Query psy10349
Match_columns 517
No_of_seqs 256 out of 1495
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 15:39:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 2E-105 4E-110 823.1 39.0 505 1-517 69-579 (623)
2 TIGR01810 betA choline dehydro 100.0 7.9E-82 1.7E-86 675.8 44.5 472 1-517 11-493 (532)
3 PRK02106 choline dehydrogenase 100.0 6.2E-81 1.3E-85 672.3 44.2 469 1-517 17-498 (560)
4 COG2303 BetA Choline dehydroge 100.0 1.8E-71 4E-76 591.0 31.9 470 1-517 19-500 (542)
5 PLN02785 Protein HOTHEAD 100.0 4.3E-67 9.2E-72 560.5 35.0 449 1-517 67-543 (587)
6 PF00732 GMC_oxred_N: GMC oxid 100.0 2.8E-56 6.1E-61 444.7 14.4 278 1-286 12-295 (296)
7 TIGR02462 pyranose_ox pyranose 100.0 5.4E-41 1.2E-45 352.5 24.6 373 67-517 112-506 (544)
8 PF05199 GMC_oxred_C: GMC oxid 99.9 4.4E-23 9.5E-28 183.0 9.9 114 402-517 1-115 (144)
9 PRK12837 3-ketosteroid-delta-1 98.4 3.1E-06 6.8E-11 90.8 13.3 64 190-255 178-242 (513)
10 PRK12835 3-ketosteroid-delta-1 98.3 4.7E-06 1E-10 90.7 13.5 63 192-255 219-282 (584)
11 PRK12844 3-ketosteroid-delta-1 98.3 2.6E-06 5.7E-11 92.2 9.7 54 196-251 218-271 (557)
12 PRK07121 hypothetical protein; 98.2 1.4E-05 2.9E-10 85.6 13.8 61 194-255 185-246 (492)
13 PRK12845 3-ketosteroid-delta-1 98.2 2.2E-05 4.8E-10 85.0 13.3 55 196-252 227-281 (564)
14 PF00890 FAD_binding_2: FAD bi 98.1 1E-05 2.2E-10 84.7 10.2 55 197-255 152-208 (417)
15 PRK08274 tricarballylate dehyd 98.1 2.4E-05 5.3E-10 83.1 11.7 63 196-261 141-204 (466)
16 TIGR01813 flavo_cyto_c flavocy 97.9 6.4E-05 1.4E-09 79.2 10.2 55 194-250 138-193 (439)
17 PF01266 DAO: FAD dependent ox 97.8 5.2E-05 1.1E-09 77.0 7.6 56 196-259 157-212 (358)
18 PRK06481 fumarate reductase fl 97.8 0.00011 2.5E-09 78.7 10.2 56 197-255 201-258 (506)
19 PRK06134 putative FAD-binding 97.7 0.00028 6E-09 77.0 12.5 57 196-254 227-283 (581)
20 PRK11101 glpA sn-glycerol-3-ph 97.7 0.00033 7.2E-09 75.8 12.7 59 197-259 160-220 (546)
21 PRK06175 L-aspartate oxidase; 97.6 0.00027 5.9E-09 74.2 10.4 57 191-250 134-190 (433)
22 PRK12843 putative FAD-binding 97.6 0.00041 9E-09 75.6 12.0 56 195-252 230-285 (578)
23 PRK12842 putative succinate de 97.5 0.001 2.2E-08 72.6 13.3 58 196-255 224-281 (574)
24 TIGR02485 CobZ_N-term precorri 97.5 0.0006 1.3E-08 71.7 11.1 57 196-255 133-189 (432)
25 PLN02815 L-aspartate oxidase 97.5 0.0003 6.4E-09 76.6 8.8 55 195-250 165-223 (594)
26 PRK12834 putative FAD-binding 97.5 0.00076 1.6E-08 73.2 11.7 55 198-255 164-234 (549)
27 PTZ00306 NADH-dependent fumara 97.5 0.00041 8.8E-09 81.5 9.8 53 198-251 559-622 (1167)
28 PRK06263 sdhA succinate dehydr 97.5 0.0011 2.3E-08 71.9 12.3 53 196-250 144-198 (543)
29 PRK07395 L-aspartate oxidase; 97.5 0.00061 1.3E-08 73.7 10.3 54 196-250 145-198 (553)
