+S S D TL++W++ +
Sbjct: 34 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSS 92
Query: 89 DICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
C+ ++GH + V +F+ I+S D S+++WD+
Sbjct: 93 GKCLKT---LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNI-KTDICIAIFGGVEGHRDEVLSADFDL 112
GH A++ +KF P L S S D +++W I G G D S+D +L
Sbjct: 17 GHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 75
Query: 113 LGTKIMSCGMDHSLKLWDLT 132
L +S D +LK+WD++
Sbjct: 76 L----VSASDDKTLKIWDVS 91
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 17 AWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVS 76
AWS D LL A ++I+ + C++ GH + + F+PQ NL++S S
Sbjct: 78 AWSSDSN----LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGS 132
Query: 77 KDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
D ++R+W++KT C+ + H D V + F+ G+ I+S D ++WD
Sbjct: 133 FDESVRIWDVKTGKCLKT---LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 29 LAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKT 88
LA + + +I+I+ + GH I+++ + D NLL+S S D TL++W++ +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSS 102
Query: 89 DICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
C+ ++GH + V +F+ I+S D S+++WD+
Sbjct: 103 GKCLKT---LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNI-KTDICIAIFGGVEGHRDEVLSADFDL 112
GH A++ +KF P L S S D +++W I G G D S+D +L
Sbjct: 27 GHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 85
Query: 113 LGTKIMSCGMDHSLKLWDLT 132
L +S D +LK+WD++
Sbjct: 86 L----VSASDDKTLKIWDVS 101
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 17 AWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVS 76
AWS D LL A ++I+ + C++ GH + + F+PQ NL++S S
Sbjct: 72 AWSSDSN----LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGS 126
Query: 77 KDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
D ++R+W++KT C+ + H D V + F+ G+ I+S D ++WD
Sbjct: 127 FDESVRIWDVKTGKCLKT---LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 29 LAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKT 88
LA + + +I+I+ + GH I+++ + D NLL+S S D TL++W++ +
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSS 96
Query: 89 DICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
C+ ++GH + V +F+ I+S D S+++WD+
Sbjct: 97 GKCLKT---LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNI-KTDICIAIFGGVEGHRDEVLSADFDL 112
GH A++ +KF P L S S D +++W I G G D S+D +L
Sbjct: 21 GHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 79
Query: 113 LGTKIMSCGMDHSLKLWDLT 132
L +S D +LK+WD++
Sbjct: 80 L----VSASDDKTLKIWDVS 95
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 17 AWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVS 76
AWS D LL A ++I+ + C++ GH + + F+PQ NL++S S
Sbjct: 77 AWSSDSN----LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGS 131
Query: 77 KDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
D ++R+W++KT C+ + H D V + F+ G+ I+S D ++WD
Sbjct: 132 FDESVRIWDVKTGKCLKT---LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 182
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 29 LAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKT 88
LA + + +I+I+ + GH I+++ + D NLL+S S D TL++W++ +
Sbjct: 43 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSS 101
Query: 89 DICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
C+ ++GH + V +F+ I+S D S+++WD+
Sbjct: 102 GKCLKT---LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNI-KTDICIAIFGGVEGHRDEVLSADFDL 112
GH A++ +KF P L S S D +++W I G G D S+D +L
Sbjct: 26 GHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 84
Query: 113 LGTKIMSCGMDHSLKLWDLT 132
L +S D +LK+WD++
Sbjct: 85 L----VSASDDKTLKIWDVS 100
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 17 AWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVS 76
AWS D LL A ++I+ + C++ GH + + F+PQ NL++S S
Sbjct: 75 AWSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGS 129
Query: 77 KDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
D ++R+W++KT C+ + H D V + F+ G+ I+S D ++WD
Sbjct: 130 FDESVRIWDVKTGKCLKT---LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 29 LAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKT 88
LA + + +I+I+ + GH I+++ + D NLL+S S D TL++W++ +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSS 99
Query: 89 DICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
C+ ++GH + V +F+ I+S D S+++WD+
Sbjct: 100 GKCLKT---LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNI-KTDICIAIFGGVEGHRDEVLSADFDL 112
GH A++ +KF P L S S D +++W I G G D S+D +L
Sbjct: 24 GHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 82
Query: 113 LGTKIMSCGMDHSLKLWDLT 132
L +S D +LK+WD++
Sbjct: 83 L----VSASDDKTLKIWDVS 98
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 17 AWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVS 76
AWS D LL A ++I+ + C++ GH + + F+PQ NL++S S
Sbjct: 75 AWSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGS 129
Query: 77 KDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
D ++R+W++KT C+ + H D V + F+ G+ I+S D ++WD
Sbjct: 130 FDESVRIWDVKTGKCLKT---LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 29 LAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKT 88
LA + + +I+I+ + GH I+++ + D NLL+S S D TL++W++ +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSS 99
Query: 89 DICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
C+ ++GH + V +F+ I+S D S+++WD+
Sbjct: 100 GKCLKT---LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNI-KTDICIAIFGGVEGHRDEVLSADFDL 112
GH A++ +KF P L S S D +++W I G G D S+D +L
Sbjct: 24 GHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 82
Query: 113 LGTKIMSCGMDHSLKLWDLT 132
L +S D +LK+WD++
Sbjct: 83 L----VSASDDKTLKIWDVS 98
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 17 AWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVS 76
AWS D LL A ++I+ + C++ GH + + F+PQ NL++S S
Sbjct: 75 AWSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGS 129
Query: 77 KDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
D ++R+W++KT C+ + H D V + F+ G+ I+S D ++WD
Sbjct: 130 FDESVRIWDVKTGKCLKT---LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 29 LAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKT 88
LA + + +I+I+ + GH I+++ + D NLL+S S D TL++W++ +
Sbjct: 41 LAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSS 99
Query: 89 DICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
C+ ++GH + V +F+ I+S D S+++WD+
Sbjct: 100 GKCLKT---LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNI-KTDICIAIFGGVEGHRDEVLSADFDL 112
GH A++ +KF P L + S D +++W I G G D S+D +L
Sbjct: 24 GHTKAVSSVKFSPNG-EWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 82
Query: 113 LGTKIMSCGMDHSLKLWDLT 132
L +S D +LK+WD++
Sbjct: 83 L----VSASDDKTLKIWDVS 98
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 17 AWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVS 76
AWS D LL A ++I+ + C++ GH + + F+PQ NL++S S
Sbjct: 71 AWSSDSN----LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGS 125
Query: 77 KDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
D ++R+W++KT C+ + H D V + F+ G+ I+S D ++WD
Sbjct: 126 FDESVRIWDVKTGKCLKT---LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 176
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 29 LAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKT 88
LA + + +I+I+ + GH I+++ + D NLL+S S D TL++W++ +
Sbjct: 37 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSS 95
Query: 89 DICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
C+ ++GH + V +F+ I+S D S+++WD+
Sbjct: 96 GKCLKT---LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNI-KTDICIAIFGGVEGHRDEVLSADFDL 112
GH A++ +KF P L S S D +++W I G G D S+D +L
Sbjct: 20 GHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 78
Query: 113 LGTKIMSCGMDHSLKLWDLT 132
L +S D +LK+WD++
Sbjct: 79 L----VSASDDKTLKIWDVS 94
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 19 SMDLESGRPLLAVAGSRAVIRIF------SPAFHACVRHFYGHGHAINELKFHPQDFNLL 72
S+ +G+P L ++ SR I F VR F GH H + + D
Sbjct: 22 SLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL-TADGAYA 80
Query: 73 LSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
LS S D TLRLW++ T F GH+ +V+S D D + I+S D ++K+W +
Sbjct: 81 LSASWDKTLRLWDVATGETYQRF---VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTD-----ICIAIFGGVEGH----RDE 104
GH + L NLLLS S+D TL W + D + + F +GH +D
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF---KGHSHIVQDC 71
Query: 105 VLSADFDLLGTKIMSCGMDHSLKLWDLTKPE 135
L+AD G +S D +L+LWD+ E
Sbjct: 72 TLTAD----GAYALSASWDKTLRLWDVATGE 98
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 15/108 (13%)
Query: 38 IRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGG 97
+R++ A + F GH + + + ++++S S+D T+++W IK C+A
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTIKVWTIKGQ-CLATL-- 144
Query: 98 VEGHRDEVLS--------ADFDLLGTKIMSCGMDHSLKLWDLTKPEIK 137
GH D V AD D I+S G D +K W+L + +I+
Sbjct: 145 -LGHNDWVSQVRVVPNEKADDD--SVTIISAGNDKMVKAWNLNQFQIE 189
