RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10348
(291 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 68.6 bits (166), Expect = 7e-14
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 4/119 (3%)
Query: 12 NFYTCAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNL 71
+ T + + P L I+++ + C+ GH + + + FH
Sbjct: 203 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKF 261
Query: 72 LLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
+LS + D TLR+W+ K C+ H V S DF +++ +D ++K+W+
Sbjct: 262 ILSCADDKTLRVWDYKNKRCMKTL---NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
Score = 54.0 bits (128), Expect = 6e-09
Identities = 35/204 (17%), Positives = 69/204 (33%), Gaps = 52/204 (25%)
Query: 16 CAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQ-------- 67
+ L+A + +R++ A C H H + + + P+
Sbjct: 145 WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISE 204
Query: 68 -----------DFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTK 116
LLS S+D T+++W++ T +C+ GH + V F G
Sbjct: 205 ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL---VGHDNWVRGVLFHSGGKF 261
Query: 117 IMSCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFDTQKEHFPQFSTRDIHRNYVD 176
I+SC D +L++WD T + H ++V
Sbjct: 262 ILSCADDKTLRVWDYKNKRC----------------------------MKTLNAHEHFVT 293
Query: 177 CVRWL--GDFVLSKSCENCIICWK 198
+ + +V++ S + + W+
Sbjct: 294 SLDFHKTAPYVVTGSVDQTVKVWE 317
Score = 49.7 bits (117), Expect = 1e-07
Identities = 41/244 (16%), Positives = 78/244 (31%), Gaps = 28/244 (11%)
Query: 13 FYTCAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLL 72
S+ + + A I+++ CV+ F GH + ++ + D L+
Sbjct: 100 HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLI 158
Query: 73 LSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLT 132
S S D T+R+W + T C A HR V + + S
Sbjct: 159 ASCSNDQTVRVWVVATKECKAEL---REHRHVVECISWAPESSYSSISEATGSETKKSGK 215
Query: 133 KPEIKDACAESYTFNPARSTRPFDTQKEHFPQFSTRDIHRNYVDCVRWL--GDFVLSKSC 190
+ + ++ + +D T H N+V V + G F+LS +
Sbjct: 216 PGPFLLSGSRD------KTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHSGGKFILSCAD 267
Query: 191 ENCIICWKPGRLEDKELRTNETNVTIINRLNFKDCEIWFIRFSMDYWQKILAVGNQSGRT 250
+ + W + N + LN + + + F + G+
Sbjct: 268 DKTLRVW------------DYKNKRCMKTLNAHEHFVTSLDFHKT--APYVVTGSVDQTV 313
Query: 251 YVWD 254
VW+
Sbjct: 314 KVWE 317
Score = 47.0 bits (110), Expect = 1e-06
Identities = 44/280 (15%), Positives = 83/280 (29%), Gaps = 64/280 (22%)
Query: 18 WSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQ---------- 67
+ ++ A A I+++ R GH ++ ++ F
Sbjct: 21 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD 80
Query: 68 -------------------------------DFNLLLSVSKDHTLRLWNIKTDICIAIFG 96
+ + ++S S+D T+++W ++T C+ F
Sbjct: 81 MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF- 139
Query: 97 GVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFD 156
GHR+ V + GT I SC D ++++W + E K R
Sbjct: 140 --TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK------AELREHRHVVECI 191
Query: 157 TQKEHFPQFSTRDIHRNYVDCVRWLGDFVLSKSCENCIICWKPGRLEDKELRTNETNVTI 216
+ S + + G F+LS S + I W + +
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW------------DVSTGMC 239
Query: 217 INRLNFKDCEIWFIRFSMDYWQKILAVGNQSGRTYVWDLD 256
+ L D + + F K + VWD
Sbjct: 240 LMTLVGHDNWVRGVLFHSG--GKFILSCADDKTLRVWDYK 277
Score = 45.9 bits (107), Expect = 2e-06
Identities = 39/211 (18%), Positives = 70/211 (33%), Gaps = 12/211 (5%)
Query: 49 VRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSA 108
GH + + FHP F++++S S+D T+++W+ +T +GH D V
Sbjct: 10 KYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTL---KGHTDSVQDI 65
Query: 109 DFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFDTQKEHFPQFSTR 168
FD G + SC D ++KLWD E + S P + T
Sbjct: 66 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 125
Query: 169 DIHRNYVDCVRWLGDFVLSKSCENCIICWKPGRL-----EDKELRTNETNVTIINRLNFK 223
+ V + F + + + G L D+ +R T + +
Sbjct: 126 KMW--EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA-TKECKAELR 182
Query: 224 DCEIWFIRFSMDYWQKILAVGNQSGRTYVWD 254
+ S ++ +G
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKS 213
Score = 39.7 bits (91), Expect = 2e-04
Identities = 19/166 (11%), Positives = 44/166 (26%), Gaps = 6/166 (3%)
Query: 99 EGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFDTQ 158
GHR V F + + ++S D ++K+WD + + + + +
Sbjct: 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL--KGHTDSVQDISFDHSG 71
Query: 159 KEHFPQFSTRDIHRNYVDCVRWLGDFVLSKSCENCIICWKPGRLEDKELRTNETNVTIIN 218
K + I + + + G R + +
Sbjct: 72 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131
Query: 219 RLN----FKDCEIWFIRFSMDYWQKILAVGNQSGRTYVWDLDVQDP 260
F W + ++A + VW + ++
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 177
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 61.7 bits (148), Expect = 2e-11
Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 6/115 (5%)
Query: 18 WSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGH--AINELKFHPQDFNLLLSV 75
++ A A R+F + + I + F LLL+
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAG 288
Query: 76 SKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
D +W+ + GH + V G + + D LK+W+
Sbjct: 289 YDDFNCNVWDALKADRAGVL---AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 51.3 bits (121), Expect = 4e-08
Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 32/162 (19%)
Query: 38 IRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGG 97
+++ C + F GH IN + F P + N + S D T RL++++ D + +
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQEL-MTYS 265
Query: 98 VEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFDT 157
+ + S F G +++ D + +WD K +
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD---------------------- 303
Query: 158 QKEHFPQFSTRDIHRNYVDCVRWL--GDFVLSKSCENCIICW 197
+ H N V C+ G V + S ++ + W
Sbjct: 304 ------RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 46.3 bits (108), Expect = 2e-06
Identities = 34/251 (13%), Positives = 72/251 (28%), Gaps = 17/251 (6%)
Query: 48 CVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLS 107
R GH I + + D LL+S S+D L +W+ T + V++
Sbjct: 47 TRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAI---PLRSSWVMT 102
Query: 108 ADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFDTQKEHFPQFST 167
+ G + G+D+ +++L E + + + S
