BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10349
(517 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 158 bits (399), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 154/551 (27%), Positives = 244/551 (44%), Gaps = 71/551 (12%)
Query: 1 GCVVTNRLTENPDWKVLLLEAG-DEENAL-TDIPETAHYL-QFTKFNWNFTTEFQPGACR 57
G VV RLTE+PD VL+LEAG +EN L + P A L + F+WN+TT Q
Sbjct: 14 GNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQ----A 69
Query: 58 GLNNERCPWPAGRAVGGASVINNNIYTRGNPNDFDRWLE-AGNVGWGYKDVLPYFKKSED 116
G N +P GR +GG+S ++ + RG+ DFDR+ G+ GW + ++ + +K+E
Sbjct: 70 GYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEM 129
Query: 117 IDVPELKRS-------EYHGVGGYLNVDYSPYKSKLMDAFLESAPEVGLNLTDYNSPDGN 169
+ P + HG G +++ + + L D L + E + +PD
Sbjct: 130 VVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQSEEF--FFNPDMG 187
Query: 170 ----VGFSRIQGTIQFGRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFG-- 223
+G S ++ G+R S+S A+LRP RPN V+ A+V K++ T +
Sbjct: 188 TGHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFR 247
Query: 224 -VEFMKNN--KKRVVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNI-PVLADLQVG 279
VE+ + V AKKEVVLSAG+ +P LL LSGIG L I ++ + VG
Sbjct: 248 CVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVG 307
Query: 280 ENLQEHPAFASLAFTVNQKVGLVSDRIFSNLAKET------IKAFTN--QGWTTTLGCEG 331
NL +H + AF VN S++ F N+ +++ + +TN G T L
Sbjct: 308 RNLSDHLLLPA-AFFVN------SNQTFDNIFRDSSEFNVDLDQWTNTRTGPLTALIANH 360
Query: 332 LGYVRTKYNN-----YPPGVPDIEYIFVPASLAIEEEKGGSLLRKTMGIPDRTFKELFRD 386
L ++R N+ +P + P S E + PD F
Sbjct: 361 LAWLRLPSNSSIFQTFP------DPAAGPNSAHWETIFSNQWFHPAIPRPD---TGSFMS 411
Query: 387 VKNKDAWSIWPMLMYPESRGYVRLKSADPMVYPAVQSNFFQDPLDLLRIVEGIKMVIELS 446
V N L+ P +RG ++L +++P P + + D+ +++ +K +
Sbjct: 412 VTNA--------LISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFL 463
Query: 447 KTNAFQKYKSKLSTRILPACKKHKYGSDDYW-GCCVRQLTMQMHHQCGTCKMGPDGDRTA 505
A+ + I P + + +DD +R + H GT M P G
Sbjct: 464 SGQAWADFV------IRPFDPRLRDPTDDAAIESYIRDNANTIFHPVGTASMSPRGASWG 517
Query: 506 VVDPRLRVHGI 516
VVDP L+V G+
Sbjct: 518 VVDPDLKVKGV 528
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 148/526 (28%), Positives = 234/526 (44%), Gaps = 78/526 (14%)
Query: 1 GCVVTNRLTENPDWKVLLLEAGDEENALTDI--PETAHYLQFTKFNWNFTTEFQPGACRG 58
G ++ RL+E+PD +VLL+EAG EE DI P LQ ++W++ TE Q G
Sbjct: 29 GSLLAARLSEDPDSRVLLIEAG-EEPTDPDIWNPAAWPALQGRSYDWDYRTEAQAGTAGR 87
Query: 59 LNNERCPWPAGRAVGGASVINNNIYTRGNPNDFDRWLEA-GNVGWGYKDVLPYFKKSEDI 117
++ W GR +GG+S ++ Y RG+P+DF W++A G+ WG+ ++LP F+ ED
Sbjct: 88 AHH----WARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDH 143
Query: 118 DVPELKRSEYHG-VGGYLNVDYSPYKSKLMDAFLESAPEVGLNLTDYNSPDGNVGFSRIQ 176
+ G + +L D S L AF+E+ +GL + ++ +G +
Sbjct: 144 PLGGDGIHGKGGPLPIHLPADEV---SPLARAFIEAGASLGLPRLEGHNSGEMIGVTPNS 200
Query: 177 GTIQFGRRFSASQAFLRPIVE-RPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVV 235
I+ GRR +A+ A+L V R N ++ +RV ++ ++ N +V +E + V
Sbjct: 201 LNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGN--QVRSLEVVGRQGSAEV 258
Query: 236 YAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADL-QVGENLQEHPAFASLAFT 294
+A ++VL AGA SP LL+ SGIGP + L+ + L D+ +G NLQ+H A +
Sbjct: 259 FA-DQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYA 317
Query: 295 VNQKVGLVSDRIFSNLAKETIKAFTNQGW-TTTLGCEGLGYVRTKYNNYPPGVPDIEYIF 353
+ V + ++A +FT G +GC GV I
Sbjct: 318 ARKPVPPSRLQHSESMAYMRADSFTAAGQPEIVVGC---------------GVAPIVSES 362
Query: 354 VPASLAIEEEKGGSLLRKTMGIPDRTFKELFRDVKNKDAWSIWPMLMYPESRGYVRLKSA 413