30 PRK08958 sdhA succinate dehydr 97.4 0.0011 2.4E-08 72.4 12.2 53 196-250 153-207 (588)
31 TIGR03377 glycerol3P_GlpA glyc 97.4 0.0014 3E-08 70.6 12.8 59 197-259 139-199 (516)
32 PRK06452 sdhA succinate dehydr 97.4 0.0014 3.1E-08 71.3 12.8 50 197-249 147-198 (566)
33 PRK05675 sdhA succinate dehydr 97.4 0.0016 3.6E-08 70.8 13.2 53 196-250 136-190 (570)
34 PRK09078 sdhA succinate dehydr 97.3 0.001 2.2E-08 72.8 9.3 53 196-250 159-213 (598)
35 PLN00128 Succinate dehydrogena 97.3 0.00095 2.1E-08 73.3 9.1 53 197-251 198-252 (635)
36 TIGR01816 sdhA_forward succina 97.3 0.0013 2.8E-08 71.5 10.0 54 194-250 127-182 (565)
37 TIGR01811 sdhA_Bsu succinate d 97.3 0.0027 5.8E-08 69.5 12.4 51 198-250 145-197 (603)
38 PTZ00139 Succinate dehydrogena 97.2 0.0027 5.9E-08 69.7 12.4 53 196-250 176-230 (617)
39 PRK07573 sdhA succinate dehydr 97.2 0.0031 6.7E-08 69.5 12.6 52 196-250 180-233 (640)
40 TIGR01812 sdhA_frdA_Gneg succi 97.2 0.002 4.3E-08 70.3 10.8 51 197-250 140-192 (566)
41 PRK06854 adenylylsulfate reduc 97.2 0.0039 8.6E-08 68.3 13.0 50 197-249 144-195 (608)
42 PRK05945 sdhA succinate dehydr 97.2 0.0037 7.9E-08 68.2 12.6 52 196-250 145-198 (575)
43 PRK09077 L-aspartate oxidase; 97.2 0.0047 1E-07 66.8 13.2 55 195-250 148-208 (536)
44 TIGR00551 nadB L-aspartate oxi 97.1 0.0018 3.9E-08 69.2 9.0 51 197-250 140-190 (488)
45 PRK07804 L-aspartate oxidase; 97.1 0.0034 7.4E-08 67.9 11.0 53 196-250 154-211 (541)
46 PRK08641 sdhA succinate dehydr 97.0 0.0083 1.8E-07 65.6 12.9 50 199-250 150-201 (589)
47 TIGR01176 fum_red_Fp fumarate 96.9 0.008 1.7E-07 65.6 12.3 52 196-250 143-196 (580)
48 PRK07843 3-ketosteroid-delta-1 96.9 0.002 4.3E-08 70.0 7.6 61 194-256 216-276 (557)
49 PRK07057 sdhA succinate dehydr 96.9 0.0075 1.6E-07 66.0 12.1 52 197-250 159-212 (591)
50 PRK08275 putative oxidoreducta 96.9 0.0089 1.9E-07 65.0 12.5 57 191-249 142-200 (554)
51 PRK08071 L-aspartate oxidase; 96.9 0.0086 1.9E-07 64.3 12.0 49 199-250 142-191 (510)
52 PRK12409 D-amino acid dehydrog 96.9 0.0071 1.5E-07 63.1 11.1 57 195-256 206-264 (410)
53 COG0579 Predicted dehydrogenas 96.8 0.0033 7.2E-08 64.9 7.6 65 191-262 159-223 (429)
54 PRK13800 putative oxidoreducta 96.8 0.013 2.8E-07 67.4 12.8 49 198-249 155-205 (897)
55 PRK00711 D-amino acid dehydrog 96.6 0.012 2.5E-07 61.6 10.5 52 196-255 211-262 (416)
56 PRK06069 sdhA succinate dehydr 96.5 0.029 6.2E-07 61.4 12.6 51 196-249 148-200 (577)
57 PRK11728 hydroxyglutarate oxid 96.5 0.016 3.4E-07 60.2 10.1 56 196-260 159-214 (393)
58 TIGR01373 soxB sarcosine oxida 96.2 0.014 3E-07 60.9 7.8 57 196-259 193-249 (407)
59 TIGR02352 thiamin_ThiO glycine 96.2 0.027 5.9E-07 56.7 9.7 46 196-248 147-192 (337)