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 16/143 (11%)
Query: 19 SMDLESGRPLLAVAGSR-AVIRIFSPAFHACVRHFYGHGHAINELKFHPQ-----DFNLL 72
S+D++ ++ ++GSR I++++ C+ GH +++++ P D +
Sbjct: 112 SVDIDKKASMI-ISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 73 LSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL- 131
+S D ++ WN+ A F GH + + GT I S G D + LW+L
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 132 TKPEIKDACAE----SYTFNPAR 150
K + A+ S F+P R
Sbjct: 227 AKKAMYTLSAQDEVFSLAFSPNR 249
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 19 SMDLESGRPLLAVAGSRAVIRIF------SPAFHACVRHFYGHGHAINELKFHPQDFNLL 72
S+ +G+P L ++ SR I F VR F GH H + + D
Sbjct: 22 SLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL-TADGAYA 80
Query: 73 LSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
LS S D TLRLW++ T F GH+ +V+S D D + I+S D ++K+W +
Sbjct: 81 LSASWDKTLRLWDVATGETYQRF---VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTD-----ICIAIFGGVEGH----RDE 104
GH + L NLLLS S+D TL W + D + + F +GH +D
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF---KGHSHIVQDC 71
Query: 105 VLSADFDLLGTKIMSCGMDHSLKLWDLTKPE 135
L+AD G +S D +L+LWD+ E
Sbjct: 72 TLTAD----GAYALSASWDKTLRLWDVATGE 98
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 15/108 (13%)
Query: 38 IRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGG 97
+R++ A + F GH + + + ++++S S+D T+++W IK C+A
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTIKVWTIKGQ-CLATL-- 144
Query: 98 VEGHRDEVLS--------ADFDLLGTKIMSCGMDHSLKLWDLTKPEIK 137
GH D V AD D I+S G D +K W+L + +I+
Sbjct: 145 -LGHNDWVSQVRVVPNEKADDD--SVTIISAGNDKMVKAWNLNQFQIE 189
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 16/143 (11%)
Query: 19 SMDLESGRPLLAVAGSR-AVIRIFSPAFHACVRHFYGHGHAINELKFHPQ-----DFNLL 72
S+D++ ++ ++GSR I++++ C+ GH +++++ P D +
Sbjct: 112 SVDIDKKASMI-ISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 73 LSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL- 131
+S D ++ WN+ A F GH + + GT I S G D + LW+L
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 132 TKPEIKDACAE----SYTFNPAR 150
K + A+ S F+P R
Sbjct: 227 AKKAMYTLSAQDEVFSLAFSPNR 249
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 19 SMDLESGRPLLAVAGSRAVIRIF------SPAFHACVRHFYGHGHAINELKFHPQDFNLL 72
S+ +G+P L ++ SR I F VR F GH H + + D
Sbjct: 22 SLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL-TADGAYA 80
Query: 73 LSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
LS S D TLRLW++ T F GH+ +V+S D D + I+S D ++K+W +
Sbjct: 81 LSASWDKTLRLWDVATGETYQRF---VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTD-----ICIAIFGGVEGH----RDE 104
GH + L NLLLS S+D TL W + D + + F +GH +D
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF---KGHSHIVQDC 71
Query: 105 VLSADFDLLGTKIMSCGMDHSLKLWDLTKPE 135
L+AD G +S D +L+LWD+ E
Sbjct: 72 TLTAD----GAYALSASWDKTLRLWDVATGE 98
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 15/108 (13%)
Query: 38 IRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGG 97
+R++ A + F GH + + + ++++S S+D T+++W IK C+A
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTIKVWTIKGQ-CLATL-- 144
Query: 98 VEGHRDEVLS--------ADFDLLGTKIMSCGMDHSLKLWDLTKPEIK 137
GH D V AD D I+S G D +K W+L + +I+
Sbjct: 145 -LGHNDWVSQVRVVPNEKADDD--SVTIISAGNDKMVKAWNLNQFQIE 189
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 16/143 (11%)
Query: 19 SMDLESGRPLLAVAGSR-AVIRIFSPAFHACVRHFYGHGHAINELKFHPQ-----DFNLL 72
S+D++ ++ ++GSR I++++ C+ GH +++++ P D +
Sbjct: 112 SVDIDKKASMI-ISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 73 LSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL- 131
+S D ++ WN+ A F GH + + GT I S G D + LW+L
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 132 TKPEIKDACAE----SYTFNPAR 150
K + A+ S F+P R
Sbjct: 227 AKKAMYTLSAQDEVFSLAFSPNR 249
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 19 SMDLESGRPLLAVAGSRAVIRIF------SPAFHACVRHFYGHGHAINELKFHPQDFNLL 72
S+ +G+P L ++ SR I F VR F GH H + + D
Sbjct: 16 SLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL-TADGAYA 74
Query: 73 LSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
LS S D TLRLW++ T F GH+ +V+S D D + I+S D ++K+W +
Sbjct: 75 LSASWDKTLRLWDVATGETYQRF---VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 130
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTD-----ICIAIFGGVEGH----RDE 104
GH + L NLLLS S+D TL W + D + + F +GH +D
Sbjct: 9 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF---KGHSHIVQDC 65
Query: 105 VLSADFDLLGTKIMSCGMDHSLKLWDLTKPE 135
L+AD G +S D +L+LWD+ E
Sbjct: 66 TLTAD----GAYALSASWDKTLRLWDVATGE 92
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 15/108 (13%)
Query: 38 IRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGG 97
+R++ A + F GH + + + ++++S S+D T+++W IK C+A
Sbjct: 83 LRLWDVATGETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTIKVWTIKGQ-CLATL-- 138
Query: 98 VEGHRDEVLS--------ADFDLLGTKIMSCGMDHSLKLWDLTKPEIK 137
GH D V AD D I+S G D +K W+L + +I+
Sbjct: 139 -LGHNDWVSQVRVVPNEKADDD--SVTIISAGNDKMVKAWNLNQFQIE 183
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 16/143 (11%)
Query: 19 SMDLESGRPLLAVAGSR-AVIRIFSPAFHACVRHFYGHGHAINELKFHPQ-----DFNLL 72
S+D++ ++ ++GSR I++++ C+ GH +++++ P D +
Sbjct: 106 SVDIDKKASMI-ISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTI 163
Query: 73 LSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL- 131
+S D ++ WN+ A F GH + + GT I S G D + LW+L
Sbjct: 164 ISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 220
Query: 132 TKPEIKDACAE----SYTFNPAR 150
K + A+ S F+P R
Sbjct: 221 AKKAMYTLSAQDEVFSLAFSPNR 243
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 19 SMDLESGRPLLAVAGSRAVIRIF------SPAFHACVRHFYGHGHAINELKFHPQDFNLL 72
S+ +G+P L ++ SR I F VR F GH H + + D
Sbjct: 22 SLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL-TADGAYA 80
Query: 73 LSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
LS S D TLRLW++ T F GH+ +V+S D D + I+S D ++K+W +
Sbjct: 81 LSASWDKTLRLWDVATGETYQRF---VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTD-----ICIAIFGGVEGH----RDE 104
GH + L NLLLS S+D TL W + D + + F +GH +D
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF---KGHSHIVQDC 71
Query: 105 VLSADFDLLGTKIMSCGMDHSLKLWDLTKPE 135
L+AD G +S D +L+LWD+ E
Sbjct: 72 TLTAD----GAYALSASWDKTLRLWDVATGE 98
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 15/108 (13%)
Query: 38 IRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGG 97
+R++ A + F GH + + + ++++S S+D T+++W IK C+A
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTIKVWTIKGQ-CLATL-- 144
Query: 98 VEGHRDEVLS--------ADFDLLGTKIMSCGMDHSLKLWDLTKPEIK 137
GH D V AD D I+S G D +K W+L + +I+
Sbjct: 145 -LGHNDWVSQVRVVPNEKADDD--SVTIISAGNDKMVKAWNLNQFQIE 189
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 16/143 (11%)
Query: 19 SMDLESGRPLLAVAGSR-AVIRIFSPAFHACVRHFYGHGHAINELKFHPQ-----DFNLL 72
S+D++ ++ ++GSR I++++ C+ GH +++++ P D +
Sbjct: 112 SVDIDKKASMI-ISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 73 LSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL- 131
+S D ++ WN+ A F GH + + GT I S G D + LW+L
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 132 TKPEIKDACAE----SYTFNPAR 150
K + A+ S F+P R
Sbjct: 227 AKKAMYTLSAQDEVFSLAFSPNR 249
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 19 SMDLESGRPLLAVAGSRAVIRIF------SPAFHACVRHFYGHGHAINELKFHPQDFNLL 72
S+ +G+P L ++ SR I F VR F GH H + + D
Sbjct: 22 SLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL-TADGAYA 80
Query: 73 LSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
LS S D TLRLW++ T F GH+ +V S D D + I+S D ++K+W +
Sbjct: 81 LSASWDKTLRLWDVATGETYQRF---VGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI 136
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTD-----ICIAIFGGVEGH----RDE 104
GH + L NLLLS S+D TL W + D + + F +GH +D
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF---KGHSHIVQDC 71
Query: 105 VLSADFDLLGTKIMSCGMDHSLKLWDLTKPE 135
L+AD G +S D +L+LWD+ E
Sbjct: 72 TLTAD----GAYALSASWDKTLRLWDVATGE 98
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 37 VIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFG 96
+R++ A + F GH + + + + ++S S+D T+++W IK C+A
Sbjct: 88 TLRLWDVATGETYQRFVGHKSDVXSVDIDKK-ASXIISGSRDKTIKVWTIKGQ-CLATL- 144
Query: 97 GVEGHRDEVLS--------ADFDLLGTKIMSCGMDHSLKLWDLTKPEIK 137
GH D V AD D + I+S G D +K W+L + +I+
Sbjct: 145 --LGHNDWVSQVRVVPNEKADDDSV--TIISAGNDKXVKAWNLNQFQIE 189
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 31 VAGSR-AVIRIFSPAFHACVRHFYGHGHAINELKFHPQ-----DFNLLLSVSKDHTLRLW 84
++GSR I++++ C+ GH +++++ P D ++S D ++ W
Sbjct: 123 ISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAW 181
Query: 85 NIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
N+ A F GH + + GT I S G D + LW+L
Sbjct: 182 NLNQFQIEADF---IGHNSNINTLTASPDGTLIASAGKDGEIXLWNL 225
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 33/206 (16%)