PA A A+S+ + +P SRG VR+
Sbjct: 363 FPAPAA------------------------------GSAYSLLFGITHPTSRGSVRISG- 391
Query: 414 DPMVYPAVQSNFFQDP--LDLLRIVEGIKMVIELSKTNAFQKYKSKLSTR-ILPACKKHK 470
P + DP L R E + +E S+T + + R +LP
Sbjct: 392 -----PELGDRLIIDPAYLQTGRDRERFRRALEASRTIGHRDELAGWRERELLPGTPNSA 446
Query: 471 YGSDDYWGCCVRQLTMQMHHQCGTCKMGPDGDRTAVVDPRLRVHGI 516
DD+ + + + HH CGTC+MG D D AVVD LR+ +
Sbjct: 447 AEMDDF----IARSVITHHHPCGTCRMGKDPD--AVVDANLRLKAL 486
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 155/553 (28%), Positives = 244/553 (44%), Gaps = 70/553 (12%)
Query: 1 GCVVTNRLTENPDWKVLLLEAG---DEENALTDIPETAHYLQFTKFNWNFTTEFQPGACR 57
G V RL ENP+ VL++EAG E+ P +A L+ +K++W + T R
Sbjct: 18 GNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWAYKTTM----VR 73
Query: 58 GLNNERCPWP--AGRAVGGASVINNNIYTRGNPNDFDRWLEAGNVGWGYKDVLPYFKKSE 115
+ ER P G+ +GG+S +N + G+ FD+W E G W + ++PY +KS
Sbjct: 74 RDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSA 133
Query: 116 DI-DVPELKRSEYHGVGG---------YLNVDYSPYKSKLMDAFLESAPEVGLNLTDYNS 165
D P L E +GG L + +P++ L A+ +G L + N
Sbjct: 134 TYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAW----KSMGQPLIE-NI 188
Query: 166 PDGNV-GFSRIQGTIQFGRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGV 224
DG + G + TI G+R S S F++ +PN ++ + +++I+ + GV
Sbjct: 189 YDGEMDGLTHCCDTIYRGQR-SGSFLFVK---NKPNITIVPEVHSKRLIINEADRTCKGV 244
Query: 225 EFMKNNKKRV-VYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLAD-LQVGENL 282
+ + +A +EV+LS G F +P LL+LSGIGP +L + I + D VG+NL
Sbjct: 245 TVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNL 304
Query: 283 QEHPAFASLAFTVNQKVGLVSDRIF--SNLAKETIKAFTNQGWTTTLGC---EGLGYVRT 337
+HP + F + K G D + ++ + + N+ + +G E +G+ R
Sbjct: 305 MDHPG---VPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGLLELVGFPRI 361
Query: 338 -KYNNYPPGVPDIEYIFVPASLAIEEEKGGSLLRKTMGIPD----------RTFKELFRD 386
KY D EY A+ GG +G P F+ F
Sbjct: 362 DKYLEK-----DAEYRKAKAA------NGGKDPFSPLGQPHFELDFVCMFGTAFQWHFPT 410
Query: 387 VKNKDAWSIWPMLMYPESR-GYVRLKSADPMVYPAVQSNFFQDPLDLLRIVEGIKMVIEL 445
K D ++ L+ P S G V L SADP P + NFF + LD++ + EGI+ +L
Sbjct: 411 PKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMREGIRFSYDL 470
Query: 446 S-KTNAFQKYKSKLSTRILPACKKHKYGSDDYWGCCVRQLTMQMHHQCGTCKMGPDGDRT 504
K F+ +P SD V H GT ++ + D+
Sbjct: 471 LFKGEGFKDLVESEYPWEMP------LDSDKEMHRAVLDRCQTAFHPTGTARLSKNIDQ- 523
Query: 505 AVVDPRLRVHGIK 517
VVDP+L+VHGIK
Sbjct: 524 GVVDPKLKVHGIK 536
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 134/532 (25%), Positives = 233/532 (43%), Gaps = 92/532 (17%)
Query: 7 RLTENPDWKVLLLEAGDEENALTDIPETAHYLQF--TKFNWNFTTEFQPGACRGLNNERC 64
RL+E+P V L+EAG ++ + ++ + +++ + ++W++ E Q + + R
Sbjct: 31 RLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEPQENGNSFMRHARA 90
Query: 65 PWPAGRAVGGASVINNNIYTRGNPNDFDRW-LEAGNVGWGYKDVLPYFKK---SEDI--D 118
+ +GG S N+ I D D W + G GW + P +K+ +ED D
Sbjct: 91 -----KVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGPD 145
Query: 119 VPELKRSEYHGVGGYLNVDYSPYKSKLMDAFLESAPEVGLNLTDYNSPDGNVGFSRIQGT 178
P +HG G +++ P K A L++ + G+ +N+ G + + G
Sbjct: 146 AP------HHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNT-----GTTVVNGA 194
Query: 179 IQF-------GRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKN-- 229
F G R S+S +++ PIVE+ NF ++ R +++ D + +R GV+ + +
Sbjct: 195 NFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDAD-RRCTGVDIVDSAF 253
Query: 230 NKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADLQ-VGENLQEHPAF 288
+ A+ EVVLS GA +P LL+LSGIGP L + I VL D VGE+LQ+HP