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 168 RDIHRNYVDCVRWLGDFVLSKSCENCIICWKPGR------LEDKELRT-NETNVTIINRL 220
+ + + + P D + +
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Query: 221 NFKDCEIWFIRFSMDYWQKILAVGNQSGRTYVWDLDVQDPSSIKFQILSHPRCMSAVRQT 280
+ +I I F + A G+ ++ + + SH + +
Sbjct: 223 TGHESDINAICFFPN--GNAFATGSDDATCRLF----DLRADQELMTYSHDNIICGITSV 276
Query: 281 TLSKNGNVLLC 291
+ SK+G +LL
Sbjct: 277 SFSKSGRLLLA 287
Score = 45.9 bits (107), Expect = 2e-06
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Query: 12 NFYTCAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNL 71
N S+ LL ++ GH + ++ L D
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMA 326
Query: 72 LLSVSKDHTLRLWN 85
+ + S D L++WN
Sbjct: 327 VATGSWDSFLKIWN 340
Score = 45.5 bits (106), Expect = 3e-06
Identities = 26/211 (12%), Positives = 58/211 (27%), Gaps = 45/211 (21%)
Query: 46 HACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEV 105
+ D L +S + D + +LW+++ +C F GH ++
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDI 229
Query: 106 LSADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFDTQKEHFPQF 165
+ F G + D + +L+ D + +
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLF--------------------------DLRADQELMT 263
Query: 166 STRDIHRNYVDCVRWL--GDFVLSKSCENCIICWKPGRLEDKELRTNETNVTIINRLNFK 223
+ D + V + G +L+ + W + L
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW------------DALKADRAGVLAGH 311
Query: 224 DCEIWFIRFSMDYWQKILAVGNQSGRTYVWD 254
D + + + D +A G+ +W+
Sbjct: 312 DNRVSCLGVTDD--GMAVATGSWDSFLKIWN 340
Score = 34.3 bits (77), Expect = 0.015
Identities = 27/239 (11%), Positives = 59/239 (24%), Gaps = 19/239 (7%)
Query: 59 INELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIM 118
I + + D L + + ++T + GH ++ + + ++
Sbjct: 18 IRDARKACADATLSQITNNIDPVGRIQMRTRRTL------RGHLAKIYAMHWGTDSRLLV 71
Query: 119 SCGMDHSLKLWDLTKPEIKDACAE------SYTFNPARSTRPFDTQKEHFPQFSTRDIHR 172
S D L +WD A + + P+ + ++ +
Sbjct: 72 SASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG 131
Query: 173 NYVDCVRWLGDFVLSKSCENCIICWKPGRLEDKELRTNETNVTIINRLNFKDCEIWFIRF 232
N G C D + F +
Sbjct: 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT-TFTGHTGDVMSL 190
Query: 233 SMDYWQKILAVGNQSGRTYVWDLDVQDPSSIKFQILSHPRCMSAVRQTTLSKNGNVLLC 291
S+ ++ G +WD+ + H ++A+ NGN
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDV---REGMCRQTFTGHESDINAI---CFFPNGNAFAT 243
Score = 30.1 bits (66), Expect = 0.28
Identities = 37/290 (12%), Positives = 81/290 (27%), Gaps = 35/290 (12%)
Query: 18 WSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSK 77
++M + LL A + I+ V + + N +
Sbjct: 59 YAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA-PSGNYVACGGL 117
Query: 78 DHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIK 137
D+ ++N+KT LS L +I++ D + LWD+ +
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT 177
Query: 138 DACAESYTFNPARSTRPFDTQKEHFPQFSTRDI--------------HRNYVDCVRWL-- 181
+ S P ++ + H + ++ + +
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN 237
Query: 182 GDFVLSKSCENCIICWKPGRLEDKELRTNETNVTIINRLNFKDCEIWFIRFSMDYWQKIL 241
G+ + S + + + + C I + FS ++L
Sbjct: 238 GNAFATGSDDATCRLFDL----------RADQELMTYSHDNIICGITSVSFSKS--GRLL 285
Query: 242 AVGNQSGRTYVWDLDVQDPSSIKFQILSHPRCMSAVRQTTLSKNGNVLLC 291
G VWD D + + + H + V ++ +G +
Sbjct: 286 LAGYDDFNCNVWDALKADRAGV---LAGHD---NRVSCLGVTDDGMAVAT 329
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 57.5 bits (137), Expect = 4e-10
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 5/87 (5%)
Query: 45 FHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDE 104
+ H + LKF +S KD+ L W I
Sbjct: 254 NKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSK----ESSS 308
Query: 105 VLSADFDLLGTKIMSCGMDHSLKLWDL 131
VLS D + I++ D ++++
Sbjct: 309 VLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 39.0 bits (89), Expect = 4e-04
Identities = 21/218 (9%), Positives = 54/218 (24%), Gaps = 10/218 (4%)
Query: 24 SGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRL 83
G+ A+I P HA + HG + + + + +++
Sbjct: 20 DGQMQPVPFPPDALIGPGIP-RHARQINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKV 76
Query: 84 WNIKTDICIAIFGGVE--GHRDEVLSADFDLLGTKIMSCG-----MDHSLKLWDLTKPEI 136
W+I + ++ + + S G ++ G L
Sbjct: 77 WDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAE 136
Query: 137 KDACAESYTFNPARSTRPFDTQKEHFPQFSTRDIHRNYVDCVRWLGDFVLSKSCENCIIC 196
+ A + + D+H + S +
Sbjct: 137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT 196
Query: 197 WKPGRLEDKELRTNETNVTIINRLNFKDCEIWFIRFSM 234
D +R+ + + + +I+ + +
Sbjct: 197 KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP 234
Score = 30.5 bits (67), Expect = 0.23
Identities = 25/271 (9%), Positives = 59/271 (21%), Gaps = 20/271 (7%)
Query: 29 LAVAGSRAVIRIFSPAFHACVR-----HFYGHGHAINELKFHPQDFNLLLSVSKDHTLRL 83
G + ++++ + + I K P D L+ + TL +
Sbjct: 65 HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSI 123
Query: 84 WNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAES 143
W++ A C S + + +
Sbjct: 124 WDLAAPTPRIKAELTSSAPACYALAISP----DSKVCFSCCSDGNIAVWDLHNQTLVRQF 179
Query: 144 YTFNPARSTRPFDTQKEHFPQFSTRDIHRNYVDCVRWLGDFVLSKSCENCIICWKPGRLE 203
S + R++ S + G
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWL 239
Query: 204 DKELRTNETNVTIINRLNFKDC---EIWFIRFSMDYWQKILAVGNQSGRTYVWDLDVQDP 260
+ ++ V +N+ + E + Y K + W
Sbjct: 240 AVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP---- 295
Query: 261 SSIKFQILSHPRCMSAVRQTTLSKNGNVLLC 291
+ + S+V +S + ++
Sbjct: 296 ---YGASIFQSKESSSVLSCDISVDDKYIVT 323
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 54.4 bits (129), Expect = 4e-09
Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 10/109 (9%)
Query: 31 VAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDI 90
+ + +P C + GH + + D +LS SKD + W+ K+
Sbjct: 283 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGN 341
Query: 91 CIAIFGGVEGHRDEVLS------ADFDLLGTKIMSCGMDHSLKLWDLTK 133
+ + +GHR+ V+S + + D ++W K
Sbjct: 342 PLLML---QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387
Score = 51.3 bits (121), Expect = 5e-08
Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 30/217 (13%)
Query: 45 FHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGG----VEG 100
+ + P D + + S D +R+W+ +T + G
Sbjct: 193 RTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG 252