60 TIGR01377 soxA_mon sarcosine o 96.0 0.097 2.1E-06 53.8 12.9 55 196-259 155-209 (380)
61 PRK12839 hypothetical protein; 95.9 0.018 4E-07 62.6 7.4 55 196-251 224-278 (572)
62 TIGR03364 HpnW_proposed FAD de 95.9 0.04 8.6E-07 56.4 9.5 22 1-23 12-33 (365)
63 COG1053 SdhA Succinate dehydro 95.9 0.031 6.7E-07 60.4 8.8 86 196-288 149-241 (562)
64 COG2081 Predicted flavoprotein 95.5 0.027 5.8E-07 56.9 5.9 57 188-253 114-171 (408)
65 PRK08401 L-aspartate oxidase; 95.4 0.088 1.9E-06 55.9 10.3 49 194-250 128-176 (466)
66 PRK13977 myosin-cross-reactive 95.1 0.042 9.2E-07 58.9 6.6 55 196-250 236-294 (576)
67 TIGR03329 Phn_aa_oxid putative 94.9 0.032 6.9E-07 59.2 5.0 46 195-249 192-237 (460)
68 PRK11259 solA N-methyltryptoph 94.8 0.32 6.9E-06 49.9 11.9 48 197-254 160-208 (376)
69 PF06039 Mqo: Malate:quinone o 94.4 0.11 2.4E-06 53.8 7.1 68 191-260 187-254 (488)
70 COG3380 Predicted NAD/FAD-depe 94.3 0.18 3.8E-06 48.4 7.6 70 186-266 108-177 (331)
71 COG3573 Predicted oxidoreducta 94.2 0.12 2.6E-06 50.8 6.6 63 192-257 159-236 (552)
72 PRK07512 L-aspartate oxidase; 93.7 0.099 2.1E-06 56.3 5.6 52 195-249 146-197 (513)
73 KOG2404|consensus 93.5 0.084 1.8E-06 51.7 4.1 48 200-250 159-207 (477)
74 PTZ00363 rab-GDP dissociation 93.5 0.28 6E-06 51.6 8.4 47 197-248 243-289 (443)
75 TIGR00275 flavoprotein, HI0933 93.5 0.088 1.9E-06 54.8 4.6 68 194-271 113-180 (400)
76 PRK07803 sdhA succinate dehydr 93.4 0.21 4.5E-06 55.1 7.7 48 200-250 165-214 (626)
77 PRK08626 fumarate reductase fl 93.4 0.14 2.9E-06 56.9 6.0 52 196-250 168-221 (657)
78 PRK09231 fumarate reductase fl 93.2 0.24 5.3E-06 54.1 7.7 53 195-250 143-197 (582)
79 COG0029 NadB Aspartate oxidase 93.1 0.1 2.2E-06 54.2 4.1 58 190-249 138-196 (518)
80 PRK08205 sdhA succinate dehydr 92.5 0.28 6.2E-06 53.7 6.9 58 192-250 146-207 (583)
81 PRK01747 mnmC bifunctional tRN 91.3 0.46 9.9E-06 52.9 7.0 56 189-254 412-467 (662)
82 PLN02464 glycerol-3-phosphate 91.3 0.46 1E-05 52.4 6.9 60 197-258 243-304 (627)
83 TIGR02061 aprA adenosine phosp 91.0 0.6 1.3E-05 51.3 7.3 51 199-250 139-192 (614)
84 PF13738 Pyr_redox_3: Pyridine 90.5 0.17 3.6E-06 46.9 2.2 62 190-258 86-147 (203)
85 PRK05257 malate:quinone oxidor 90.1 1 2.2E-05 48.1 8.1 66 191-260 189-256 (494)
86 PRK13339 malate:quinone oxidor 89.8 1.2 2.5E-05 47.7 8.1 69 189-261 188-258 (497)
87 TIGR03378 glycerol3P_GlpB glyc 89.8 0.57 1.2E-05 48.6 5.6 58 196-257 273-330 (419)
88 PTZ00383 malate:quinone oxidor 88.8 1 2.3E-05 48.1 6.9 54 200-261 231-284 (497)
89 PRK05329 anaerobic glycerol-3- 88.6 0.84 1.8E-05 47.7 5.9 58 192-253 265-322 (422)
90 TIGR01320 mal_quin_oxido malat 88.2 1.5 3.2E-05 46.8 7.6 60 197-260 189-250 (483)
91 PF12831 FAD_oxidored: FAD dep 87.4 0.18 3.8E-06 53.0 0.0 63 191-259 95-157 (428)