Sbjct: 254 GHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHP-- 311
Query: 289 ASLAFTVNQKVGLVSDRIFSNLAKETIKAFTNQGWTTTLGCEGLGYVRTKYNNYPPGVPD 348
+ + AK+ + A + Q W
Sbjct: 312 ---------------EGVVQFEAKQPMVAESTQWWEIG---------------------- 334
Query: 349 IEYIFVPASLAIEEEKGGSLLRKTMGIP--DRTFKELFRDVKNKDAWSIWPMLMYPESRG 406
IF P ++ L+ +P T + + +N +S+ P + + SRG
Sbjct: 335 ---IFTPTEDGLDRP---DLMMHYGSVPFDMNTLRHGYPTTEN--GFSLTPNVTHARSRG 386
Query: 407 YVRLKSADPMVYPAVQSNFFQDP--LDLLRIVEGIKMVIELSKTNAFQKYKSKLSTRILP 464
VRL+S D P V +F DP D+ +V GI+ E++ A ++ + + P
Sbjct: 387 TVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGR---ELSP 443
Query: 465 ACKKHKYGSDDYWGCCVRQLTMQMHHQCGTCKMGPDGDRTAVVDPRLRVHGI 516
+ +D+ +R+ ++H GT +MG D + +DP LRV G+
Sbjct: 444 GVEAQ---TDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGV 492
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 153/548 (27%), Positives = 227/548 (41%), Gaps = 67/548 (12%)
Query: 1 GCVVTNRLTENPDWKVLLLEAGDEENALTDIPETAH-YLQFTKFNWNFTTEFQPGACRGL 59
G RLTENP+ VL++E+G E+ I E + Y + + E A
Sbjct: 31 GLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELAT--- 87
Query: 60 NNERCPWPAGRAVGGASVINNNIYTRGNPNDFDRWLEA-GNVGWGYKDVLPYFKKSEDID 118
NN+ +G +GG++++N +TR + D W GN GW + +V Y ++E
Sbjct: 88 NNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERAR 147
Query: 119 VPELKR--------SEYHGVGGYLNV-------DYSPYKSKLMDAFLESAPEVGLNLTDY 163
P K+ + HGV G ++ DYSP LM A + D+
Sbjct: 148 APNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTK---KDF 204
Query: 164 NSPDGNVGFSRIQGTIQFGR-RFSASQAFLRPIVERPNFHVMKKARVLKVLIDPN--TKR 220
D + G S T+ + R A++ +L P +RPN V+ V KVL+ N T R
Sbjct: 205 GCGDPH-GVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPR 263
Query: 221 VFGVEF-MKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADLQVG 279
GVEF VYAK EV+L+AG+ SP +L SGIG + LE I + DL VG
Sbjct: 264 AVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVG 323
Query: 280 ENLQEHPAFASLAFTVNQKVGLVSDRIFSNLAKETIKAFTNQGWTTTLGCEGLG------ 333
NLQ+ Q V RI S A + A W T E G
Sbjct: 324 LNLQD------------QTTATVRSRITSAGAGQGQAA-----WFATFN-ETFGDYSEKA 365
Query: 334 --YVRTKYNNYPPGVPDIEYIFVPASLAIEEEKGGSLLRKTMGIPDRTFKELFRDVKNKD 391
+ TK + +L I+ E R + + + ELF D
Sbjct: 366 HELLNTKLEQWAEEAVARGGFHNTTALLIQYEN----YRDWIVNHNVAYSELFLDTAGVA 421
Query: 392 AWSIWPMLMYPESRGYVRLKSADPMVYP-AVQSNFFQDPLDLLRIVEGIKMVIELSKTNA 450
++ +W +L P +RGYV + DP ++ A +F + LDLL ++ +S + A
Sbjct: 422 SFDVWDLL--PFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGA 479
Query: 451 FQKYKSKLSTRILPACKKHKYGSD-DYWGCCVRQLTMQMHHQCGTCKMGPDGDRTAVVDP 509
Q Y + +P Y +D W + +H GTC M P + VVD
Sbjct: 480 MQTY---FAGETIPG-DNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMPK-EMGGVVDN 534
Query: 510 RLRVHGIK 517
RV+G++
Sbjct: 535 AARVYGVQ 542
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 134/532 (25%), Positives = 232/532 (43%), Gaps = 92/532 (17%)
Query: 7 RLTENPDWKVLLLEAGDEENALTDIPETAHYLQF--TKFNWNFTTEFQPGACRGLNNERC 64
RL+E+P V L+EAG ++ + ++ + +++ + ++W++ E Q + + R
Sbjct: 31 RLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEPQENGNSFMRHARA 90
Query: 65 PWPAGRAVGGASVINNNIYTRGNPNDFDRW-LEAGNVGWGYKDVLPYFKK---SEDI--D 118
+ +GG S N+ I D D W + G GW + P +K+ +ED D
Sbjct: 91 -----KVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGPD 145
Query: 119 VPELKRSEYHGVGGYLNVDYSPYKSKLMDAFLESAPEVGLNLTDYNSPDGNVGFSRIQGT 178
P +HG G +++ P K A L++ + G+ +N+ G + + G
Sbjct: 146 AP------HHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNT-----GTTVVNGA 194