Query: 101 HRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFDTQKE 160
H+D V S F G ++S +D S+KLW+L K +
Sbjct: 253 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV---------- 302
Query: 161 HFPQFSTRDIHRNYVDCVRWL--GDFVLSKSCENCIICWKPGRLEDKELRTNETNVTIIN 218
T H+++V V +++LS S + ++ W + ++ + +
Sbjct: 303 ------TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW--------DKKSGNPLLMLQG 348
Query: 219 RLNFKDCEIWFIRFSMDYWQKILAVGNQSGRTYVWDL 255
N S+ + A G+ + +W
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
Score = 37.9 bits (86), Expect = 0.001
Identities = 36/314 (11%), Positives = 88/314 (28%), Gaps = 51/314 (16%)
Query: 19 SMDLESGRPLLAVAGSRAVIRIFSPA----FHACVRHFYGHGHAINELKFHPQDFNLLLS 74
+D +S L + I +++PA + H + +KF L+
Sbjct: 22 DLDSQSVPDALKKQTNDYYI-LYNPALPREIDVELHKSLDHTSVVCCVKFSND--GEYLA 78
Query: 75 VSKDHTLRLWNIKTDICIAIFGG---------------VEGHRDEVLSADFDLLGTKIMS 119
+ T +++ + +A + S F G + +
Sbjct: 79 TGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 138
Query: 120 CGMDHSLKLWDLTKPEIKDACAESYTFNP----------------ARSTRPFDTQKEHFP 163
D +++WD+ +I R+ R +D +
Sbjct: 139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS 198
Query: 164 QFSTRDIHRNYVDCVRWLGDFVLSKSCENCIICWKPGRLEDKELRTNETNVTIINRLNFK 223
+ + V G ++ + S + + W + E +
Sbjct: 199 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS-----ETGFLVERLDSENESGTGH 253
Query: 224 DCEIWFIRFSMDYWQKILAVGNQSGRTYVWDLDVQDPSSIKF------QILSHPRCMSAV 277
++ + F+ D + + G+ +W+L + S +++ V
Sbjct: 254 KDSVYSVVFTRD--GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 311
Query: 278 RQTTLSKNGNVLLC 291
++N +L
Sbjct: 312 LSVATTQNDEYILS 325
Score = 34.8 bits (78), Expect = 0.010
Identities = 21/179 (11%), Positives = 48/179 (26%), Gaps = 12/179 (6%)
Query: 62 LKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAI-FGGVEGHRDEVLSADFDLLGTKIMSC 120
L Q L + L+N I + H V F G + +
Sbjct: 21 LDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLAT- 79
Query: 121 GMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFDTQKEHFPQFSTRDIHRNYVDCVRW 180
G + + +++ ++ + ++ N S+ Y+ V +
Sbjct: 80 GCNKTTQVYRVSDGSLVARLSDDSAANKDPENL----------NTSSSPSSDLYIRSVCF 129
Query: 181 LGDFVLSKSCENCIICWKPGRLEDKELRTNETNVTIINRLNFKDCEIWFIRFSMDYWQK 239
D + + K + + + I L++ + S D +
Sbjct: 130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 188
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 51.4 bits (121), Expect = 4e-08
Identities = 44/250 (17%), Positives = 96/250 (38%), Gaps = 48/250 (19%)
Query: 13 FYTCAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLL 72
A ++ + +++++ P C+ GH + + L+F +
Sbjct: 134 MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG---IHV 190
Query: 73 LSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLT 132
+S S D ++R+W+++T CI GH+ + ++S D ++K+WD+
Sbjct: 191 VSGSLDTSIRVWDVETGNCIHTL---TGHQSLTSGMELK--DNILVSGNADSTVKIWDI- 244
Query: 133 KPEIKDACAESYTFNPARSTRPFDTQKEHFPQFSTRDIHRNYVDCVRWLGDFVLSKSCEN 192
+ + H++ V C+++ +FV++ S +
Sbjct: 245 ------------------------KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG 280
Query: 193 CIICWKPGRLEDKELRTNETNVTIINRLNFK-DCEIWFIRFSMDYWQKILAVGNQSG--- 248
+ W +L+T E ++ + +W IR S + + AVG+++G
Sbjct: 281 TVKLW--------DLKTGEFIRNLVTLESGGSGGVVWRIRASNT--KLVCAVGSRNGTEE 330
Query: 249 -RTYVWDLDV 257
+ V D DV
Sbjct: 331 TKLLVLDFDV 340
Score = 46.7 bits (109), Expect = 1e-06
Identities = 20/130 (15%), Positives = 45/130 (34%), Gaps = 6/130 (4%)
Query: 8 LIEENFYTCAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQ 67
I + + +E +L + + ++I+ C++ G + +
Sbjct: 209 CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF 268
Query: 68 DFNLLLSVSKDHTLRLWNIKTDICIAIFGGVE--GHRDEVLSADFDLLGTKIMSCGMDHS 125
+ N +++ S D T++LW++KT I +E G V + +
Sbjct: 269 NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 328
Query: 126 ----LKLWDL 131
L + D
Sbjct: 329 EETKLLVLDF 338
Score = 46.7 bits (109), Expect = 1e-06
Identities = 33/229 (14%), Positives = 63/229 (27%), Gaps = 13/229 (5%)
Query: 48 CVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLS 107
+ GH + N ++S S D+TL++W+ T C+ GH V S
Sbjct: 8 SPKVLKGHDDHVITC-LQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTL---VGHTGGVWS 62
Query: 108 ADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFDTQKEHFPQFST 167
+ I+ G + +T +
Sbjct: 63 SQMR---DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119
Query: 168 RDIHRNYVDCVRWLGDFVLSKSCENCIICWKPGRLEDKELR-TNETNVTIINRLNFKDCE 226
R C+ L V + C D ++ + T ++ L
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 179
Query: 227 IWFIRFSMDYWQKILAVGNQSGRTYVWDLDVQDPSSIKFQILSHPRCMS 275
++ ++F + G+ VWD++ + S M
Sbjct: 180 VYSLQFD----GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 224
Score = 35.6 bits (80), Expect = 0.005
Identities = 35/253 (13%), Positives = 68/253 (26%), Gaps = 24/253 (9%)
Query: 28 LLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHP------QDFNLLLSVSKDHTL 81
+ ++++S C+R GH + + L + +
Sbjct: 29 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGE 88
Query: 82 RLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACA 141
+ + + R S D L I + H L ++
Sbjct: 89 CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR 148
Query: 142 ESYTFNPARSTRPFDTQKEHFPQFSTRDIHRNYVDCVRWLGDFVLSKSCENCIICWKPGR 201
+ + +D E T H N V +++ G V+S S + I W
Sbjct: 149 RVVSGAYDFMVKVWDP--ETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVET 206
Query: 202 LEDKELRTNETNVTIINRLNFKDCEIWFIRFSMDYWQKILAVGNQSGRTYVWDLDVQDPS 261
+ T + ++ + + KD IL GN +WD+
Sbjct: 207 --GNCIHTLTGHQSLTSGMELKD--------------NILVSGNADSTVKIWDIKTGQCL 250
Query: 262 SIKFQILSHPRCM 274
H +
Sbjct: 251 QTLQGPNKHQSAV 263
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 51.1 bits (120), Expect = 4e-08
Identities = 22/192 (11%), Positives = 41/192 (21%), Gaps = 4/192 (2%)
Query: 47 ACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVL 106
+ + YGH AI L D L S + + W+I T I +F + H +
Sbjct: 3 SIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFP--DVHATMIT 59
Query: 107 SADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFDTQKEHFPQFS 166
+ + D LK+ + + A + + +
Sbjct: 60 GIKTT-SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 118
Query: 167 TRDIHRNYVDCVRWLGDFVLSKSCENCIICWKPGRLEDKELRTNETNVTIINRLNFKDCE 226
+ I + + S
Sbjct: 119 YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH 178