92 PLN02661 Putative thiazole syn 86.4 1.1 2.4E-05 45.4 5.0 55 191-248 178-243 (357)
93 COG0578 GlpA Glycerol-3-phosph 86.2 1.3 2.9E-05 47.2 5.7 60 197-261 175-236 (532)
94 PF13450 NAD_binding_8: NAD(P) 86.1 0.27 5.9E-06 37.0 0.4 24 1-25 8-31 (68)
95 PF01134 GIDA: Glucose inhibit 83.3 2.5 5.5E-05 43.4 6.1 49 196-251 106-154 (392)
96 PRK06185 hypothetical protein; 82.6 3.4 7.3E-05 42.8 7.0 61 196-261 119-179 (407)
97 PRK04176 ribulose-1,5-biphosph 81.8 2.2 4.7E-05 41.4 4.8 50 197-248 115-172 (257)
98 TIGR02733 desat_CrtD C-3',4' d 80.9 2.1 4.5E-05 45.8 4.8 56 196-254 242-299 (492)
99 TIGR02730 carot_isom carotene 80.9 1.9 4E-05 46.2 4.4 56 194-255 237-292 (493)
100 KOG0042|consensus 76.9 1.3 2.8E-05 46.6 1.6 71 180-255 221-293 (680)
101 TIGR02734 crtI_fam phytoene de 74.5 3.6 7.7E-05 44.1 4.3 53 197-255 230-282 (502)
102 TIGR03862 flavo_PP4765 unchara 74.4 8.3 0.00018 39.6 6.7 55 191-253 91-145 (376)
103 TIGR02732 zeta_caro_desat caro 74.0 4.2 9E-05 43.3 4.6 57 197-254 230-289 (474)
104 PRK12266 glpD glycerol-3-phosp 73.8 8.6 0.00019 41.4 7.0 58 197-259 166-226 (508)
105 COG0644 FixC Dehydrogenases (f 73.1 1.5 3.2E-05 45.6 0.9 51 191-247 100-150 (396)
106 TIGR00292 thiazole biosynthesi 72.4 6.4 0.00014 38.1 5.1 58 197-255 111-177 (254)
107 PF03486 HI0933_like: HI0933-l 70.9 3.9 8.4E-05 42.6 3.4 71 196-274 119-189 (409)
108 PRK05192 tRNA uridine 5-carbox 70.9 6.6 0.00014 42.9 5.2 47 196-249 111-157 (618)
109 TIGR02731 phytoene_desat phyto 70.8 5.7 0.00012 41.9 4.7 48 198-247 225-274 (453)
110 PRK10157 putative oxidoreducta 70.1 11 0.00024 39.5 6.7 62 189-259 111-172 (428)
111 TIGR00136 gidA glucose-inhibit 68.2 15 0.00034 40.1 7.3 54 196-255 107-160 (617)
112 PRK13369 glycerol-3-phosphate 65.6 16 0.00035 39.2 6.9 54 197-255 166-220 (502)
113 PRK15317 alkyl hydroperoxide r 65.5 22 0.00048 38.3 8.0 58 197-257 398-457 (517)
114 TIGR01292 TRX_reduct thioredox 65.4 23 0.00049 34.6 7.5 57 197-257 188-246 (300)
115 COG1635 THI4 Ribulose 1,5-bisp 65.3 2.5 5.5E-05 39.5 0.6 45 200-246 123-175 (262)
116 PLN02487 zeta-carotene desatur 65.3 7.1 0.00015 42.6 4.1 57 197-254 306-365 (569)
117 PLN02172 flavin-containing mon 65.2 7.7 0.00017 41.1 4.3 68 188-259 113-183 (461)
118 COG1233 Phytoene dehydrogenase 63.7 2.6 5.5E-05 45.1 0.3 55 194-256 232-287 (487)
119 PRK07364 2-octaprenyl-6-methox 63.4 17 0.00037 37.6 6.5 57 189-249 125-181 (415)
120 COG3634 AhpF Alkyl hydroperoxi 63.3 20 0.00044 36.0 6.3 59 196-257 400-460 (520)
121 PLN02985 squalene monooxygenas 62.7 19 0.00041 38.8 6.7 57 191-251 153-210 (514)
122 PRK10157 putative oxidoreducta 62.0 3.3 7.1E-05 43.5 0.8 24 1-25 17-40 (428)