Query: 179 IQF-------GRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKN-- 229
F G R S+S +++ PIVE+ NF ++ R +++ D + +R GV+ + +
Sbjct: 195 NFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDAD-RRCTGVDIVDSAF 253
Query: 230 NKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADLQ-VGENLQEHPAF 288
+ A+ EVVLS GA +P LL+LSGIGP L + I VL D VGE+LQ+HP
Sbjct: 254 GHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHP-- 311
Query: 289 ASLAFTVNQKVGLVSDRIFSNLAKETIKAFTNQGWTTTLGCEGLGYVRTKYNNYPPGVPD 348
+ + AK+ + A + Q W
Sbjct: 312 ---------------EGVVQFEAKQPMVAESTQWWEIG---------------------- 334
Query: 349 IEYIFVPASLAIEEEKGGSLLRKTMGIP--DRTFKELFRDVKNKDAWSIWPMLMYPESRG 406
IF P ++ L+ +P T + + +N +S+ P + + SRG
Sbjct: 335 ---IFTPTEDGLDRP---DLMMHYGSVPFDMNTLRHGYPTTEN--GFSLTPNVTHARSRG 386
Query: 407 YVRLKSADPMVYPAVQSNFFQDP--LDLLRIVEGIKMVIELSKTNAFQKYKSKLSTRILP 464
VRL+S D P V +F DP D+ +V GI+ E++ A ++ + + P
Sbjct: 387 TVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGR---ELSP 443
Query: 465 ACKKHKYGSDDYWGCCVRQLTMQMHHQCGTCKMGPDGDRTAVVDPRLRVHGI 516
+ +D+ +R+ +H GT +MG D + +DP LRV G+
Sbjct: 444 GVEAQ---TDEELQDYIRKTHNTAYHPVGTVRMGAVEDEMSPLDPELRVKGV 492
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 134/532 (25%), Positives = 232/532 (43%), Gaps = 92/532 (17%)
Query: 7 RLTENPDWKVLLLEAGDEENALTDIPETAHYLQF--TKFNWNFTTEFQPGACRGLNNERC 64
RL+E+P V L+EAG ++ + ++ + +++ + ++W++ E Q + + R
Sbjct: 31 RLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEPQENGNSFMRHARA 90
Query: 65 PWPAGRAVGGASVINNNIYTRGNPNDFDRW-LEAGNVGWGYKDVLPYFKK---SEDI--D 118
+ +GG S N I D D W + G GW + P +K+ +ED D
Sbjct: 91 -----KVMGGCSSHNACIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGPD 145
Query: 119 VPELKRSEYHGVGGYLNVDYSPYKSKLMDAFLESAPEVGLNLTDYNSPDGNVGFSRIQGT 178
P +HG G +++ P K A L++ + G+ +N+ G + + G
Sbjct: 146 AP------HHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNT-----GTTVVNGA 194
Query: 179 IQF-------GRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKN-- 229
F G R S+S +++ PIVE+ NF ++ R +++ D + +R GV+ + +
Sbjct: 195 NFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDAD-RRCTGVDIVDSAF 253
Query: 230 NKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADLQ-VGENLQEHPAF 288
+ A+ EVVLS GA +P LL+LSGIGP L + I VL D VGE+LQ+HP
Sbjct: 254 GHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHP-- 311
Query: 289 ASLAFTVNQKVGLVSDRIFSNLAKETIKAFTNQGWTTTLGCEGLGYVRTKYNNYPPGVPD 348
+ + AK+ + A + Q W
Sbjct: 312 ---------------EGVVQFEAKQPMVAESTQWWEIG---------------------- 334
Query: 349 IEYIFVPASLAIEEEKGGSLLRKTMGIP--DRTFKELFRDVKNKDAWSIWPMLMYPESRG 406
IF P ++ L+ +P T + + +N +S+ P + + SRG
Sbjct: 335 ---IFTPTEDGLDRP---DLMMHYGSVPFDMNTLRHGYPTTEN--GFSLTPNVTHARSRG 386
Query: 407 YVRLKSADPMVYPAVQSNFFQDP--LDLLRIVEGIKMVIELSKTNAFQKYKSKLSTRILP 464
VRL+S D P V +F DP D+ +V GI+ E++ A ++ + + P
Sbjct: 387 TVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGR---ELSP 443
Query: 465 ACKKHKYGSDDYWGCCVRQLTMQMHHQCGTCKMGPDGDRTAVVDPRLRVHGI 516
+ +D+ +R+ ++H GT +MG D + +DP LRV G+
Sbjct: 444 GVEAQ---TDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGV 492
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 134 bits (338), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 141/540 (26%), Positives = 226/540 (41%), Gaps = 52/540 (9%)
Query: 1 GCVVTNRLTENPDWKVLLLEAG---DEENALTDIPETAHYLQFTKFNWNFTTEFQPGACR 57
G V +LTENP KVL++E G + A+ + P + T + N+ T
Sbjct: 36 GLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLT------VP 89