Query: 227 IWFIRFSMDYWQ 238
I
Sbjct: 179 PAEITSVAFSNN 190
Score = 43.8 bits (101), Expect = 1e-05
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 1/95 (1%)
Query: 38 IRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGG 97
+ F + + A D L + S D+++ +WN+ I
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264
Query: 98 VEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLT 132
H +++ L T I+S G D ++K W++
Sbjct: 265 -GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298
Score = 40.4 bits (92), Expect = 1e-04
Identities = 28/262 (10%), Positives = 66/262 (25%), Gaps = 4/262 (1%)
Query: 18 WSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFY-GHGHAINELKFHPQDFNLLLSVS 76
++ + L A + I + + R F H I +K + L +VS
Sbjct: 16 TALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD--LFTVS 73
Query: 77 KDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMS-CGMDHSLKLWDLTKPE 135
D L++ + + L G ++ C ++
Sbjct: 74 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV 133
Query: 136 IKDACAESYTFNPARSTRPFDTQKEHFPQFSTRDIHRNYVDCVRWLGDFVLSKSCENCII 195
+ + + Q + + V + + N
Sbjct: 134 PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF 193
Query: 196 CWKPGRLEDKELRTNETNVTIINRLNFKDCEIWFIRFSMDYWQKILAVGNQSGRTYVWDL 255
+ + N + + ++ S LA G+ VW++
Sbjct: 194 LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 253
Query: 256 DVQDPSSIKFQILSHPRCMSAV 277
+ I + +++V
Sbjct: 254 NKPSDHPIIIKGAHAMSSVNSV 275
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 50.6 bits (119), Expect = 7e-08
Identities = 21/140 (15%), Positives = 46/140 (32%), Gaps = 2/140 (1%)
Query: 58 AINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKI 117
I+ ++ D + +H + ++ + + + ++ H +V D+ +I
Sbjct: 9 PISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHE-LKEHNGQVTGVDWAPDSNRI 66
Query: 118 MSCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFDTQKEHFPQFSTRDIHRNYVDC 177
++CG D + +W L K AR R +K+ +R I Y +
Sbjct: 67 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ 126
Query: 178 VRWLGDFVLSKSCENCIICW 197
K +
Sbjct: 127 ENDWWVCKHIKKPIRSTVLS 146
Score = 43.3 bits (100), Expect = 2e-05
Identities = 21/226 (9%), Positives = 56/226 (24%), Gaps = 14/226 (6%)
Query: 14 YTCAWSMDLESGRPLLAVAGSRAVIRIFSPA--FHACVRHFYGHGHAINELKFHPQDFNL 71
AW+ D R +A+ + + I+ + V H + + + P D N
Sbjct: 11 SCHAWNKD----RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNR 65
Query: 72 LLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDL 131
+++ D +W +K + + K + +
Sbjct: 66 IVTCGTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124
Query: 132 TKPEIKDACAESYTFNPARSTRPFDTQKEHFPQFSTRDIHRNYVDCVRWLGDFVLSKSCE 191
+ + + + + S + R ++
Sbjct: 125 EQ------ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER 178
Query: 192 NCIICWKPGRLEDKELRTNETNVTIINRLNFKDCEIWFIRFSMDYW 237
W + + + ++ ++ + F S D
Sbjct: 179 PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST 224
Score = 31.0 bits (68), Expect = 0.18
Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 15/114 (13%)
Query: 29 LAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKT 88
L AG +F+ A F G + ++ + + K
Sbjct: 257 LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQR--------GLTARERFQNLDKKA 308
Query: 89 DICIAIFGGVE---GHRDEV----LSADFDLLGTKIMSCGMDHSLKLWDLTKPE 135
+ G H++ V + + ++ + GMD + +WD+ E
Sbjct: 309 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
Score = 26.0 bits (55), Expect = 6.0
Identities = 17/186 (9%), Positives = 40/186 (21%), Gaps = 40/186 (21%)
Query: 18 WSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSK 77
+ + +A + + + V + + F + + L++
Sbjct: 205 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITE--SSLVAAGH 262
Query: 78 DHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIK 137
D L+ + FGG D + L + +D
Sbjct: 263 DCFPVLFTYDSAAGKLSFGG---RLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGA- 318
Query: 138 DACAESYTFNPARSTRPFDTQKEHFPQFSTRDIHRNYVDCVRWLGD------FVLSKSCE 191
+H+N V + L + +
Sbjct: 319 ----------------------------GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD 350
Query: 192 NCIICW 197
+ W
Sbjct: 351 GGMSIW 356
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 49.5 bits (116), Expect = 2e-07
Identities = 30/258 (11%), Positives = 65/258 (25%), Gaps = 19/258 (7%)
Query: 48 CVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLS 107
V+ I+++K P +LLL S D +L ++ ++ +L
Sbjct: 3 IVQIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 108 ADFDLLGTKIMSCG----------------MDHSLKLWDLTKPEIKDACAESYTFNPARS 151
+F + G + +
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121
Query: 152 TRPFDTQKEHFPQFSTRDIHRNYVDCVRWLGDFVLSKSCENCIICWKPGRLEDKELRTNE 211
++ + N + F + + I+ +++ L E
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE 181
Query: 212 TNVTIINRLNFKDCEIWFIRFSMDYWQKILAVGNQSGRTYVWDLDVQDPSSIKFQILSHP 271
+ I K + Q+ A + GR V D Q + +
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKE--QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239
Query: 272 RCMSAVRQTTLSKNGNVL 289
++ T L+ N +
Sbjct: 240 CHRLNLKDTNLAYPVNSI 257
Score = 40.2 bits (92), Expect = 2e-04
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 5/99 (5%)
Query: 39 RIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGV 98
+ F+ H + +N ++F P L + D + WN++T I F
Sbjct: 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAK- 291
Query: 99 EGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIK 137
+ D V+ + D + K I+
Sbjct: 292 -FNEDSVVKIACS--DNILCLATSDDTFKTNAAIDQTIE 327
Score = 29.0 bits (63), Expect = 0.68
Identities = 14/107 (13%), Positives = 28/107 (26%), Gaps = 12/107 (11%)
Query: 39 RIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDI-------- 90
R+ G + I ++ P++ S D + +
Sbjct: 176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235
Query: 91 ----CIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTK 133
C + V S +F + + G D + W+L
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282
Score = 27.9 bits (60), Expect = 1.4
Identities = 19/303 (6%), Positives = 61/303 (20%), Gaps = 39/303 (12%)
Query: 18 WSMDLESGRPLLAVAGSRAVIRIFSPAFHAC---VRHFYGHGHAINELKFHPQDFNLLLS 74
+ + + LL + + ++ A + + H + F +
Sbjct: 15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYV 74
Query: 75 VSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKP 134