Query: 50 RHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSAD 109
+ GH H +++L Q+ +S S D TLRLW+++T F GH+ EV S
Sbjct: 70 KALTGHNHFVSDLALS-QENCFAISSSWDKTLRLWDLRTGTTYKRF---VGHQSEVYSVA 125
Query: 110 FDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFDTQKEHFPQFSTRD 169
F +I+S G + +KLW++ E K + AE ++
Sbjct: 126 FSPDNRQILSAGAEREIKLWNILG-ECKFSSAE-------------------------KE 159
Query: 170 IHRNYVDCVRWLGDFVLSKSCENCIICWKPGRLEDKELRTNETNVTIINRLNFKDCEIWF 229
H ++V CVR+ + S + + D L+ TN I R FK E
Sbjct: 160 NHSDWVSCVRY-SPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQI--RYTFKAHESNV 216
Query: 230 IRFSMDYWQKILAVGNQSGRTYVWDL 255
S+ K +A G + + +WD+
Sbjct: 217 NHLSISPNGKYIATGGKDKKLLIWDI 242
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 39/175 (22%)
Query: 50 RHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSAD 109
R GH ++++ + N +S S DH+LRLWN++ C F GH +VLS
Sbjct: 61 RRLEGHSAFVSDVALS-NNGNFAVSASWDHSLRLWNLQNGQCQYKF---LGHTKDVLSVA 116
Query: 110 FDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFDTQKEHFPQFSTRD 169
F +I+S G D++L++W+ +K C + +R
Sbjct: 117 FSPDNRQIVSGGRDNALRVWN-----VKGECMHTL----------------------SRG 149
Query: 170 IHRNYVDCVRWL----GDFVLSKSCENCIICW--KPGRL-EDKELRTNE-TNVTI 216
H ++V CVR+ ++S +N + W GRL D + TN T+VT+
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTV 204
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 53/152 (34%), Gaps = 43/152 (28%)
Query: 38 IRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKT--------- 88
+R+++ C F GH + + F P D ++S +D+ LR+WN+K
Sbjct: 91 LRLWNLQNGQCQYKFLGHTKDVLSVAFSP-DNRQIVSGGRDNALRVWNVKGECMHTLSRG 149
Query: 89 ---------------DICIAIFGG------------------VEGHRDEVLSADFDLLGT 115
D + + GG ++GH + V S G+
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGS 209
Query: 116 KIMSCGMDHSLKLWDLTKPEIKDACAESYTFN 147
S D +LWDLTK E A N
Sbjct: 210 LCASSDKDGVARLWDLTKGEALSEMAAGAPIN 241
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 93/240 (38%), Gaps = 48/240 (20%)
Query: 44 AFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRD 103
A+ R GH H + ++ D LS S D LRLW++ + F GH
Sbjct: 418 AYGVAQRRLTGHSHFVEDVVLS-SDGQFALSGSWDGELRLWDLAAGVSTRRF---VGHTK 473
Query: 104 EVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFDTQKEHFP 163
+VLS F L +I+S D ++KLW+ T E K +E
Sbjct: 474 DVLSVAFSLDNRQIVSASRDRTIKLWN-TLGECKYTISEG-------------------- 512
Query: 164 QFSTRDIHRNYVDCVRW----LGDFVLSKSCENCIICWKPGRLEDKELRTNETNVTIINR 219
+ HR++V CVR+ L ++S S + + W N +N + +
Sbjct: 513 ----GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW------------NLSNCKLRST 556
Query: 220 LNFKDCEIWFIRFSMDYWQKILAVGNQSGRTYVWDL-DVQDPSSIKFQILSHPRCMSAVR 278
L + + S D + A G + G +WDL + + S++ + H C S R
Sbjct: 557 LAGHTGYVSTVAVSPD--GSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNR 614
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 29 LAVAGS-RAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIK 87
A++GS +R++ A R F GH + + F D ++S S+D T++LWN
Sbjct: 444 FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNTL 502
Query: 88 TDICIAIFGGVEGHRDEVLSADF--DLLGTKIMSCGMDHSLKLWDLTKPEIKDACA 141
+ I G EGHRD V F + L I+S D ++K+W+L+ +++ A
Sbjct: 503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA 558
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 28 LLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIK 87
+++ +G R I++++ + VR GH I L++ + L++S S D+T+RLW+I+
Sbjct: 269 IVSASGDRT-IKVWNTSTCEFVRTLNGHKRGIACLQYRDR---LVVSGSSDNTIRLWDIE 324
Query: 88 TDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFN 147
C+ + EGH + V FD +I+S D +K+WDL A A +
Sbjct: 325 CGACLRVL---EGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR 379
Query: 148 P--ARSTRPFDTQKEHFPQFST 167
S R F Q + F S+
Sbjct: 380 TLVEHSGRVFRLQFDEFQIVSS 401
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 92/238 (38%), Gaps = 57/238 (23%)
Query: 22 LESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTL 81
L+ ++ S + +R++ + H A+ L+F+ ++++ SKD ++
Sbjct: 179 LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSI 235
Query: 82 RLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACA 141
+W++ + I + + GHR V DFD I+S D ++K+W+ + C
Sbjct: 236 AVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTS------TCE 287
Query: 142 ESYTFNPARSTRPFDTQKEHFPQFSTRDIHRNYVDCVRWLGDFVLSKSCENCIICWKPGR 201
T N H+ + C+++ V+S S +N I R
Sbjct: 288 FVRTLNG----------------------HKRGIACLQYRDRLVVSGSSDNTI------R 319
Query: 202 LEDKE----LRTNETNVTIINRLNFKDCEIWFIRFSMDYWQKILAVGNQSGRTYVWDL 255
L D E LR E + ++ + F + K + G G+ VWDL
Sbjct: 320 LWDIECGACLRVLEGHEELVRCIRFDN--------------KRIVSGAYDGKIKVWDL 363
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 68 DFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLK 127
D ++S +D+T+++W+ T C I GH VL +D I++ D +++
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRIL---TGHTGSVLCLQYD--ERVIITGSSDSTVR 196
Query: 128 LWDLTKPEI 136
+WD+ E+
Sbjct: 197 VWDVNTGEM 205
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 121/301 (40%), Gaps = 80/301 (26%)
Query: 17 AWSMDLESGRPLLAVAGSR-AVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSV 75
WS + R + ++GS +++++ C+ YGH + + H + ++S
Sbjct: 162 VWSSQM---RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR---VVSG 215
Query: 76 SKDHTLRLWNIKTDICIAIFGG-------------------------------------V 98
S+D TLR+W+I+T C+ + G +
Sbjct: 216 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 275
Query: 99 EGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL----------------TKPEIKDACAE 142
+GH + V S FD G ++S +D S+++WD+ + E+KD
Sbjct: 276 QGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILV 333
Query: 143 SYTFNPARSTRPFDTQKEHFPQ-FSTRDIHRNYVDCVRWLGDFVLSKSCENCIICWKPGR 201
S N + + +D + Q + H++ V C+++ +FV++ S + + W
Sbjct: 334 S--GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW---- 387
Query: 202 LEDKELRTNETNVTIIN-RLNFKDCEIWFIRFSMDYWQKILAVGNQSG----RTYVWDLD 256
+L+T E ++ +W IR S + + AVG+++G + V D D
Sbjct: 388 ----DLKTGEFIRNLVTLESGGSGGVVWRIRASNT--KLVCAVGSRNGTEETKLLVLDFD 441
Query: 257 V 257
V
Sbjct: 442 V 442
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 38 IRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGG 97
++++S C+R GH + + N+++S S D TL++WN +T CI
Sbjct: 141 LKVWSAVTGKCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTL-- 195
Query: 98 VEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
GH V L +++S D +L++WD+
Sbjct: 196 -YGHTSTVRC--MHLHEKRVVSGSRDATLRVWDI 226
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 57 HAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTK 116
H I L+F N ++S S D+TL++W+ T C+ GH V S+ +
Sbjct: 120 HVITCLQFCG---NRIVSGSDDNTLKVWSAVTGKCLRTL---VGHTGGVWSS--QMRDNI 171
Query: 117 IMSCGMDHSLKLWDLTKPE 135
I+S D +LK+W+ E
Sbjct: 172 IISGSTDRTLKVWNAETGE 190
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 12/169 (7%)
Query: 37 VIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFG 96
+IR++ + GH + LK+ +L+S S D T+R+W+IK C +F
Sbjct: 143 MIRVYDSINKKFLLQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCCTHVF- 199
Query: 97 GVEGHRDEVLSADF-DLLGTK-IMSCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRP 154
EGH V D + K I++ D++L +W L K E + +
Sbjct: 200 --EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV----- 252
Query: 155 FDTQKEHFPQFSTRDIHRNYVDCVRWLGDFVLSKSCENCIICWKPGRLE 203
F T +E+ H V V G+ V+S S +N +I W +++
Sbjct: 253 FHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK 301
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 42 SPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGH 101
+P F +R GH ++ + H N+++S S D+TL +W++ C+ I + GH
Sbjct: 259 NPYFVGVLR---GHMASVRTVSGHG---NIVVSGSYDNTLIVWDVAQMKCLYI---LSGH 309
Query: 102 RDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEI 136
D + S +D + +S MD ++++WDL E+
Sbjct: 310 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL 344
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 29 LAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLW---N 85
+ G + I ++ GH I+ L+F+ + LLLS S D TLR+W N
Sbjct: 220 FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGN 278
Query: 86 IKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTK 133
+ C GH ++SA + + K++SC MD S++LW L +
Sbjct: 279 GNSQNCFY------GHSQSIVSASW-VGDDKVISCSMDGSVRLWSLKQ 319
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 68 DFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLK 127
D N +++ ++ LRLWN KT + + HR ++S ++ GT I+S +++
Sbjct: 119 DGNSIVTGVENGELRLWN-KTGALLNVL---NFHRAPIVSVKWNKDGTHIISMDVENVTI 174
Query: 128 LWDL 131
LW++
Sbjct: 175 LWNV 178
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 46 HACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTD--ICIAIFGGVEGHRD 103
+ CV H + + +HP LL S S D T++L+ + D +C A EGH
Sbjct: 140 YECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATL---EGHES 195
Query: 104 EVLSADFDLLGTKIMSCGMDHSLKLW 129
V S FD G ++ SC D ++++W
Sbjct: 196 TVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 9/123 (7%)