Query: 58 GLNNERCPWPAGRAVGGASVINNNIYTRGNPNDFDRWLEA-GNVGWGYKDVLPYFKKSED 116
+NN AG+ +GG+++IN + +TR + D W + G GW + ++ Y KK+E
Sbjct: 90 LINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEA 149
Query: 117 IDVPELKR--------SEYHGVGGYLNV---DYSPYKSKLMDAFLESAPEVGLNLTDYNS 165
P + + HG G + D S +M A + + +G+ +
Sbjct: 150 ARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFL 209
Query: 166 PDGNVGFSRIQGTIQFGR-RFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNTK--RVF 222
G S I + + R A++A+L P +R N ++ V KVL +
Sbjct: 210 CGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAV 269
Query: 223 GVEFMKNNKKRV-VYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADLQVGEN 281
GV F N V+AK EV+L+AG+ SP +L SGIG + L+Q N+ L DL VG N
Sbjct: 270 GVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGIN 329
Query: 282 LQEHPAFASLAFTVNQKVGLVSDRIFSNLAKETIKAFTNQGWTTTLGC---EGLGYVRTK 338
+Q+ Q VS R S A + F +T T G + + TK
Sbjct: 330 MQD------------QTTTTVSSRASSAGAGQGQAVFF-ANFTETFGDYAPQARDLLNTK 376
Query: 339 YNNYPPGVPDIEYIFVPASLAIEEEKGGSLLRKTMGIPDRTFKELFRDVKNKDAWSIWPM 398
+ + +L ++ E R + D F ELF D + K + +W +
Sbjct: 377 LDQWAEETVARGGFHNVTALKVQYEN----YRNWLLDEDVAFAELFMDTEGKINFDLWDL 432
Query: 399 LMYPESRGYVRLKSADPMVYP-AVQSNFFQDPLDLLRIVEGIKMVIELSKTNAFQKYKSK 457
+ P +RG V + S+DP ++ A FF + DLL K+ +L+ A ++Y
Sbjct: 433 I--PFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEY--- 487
Query: 458 LSTRILPACKKHKYGSDDYWGCCVRQLTMQMHHQCGTCKMGPDGDRTAVVDPRLRVHGIK 517
+ LP + + W V Q H +C M + VVD +V+G +
Sbjct: 488 FAGETLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSSCSM-MSRELGGVVDATAKVYGTQ 546
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 134/534 (25%), Positives = 206/534 (38%), Gaps = 107/534 (20%)
Query: 1 GCVVTNRLTENPDWKVLLLEAGDEENALTDIPETAHYLQFTKFNWNFTTEFQPGACRGLN 60
GC + L+E +KVL+LE G A ++ + ++ +N + Q R ++
Sbjct: 38 GCPLAATLSEK--YKVLVLERGTLPTAYPNLLTSDGFI----YNLQQEDDGQTPVERFVS 91
Query: 61 NERCPWPAGRAVGGASVINNNIYTRGNPNDFDRWLEAGNVGWGYKDVLPYFKKSEDIDVP 120
+ GR +GG S+IN +Y R N F A + W V + ED V
Sbjct: 92 GDGIDDVRGRVLGGTSMINAGVYARANTKIF----SASGIEWDMDLVNQTYDWVEDTIV- 146
Query: 121 ELKRSEYHGVGGYLNVDYSPYKSKLMDAFLESA--PEVGLNLTDYNSPDGNVGFSRIQGT 178
D ++S AFLE+ P+ G +L D G +R+ G+
Sbjct: 147 -------------YKPDKQAWQSLTKTAFLEAGVLPDNGFSL------DHEAG-TRLTGS 186
Query: 179 I--QFGRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRV--FGVEFMKNN---K 231
G R ++ + + + N V A V K++ N+ V GV + +N
Sbjct: 187 TFDNNGTRHASDELLNKG--DPNNLRVAVHASVEKIIFSSNSSGVTAIGVIYKDSNGTPH 244
Query: 232 KRVVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIP-VLADLQVGENLQEHPAFAS 290
+ V + EV++SAG SP LLLLSG+GP L NIP VL+ VG+ L ++P
Sbjct: 245 QAFVRGEGEVIVSAGPIGSPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNP---- 300
Query: 291 LAFTVNQKVGLVSDRIFSN-LAKETIKAFTNQGWTTTLGCEGLGYVRTKYNNYPPGVPDI 349
R F N L I+ T T LG + + +++ P +P
Sbjct: 301 --------------RNFINILPPNPIEPST----VTVLGITS-NFYQCSFSSLPFSIP-- 339
Query: 350 EYIFVPASLAIEEEKGGSLLRKTMGIPDRTFKELFRDVKNKDAWSIWPMLMYPESRGYVR 409
+ F P T +P+ TF V P S G +
Sbjct: 340 PFAFFP--------------NPTYPLPNSTFAHFVNKVPG------------PLSYGSIT 373
Query: 410 LKS-ADPMVYPAVQSNFFQDPLDLLRIVEGIKMVIELSKTNAFQKYKSK-----LSTRIL 463
L S +D V P V+ N++ + DL V G+K + EL ++A + YK + IL
Sbjct: 374 LNSDSDVRVAPNVKFNYYSNSTDLAHCVSGMKKIGELLSSDALKPYKVEDLPGIDGFDIL 433
Query: 464 PACKKHKYGSDDYWGCCVRQLTMQMHHQCGTCKMGPDGDRTAVVDPRLRVHGIK 517
D + R+ H G C +G V+D RV GI
Sbjct: 434 GIPLPENQTDDAAFETFCREAVASYWHYHGGCLVG------EVLDGDFRVTGIN 481
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 137/542 (25%), Positives = 206/542 (38%), Gaps = 124/542 (22%)