123 TIGR03197 MnmC_Cterm tRNA U-34 61.2 20 0.00044 36.7 6.5 52 194-254 143-194 (381)
124 PRK07208 hypothetical protein; 60.6 15 0.00032 39.1 5.5 56 197-254 229-285 (479)
125 PRK10015 oxidoreductase; Provi 59.9 3.9 8.4E-05 43.0 0.9 52 189-247 111-162 (429)
126 PRK06126 hypothetical protein; 59.9 23 0.0005 38.4 6.9 49 196-248 137-187 (545)
127 COG0562 Glf UDP-galactopyranos 59.8 3.5 7.6E-05 40.8 0.5 24 1-25 13-36 (374)
128 TIGR02734 crtI_fam phytoene de 58.7 4 8.6E-05 43.8 0.7 24 1-25 10-33 (502)
129 KOG4254|consensus 57.8 7.2 0.00016 40.4 2.3 61 191-257 269-329 (561)
130 PRK10262 thioredoxin reductase 57.7 51 0.0011 32.8 8.5 62 194-259 193-257 (321)
131 PRK12810 gltD glutamate syntha 56.7 26 0.00055 37.3 6.5 59 197-258 340-410 (471)
132 PF01593 Amino_oxidase: Flavin 56.1 4.2 9.2E-05 41.8 0.4 24 1-25 3-26 (450)
133 TIGR01316 gltA glutamate synth 55.6 32 0.00068 36.4 6.9 60 197-258 320-396 (449)
134 PF01946 Thi4: Thi4 family; PD 55.4 2.9 6.4E-05 39.1 -0.8 47 198-246 108-162 (230)
135 PF13434 K_oxygenase: L-lysine 54.5 19 0.0004 36.6 4.7 60 191-253 100-161 (341)
136 PRK10015 oxidoreductase; Provi 52.5 23 0.00049 37.2 5.2 23 1-24 17-39 (429)
137 TIGR02730 carot_isom carotene 52.2 5.6 0.00012 42.5 0.6 24 1-25 12-35 (493)
138 PRK12831 putative oxidoreducta 52.0 43 0.00094 35.5 7.2 56 197-254 329-401 (464)
139 PF06100 Strep_67kDa_ant: Stre 51.8 40 0.00086 35.7 6.6 67 183-249 201-274 (500)
140 PRK07233 hypothetical protein; 51.6 15 0.00033 38.1 3.8 51 197-254 209-259 (434)
141 TIGR03140 AhpF alkyl hydropero 51.3 53 0.0011 35.4 7.9 55 198-255 400-456 (515)
142 COG1233 Phytoene dehydrogenase 50.9 14 0.00031 39.4 3.5 24 1-25 15-38 (487)
143 TIGR00031 UDP-GALP_mutase UDP- 50.5 6.7 0.00015 40.3 0.8 23 1-24 13-35 (377)
144 TIGR00292 thiazole biosynthesi 49.6 6.7 0.00014 38.0 0.6 23 1-24 33-55 (254)
145 TIGR02032 GG-red-SF geranylger 49.3 34 0.00074 33.1 5.6 52 191-248 96-147 (295)
146 PRK07818 dihydrolipoamide dehy 48.4 33 0.00072 36.3 5.7 56 194-253 221-277 (466)
147 TIGR02733 desat_CrtD C-3',4' d 47.4 7.6 0.00017 41.5 0.7 24 1-25 13-36 (492)
148 TIGR02032 GG-red-SF geranylger 47.4 7.9 0.00017 37.7 0.7 24 1-25 12-35 (295)
149 PLN02268 probable polyamine ox 47.3 8 0.00017 40.5 0.8 24 1-25 12-35 (435)
150 PF12831 FAD_oxidored: FAD dep 47.2 7 0.00015 41.0 0.4 23 1-24 11-33 (428)
151 KOG1298|consensus 47.2 8.2 0.00018 39.2 0.8 52 195-250 157-209 (509)
152 TIGR01318 gltD_gamma_fam gluta 46.2 48 0.001 35.2 6.5 59 198-258 332-408 (467)
153 PRK04176 ribulose-1,5-biphosph 45.2 9.2 0.0002 37.1 0.8 22 1-23 37-58 (257)
154 PF13434 K_oxygenase: L-lysine 43.8 40 0.00087 34.2 5.2 47 197-246 290-338 (341)
155 COG0654 UbiH 2-polyprenyl-6-me 43.7 50 0.0011 33.9 6.1 50 195-251 114-163 (387)