Query: 18 WSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFY---GHGHAINELKFHPQDFNLLLS 74
W + LLA G IRI+ + + GH + ++ + P N L S
Sbjct: 20 WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG-NYLAS 78
Query: 75 VSKDHTLRLWNIKTD--ICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLT 132
S D T +W D C+ EGH +EV S + G + +C D S+ +W++
Sbjct: 79 ASFDATTCIWKKNQDDFECVTTL---EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135
Query: 133 KPE 135
+ +
Sbjct: 136 EED 138
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 12/162 (7%)
Query: 38 IRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGG 97
IR++ + GH + LK+ +L+S S D T+R+W+IK C +F
Sbjct: 144 IRVYDSINKKFLLQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCCTHVF-- 199
Query: 98 VEGHRDEVLSADF-DLLGTK-IMSCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPF 155
EGH V D + K I++ D++L +W L K E + + F
Sbjct: 200 -EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV-----F 253
Query: 156 DTQKEHFPQFSTRDIHRNYVDCVRWLGDFVLSKSCENCIICW 197
T +E+ H V V G+ V+S S +N +I W
Sbjct: 254 HTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVW 295
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 42 SPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGH 101
+P F +R GH ++ + H N+++S S D+TL +W++ C+ I + GH
Sbjct: 259 NPYFVGVLR---GHXASVRTVSGHG---NIVVSGSYDNTLIVWDVAQXKCLYI---LSGH 309
Query: 102 RDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEI 136
D + S +D + +S D ++++WDL E+
Sbjct: 310 TDRIYSTIYDHERKRCISASXDTTIRIWDLENGEL 344
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 50 RHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSAD 109
R GH H ++++ D LS S D TLRLW++ T F GH +VLS
Sbjct: 57 RALRGHSHFVSDVVIS-SDGQFALSGSWDGTLRLWDLTTGTTTRRF---VGHTKDVLSVA 112
Query: 110 FDLLGTKIMSCGMDHSLKLWD 130
F +I+S D ++KLW+
Sbjct: 113 FSSDNRQIVSGSRDKTIKLWN 133
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 29 LAVAGS-RAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIK 87
A++GS +R++ R F GH + + F D ++S S+D T++LWN
Sbjct: 77 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNT- 134
Query: 88 TDICIAIFGGVEGHRDEVLSADFDLLGTK--IMSCGMDHSLKLWDLTKPEIK 137
+C E H + V F + I+SCG D +K+W+L ++K
Sbjct: 135 LGVCKYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 185
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFG----GVEGH----RDEV 105
GH + ++ PQ +++LS S+D T+ +W + D +G + GH D V
Sbjct: 13 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRD--ETNYGIPQRALRGHSHFVSDVV 70
Query: 106 LSADFDLLGTKIMSCGMDHSLKLWDLT 132
+S+D G +S D +L+LWDLT
Sbjct: 71 ISSD----GQFALSGSWDGTLRLWDLT 93
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 50 RHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSAD 109
R GH H ++++ D LS S D TLRLW++ T F GH +VLS
Sbjct: 80 RALRGHSHFVSDVVI-SSDGQFALSGSWDGTLRLWDLTTGTTTRRF---VGHTKDVLSVA 135
Query: 110 FDLLGTKIMSCGMDHSLKLWD 130
F +I+S D ++KLW+
Sbjct: 136 FSSDNRQIVSGSRDKTIKLWN 156
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 29 LAVAGS-RAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIK 87
A++GS +R++ R F GH + + F D ++S S+D T++LWN
Sbjct: 100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF-SSDNRQIVSGSRDKTIKLWNT- 157
Query: 88 TDICIAIFGGVEGHRDEVLSADFDLLGTK--IMSCGMDHSLKLWDLTKPEIK 137
+C E H + V F + I+SCG D +K+W+L ++K
Sbjct: 158 LGVCKYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 208
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFG----GVEGH----RDEV 105
GH + ++ PQ +++LS S+D T+ +W + D +G + GH D V
Sbjct: 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRD--ETNYGIPQRALRGHSHFVSDVV 93
Query: 106 LSADFDLLGTKIMSCGMDHSLKLWDLT 132
+S+D G +S D +L+LWDLT
Sbjct: 94 ISSD----GQFALSGSWDGTLRLWDLT 116
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 49 VRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSA 108
++ GH ++N + F P D + S S D T++LWN + + GH V
Sbjct: 255 LQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNGQLLQTL----TGHSSSVWGV 309
Query: 109 DFDLLGTKIMSCGMDHSLKLWD 130
F G I S D ++KLW+
Sbjct: 310 AFSPDGQTIASASDDKTVKLWN 331
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 49 VRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSA 108
++ GH ++ + F P D + S S D T++LWN + + GH V
Sbjct: 501 LQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTL----TGHSSSVWGV 555
Query: 109 DFDLLGTKIMSCGMDHSLKLWD 130
F G I S D ++KLW+
Sbjct: 556 AFSPDGQTIASASSDKTVKLWN 577
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 49 VRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSA 108
++ GH ++ + F P D + S S D T++LWN + + GH V
Sbjct: 91 LQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTL----TGHSSSVWGV 145
Query: 109 DFDLLGTKIMSCGMDHSLKLWD 130
F G I S D ++KLW+
Sbjct: 146 AFSPDGQTIASASDDKTVKLWN 167
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 49 VRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSA 108
++ GH ++ + F P D + S S D T++LWN + + GH V
Sbjct: 173 LQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTL----TGHSSSVRGV 227
Query: 109 DFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFN 147
F G I S D ++KLW+ ++ S + N
Sbjct: 228 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVN 266
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 49 VRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSA 108
++ GH ++ + F P D + S S D T++LWN + + GH V
Sbjct: 419 LQTLTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNRNGQLLQTL----TGHSSSVRGV 473
Query: 109 DFDLLGTKIMSCGMDHSLKLWD 130
F G I S D ++KLW+
Sbjct: 474 AFSPDGQTIASASDDKTVKLWN 495
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 49 VRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSA 108
++ GH ++ + F P D + S S D T++LWN + + GH V
Sbjct: 132 LQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTL----TGHSSSVWGV 186
Query: 109 DFDLLGTKIMSCGMDHSLKLWD 130
F G I S D ++KLW+
Sbjct: 187 AFSPDGQTIASASDDKTVKLWN 208
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 49 VRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSA 108
++ GH ++ + F P D + S S D T++LWN + + GH V
Sbjct: 50 LQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTL----TGHSSSVRGV 104
Query: 109 DFDLLGTKIMSCGMDHSLKLWD 130
F G I S D ++KLW+
Sbjct: 105 AFSPDGQTIASASDDKTVKLWN 126
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 49 VRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSA 108
++ GH ++ + F P D + S S D T++LWN + + GH V
Sbjct: 337 LQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTL----TGHSSSVRGV 391
Query: 109 DFDLLGTKIMSCGMDHSLKLWD 130
F G I S D ++KLW+
Sbjct: 392 AFSPDGQTIASASDDKTVKLWN 413
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 55 HGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLG 114
H ++ + F P D + S S D T++LWN + + GH V F G
Sbjct: 15 HSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTL----TGHSSSVWGVAFSPDG 69
Query: 115 TKIMSCGMDHSLKLWD 130
I S D ++KLW+
Sbjct: 70 QTIASASDDKTVKLWN 85
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 49 VRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSA 108
++ GH ++ + F P D + S S D T++LWN + GH V
Sbjct: 296 LQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQHLQTL----TGHSSSVWGV 350
Query: 109 DFDLLGTKIMSCGMDHSLKLWD 130
F G I S D ++KLW+
Sbjct: 351 AFSPDGQTIASASDDKTVKLWN 372
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 12/128 (9%)
Query: 16 CAWSMD--LESGRPLLAVAGSRAVIRIFSPAFHA-------CVRHFYGHGHAINELKFHP 66
C W M+ +A G + IF+ + A R GH + ++ P
Sbjct: 108 CPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVP 167
Query: 67 QDFNLLLSVSKDHTLRLWNIKTDICIAIFGG--VEGHRDEVLSADFDLLGTKIMSCGM-D 123
L++ S D T LW++ T I+IFG GH +VLS + L + G D
Sbjct: 168 DQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD 227
Query: 124 HSLKLWDL 131
+++LWDL
Sbjct: 228 TTVRLWDL 235
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 78/214 (36%), Gaps = 39/214 (18%)
Query: 41 FSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEG 100
F+P C R GH + L + P+ N ++S S+D L +WN T ++
Sbjct: 51 FNPTDLVCCRTLQGHSGKVYSLDWTPEK-NWIVSASQDGRLIVWNALTS---QKTHAIKL 106
Query: 101 HRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIKD-------------ACAESYTFN 147
H V+ F G + G+D + +++L+ +D A S +
Sbjct: 107 HCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYV 166
Query: 148 PARSTRPFDTQKEH-------------------FPQFSTRDIHRNYVDCVRWLGDFVLSK 188
P + TR + FP T D+ ++ + + +S
Sbjct: 167 PDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLN--ANMFISG 224
Query: 189 SCENCIICWKPGRLEDKELRTNETNVTIINRLNF 222
SC+ + W R+ + +RT + IN + F
Sbjct: 225 SCDTTVRLWDL-RITSRAVRTYHGHEGDINSVKF 257
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 38 IRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGG 97
+RI S A VR ++GH IN +KF P D + S D T RL++++T + ++
Sbjct: 235 LRITSRA----VRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289
Query: 98 VEGHRDE----VLSADFDLLGTKIMSCGMDHSLKLWDLTKPEI 136
D V S F + G + + + +WD E+