Query: 1 GCVVTNRLTENPDWKVLLLEAGDEENALTDIPETAHYLQFTKFNWNFTTEFQPG------ 54
GC + L+E +KVL+LE G A ++ L F +N E
Sbjct: 38 GCPLAATLSEK--YKVLVLERGSLPTAYPNV------LTADGFVYNLQQEDDGKTPVERF 89
Query: 55 -ACRGLNNERCPWPAGRAVGGASVINNNIYTRGNPNDFDRWLEAGNVGWGYKDVLPYFKK 113
+ G++N R GR +GG S+IN +Y R N + + A V W V ++
Sbjct: 90 VSEDGIDNVR-----GRVLGGTSIINAGVYARANTSIY----SASGVDWDMDLVNQTYEW 140
Query: 114 SEDIDVPELKRSEYHGVGGYLNVDYSPYKSKLMDAFLESA--PEVGLNLTDYNSPDGNVG 171
ED V + + V AFLE+ P G +L D G
Sbjct: 141 VEDTIVYKPNSQSWQSV--------------TKTAFLEAGVHPNHGFSL------DHEEG 180
Query: 172 FSRIQGTI--QFGRRFSASQAFLRPIVERPNFHVMKKARVLKVLID--PNTKRVFGVEFM 227
+RI G+ G R +A + + N V A V K++ P GV +
Sbjct: 181 -TRITGSTFDNKGTRHAADELLNKG--NSNNLRVGVHASVEKIIFSNAPGLTAT-GVIYR 236
Query: 228 KNN---KKRVVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIP-VLADLQVGENLQ 283
+N + V +K EV++SAG +P LLLLSG+GP L NIP VL+ VG+ L
Sbjct: 237 DSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLH 296
Query: 284 EHPAFASLAFTVNQKVGLVSDRIFSNLAKETIKAFTNQGWTTTLGCEGLGYVRTKYNNYP 343
++P R F N+ T T LG + + +++ P
Sbjct: 297 DNP------------------RNFINILPPNPIEPT---IVTVLGISN-DFYQCSFSSLP 334
Query: 344 PGVPDIEYIFVPASLAIEEEKGGSLLRKTMGIPDRTFKELFRDVKNKDAWSIWPMLMYPE 403
P + F P+S + +P+ TF V P
Sbjct: 335 FTTP--PFGFFPSS--------------SYPLPNSTFAHFASKVAG------------PL 366
Query: 404 SRGYVRLKSADPM-VYPAVQSNFFQDPLDLLRIVEGIKMVIELSKTNAFQKYKSK----- 457
S G + LKS+ + V P V+ N++ + DL V G+K + EL T+A + YK +
Sbjct: 367 SYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGV 426
Query: 458 --LSTRILPACKKHKYGSDDYWGCCVRQLTMQMHHQCGTCKMGPDGDRTAVVDPRLRVHG 515
+ +P K D + R+ H G C +G V+D RV G
Sbjct: 427 EGFNILGIPLPKDQT--DDAAFETFCRESVASYWHYHGGCLVG------KVLDGDFRVTG 478
Query: 516 IK 517
I
Sbjct: 479 IN 480
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 137/542 (25%), Positives = 206/542 (38%), Gaps = 124/542 (22%)
Query: 1 GCVVTNRLTENPDWKVLLLEAGDEENALTDIPETAHYLQFTKFNWNFTTEFQPG------ 54
GC + L+E +KVL+LE G A ++ L F +N E
Sbjct: 38 GCPLAATLSEK--YKVLVLERGSLPTAYPNV------LTADGFVYNLQQEDDGKTPVERF 89
Query: 55 -ACRGLNNERCPWPAGRAVGGASVINNNIYTRGNPNDFDRWLEAGNVGWGYKDVLPYFKK 113
+ G++N R GR +GG S+IN +Y R N + + A V W V ++
Sbjct: 90 VSEDGIDNVR-----GRVLGGTSIINAGVYARANTSIY----SASGVDWDMDLVNQTYEW 140
Query: 114 SEDIDVPELKRSEYHGVGGYLNVDYSPYKSKLMDAFLESA--PEVGLNLTDYNSPDGNVG 171
ED V + + V AFLE+ P G +L D G
Sbjct: 141 VEDTIVYKPNSQSWQSV--------------TKTAFLEAGVHPNHGFSL------DHEEG 180
Query: 172 FSRIQGTI--QFGRRFSASQAFLRPIVERPNFHVMKKARVLKVLID--PNTKRVFGVEFM 227
+RI G+ G R +A + + N V A V K++ P GV +
Sbjct: 181 -TRITGSTFDNKGTRHAADELLNKG--NSNNLRVGVHASVEKIIFSNAPGLTAT-GVIYR 236
Query: 228 KNN---KKRVVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIP-VLADLQVGENLQ 283
+N + V +K EV++SAG +P LLLLSG+GP L NIP VL+ VG+ L
Sbjct: 237 DSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLH 296
Query: 284 EHPAFASLAFTVNQKVGLVSDRIFSNLAKETIKAFTNQGWTTTLGCEGLGYVRTKYNNYP 343
++P R F N+ T T LG + + +++ P
Sbjct: 297 DNP------------------RNFINILPPNPIEPT---IVTVLGISN-DFYQCSFSSLP 334
Query: 344 PGVPDIEYIFVPASLAIEEEKGGSLLRKTMGIPDRTFKELFRDVKNKDAWSIWPMLMYPE 403
P + F P+S + +P+ TF V P
Sbjct: 335 FTTP--PFGFFPSS--------------SYPLPNSTFAHFASKVAG------------PL 366
Query: 404 SRGYVRLKSADPM-VYPAVQSNFFQDPLDLLRIVEGIKMVIELSKTNAFQKYKSK----- 457
S G + LKS+ + V P V+ N++ + DL V G+K + EL T+A + YK +
Sbjct: 367 SYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGV 426
Query: 458 --LSTRILPACKKHKYGSDDYWGCCVRQLTMQMHHQCGTCKMGPDGDRTAVVDPRLRVHG 515