+ + ++ E + + S +
Sbjct: 75 GTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD 134
Query: 135 EIKDACAESYTFNPARSTRPFDTQKEHFPQFSTRDIHRNYVD------------------ 176
+ + ++ + +
Sbjct: 135 GVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY 194
Query: 177 ------CVRWLGDFVLSKSCENCIICW---KPGRLEDKELRTNETNVTIINRLNFKDCEI 227
+ + S + + G + R + + +
Sbjct: 195 QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPV 254
Query: 228 WFIRFSMDYWQKILAVGNQSGRTYVWDLDVQDPSSIKFQILSHPRCMSAVRQTTLSKNGN 287
I FS + L G W+L + + + + ++ + N
Sbjct: 255 NSIEFSPRHK--FLYTAGSDGIISCWNLQ-------TRKKIKNFAKFNEDSVVKIACSDN 305
Query: 288 VLL 290
+L
Sbjct: 306 ILC 308
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 49.1 bits (115), Expect = 2e-07
Identities = 11/86 (12%), Positives = 23/86 (26%), Gaps = 2/86 (2%)
Query: 46 HACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEV 105
D + S S D T+++WN+ T D+
Sbjct: 227 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQ 286
Query: 106 LSADFDLLGTKIMSCGMDHSLKLWDL 131
L + ++S + + +
Sbjct: 287 LGIIWT--KQALVSISANGFINFVNP 310
Score = 38.7 bits (88), Expect = 4e-04
Identities = 17/238 (7%), Positives = 43/238 (18%), Gaps = 14/238 (5%)
Query: 31 VAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDI 90
+ + + H H K P S +R+W+
Sbjct: 33 QYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTT 91
Query: 91 CIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFNPAR 150
I + + V +D +I + G +
Sbjct: 92 HI-LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN 150
Query: 151 STRPFDTQKEHFPQFSTRDIHRNYVDCVRWLGDFVLSKSCENCIICWKPGRLED------ 204
S ++ S + + + + + P
Sbjct: 151 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 210
Query: 205 -----KELRTNETNVTIINRLNFKDCEI-WFIRFSMDYWQKILAVGNQSGRTYVWDLD 256
+ + +A + +W++
Sbjct: 211 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 268
Score = 33.3 bits (74), Expect = 0.030
Identities = 9/75 (12%), Positives = 23/75 (30%)
Query: 12 NFYTCAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNL 71
+ + +A A + I+I++ A + ++
Sbjct: 236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 295
Query: 72 LLSVSKDHTLRLWNI 86
L+S+S + + N
Sbjct: 296 LVSISANGFINFVNP 310
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 47.2 bits (110), Expect = 9e-07
Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
Query: 38 IRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGG 97
IR++ AC+R GH + D ++S + D +++W++ + G
Sbjct: 200 IRLWDIECGACLRVLEGHEELVR---CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG 256
Query: 98 ------VEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
+ H V FD +I+S D ++ +WD
Sbjct: 257 TLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293
Score = 44.8 bits (104), Expect = 5e-06
Identities = 29/240 (12%), Positives = 65/240 (27%), Gaps = 9/240 (3%)
Query: 48 CVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLS 107
+ + L++ Q ++S +D+T+++W+ T C I GH VL
Sbjct: 7 RIHCRSETSKGVYCLQYDDQ---KIVSGLRDNTIKIWDKNTLECKRIL---TGHTGSVLC 60
Query: 108 ADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFDTQKEHFPQFST 167
+D +++ G S + S
Sbjct: 61 LQYD---ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSI 117
Query: 168 RDIHRNYVDCVRWLGDFVLSKSCENCIICWKPGRLEDKELRTNETNVTIINRLNFKDCEI 227
+ V ++ N + + RT + T
Sbjct: 118 AVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGH 177
Query: 228 WFIRFSMDYWQKILAVGNQSGRTYVWDLDVQDPSSIKFQILSHPRCMSAVRQTTLSKNGN 287
+ Y +++ G+ +WD++ + RC+ + +S +
Sbjct: 178 KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYD 237
Score = 39.1 bits (89), Expect = 4e-04
Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 26/181 (14%)
Query: 38 IRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGG 97
I ++ A + + D ++S S D T+++WN T +
Sbjct: 117 IAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL-- 174
Query: 98 VEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFNPA-------- 149
GH+ + + ++S D++++LWD+
Sbjct: 175 -NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRI 231
Query: 150 ------RSTRPFDTQKEHFPQFSTRDI-------HRNYVDCVRWLGDFVLSKSCENCIIC 196
+ +D P+ + H V +++ ++S S ++ I+
Sbjct: 232 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILI 291
Query: 197 W 197
W
Sbjct: 292 W 292
Score = 26.7 bits (57), Expect = 3.5
Identities = 35/244 (14%), Positives = 67/244 (27%), Gaps = 39/244 (15%)
Query: 28 LLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIK 87
+ I+I+ C R GH ++ L++ + S S + +
Sbjct: 27 KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGE 86
Query: 88 TDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFN 147
+ H +++C D S+ +WD+ P
Sbjct: 87 MLNTLIHHCEAVLHLRFN--------NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR 138
Query: 148 PARSTRPFDTQKEHFP---------------QFSTRDIHRNYVDCVRWLGDFVLSKSCEN 192
A + FD + T + H+ + C+++ V+S S +N
Sbjct: 139 AAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDN 198
Query: 193 CIICWKPGRLEDKELRTNETNVTIINRLNFKDCEIWFIRFSMDYWQKILAVGNQSGRTYV 252
I W + + + K + G G+ V
Sbjct: 199 TIRLWDIEC----------------GACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 242
Query: 253 WDLD 256
WDL
Sbjct: 243 WDLV 246
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 47.2 bits (110), Expect = 1e-06
Identities = 27/240 (11%), Positives = 58/240 (24%), Gaps = 21/240 (8%)
Query: 54 GHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGV---EGHRDEVLSADF 110
H I + + +S S D L++W+ K H+ + D
Sbjct: 12 AHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 111 -------DLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFDTQKEHFP 163
+ + L + +T+ + + +
Sbjct: 69 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128
Query: 164 QFSTRDIHRNYVDCVRWLGDFVLSKSCENCIICWKPGRLEDKELRTNETNVTIINRLNFK 223
S + + + G + K L T + + F
Sbjct: 129 -ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 187
Query: 224 DCEIWFIRFSMDYWQKILAVGNQSGRTYVWDLDVQDPSSIKFQILSHPRCMSAVRQTTLS 283
+ S ++A G +G + +L P S +++R S
Sbjct: 188 TS----VDISER---GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240
Score = 44.8 bits (104), Expect = 6e-06
Identities = 25/197 (12%), Positives = 55/197 (27%), Gaps = 22/197 (11%)
Query: 99 EGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFDTQ 158
+ H ++ S + +SC D LK+WD + ++ +SY+
Sbjct: 11 KAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYS------------- 55