Sbjct: 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM 332
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 38 IRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIK-TDICIAIFG 96
I IF F + GH + L + + N+ +S S D T+RLW+++ T + +
Sbjct: 193 ISIFGSEFPS------GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY- 245
Query: 97 GVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
GH ++ S F G + + D + +L+D+
Sbjct: 246 --HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM 278
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 10 EENFYTCAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDF 69
E++ Y+ + SG L++ +G R V RI+ C + + P D
Sbjct: 165 EQDIYSLDY---FPSGDKLVSGSGDRTV-RIWDLRTGQCSLTLSIE-DGVTTVAVSPGDG 219
Query: 70 NLLLSVSKDHTLRLWNIKTDICIAIFGGVE----GHRDEVLSADFDLLGTKIMSCGMDHS 125
+ + S D +R+W+ +T + GH+D V S F G ++S +D S
Sbjct: 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279
Query: 126 LKLWDL 131
+KLW+L
Sbjct: 280 VKLWNL 285
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 59 INELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIM 118
I + F P D L + ++D +R+W+I+ + I +GH ++ S D+ G K++
Sbjct: 126 IRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMIL---QGHEQDIYSLDYFPSGDKLV 181
Query: 119 SCGMDHSLKLWDL 131
S D ++++WDL
Sbjct: 182 SGSGDRTVRIWDL 194
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNI-----KTDICIAIFGGVE----GHRDE 104
GH ++ + F +D ++S S D +++LWN+ K+D G E GH+D
Sbjct: 254 GHKDSVYSVVF-TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 312
Query: 105 VLSADFDLLGTKIMSCGMDHSLKLWD 130
VLS I+S D + WD
Sbjct: 313 VLSVATTQNDEYILSGSKDRGVLFWD 338
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 54 GHGHAINELKFHP-QDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDL 112
G +N + ++P D +++ S D T+++W+ +T C+A +EGH V A F
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT---LEGHMSNVSFAVFHP 238
Query: 113 LGTKIMSCGMDHSLKLWD 130
I+S D +LK+W+
Sbjct: 239 TLPIIISGSEDGTLKIWN 256
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 26 RPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWN 85
+P + A I+I+ +CV GH ++ FHP +++S S+D TL++WN
Sbjct: 198 KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWN 256
Query: 86 IKT 88
T
Sbjct: 257 SST 259
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 47 ACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVL 106
A + F GH H + + F+P+D + S D T+++W++ F G V
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFTLTTGQERGVN 188
Query: 107 SADFDLLGTK--IMSCGMDHSLKLWD 130
D+ L K +++ D ++K+WD
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWD 214
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 54 GHGHAINELKFHP-QDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDL 112
G +N + ++P D +++ S D T+++W+ +T C+A +EGH V A F
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT---LEGHMSNVSFAVFHP 238
Query: 113 LGTKIMSCGMDHSLKLWD 130
I+S D +LK+W+
Sbjct: 239 TLPIIISGSEDGTLKIWN 256
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 26 RPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWN 85
+P + A I+I+ +CV GH ++ FHP +++S S+D TL++WN
Sbjct: 198 KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWN 256
Query: 86 IKT 88
T
Sbjct: 257 SST 259
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 47 ACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVL 106
A + F GH H + + F+P+D + S D T+++W++ F G V
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFTLTTGQERGVN 188
Query: 107 SADFDLLGTK--IMSCGMDHSLKLWD 130
D+ L K +++ D ++K+WD
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWD 214
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 23 ESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLR 82
+S LLA + ++++ C +GH +++N +F P D LL S S D TLR
Sbjct: 710 KSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLR 768
Query: 83 LWNIKT 88
LW++++
Sbjct: 769 LWDVRS 774
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 10/124 (8%)
Query: 10 EENFYTCAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDF 69
E+ CA+S D +A + ++I+ A V + H +N F +
Sbjct: 657 EDEVLCCAFSSD----DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 70 NLLLSV-SKDHTLRLWNIKTDICI-AIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLK 127
+LLL+ S D L+LW++ C +FG S D +LL SC D +L+
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLA----SCSADGTLR 768
Query: 128 LWDL 131
LWD+
Sbjct: 769 LWDV 772
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 16 CAWSMDLESGRPLLAVAGSRAVI-RIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLS 74
C+WS D G ++ A ++ ++ I + A + GH I F P D +++
Sbjct: 804 CSWSAD---GDKIIVAAKNKVLLFDIHTSGLLAEIH--TGHHSTIQYCDFSPYDHLAVIA 858
Query: 75 VSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTK 133
+S+ + + LWNI + + +A GH V F G+ ++ D ++++W+ K
Sbjct: 859 LSQ-YCVELWNIDSRLKVA---DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 8 LIEENFYTCAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQ 67
L E C S LE +A I+I + GH A+ ++F
Sbjct: 959 LPEAQVSCCCLSPHLE----YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQF-TA 1013
Query: 68 DFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLL-GTKIMSCGMDHSL 126
D L+S S+D +++WN +T + ++ H++ V DF LL ++++S D ++
Sbjct: 1014 DGKTLISSSEDSVIQVWNWQT----GDYVFLQAHQETV--KDFRLLQDSRLLSWSFDGTV 1067
Query: 127 KLWDLTKPEIK 137
K+W++ I+
Sbjct: 1068 KVWNVITGRIE 1078
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 20/98 (20%)
Query: 34 SRAVIRIFSPA-FHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICI 92
SR V+R + A +HAC QD + S D TL+++ +T +
Sbjct: 607 SRLVVRPHTDAVYHACF----------------SQDGQRIASCGADKTLQVFKAETGEKL 650
Query: 93 AIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
++ H DEVL F + I +C D +K+WD
Sbjct: 651 L---DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 685
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 18/79 (22%)
Query: 67 QDFNLL-----LSVSKDHTLRLWNIKTDICIAIFGGVEG----HRDEVLSADFDLLGTKI 117
+DF LL LS S D T+++WN+ I G +E H+ VLS TK
Sbjct: 1048 KDFRLLQDSRLLSWSFDGTVKVWNV-------ITGRIERDFTCHQGTVLSCAISSDATKF 1100
Query: 118 MSCGMDHSLKLW--DLTKP 134
S D + K+W DL P
Sbjct: 1101 SSTSADKTAKIWSFDLLSP 1119
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 23 ESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLR 82
+S LLA + ++++ C +GH +++N +F P D LL S S D TLR
Sbjct: 717 KSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLR 775
Query: 83 LWNIKT 88
LW++++
Sbjct: 776 LWDVRS 781
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 10/124 (8%)
Query: 10 EENFYTCAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDF 69
E+ CA+S D +A + ++I+ A V + H +N F +
Sbjct: 664 EDEVLCCAFSSD----DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 70 NLLLSV-SKDHTLRLWNIKTDICI-AIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLK 127
+LLL+ S D L+LW++ C +FG S D +LL SC D +L+
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLA----SCSADGTLR 775
Query: 128 LWDL 131
LWD+
Sbjct: 776 LWDV 779
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 16 CAWSMDLESGRPLLAVAGSRAVI-RIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLS 74
C+WS D G ++ A ++ ++ I + A + GH I F P D +++
Sbjct: 811 CSWSAD---GDKIIVAAKNKVLLFDIHTSGLLAEIH--TGHHSTIQYCDFSPYDHLAVIA 865
Query: 75 VSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTK 133
+S+ + + LWNI + + +A GH V F G+ ++ D ++++W+ K
Sbjct: 866 LSQ-YCVELWNIDSRLKVA---DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 920
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 8 LIEENFYTCAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQ 67
L E C S LE +A I+I + GH A+ ++F
Sbjct: 966 LPEAQVSCCCLSPHLE----YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQF-TA 1020
Query: 68 DFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLL-GTKIMSCGMDHSL 126
D L+S S+D +++WN +T + ++ H++ V DF LL ++++S D ++
Sbjct: 1021 DGKTLISSSEDSVIQVWNWQT----GDYVFLQAHQETV--KDFRLLQDSRLLSWSFDGTV 1074
Query: 127 KLWDLTKPEIK 137
K+W++ I+
Sbjct: 1075 KVWNVITGRIE 1085
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 20/98 (20%)
Query: 34 SRAVIRIFSPA-FHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICI 92
SR V+R + A +HAC QD + S D TL+++ +T +
Sbjct: 614 SRLVVRPHTDAVYHACF----------------SQDGQRIASCGADKTLQVFKAETGEKL 657
Query: 93 AIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
++ H DEVL F + I +C D +K+WD
Sbjct: 658 L---DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 692
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 18/79 (22%)
Query: 67 QDFNLL-----LSVSKDHTLRLWNIKTDICIAIFGGVEG----HRDEVLSADFDLLGTKI 117
+DF LL LS S D T+++WN+ I G +E H+ VLS TK
Sbjct: 1055 KDFRLLQDSRLLSWSFDGTVKVWNV-------ITGRIERDFTCHQGTVLSCAISSDATKF 1107
Query: 118 MSCGMDHSLKLW--DLTKP 134
S D + K+W DL P
Sbjct: 1108 SSTSADKTAKIWSFDLLSP 1126
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 10/90 (11%)
Query: 48 CVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVL- 106
CV+ F H +N ++++P + S S D T RL++++ D +AI+ ++ ++