+ +P K D + R+ H G C +G V+D RV G
Sbjct: 427 EGFNILGIPLPKDQT--DDAAFETFCRESVASYWHYHGGCLVG------KVLDGDFRVTG 478
Query: 516 IK 517
I
Sbjct: 479 IN 480
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 135/324 (41%), Gaps = 56/324 (17%)
Query: 1 GCVVTNRLTENPDWKVLLLEAG---DEENALTDIPETAHYLQFTKFNWNFTTEFQPGACR 57
G + +RL+E KVLLLE G ++ T + A TKF+ PG
Sbjct: 19 GIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFD-------IPGLFE 70
Query: 58 GLNNERCP--WP------AGRAVGGASVINNNIYTRGNPNDFDRWLEAGNVGW--GYKDV 107
L + P W AG VGG + +N +Y N DF + +VGW + +
Sbjct: 71 SLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDF-----SSSVGWPSSWTNH 125
Query: 108 LPYFKKSEDIDVPELKRSEYHGVGG--YLNVDYSPYKSKLMDAFLESAPEVGLNLTDYNS 165
PY K L +++ G YL ++ S+L+ + + +N + N
Sbjct: 126 APYTSKLSS----RLPSTDHPSTDGQRYLEQSFN-VVSQLLKG--QGYNQATIN-DNPNY 177
Query: 166 PDGNVGFSRIQGTIQFGRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVE 225
D G+S G+R +L+ + RPNF V V+ N ++ GV+
Sbjct: 178 KDHVFGYSAFD--FLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVR--NGSQILGVQ 233
Query: 226 F----MKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLE--QFNIPVLA----- 274
+ N V K V+LSAGAF + +L SGIGP + ++ Q N A
Sbjct: 234 TNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQ 293
Query: 275 ----DLQVGENLQEHPAFASLAFT 294
+L VG N Q++P+ +L FT
Sbjct: 294 NQWINLPVGMNAQDNPSI-NLVFT 316
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 135/324 (41%), Gaps = 56/324 (17%)
Query: 1 GCVVTNRLTENPDWKVLLLEAG---DEENALTDIPETAHYLQFTKFNWNFTTEFQPGACR 57
G + +RL+E KVLLLE G ++ T + A TKF+ PG
Sbjct: 14 GIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFD-------IPGLFE 65
Query: 58 GLNNERCP--WP------AGRAVGGASVINNNIYTRGNPNDFDRWLEAGNVGW--GYKDV 107
L + P W AG VGG + +N +Y N DF + +VGW + +
Sbjct: 66 SLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDF-----SSSVGWPSSWTNH 120
Query: 108 LPYFKKSEDIDVPELKRSEYHGVGG--YLNVDYSPYKSKLMDAFLESAPEVGLNLTDYNS 165
PY K L +++ G YL ++ S+L+ + + +N + N
Sbjct: 121 APYTSKLSS----RLPSTDHPSTDGQRYLEQSFN-VVSQLLKG--QGYNQATIN-DNPNY 172
Query: 166 PDGNVGFSRIQGTIQFGRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVE 225
D G+S G+R +L+ + RPNF V V+ N ++ GV+
Sbjct: 173 KDHVFGYSAFD--FLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVR--NGSQILGVQ 228
Query: 226 F----MKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLE--QFNIPVLA----- 274
+ N V K V+LSAGAF + +L SGIGP + ++ Q N A
Sbjct: 229 TNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQ 288
Query: 275 ----DLQVGENLQEHPAFASLAFT 294
+L VG N Q++P+ +L FT
Sbjct: 289 NQWINLPVGMNAQDNPSI-NLVFT 311
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 78/193 (40%), Gaps = 31/193 (16%)
Query: 92 DRWLEAGNVGWGYKDVLPYFKKSEDIDVPELKRSEYHGVGGYLNVDYS---PYKSKLMDA 148
D+ + N+G GY D LP+ + +D ++ +YH ++++DYS K +L+
Sbjct: 106 DKKIVVVNLGCGY-DPLPF----QLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKT 160
Query: 149 FLESAPEVGLNLTDYNSPDGNVGFSRIQGTIQFGRRFSASQAFLRPIVERPNFHVMKKAR 208
E + +GL+ D NV F + + S+ F + E
Sbjct: 161 IPELSKIIGLSEDKDYVDDSNVDFLTTPKYLARPCDLNDSKMFSTLLNECQ--------- 211
Query: 209 VLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKE----VVLSAGAFFSPHLLLLSGIGPREQ 264
L DPN +VF E + Y K E ++ + + H ++L + P+
Sbjct: 212 ----LYDPNVVKVFVAEV------SLAYMKPERSDSIIEATSKMENSHFIILEQLIPKGP 261
Query: 265 LEQFNIPVLADLQ 277
E F+ +LA +
Sbjct: 262 FEPFSKQMLAHFK 274
>pdb|1TUO|A Chain A, Crystal Structure Of Putative Phosphomannomutase From
Thermus Thermophilus Hb8
Length = 464
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 21/153 (13%)