Query: 159 KEHFPQFSTRDIHRNYVDCVRWLGD---FVLSKSCENCIICWKPGRLEDKELRTNETNVT 215
+ H + + + V + S ++ ++ R ++ + E
Sbjct: 56 ---HFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDL 112
Query: 216 IINRLNFKDCEIWFIRFSMDY-WQKILAVGNQSGRTYVWDLDVQDPSSIKFQILSHPRCM 274
+ + + S D L + G TY+W S + P
Sbjct: 113 LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE 172
Query: 275 SAVRQTTLSKNGNVLLC 291
+
Sbjct: 173 LQGTVESPMTPSQFATS 189
Score = 40.2 bits (92), Expect = 2e-04
Identities = 25/247 (10%), Positives = 56/247 (22%), Gaps = 15/247 (6%)
Query: 55 HGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLG 114
H + ++ + L+ + S L + I + + ++L +D
Sbjct: 65 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKV---IFEKLDLLDSDMKKHS 121
Query: 115 TKIMSCGMDHSLKLWDL-----TKPEIKDACAESYTFNPARSTRPFDTQKEHFPQFSTRD 169
+ G + L K + T + E +
Sbjct: 122 FWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM 181
Query: 170 IHRNYVDCVRWLGDFVLSKSCENCII-----CWKPGRLEDKELRTNETNVTIINRLNFKD 224
+ V +++ N + + + N I + F
Sbjct: 182 TPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241
Query: 225 CEIWFIRFSMDYWQKILAVGNQSGRTYVWDLDVQDPSSIKFQILSHPRCMSAVRQTTLSK 284
+ + + L V SS S V + +
Sbjct: 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA--HSSWVMSLSFND 299
Query: 285 NGNVLLC 291
+G L
Sbjct: 300 SGETLCS 306
Score = 34.1 bits (76), Expect = 0.015
Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 8/81 (9%)
Query: 48 CVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEV-- 105
+ H + L F+ L S D LR W++KT I H D++
Sbjct: 281 ASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKERITTL---NMHCDDIEI 336
Query: 106 --LSADFDLLGTKIMSCGMDH 124
D G + G+
Sbjct: 337 EEDILAVDEHGDSLAEPGVFD 357
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 46.1 bits (107), Expect = 2e-06
Identities = 13/87 (14%), Positives = 27/87 (31%)
Query: 45 FHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDE 104
D +V D T+R+W++ T C+ + +
Sbjct: 239 EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 298
Query: 105 VLSADFDLLGTKIMSCGMDHSLKLWDL 131
+I+S +D +L ++L
Sbjct: 299 QQVGVVATGNGRIISLSLDGTLNFYEL 325
Score = 39.1 bits (89), Expect = 3e-04
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 2/77 (2%)
Query: 12 NFYTCAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAI--NELKFHPQDF 69
A G+ A IR++ CV+ + + ++
Sbjct: 249 EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN 308
Query: 70 NLLLSVSKDHTLRLWNI 86
++S+S D TL + +
Sbjct: 309 GRIISLSLDGTLNFYEL 325
Score = 30.3 bits (66), Expect = 0.25
Identities = 17/91 (18%), Positives = 39/91 (42%)
Query: 45 FHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDE 104
F A R + G + +++F P +++V D + ++ K+ + +
Sbjct: 194 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG 253
Query: 105 VLSADFDLLGTKIMSCGMDHSLKLWDLTKPE 135
+ A L K + G D ++++WD+T +
Sbjct: 254 GIFALSWLDSQKFATVGADATIRVWDVTTSK 284
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 44.9 bits (104), Expect = 5e-06
Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 8/117 (6%)
Query: 19 SMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKD 78
SM E+G L R+ P + + + +
Sbjct: 239 SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE-FAAYYQGAPEK 297
Query: 79 HTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPE 135
L +++KT V ++ + +M D + + L KPE
Sbjct: 298 GVLLKYDVKT-------RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE 347
Score = 31.0 bits (68), Expect = 0.15
Identities = 6/74 (8%), Positives = 19/74 (25%), Gaps = 5/74 (6%)
Query: 15 TCAWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLS 74
A + V+ + R + + +L+ D ++
Sbjct: 277 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVK----TRKVTEVKNNLTDLRLSA-DRKTVMV 331
Query: 75 VSKDHTLRLWNIKT 88
D + + ++
Sbjct: 332 RKDDGKIYTFPLEK 345
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 42.6 bits (98), Expect = 3e-05
Identities = 42/247 (17%), Positives = 81/247 (32%), Gaps = 8/247 (3%)
Query: 28 LLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIK 87
+ +IR++ + GH + LK+ +L+S S D T+R+W+IK
Sbjct: 25 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG--GILVSGSTDRTVRVWDIK 82
Query: 88 TDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFN 147
C +F G + ++ + + D++L +W L K E + +
Sbjct: 83 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT-GSRDNTLHVWKLPKESSVPDHGEEHDY- 140
Query: 148 PARSTRPFDTQKEHFPQFSTRDIHRNYVDCVRWLGDFVLSKSCENCIICWKPGRLEDKEL 207
F T +E+ H V V G+ V+S S +N +I W +++ +
Sbjct: 141 ----PLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYI 196
Query: 208 RTNETNVTIINRLNFKDCEIWFIRFSMDYWQKILAVGNQSGRTYVWDLDVQDPSSIKFQI 267
+ T+ + + L G V +
Sbjct: 197 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFL 256
Query: 268 LSHPRCM 274
+S
Sbjct: 257 VSAAADG 263
Score = 34.5 bits (77), Expect = 0.011
Identities = 13/98 (13%), Positives = 27/98 (27%), Gaps = 7/98 (7%)
Query: 52 FYGH-GHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADF 110
GH I L+F N +++ + D +R+++ + GH V + +
Sbjct: 8 LRGHMTSVITCLQFED---NYVITGADDKMIRVYDSINKKFLLQL---SGHDGGVWALKY 61
Query: 111 DLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFNP 148
G + + T
Sbjct: 62 AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRC 99
Score = 30.6 bits (67), Expect = 0.18
Identities = 15/221 (6%), Positives = 52/221 (23%)
Query: 18 WSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSK 77
W++ G L++ + R V + ++ +++ S+
Sbjct: 57 WALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 116
Query: 78 DHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIK 137
D+TL +W + + + G + + + + ++ M + +
Sbjct: 117 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS 176
Query: 138 DACAESYTFNPARSTRPFDTQKEHFPQFSTRDIHRNYVDCVRWLGDFVLSKSCENCIICW 197
+ + + H + + C+ D +
Sbjct: 177 GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM 236
Query: 198 KPGRLEDKELRTNETNVTIINRLNFKDCEIWFIRFSMDYWQ 238
+ + + + +
Sbjct: 237 YTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKF 277
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 42.3 bits (97), Expect = 3e-05
Identities = 26/230 (11%), Positives = 57/230 (24%), Gaps = 17/230 (7%)
Query: 48 CVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLS 107
++ GH I L +P L+S S D + W+ + + H + ++S
Sbjct: 5 VLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS--------MHQDHSNLIVS 51