Sbjct: 232 CVQAFETHESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADREVAIYS-----KESIIF 285
Query: 107 ---SADFDLLGTKIMSCGMDHSLKLWDLTK 133
S DF L G + + D+++ +WD+ K
Sbjct: 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLK 315
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 6 SLLIEENFYTCAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFH 65
++ +E+ A S+D LL + I ++ + V +GH + ++ L+
Sbjct: 276 AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS 335
Query: 66 PQDFNLLLSVSKDHTLRLW 84
P D S S DHTLR+W
Sbjct: 336 P-DGTAFCSGSWDHTLRVW 353
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 54 GHGHAINELKFHP-QDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDL 112
G +N + ++P D +++ S D T+++W+ +T C+A +EGH V A F
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT---LEGHMSNVSFAVFHP 238
Query: 113 LGTKIMSCGMDHSLKLWDLTKPEIK 137
I+S D +LK+W+ + +++
Sbjct: 239 TLPIIISGSEDGTLKIWNSSTYKVE 263
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 26 RPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWN 85
+P + A I+I+ +CV GH ++ FHP +++S S+D TL++WN
Sbjct: 198 KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWN 256
Query: 86 IKT 88
T
Sbjct: 257 SST 259
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 47 ACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVL 106
A + F GH H + + F+P+D + S D T+++W++ F G V
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFTLTTGQERGVN 188
Query: 107 SADFDLLGTK--IMSCGMDHSLKLWD 130
D+ L K +++ D ++K+WD
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWD 214
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 54 GHGHAINELKFHP-QDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDL 112
G +N + ++P D +++ S D T+++W+ +T C+A +EGH V A F
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT---LEGHMSNVSFAVFHP 238
Query: 113 LGTKIMSCGMDHSLKLWD 130
I+S D +LK+W+
Sbjct: 239 TLPIIISGSEDGTLKIWN 256
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 26 RPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWN 85
+P + A I+I+ +CV GH ++ FHP +++S S+D TL++WN
Sbjct: 198 KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWN 256
Query: 86 IKT 88
T
Sbjct: 257 SST 259
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 47 ACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVL 106
A + F GH H + + F+P+D + S D T+++W++ F G V
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFTLTTGQERGVN 188
Query: 107 SADFDLLGTK--IMSCGMDHSLKLWD 130
D+ L K +++ D ++K+WD
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWD 214
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 28 LLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWN 85
LLA S ++++ C +GH +++N +F P D LL S S D TL+LW+
Sbjct: 721 LLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD-KLLASCSADGTLKLWD 777
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 8/124 (6%)
Query: 10 EENFYTCAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDF 69
E+ CA+S D +A ++I++ V + H +N F
Sbjct: 663 EDEVLCCAFSTD----DRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSH 718
Query: 70 NLLLSV-SKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKL 128
+LLL+ S D L+LW++ C + GH + V F + SC D +LKL
Sbjct: 719 HLLLATGSSDCFLKLWDLNQKEC---RNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKL 775
Query: 129 WDLT 132
WD T
Sbjct: 776 WDAT 779
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 29 LAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKT 88
+A I I + + + H + ++F D L+S S D +++WN +
Sbjct: 982 IAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQF-TADEKTLISSSDDAEIQVWNWQL 1040
Query: 89 DICIAIFGGVEGHRDEVLSADFDLL-GTKIMSCGMDHSLKLWDL 131
D CI + GH++ V DF LL ++++S D ++K+W++
Sbjct: 1041 DKCIFL----RGHQETV--KDFRLLKNSRLLSWSFDGTVKVWNI 1078
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 16/124 (12%)
Query: 17 AWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVS 76
W + + L + A I++++ C+ GH + + + + LLS S
Sbjct: 1012 VWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI-FLRGHQETVKDFRLLKN--SRLLSWS 1068
Query: 77 KDHTLRLWNIKTDICIAIFGGVEG----HRDEVLSADFDLLGTKIMSCGMDHSLKLW--D 130
D T+++WNI I G E H+ VLS D TK S D + K+W D
Sbjct: 1069 FDGTVKVWNI-------ITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFD 1121
Query: 131 LTKP 134
L P
Sbjct: 1122 LLLP 1125
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 8/118 (6%)
Query: 16 CAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSV 75
C+WS D R ++A + I + + GH I F PQ+ ++++
Sbjct: 810 CSWSAD--GARIMVAAKNKIFLFDIHTSGLLGEIH--TGHHSTIQYCDFSPQNHLAVVAL 865
Query: 76 SKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTK 133
S+ + + LWN + +A GH V F G+ ++ D +++LW+ K
Sbjct: 866 SQ-YCVELWNTDSRSKVA---DCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKK 919
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 20/104 (19%)
Query: 34 SRAVIRIFSPA-FHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICI 92
SR V+R + A +HAC +D + S D TL+++ +T +
Sbjct: 613 SRLVVRPHTDAVYHACF----------------SEDGQRIASCGADKTLQVFKAETGEKL 656
Query: 93 AIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEI 136
++ H DEVL F I +C +D +K+W+ E+
Sbjct: 657 L---EIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGEL 697
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLL 113
H +N L F+P +L + S D T+ LW+++ E H+DE+ +
Sbjct: 275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN--LKLKLHSFESHKDEIFQVQWSPH 332
Query: 114 GTKIM-SCGMDHSLKLWDLTK 133
I+ S G D L +WDL+K
Sbjct: 333 NETILASSGTDRRLHVWDLSK 353
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 52 FYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFD 111
F GH + ++ +H +L SV+ D L +W+ + + V+ H EV F+
Sbjct: 227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 286
Query: 112 LLGTKIMSCG-MDHSLKLWDLTKPEIKDACAESY 144
I++ G D ++ LWDL ++K ES+
Sbjct: 287 PYSEFILATGSADKTVALWDLRNLKLKLHSFESH 320
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 83/210 (39%), Gaps = 45/210 (21%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNI----KTDICIAIFGGVEGHRDEVLSAD 109
GH L ++P LLS S DHT+ LW+I K I GH V
Sbjct: 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 238
Query: 110 FDLLGTKIM-SCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFDTQKEHFPQFSTR 168
+ LL + S D L +WD TR +T K T
Sbjct: 239 WHLLHESLFGSVADDQKLMIWD---------------------TRNNNTSKPSH----TV 273
Query: 169 DIHRNYVDCVRW--LGDFVLSK-SCENCIICWKPGRLEDKELRTNETNVTIINRLNFKDC 225
D H V+C+ + +F+L+ S + + W L+ K L + E++ KD
Sbjct: 274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-LHSFESH---------KD- 322
Query: 226 EIWFIRFSMDYWQKILAVGNQSGRTYVWDL 255
EI+ +++S + + ILA R +VWDL
Sbjct: 323 EIFQVQWSP-HNETILASSGTDRRLHVWDL 351
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLL 113
H +N L F+P +L + S D T+ LW+++ E H+DE+ +
Sbjct: 277 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN--LKLKLHSFESHKDEIFQVQWSPH 334
Query: 114 GTKIM-SCGMDHSLKLWDLTK 133
I+ S G D L +WDL+K
Sbjct: 335 NETILASSGTDRRLHVWDLSK 355
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 52 FYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFD 111
F GH + ++ +H +L SV+ D L +W+ + + V+ H EV F+
Sbjct: 229 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 288
Query: 112 LLGTKIMSCG-MDHSLKLWDLTKPEIKDACAESY 144
I++ G D ++ LWDL ++K ES+
Sbjct: 289 PYSEFILATGSADKTVALWDLRNLKLKLHSFESH 322
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 83/210 (39%), Gaps = 45/210 (21%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNI----KTDICIAIFGGVEGHRDEVLSAD 109
GH L ++P LLS S DHT+ LW+I K I GH V
Sbjct: 181 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 240
Query: 110 FDLLGTKIM-SCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFDTQKEHFPQFSTR 168
+ LL + S D L +WD TR +T K T
Sbjct: 241 WHLLHESLFGSVADDQKLMIWD---------------------TRNNNTSKPSH----TV 275
Query: 169 DIHRNYVDCVRW--LGDFVLSK-SCENCIICWKPGRLEDKELRTNETNVTIINRLNFKDC 225
D H V+C+ + +F+L+ S + + W L+ K L + E++ KD
Sbjct: 276 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-LHSFESH---------KD- 324
Query: 226 EIWFIRFSMDYWQKILAVGNQSGRTYVWDL 255
EI+ +++S + + ILA R +VWDL
Sbjct: 325 EIFQVQWSP-HNETILASSGTDRRLHVWDL 353
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLL 113
H +N L F+P +L + S D T+ LW+++ E H+DE+ +
Sbjct: 271 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN--LKLKLHSFESHKDEIFQVQWSPH 328
Query: 114 GTKIM-SCGMDHSLKLWDLTK 133
I+ S G D L +WDL+K
Sbjct: 329 NETILASSGTDRRLNVWDLSK 349
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 52 FYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFD 111
F GH + ++ +H +L SV+ D L +W+ +++ V+ H EV F+
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282
Query: 112 LLGTKIMSCG-MDHSLKLWDLTKPEIKDACAESY 144
I++ G D ++ LWDL ++K ES+
Sbjct: 283 PYSEFILATGSADKTVALWDLRNLKLKLHSFESH 316
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 83/210 (39%), Gaps = 45/210 (21%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNI----KTDICIAIFGGVEGHRDEVLSAD 109