Query: 113 KSEDIDVPELKRSEYHGVGGYLNVDYSPYKSKLMDAFLESAPEVGLNLTDYNSPDGNVGF 172
K+ + VPE R+ G Y +D + + A L+ G + Y+ G G
Sbjct: 134 KAIEALVPEEARALE---GAYETLDLREAYFEALKAHLDLKALSGFSGVLYHDSMGGAGA 190
Query: 173 SRIQGTIQFGRRFSASQAFLRPIVERPN--FH------VMKKARVLKVLIDPNTKRVFGV 224
++G + R + +RPI E P+ FH + K V ++ P T F V
Sbjct: 191 GFLKGFL----RHVGLEIPVRPIREEPHPLFHGVNPEPIPKNLGVTLAVLGPETPPSFAV 246
Query: 225 EFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLS 257
+ RV VVL G FF+PH +L +
Sbjct: 247 A-TDGDADRV-----GVVLPGGVFFNPHQVLTT 273
>pdb|3BZC|A Chain A, Crystal Structure Of The Tex Protein From Pseudomonas
Aeruginosa, Crystal Form I
pdb|3BZK|A Chain A, Crystal Structure Of The Tex Protein From Pseudomonas
Aeruginosa, Crystal Form 2
Length = 785
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 29/144 (20%)
Query: 362 EEKGGSLLRKTMGIPDRTFKELFRDVKNKDAWSIWPMLMYP-----ESRGYVRLKSA--- 413
EE+ G++L ++ + EL RD+K D + L P ++G + L++
Sbjct: 71 EERRGAIL-ASIEEQGKLTPELARDIKLADTKTRLEDLYLPYKQKRRTKGQIALEAGLGA 129
Query: 414 -------DPMVYPAVQSNFFQDP----LDLLRIVEGIKMVIE---------LSKTNAFQK 453
DP + P ++ F D D+ ++EG K ++ L K F K
Sbjct: 130 LADALFDDPTLVPESEAARFVDAEKGFADVKAVLEGAKYILMERFAEDATLLDKLRVFMK 189
Query: 454 YKSKLSTRILPACKKHKYGSDDYW 477
++ L+ R++P ++ DY+
Sbjct: 190 NEATLTARVVPGKEQEGAKFSDYF 213
>pdb|2OCE|A Chain A, Crystal Structure Of Tex Family Protein Pa5201 From
Pseudomonas Aeruginosa
Length = 780
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 29/144 (20%)
Query: 362 EEKGGSLLRKTMGIPDRTFKELFRDVKNKDAWSIWPMLMYP-----ESRGYVRLKSA--- 413
EE+ G++L ++ + EL RD+K D + L P ++G + L++
Sbjct: 72 EERRGAIL-ASIEEQGKLTPELARDIKLADTKTRLEDLYLPYKQKRRTKGQIALEAGLGA 130
Query: 414 -------DPMVYPAVQSNFFQDP----LDLLRIVEGIKMVIE---------LSKTNAFQK 453
DP + P ++ F D D+ ++EG K ++ L K F K
Sbjct: 131 LADALFDDPTLVPESEAARFVDAEKGFADVKAVLEGAKYILMERFAEDATLLDKLRVFMK 190
Query: 454 YKSKLSTRILPACKKHKYGSDDYW 477
++ L+ R++P ++ DY+
Sbjct: 191 NEATLTARVVPGKEQEGAKFSDYF 214
>pdb|3OWO|A Chain A, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 With And Without Nad Cofactor
pdb|3OWO|B Chain B, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 With And Without Nad Cofactor
pdb|3OWO|C Chain C, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 With And Without Nad Cofactor
pdb|3OWO|D Chain D, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 With And Without Nad Cofactor
pdb|3OX4|A Chain A, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
pdb|3OX4|B Chain B, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
pdb|3OX4|C Chain C, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
pdb|3OX4|D Chain D, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
Length = 383
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 407 YVRLKSADPMVYPAVQSNFFQDPLDLLRIVEGIKMVIELSK-TNAFQKYKSKLSTRILPA 465
+V++ D V P V N DPL ++ + +G+ + T+AF+ Y S +T I A
Sbjct: 158 HVKMAIVDRHVTPMVSVN---DPLLMVGMPKGLTAATGMDALTHAFEAYSSTAATPITDA 214
Query: 466 C 466
C
Sbjct: 215 C 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,475,063
Number of Sequences: 62578
Number of extensions: 718820
Number of successful extensions: 1588
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1528
Number of HSP's gapped (non-prelim): 31
length of query: 517
length of database: 14,973,337
effective HSP length: 103
effective length of query: 414
effective length of database: 8,527,803
effective search space: 3530510442
effective search space used: 3530510442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)