156 TIGR02028 ChlP geranylgeranyl 43.7 8.2 0.00018 40.0 0.2 58 188-247 95-158 (398)
157 PRK07608 ubiquinone biosynthes 43.4 10 0.00022 38.9 0.9 53 188-248 114-166 (388)
158 PF03486 HI0933_like: HI0933-l 43.3 8.2 0.00018 40.2 0.1 24 1-25 12-35 (409)
159 PRK06416 dihydrolipoamide dehy 42.9 53 0.0012 34.7 6.3 54 196-253 223-276 (462)
160 TIGR02053 MerA mercuric reduct 42.7 41 0.00089 35.5 5.4 55 194-252 215-269 (463)
161 TIGR02023 BchP-ChlP geranylger 42.5 8.9 0.00019 39.5 0.2 54 189-247 95-153 (388)
162 TIGR01350 lipoamide_DH dihydro 42.0 48 0.001 34.9 5.8 52 196-252 221-272 (461)
163 PRK06183 mhpA 3-(3-hydroxyphen 41.9 80 0.0017 34.2 7.5 55 197-255 125-180 (538)
164 PRK07843 3-ketosteroid-delta-1 41.9 14 0.00029 40.4 1.6 23 1-24 19-41 (557)
165 TIGR01790 carotene-cycl lycope 41.6 11 0.00024 38.6 0.8 23 1-24 11-33 (388)
166 COG0445 GidA Flavin-dependent 41.3 28 0.0006 37.3 3.6 52 196-253 111-162 (621)
167 TIGR01988 Ubi-OHases Ubiquinon 40.9 12 0.00027 38.1 1.0 54 187-247 108-161 (385)
168 PRK08243 4-hydroxybenzoate 3-m 40.5 54 0.0012 33.7 5.7 51 197-251 114-164 (392)
169 PRK06370 mercuric reductase; V 40.2 56 0.0012 34.6 5.9 55 194-252 220-274 (463)
170 PRK07364 2-octaprenyl-6-methox 40.0 13 0.00028 38.6 1.0 24 1-25 30-53 (415)
171 PRK07233 hypothetical protein; 39.6 11 0.00025 39.1 0.5 24 1-25 11-34 (434)
172 PRK11445 putative oxidoreducta 39.4 92 0.002 31.5 7.2 56 191-251 104-159 (351)
173 PRK11883 protoporphyrinogen ox 39.3 11 0.00024 39.5 0.4 24 1-25 12-37 (451)
174 PLN02612 phytoene desaturase 39.2 34 0.00075 37.3 4.2 45 198-247 320-364 (567)
175 PF05834 Lycopene_cycl: Lycope 39.0 15 0.00032 37.8 1.2 24 1-25 11-36 (374)
176 PRK09564 coenzyme A disulfide 39.0 60 0.0013 34.0 5.9 61 191-259 196-256 (444)
177 PRK08244 hypothetical protein; 39.0 61 0.0013 34.5 6.0 55 190-249 104-159 (493)
178 PRK12769 putative oxidoreducta 38.8 66 0.0014 35.8 6.4 60 197-258 517-594 (654)
179 PRK06327 dihydrolipoamide dehy 38.8 48 0.001 35.2 5.1 55 196-254 234-289 (475)
180 COG3349 Uncharacterized conser 38.6 12 0.00027 39.4 0.6 56 197-257 226-283 (485)
181 PLN00093 geranylgeranyl diphos 38.5 11 0.00024 39.9 0.2 22 1-23 51-72 (450)
182 PF07992 Pyr_redox_2: Pyridine 38.1 61 0.0013 29.3 5.2 49 197-248 69-121 (201)
183 PRK13369 glycerol-3-phosphate 38.0 12 0.00026 40.1 0.4 22 1-23 18-39 (502)
184 PRK04965 NADH:flavorubredoxin 37.7 76 0.0016 32.4 6.3 60 194-260 191-250 (377)
185 PRK08773 2-octaprenyl-3-methyl 37.6 14 0.00031 38.0 0.9 55 196-259 123-177 (392)
186 PRK12266 glpD glycerol-3-phosp 37.4 13 0.00028 40.0 0.5 23 1-24 18-40 (508)
187 PRK12809 putative oxidoreducta 37.2 74 0.0016 35.3 6.5 50 198-249 501-567 (639)
188 COG2509 Uncharacterized FAD-de 37.0 96 0.0021 32.5 6.6 50 198-253 185-234 (486)