GH L ++P LLS S DHT+ LW+I K + GH V
Sbjct: 175 GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVS 234
Query: 110 FDLLGTKIM-SCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFDTQKEHFPQFSTR 168
+ LL + S D L +WD TR +T K P S
Sbjct: 235 WHLLHESLFGSVADDQKLMIWD---------------------TRSNNTSK---PSHSV- 269
Query: 169 DIHRNYVDCVRW--LGDFVLSK-SCENCIICWKPGRLEDKELRTNETNVTIINRLNFKDC 225
D H V+C+ + +F+L+ S + + W L+ K L + E++ KD
Sbjct: 270 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-LHSFESH---------KD- 318
Query: 226 EIWFIRFSMDYWQKILAVGNQSGRTYVWDL 255
EI+ +++S + + ILA R VWDL
Sbjct: 319 EIFQVQWSP-HNETILASSGTDRRLNVWDL 347
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKT-DICIAIFGGVEGHRDEVLSADFDL 112
H +N L F+P +L + S D T+ LW+++ + + F E H+DE+ +
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF---ESHKDEIFQVHWSP 329
Query: 113 LGTKIM-SCGMDHSLKLWDLTK 133
I+ S G D L +WDL+K
Sbjct: 330 HNETILASSGTDRRLNVWDLSK 351
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 52 FYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFD 111
F GH + ++ +H +L SV+ D L +W+ +++ V+ H EV F+
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 112 LLGTKIMSCG-MDHSLKLWDLTKPEIKDACAESY 144
I++ G D ++ LWDL ++K ES+
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESH 318
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKT-DICIAIFGGVEGHRDEVLSADFDL 112
H +N L F+P +L + S D T+ LW+++ + + F E H+DE+ +
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF---ESHKDEIFQVHWSP 329
Query: 113 LGTKIM-SCGMDHSLKLWDLTK 133
I+ S G D L +WDL+K
Sbjct: 330 HNETILASSGTDRRLNVWDLSK 351
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 52 FYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFD 111
F GH + ++ +H +L SV+ D L +W+ +++ V+ H EV F+
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 112 LLGTKIMSCG-MDHSLKLWDLTKPEIKDACAESY 144
I++ G D ++ LWDL ++K ES+
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESH 318
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLL 113
H +N L F+P +L + S D T+ LW+++ E H+DE+ +
Sbjct: 279 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN--LKLKLHSFESHKDEIFQVQWSPH 336
Query: 114 GTKIM-SCGMDHSLKLWDLTK 133
I+ S G D L +WDL+K
Sbjct: 337 NETILASSGTDRRLHVWDLSK 357
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 52 FYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFD 111
F GH + ++ +H +L SV+ D L +W+ + + V+ H EV F+
Sbjct: 231 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 290
Query: 112 LLGTKIMSCG-MDHSLKLWDLTKPEIKDACAESY 144
I++ G D ++ LWDL ++K ES+
Sbjct: 291 PYSEFILATGSADKTVALWDLRNLKLKLHSFESH 324
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 83/210 (39%), Gaps = 45/210 (21%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNI----KTDICIAIFGGVEGHRDEVLSAD 109
GH L ++P LLS S DHT+ LW+I K I GH V
Sbjct: 183 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 242
Query: 110 FDLLGTKIM-SCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFDTQKEHFPQFSTR 168
+ LL + S D L +WD TR +T K T
Sbjct: 243 WHLLHESLFGSVADDQKLMIWD---------------------TRNNNTSKPSH----TV 277
Query: 169 DIHRNYVDCVRW--LGDFVLSK-SCENCIICWKPGRLEDKELRTNETNVTIINRLNFKDC 225
D H V+C+ + +F+L+ S + + W L+ K L + E++ KD
Sbjct: 278 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-LHSFESH---------KD- 326
Query: 226 EIWFIRFSMDYWQKILAVGNQSGRTYVWDL 255
EI+ +++S + + ILA R +VWDL
Sbjct: 327 EIFQVQWSP-HNETILASSGTDRRLHVWDL 355
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLL 113
GH + ++K++ ++ +LL S SKD + +W + G ++GH + S D D
Sbjct: 30 GHERPLTQVKYN-KEGDLLFSCSKDSSASVW---YSLNGERLGTLDGHTGTIWSIDVDCF 85
Query: 114 GTKIMSCGMDHSLKLWDLT 132
++ D+S+KLWD++
Sbjct: 86 TKYCVTGSADYSIKLWDVS 104
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 19 SMDLESGRPLLAVAGSR-AVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSK 77
S+D + RP ++GS + IF F H ++ ++++P D +L S
Sbjct: 152 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGG 210
Query: 78 DHTLRLWNIKTDICIAIFGGVE----GHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTK 133
D T+ L+N +F H V + GTKI S D ++K+W++
Sbjct: 211 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 270
Query: 134 PEIK 137
+++
Sbjct: 271 LKVE 274
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLL 113
GH + + +HP N+LLS D+ + +W++ T + G + H D + S D+
Sbjct: 129 GHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTL-GPDVHPDTIYSVDWSRD 187
Query: 114 GTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRP 154
G I + D ++ + +P AE P TRP
Sbjct: 188 GALICTSCRDKRVR---VIEPRKGTVVAEKD--RPHEGTRP 223
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFG----GVEGHRDEV-LSA 108
GH + ++ + P + N++ S S+D T+ +W I + +EGH V + A
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 109 DFDLLGTKIMSCGMDHSLKLWDL 131
++S G D+ + +WD+
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDV 161
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 14 YTCAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLL 73
YT + L+ R +L + I++ F+ H I +LKF P L+
Sbjct: 96 YTAVDTAKLQMRRFILGT--TEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSG-EALI 152
Query: 74 SVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
S S+D L++W++K + GHR V G ++S +D +++LW+
Sbjct: 153 SSSQDMQLKIWSVKDGSNPRT---LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 6/125 (4%)
Query: 6 SLLIEENFYTCAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFH 65
S +++ YT + L+ R +L + I++ F+ H I +LKF
Sbjct: 91 SKMLKRADYTAVDTAKLQMRRFILGT--TEGDIKVLDSNFNLQREIDQAHVSEITKLKFF 148
Query: 66 PQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHS 125
P L+S S+D L++W++K + GHR V G ++S +D +
Sbjct: 149 PSG-EALISSSQDMQLKIWSVKDGSNPRT---LIGHRATVTDIAIIDRGRNVLSASLDGT 204
Query: 126 LKLWD 130
++LW+
Sbjct: 205 IRLWE 209
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLL 113
GH + + +HP N+LLS D+ + +W++ T + G + H D + S D+
Sbjct: 129 GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL-GPDVHPDTIYSVDWSRD 187
Query: 114 GTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRP 154
G I + D ++ + +P AE P TRP
Sbjct: 188 GALICTSCRDKRVR---VIEPRKGTVVAEKD--RPHEGTRP 223
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFG----GVEGHRDEV-LSA 108
GH + ++ + P + N++ S S+D T+ +W I + +EGH V + A
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 109 DFDLLGTKIMSCGMDHSLKLWDL 131
++S G D+ + +WD+
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDV 161
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 46 HACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTD--ICIAIFGGVEGHRD 103
+ C+ H + + +HP + LL S S D T+R+W D C+A+ G EG
Sbjct: 143 YECISVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG--- 198
Query: 104 EVLSADFDLLGT--KIMSCGMDHSLKLW 129
V S+DFD ++ S D ++++W
Sbjct: 199 TVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 11/121 (9%)
Query: 18 WSMDLESGRPLLAVAGSRAVIRIFSPAFHAC----VRHFYGHGHAINELKFHPQDFNLLL 73
WS D G +LA + I++ S + V H AI + + P +LL
Sbjct: 18 WSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH-TSLLA 74
Query: 74 SVSKDHTLRLW----NIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLW 129
+ S D T+ +W + + + +EGH +EV + G + +C D S+ +W
Sbjct: 75 AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIW 134
Query: 130 D 130
+
Sbjct: 135 E 135
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 19 SMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKD 78
S+ LL A I+I+ GH + + F P D + + S S
Sbjct: 211 SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSD- 269
Query: 79 HTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
++++W++ T C+ F H+D+V ++ G+KI+S G D + ++D
Sbjct: 270 KSVKVWDVGTRTCVHTF---FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 29 LAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKT 88
LA +I IF A + GH I L F P D LL++ S D +++++++
Sbjct: 179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQ- 236
Query: 89 DICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
+ G + GH VL+ F T +S D S+K+WD+
Sbjct: 237 --HANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 42/211 (19%), Positives = 77/211 (36%), Gaps = 36/211 (17%)
Query: 28 LLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNI- 86
L+AV +++ +C GH I + + P+ +L + S D ++LW++
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 87 KTDICI------------AIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKP 134
+ C+ A+ H +V F G +++ G D+ ++LW+ +
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
Query: 135 E--------------------IKDACAESYTFNPARSTRPFDTQKEHFPQFSTRDIHRNY 174
E + C+ + F P ST T Q + H
Sbjct: 278 ENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG-EQITMLKGHYKT 336
Query: 175 VDCVRWLGDF--VLSKSCENCIICWKPGRLE 203
VDC + +F + S S + I+ W P E
Sbjct: 337 VDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 16/92 (17%)
Query: 19 SMDLE--SGRPLLAVAGSRAVIRIFS------PAFHACVR-------HFYGHGHAINELK 63
++D+E GR +L+ GS VI ++ +++ C H H +++ ++
Sbjct: 48 TLDIEPVEGRYMLS-GGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQ 106