Query: 108 ADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFDTQKEHFPQFST 167
D D S + + D F+
Sbjct: 52 LDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTG 111
Query: 168 RDIHRN----YVDCVRWLGDFVLSKSCENCIICWKPGRLEDKELRTNETNVTIINRLNFK 223
I V ++V E I + + ++
Sbjct: 112 DIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS 171
Query: 224 DCEIWFIRFSMDYWQKILAVGNQSGRTYVWDLDVQDPSSIKFQILSHPRC 273
E + + + + ++ +T W ++I ++
Sbjct: 172 PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGAN 221
Score = 38.8 bits (88), Expect = 4e-04
Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 45 FHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDE 104
F + A + +L+ + S D + ++++K + I + H+D
Sbjct: 203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA--LNAHKDG 260
Query: 105 VLSADFDLLGTKIMSCGMDHSLKLWD 130
V + ++ + ++S G D +K W+
Sbjct: 261 VNNLLWET-PSTLVSSGADACIKRWN 285
Score = 36.1 bits (81), Expect = 0.003
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 12 NFYTCAWSMDLESGRPLLAVAGSRAVIRIFSPA-FHACVRHFYGHGHAINELKFHPQDFN 70
+ + E L+A I I+S ++ H +N L + +
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP--S 270
Query: 71 LLLSVSKDHTLRLWNI 86
L+S D ++ WN+
Sbjct: 271 TLVSSGADACIKRWNV 286
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 36.3 bits (82), Expect = 0.003
Identities = 21/259 (8%), Positives = 55/259 (21%), Gaps = 8/259 (3%)
Query: 22 LESGRPLLAVAGSRAVIRIFSPAFHACVRHF-YGHGHAINELKFHPQDFNLLLSVSKDHT 80
L++G + V + + A + P + + +
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 81 LRLWNI---KTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIK 137
+ ++ K + + S G ++ +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK--- 120
Query: 138 DACAESYTFNPARSTRPFDTQKEHFPQFSTRDIHRNYVDCVRWLGDFVLSKSCENCIICW 197
E ++ +P T + R + + K+ + +
Sbjct: 121 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALP 180
Query: 198 KPGRLEDKELRTNETNVTIINRLNFKDCEIWFIRFSMDYWQKILAVGNQSGRTYVWDLDV 257
+ + ++ I D Q A + DL
Sbjct: 181 LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ-DPATADLLYGYLSVDLKT 239
Query: 258 QDPSSIKFQILSHPRCMSA 276
+ +F L+
Sbjct: 240 GKTHTQEFADLTELYFTGL 258
Score = 30.5 bits (67), Expect = 0.23
Identities = 26/237 (10%), Positives = 52/237 (21%), Gaps = 20/237 (8%)
Query: 25 GRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINEL--KFHPQDFNLLLSVSKDHTLR 82
G+ + A + + F + F L+ + D +L
Sbjct: 100 GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY 159
Query: 83 LWNIKTDICIAIFGGVEG---HRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDA 139
+ G R+ T KD
Sbjct: 160 VAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD 219
Query: 140 CAESYTFNPARSTRPFDTQKEHFPQFSTRDIHRNYVDCVRWLGDFVLSKSCENCIICWKP 199
+ T + D + D+ Y +R D N + +
Sbjct: 220 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDL 279
Query: 200 GRLEDKELRTNETNVTIINRLNFKDCEIWFIRFSMDYWQKILAVGNQSGRTYVWDLD 256
+ K ++ + T + + F L +G V++ D
Sbjct: 280 K--QRKLIKAANLDHTY-----------YCVAFDKK--GDKLYLGGTFNDLAVFNPD 321
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 35.2 bits (79), Expect = 0.006
Identities = 20/241 (8%), Positives = 53/241 (21%), Gaps = 3/241 (1%)
Query: 49 VRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSA 108
+ + + P L + V + + + I D F +
Sbjct: 29 LTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHI 88
Query: 109 DFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFNPARSTRPFDTQKEHFPQFSTR 168
D G + + + + + + + +
Sbjct: 89 STDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK 148
Query: 169 DIHRNYVDCVRWLGDFVLSKSCENCIICWKPGRLEDKELRTNETNVTIINRLNFKDCEIW 228
+ + P + V +N
Sbjct: 149 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD 208
Query: 229 FIRFSMDYWQKILAVGNQSGRTYVWDLDVQDPSSIKFQILSHPRCMSAVRQTTLSKNGNV 288
+ N S + D+ + + + + R S + ++S++G+V
Sbjct: 209 PHGNIECVQTLDMMPENFSDTRWAADIHI---TPDGRHLYACDRTASLITVFSVSEDGSV 265
Query: 289 L 289
L
Sbjct: 266 L 266
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 34.9 bits (79), Expect = 0.010
Identities = 7/60 (11%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 71 LLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
+++ + L + + + + +SA G ++ G D + + D
Sbjct: 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSAS----GRYLLVIGRDARIDMID 89
Score = 31.8 bits (71), Expect = 0.083
Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 23/129 (17%)
Query: 48 CVRHFYGHGHAINELKFHPQ------DFNLLLSVSKDHTLRLWNIKTD------ICIAIF 95
V G G +K HP+ D ++ ++++K + IA +
Sbjct: 295 KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEW 354
Query: 96 GGVEGHRDEVLSADFDLLGTKI-MSCGMDHS----LKLWDLT----KPEIKDACAESYT- 145
+ V+ +++ G ++ S + L + D K +KD + T
Sbjct: 355 ADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTG 414
Query: 146 -FNPARSTR 153
FN +
Sbjct: 415 KFNVYNTQH 423
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 34.8 bits (79), Expect = 0.011
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 71 LLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWD 130
+++ + L + T + LSA G + G D + + D
Sbjct: 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSAS----GRYLFVIGRDGKVNMID 89
Query: 131 L 131
L
Sbjct: 90 L 90
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 34.4 bits (77), Expect = 0.015
Identities = 16/121 (13%), Positives = 34/121 (28%), Gaps = 6/121 (4%)
Query: 18 WSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSK 77
+DL SG A + + + A++ + + +
Sbjct: 219 HQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 278
Query: 78 DHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIM--SCGMDHSLKLWDLTKPE 135
+ + + KT +A F +S D ++ D +L + D E
Sbjct: 279 SRFVVVLDAKTGERLAKFEMGHEIDSINVSQD----EKPLLYALSTGDKTLYIHDAESGE 334
Query: 136 I 136
Sbjct: 335 E 335
Score = 34.0 bits (76), Expect = 0.016
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 3/91 (3%)
Query: 18 WSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLL-SVS 76
L R + + + + F GH I+ + + LL +
Sbjct: 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF-EMGHEIDSINVSQDEKPLLYALST 320
Query: 77 KDHTLRLWNIKTDICIAIFGGVEGHRDEVLS 107
D TL + + ++ + + GH +V++
Sbjct: 321 GDKTLYIHDAESGEELRSVNQL-GHGPQVIT 350
Score = 29.0 bits (63), Expect = 0.76
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 4/55 (7%)
Query: 14 YTCAWSMDLESGRPLLAVAGSRA-VIRIFSPAFHACVRHFYGHGHAINELKFHPQ 67
+ S D +PLL + + I +R GH +