189 TIGR01984 UbiH 2-polyprenyl-6- 36.9 75 0.0016 32.3 6.1 54 187-247 107-160 (382)
190 COG3075 GlpB Anaerobic glycero 36.8 24 0.00052 35.3 2.2 51 197-251 269-319 (421)
191 TIGR01372 soxA sarcosine oxida 36.5 80 0.0017 37.1 6.8 61 196-260 361-422 (985)
192 TIGR01789 lycopene_cycl lycope 36.4 14 0.0003 38.0 0.5 23 1-23 11-34 (370)
193 PRK09126 hypothetical protein; 35.8 14 0.00031 37.9 0.6 45 196-247 121-165 (392)
194 TIGR01984 UbiH 2-polyprenyl-6- 35.6 17 0.00037 37.2 1.0 25 1-26 11-36 (382)
195 COG0644 FixC Dehydrogenases (f 35.5 54 0.0012 33.9 4.8 24 1-25 15-38 (396)
196 PRK07045 putative monooxygenas 35.5 90 0.0019 31.9 6.4 51 195-251 116-166 (388)
197 PF01494 FAD_binding_3: FAD bi 35.3 16 0.00034 36.5 0.8 59 189-251 114-173 (356)
198 PLN02464 glycerol-3-phosphate 35.3 15 0.00032 40.7 0.5 22 1-23 83-104 (627)
199 TIGR02028 ChlP geranylgeranyl 34.8 76 0.0016 32.8 5.7 22 1-23 12-33 (398)
200 PF00743 FMO-like: Flavin-bind 34.8 31 0.00068 37.3 2.9 64 190-255 88-156 (531)
201 PRK11749 dihydropyrimidine deh 34.5 76 0.0016 33.5 5.8 56 197-255 322-393 (457)
202 PLN02661 Putative thiazole syn 34.3 17 0.00037 36.9 0.8 23 1-23 104-126 (357)
203 PF13738 Pyr_redox_3: Pyridine 34.2 14 0.0003 33.8 0.1 23 1-24 9-32 (203)
204 TIGR00562 proto_IX_ox protopor 33.9 16 0.00035 38.5 0.5 47 201-254 238-284 (462)
205 TIGR01988 Ubi-OHases Ubiquinon 33.9 85 0.0019 31.8 6.0 24 1-25 11-34 (385)
206 PRK08020 ubiF 2-octaprenyl-3-m 33.8 18 0.00039 37.1 0.9 48 196-251 123-170 (391)
207 COG3486 IucD Lysine/ornithine 33.7 1.2E+02 0.0026 31.3 6.6 55 198-255 290-347 (436)
208 PRK08013 oxidoreductase; Provi 33.3 19 0.0004 37.3 0.9 23 1-24 15-37 (400)
209 PLN02576 protoporphyrinogen ox 32.4 17 0.00037 38.8 0.4 24 1-25 24-48 (496)
210 PF01494 FAD_binding_3: FAD bi 32.3 78 0.0017 31.4 5.3 24 1-25 13-36 (356)
211 PF01593 Amino_oxidase: Flavin 31.8 63 0.0014 32.9 4.6 41 200-247 223-263 (450)
212 KOG0029|consensus 31.8 17 0.00036 39.0 0.2 24 1-25 27-50 (501)
213 PRK07588 hypothetical protein; 31.4 19 0.0004 37.1 0.5 23 1-24 12-34 (391)
214 PRK08132 FAD-dependent oxidore 31.4 1E+02 0.0023 33.3 6.4 56 191-250 130-186 (547)
215 COG0665 DadA Glycine/D-amino a 31.2 19 0.00041 36.8 0.5 54 196-258 167-220 (387)
216 PRK07208 hypothetical protein; 31.2 18 0.00039 38.4 0.4 24 1-25 16-39 (479)
217 PRK13512 coenzyme A disulfide 31.1 92 0.002 32.7 5.7 47 197-249 69-117 (438)
218 PRK07494 2-octaprenyl-6-methox 31.1 23 0.00049 36.3 1.1 22 1-23 19-40 (388)
219 PRK12771 putative glutamate sy 31.1 1.2E+02 0.0027 33.0 6.8 59 198-259 317-391 (564)
220 KOG1298|consensus 30.9 44 0.00096 34.2 3.0 24 1-25 57-80 (509)
221 PRK05714 2-octaprenyl-3-methyl 30.8 22 0.00049 36.7 1.0 44 197-247 123-166 (405)