Query: 64 FHPQDFNLLLSVSKDHTLRLWNIKTDICIAIF 95
++P D + S S D TL++W+ T +F
Sbjct: 107 WYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF 138
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 68 DFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLK 127
D + S D + +W++ + F +GH D D GTK+ + G+D++++
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQF---QGHTDGASCIDISNDGTKLWTGGLDNTVR 208
Query: 128 LWDL 131
WDL
Sbjct: 209 SWDL 212
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 22 LESGRPL--LAVAGSRAVIRIFSPAFH--ACVRHFYGHGHAINELKFHPQDFNLLLSVSK 77
L+ RP+ + V +V+ P F A R + G + +++F P +++V
Sbjct: 168 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 227
Query: 78 DHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLL---GTKIMSCGMDHSLKLWDLTKP 134
D + ++ K+ + +E ++ V F L K + G D ++++WD+T
Sbjct: 228 DRKISCFDGKSGEFLKY---IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS 284
Query: 135 EIKDACAESYTFN 147
+ C + +T +
Sbjct: 285 K----CVQKWTLD 293
>pdb|4FHL|A Chain A, Nucleoporin Nup37 From Schizosaccharomyces Pombe
pdb|4FHM|A Chain A, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
pdb|4FHN|A Chain A, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|C Chain C, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 394
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 11/75 (14%)
Query: 69 FNLLLS-VSKDHTLRLWNIKTDICIA--IFGGVEGHRD--------EVLSADFDLLGTKI 117
++L L+ V +D+T+RL K + I + GG GH + +V SAD L I
Sbjct: 101 YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVI 160
Query: 118 MSCGMDHSLKLWDLT 132
S G D +L +W LT
Sbjct: 161 ASVGDDCTLIIWRLT 175
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 45 FHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDE 104
F A R + G + +++F P +++V D + ++ K+ + +E ++
Sbjct: 195 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY---IEDDQEP 251
Query: 105 VLSADFDLL---GTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFN 147
V F L K + G D ++++WD+T + C + +T +
Sbjct: 252 VQGGIFALSWLDSQKFATVGADATIRVWDVTTSK----CVQKWTLD 293
>pdb|4GQ1|A Chain A, Nup37 Of S. Pombe
pdb|4GQ2|P Chain P, S. Pombe Nup120-Nup37 Complex
Length = 393
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 72 LLSVSKDHTLRLWNIKTDICIA--IFGGVEGHRD--------EVLSADFDLLGTKIMSCG 121
L V +D+T+RL K + I + GG GH + +V SAD L I S G
Sbjct: 104 LACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163
Query: 122 MDHSLKLWDLT 132
D +L +W LT
Sbjct: 164 DDCTLIIWRLT 174
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 72 LLSVSKDHTLRLWNI--KTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLW 129
+L S + LW I K + + F E H D V + GT+ +S G D S+K+W
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYE-HDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166
Query: 130 DLTKPEI 136
DL++ +
Sbjct: 167 DLSQKAV 173
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 67 QDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEV-LSADFDLLGTKIMSCGMDHS 125
D +S KD ++++W++ A+ H EV A T +SCG D
Sbjct: 149 SDGTQAVSGGKDFSVKVWDLSQK---AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGR 205
Query: 126 LKLWDLTKPE--------IKDACAESYTFNPAR 150
+ LWD KP+ D S T++P +
Sbjct: 206 ILLWDTRKPKPATRIDFCASDTIPTSVTWHPEK 238
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 58 AINELKFHPQDF--NLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGT 115
+I L F P N L++ S + +R W ++ D I + H VL + G+
Sbjct: 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQ-DSGQTIPKAQQMHTGPVLDVCWSDDGS 99
Query: 116 KIMSCGMDHSLKLWDLT 132
K+ + D + K+WDL+
Sbjct: 100 KVFTASCDKTAKMWDLS 116
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 189 SCENCIICWKPGRLEDKELR---TNETNVTI--INRLNFKDCEIWFIRFSMDYWQKILAV 243
S N II G L++ L TNE N I + R + + ++F+ +LA
Sbjct: 76 SHNNKIIA---GALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ-DNVLAS 131
Query: 244 GNQSGRTYVWDLDVQDPSSIKFQILSHPRCMSAVRQ 279
G +G ++WD++ S + L+ + MS+V +
Sbjct: 132 GGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIF 95
GH I L + QD +LLLS +D+T+ LWN ++ ++ F
Sbjct: 260 GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF 301
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 20/175 (11%)
Query: 6 SLLIEENFYTCAWSMDLESGRPLLAVAGSRAVIRIFSP-----AFHACVRHFYGHGHAIN 60
SL ++ F WS + ++A A + ++S A ++ R F H ++
Sbjct: 63 SLQVDSKFNDLDWSHN----NKIIAGALDNGSLELYSTNEANNAINSMAR-FSNHSSSVK 117
Query: 61 ELKFHPQDFNLLLSVSKDHTLRLWNIK------TDICIAIFGGVEGHRDEVLSADFDL-L 113
+KF+ + N+L S + + +W++ ++ G DEV+S ++ L
Sbjct: 118 TVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL 177
Query: 114 GTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFDTQKEHFPQFSTR 168
S G + +WDL K+ SYT +P + + E P+ STR
Sbjct: 178 AHVFASAGSSNFASIWDLKAK--KEVIHLSYT-SPNSGIKQQLSVVEWHPKNSTR 229
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 5/129 (3%)
Query: 2 STRYSLLIEENFYTCAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINE 61
S S L E + T S+ L+V ++ I+ +R GH +
Sbjct: 122 SGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGC 181
Query: 62 LKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCG 121
L + + ++L S S+ + +++ I G ++GH EV + G ++ S G
Sbjct: 182 LSW---NRHVLSSGSRSGAIHHHDVR--IANHQIGTLQGHSSEVCGLAWRSDGLQLASGG 236
Query: 122 MDHSLKLWD 130
D+ +++WD
Sbjct: 237 NDNVVQIWD 245
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 101 HRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
H D + A D GT++ +C D S+K++D+
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDV 42
>pdb|3A5Y|A Chain A, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|B Chain B, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|C Chain C, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|D Chain D, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
Length = 345
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 115 TKIMSCGMDHSLKLWDLTKPE------IKDACAESYTFNPARSTRPFDTQKEHFPQFSTR 168
T+ + G + LW +T PE + C F RS R + + H P+F+
Sbjct: 78 TRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGP--VFQLCRSFRNEEMGRYHNPEFTML 135
Query: 169 DIHRNYVDCVRWLGD 183
+ +R + D R + +
Sbjct: 136 EWYRPHYDMYRLMNE 150
>pdb|3A5Z|A Chain A, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|C Chain C, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|E Chain E, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|G Chain G, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
Length = 328
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 115 TKIMSCGMDHSLKLWDLTKPE------IKDACAESYTFNPARSTRPFDTQKEHFPQFSTR 168
T+ + G + LW +T PE + C F RS R + + H P+F+
Sbjct: 61 TRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGP--VFQLCRSFRNEEMGRYHNPEFTML 118
Query: 169 DIHRNYVDCVRWLGD 183
+ +R + D R + +
Sbjct: 119 EWYRPHYDMYRLMNE 133
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 13/117 (11%)
Query: 16 CAWSMDLESGRPLLAVAG--SRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLL 73
C W ++ LA G S IRI++ AC+ H + L + P L+
Sbjct: 285 CPWQSNV------LATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL-WSPHYKELIS 337
Query: 74 SVS-KDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLW 129
+ L +W T +A ++GH VLS G + S D +L+LW
Sbjct: 338 GHGFAQNQLVIWKYPT---MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 81 LRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLW 129
L +W T +A ++GH VLS G + S D +L+LW
Sbjct: 357 LVIWKYPT---MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 38 IRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVS-KDHTLRLWNIKTDICIAIFG 96
IRI++ AC+ H + L + P L+ + L +W T +A
Sbjct: 223 IRIWNVCSGACLSAVDAHSQVCSIL-WSPHYKELISGHGFAQNQLVIWKYPT---MAKVA 278
Query: 97 GVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLW 129
++GH VLS G + S D +L+LW
Sbjct: 279 ELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 47 ACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVL 106
+CV H + L F P L S+S+D +L + D ++ + HRD V
Sbjct: 248 SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAV----LDSSLSELFRSQAHRDFVR 303
Query: 107 SADFDLLGTKIM-SCGMDHSL 126
A + L ++ + G DH +
Sbjct: 304 DATWSPLNHSLLTTVGWDHQV 324
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 23/139 (16%)
Query: 17 AWSMDLESGRPLLAVAGSRAVIRI-----FSPAFHACVRH-FYGHGHAINELKFHPQDFN 70
A S+D+ S R L+A + ++I P ++ +H + ++I +KF PQ
Sbjct: 189 ATSVDI-SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ--G 245
Query: 71 LLLSVSKDHT----LRLWNIKTDICIAIFG----------GVEGHRDEVLSADFDLLGTK 116
LL+++ D + L+ + I G H V+S F+ G
Sbjct: 246 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET 305
Query: 117 IMSCGMDHSLKLWDLTKPE 135
+ S G D L+ WD+ E
Sbjct: 306 LCSAGWDGKLRFWDVKTKE 324
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,196,941
Number of Sequences: 62578
Number of extensions: 375447
Number of successful extensions: 1507
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1022
Number of HSP's gapped (non-prelim): 291
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)