Sbjct: 303 DSINVSQD---EKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 34.0 bits (76), Expect = 0.017
Identities = 10/85 (11%), Positives = 23/85 (27%), Gaps = 2/85 (2%)
Query: 70 NLLLSVSKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIM-SCGMDHSLKL 128
+ +L+ ++ L + + + + + + G + SL
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60
Query: 129 WDLTKPEIKDACAESYTFNPARSTR 153
DL E S +S
Sbjct: 61 IDLVTGETLGRIDLSTPEERVKSLF 85
Score = 31.3 bits (69), Expect = 0.14
Identities = 26/277 (9%), Positives = 56/277 (20%), Gaps = 44/277 (15%)
Query: 17 AWSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGH-----GHAINELKFHPQDFNL 71
+ GR A + + ++ P D
Sbjct: 40 MVAPG---GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKT 95
Query: 72 LLSVSKDHTLRLWNIKT--------DICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMD 123
L L L + + D ++ + G+K+ G D
Sbjct: 96 LAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD 155
Query: 124 HSLKLWD---LTKPEIKDACAESYTFNPARSTRPFDTQKEHF------------------ 162
+ + L + + + P +
Sbjct: 156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT 215
Query: 163 ---PQFSTRDIHRNYVDCVRWLGDFVLSKSCENCIICWKPGRLEDKELRTNETNVTIINR 219
T D+ + V S + + + I R
Sbjct: 216 AYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKR 275
Query: 220 LNFKDCEIWFIRFSMDYWQKILAVGNQSGRTYVWDLD 256
+ + + S D + +G G +D +
Sbjct: 276 VPLPH-SYYSVNVSTD--GSTVWLGGALGDLAAYDAE 309
Score = 29.0 bits (63), Expect = 0.71
Identities = 26/256 (10%), Positives = 60/256 (23%), Gaps = 14/256 (5%)
Query: 26 RPLLAVAGSRAVIRIFSPAFHACVRHF--YGHGHAINELKFHPQDFNLLLSVSKDHTLRL 83
R + + + A + G P +V+K +L
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60
Query: 84 WNIKTDICIAIFGGVEGHR--DEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACA 141
++ T + + A G + L+L + A
Sbjct: 61 IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVAL- 119
Query: 142 ESYTFNPARSTRPFDTQKEHFPQFSTRDIHRNYVDCVRWLGDFVLSKSCENCIICWKPGR 201
Y + F+ ++ RD + Y D + ++ KP
Sbjct: 120 --YDAETLSRRKAFEAPRQITMLAWARDGSKLYG----LGRDLHVMDPEAGTLVEDKPI- 172
Query: 202 LEDKELRTNETNVTIINRLNFKDCEIWFIRFSMDYWQKILAVGNQSGRTYVWDLDVQDPS 261
++ N + + I + RT + +D++
Sbjct: 173 --QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230
Query: 262 SIKFQILSHPRCMSAV 277
++ +
Sbjct: 231 MAMREVRIMDVFYFST 246
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 33.8 bits (76), Expect = 0.020
Identities = 18/253 (7%), Positives = 55/253 (21%), Gaps = 31/253 (12%)
Query: 18 WSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSK 77
W G L G+ + + + + F +
Sbjct: 49 WVSCAGCGVTLGHSLGAFLSLAVAGHSGS--------------DFALASTSFARSAKGKR 94
Query: 78 DHTLRLWNIKTDICIAIFGGVEGHRDEVL----SADFDLLGTKIMSCGM-DHSLKLWDLT 132
+ +++ T + IA + R V ++ + +
Sbjct: 95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVP 154
Query: 133 KPEI--KDACAESYTFNPARSTRPFDTQKEHFPQFSTRDIHRNYVDCVRWLGDFVL---- 186
A + +P + + S V
Sbjct: 155 GASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSS 214
Query: 187 ---SKSCENCIICWKPGRLEDKELRTNETNVTIINRLNFKDCEIWFIRFSMDYWQKILAV 243
+ ++ + ++ T+ ++ + F +Q ++A
Sbjct: 215 QAAQANYPGMLVWAVASSILQGDIPAAG--ATMKAAIDGNESGRKADNFRSAGFQ-MVAK 271
Query: 244 GNQSGRTYVWDLD 256
+ + ++
Sbjct: 272 LKNTDGIMILTVE 284
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 32.3 bits (72), Expect = 0.054
Identities = 10/122 (8%), Positives = 28/122 (22%), Gaps = 17/122 (13%)
Query: 18 WSMDLESGRPLLAVAGSRAVIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSK 77
+ D ++ + L + G +P F+ ++
Sbjct: 1 YVYDADAKKLLGQIDGGFGPGFAIAPD---------RK-----ASVVATTYFSRGSHGTR 46
Query: 78 DHTLRLWNIKTDICIAIFGGVEGHRDEVLSADF---DLLGTKIMSCGMDHSLKLWDLTKP 134
+ + + T H V S G ++ + + + +
Sbjct: 47 TDVVEIIDNTTLDHAGEIVIPAKHAQHVPSPYNTAFSADGKRLYVANITPAASVTVIDAV 106
Query: 135 EI 136
Sbjct: 107 SK 108
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 32.2 bits (71), Expect = 0.066
Identities = 9/105 (8%), Positives = 28/105 (26%), Gaps = 3/105 (2%)
Query: 76 SKDHTLRLWNIKTDICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPE 135
S+ + + ++ ++ A V+S D + ++ + + + D
Sbjct: 9 SESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKV---YVANAHSNDVSIIDTATNN 65
Query: 136 IKDACAESYTFNPARSTRPFDTQKEHFPQFSTRDIHRNYVDCVRW 180
+ + + ST + + V
Sbjct: 66 VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG 110
Score = 29.8 bits (65), Expect = 0.39
Identities = 6/47 (12%), Positives = 17/47 (36%)
Query: 49 VRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTDICIAIF 95
+ G + P + +++S +T+ + + T+ A
Sbjct: 236 ITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282
Score = 26.4 bits (56), Expect = 3.9
Identities = 18/247 (7%), Positives = 54/247 (21%), Gaps = 13/247 (5%)
Query: 31 VAGSRA-VIRIFSPAFHACVRHFYGHGHAINELKFHPQDFNLLLSVSKDHTLRLWNIKTD 89
+A S + I + + + P + ++ + + + + + T+
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATN 64
Query: 90 ICIAIFGGVEGHRDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDACAESYTFNPA 149
IA + +S D + M+ + T +
Sbjct: 65 NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS 124
Query: 150 RSTRPFDTQKEHFPQFSTRDIHRNY----------VDCVRWLGDFVLSKSCENCIICWKP 199
+ S + + D +
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184
Query: 200 GRLEDKELRTNETNVTIINRLNFKDCEIWFIRFSMDYWQKILAVGNQSGRTYVWDLDV-Q 258
+ + + ++D + +++ + + V
Sbjct: 185 IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP 244
Query: 259 DPSSIKF 265
DP+ I
Sbjct: 245 DPAGIAV 251
>d1nofa2 c.1.8.3 (A:44-320) Glycosyl hydrolase family 5 xylanase,
catalytic domain {Erwinia chrysanthemi [TaxId: 556]}
Length = 277
Score = 27.3 bits (60), Expect = 1.9
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 102 RDEVLSADFDLLGTKIMSCGMDHSLKLWDLTKPEIKDA 139
+ + +G IM +D W++ P + A
Sbjct: 21 INTAYGSGVGQIGLSIMRVRIDPDSSKWNIQLPSARQA 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.138 0.451
Gapped
Lambda K H
0.267 0.0427 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,146,097
Number of extensions: 53293
Number of successful extensions: 299
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 93
Length of query: 291
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 206
Effective length of database: 1,240,546
Effective search space: 255552476
Effective search space used: 255552476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)