222 COG2072 TrkA Predicted flavopr 30.7 89 0.0019 32.9 5.5 56 200-258 98-153 (443)
223 COG1231 Monoamine oxidase [Ami 30.5 21 0.00045 37.2 0.6 24 1-25 19-42 (450)
224 PRK08773 2-octaprenyl-3-methyl 30.4 94 0.002 31.8 5.6 23 1-24 18-40 (392)
225 PLN02985 squalene monooxygenas 30.3 19 0.0004 38.9 0.3 23 1-24 55-77 (514)
226 TIGR02731 phytoene_desat phyto 30.1 20 0.00044 37.7 0.5 24 1-25 11-34 (453)
227 PRK07045 putative monooxygenas 30.1 21 0.00045 36.7 0.6 24 1-25 17-40 (388)
228 PRK06115 dihydrolipoamide dehy 30.1 80 0.0017 33.4 5.1 57 194-254 223-281 (466)
229 PRK05257 malate:quinone oxidor 30.0 20 0.00043 38.4 0.5 24 1-24 17-41 (494)
230 TIGR01438 TGR thioredoxin and 29.8 77 0.0017 33.8 4.9 58 194-255 228-285 (484)
231 PRK05732 2-octaprenyl-6-methox 29.8 1E+02 0.0023 31.4 5.8 46 196-248 123-168 (395)
232 TIGR01320 mal_quin_oxido malat 29.7 20 0.00043 38.3 0.4 23 1-23 12-35 (483)
233 KOG2311|consensus 29.5 47 0.001 35.0 3.0 55 195-253 134-190 (679)
234 COG0492 TrxB Thioredoxin reduc 29.3 1.9E+02 0.0042 28.7 7.3 63 191-258 184-247 (305)
235 PRK07538 hypothetical protein; 29.1 1E+02 0.0022 31.9 5.6 50 199-251 117-166 (413)
236 PRK06912 acoL dihydrolipoamide 29.0 81 0.0018 33.3 4.9 50 196-251 221-270 (458)
237 PRK12779 putative bifunctional 28.6 1.8E+02 0.0039 34.0 7.9 54 198-252 496-565 (944)
238 PRK06753 hypothetical protein; 28.4 22 0.00048 36.2 0.5 23 1-24 12-34 (373)
239 PRK08163 salicylate hydroxylas 28.3 1E+02 0.0023 31.5 5.5 58 187-251 111-168 (396)
240 PRK06185 hypothetical protein; 28.2 22 0.00047 36.8 0.4 23 1-24 18-40 (407)
241 PRK06184 hypothetical protein; 28.2 1.3E+02 0.0027 32.2 6.3 49 197-249 120-168 (502)
242 TIGR03467 HpnE squalene-associ 27.6 28 0.00061 35.9 1.1 49 198-252 209-257 (419)
243 PRK12770 putative glutamate sy 27.5 1.2E+02 0.0025 30.8 5.6 59 197-259 221-297 (352)
244 PRK14989 nitrite reductase sub 27.1 1.2E+02 0.0026 35.0 6.0 64 191-259 192-255 (847)
245 COG0654 UbiH 2-polyprenyl-6-me 27.0 24 0.00052 36.4 0.4 21 1-22 14-34 (387)
246 PRK08010 pyridine nucleotide-d 27.0 26 0.00056 36.8 0.7 53 194-254 207-259 (441)
247 PRK13984 putative oxidoreducta 26.9 1.6E+02 0.0035 32.3 6.9 55 198-255 474-544 (604)
248 KOG2852|consensus 26.8 73 0.0016 31.4 3.5 64 191-259 153-217 (380)
249 PRK06617 2-octaprenyl-6-methox 26.6 28 0.0006 35.7 0.8 22 1-23 13-34 (374)
250 PRK07608 ubiquinone biosynthes 26.3 1.2E+02 0.0027 30.8 5.6 24 1-25 17-40 (388)
251 KOG2853|consensus 26.2 1.4E+02 0.003 30.2 5.4 56 204-261 260-331 (509)
252 PRK12775 putative trifunctiona 26.1 1.6E+02 0.0034 34.8 6.9 57 197-255 620-692 (1006)
253 PLN02463 lycopene beta cyclase 26.0 26 0.00057 37.0 0.5 22 1-23 40-61 (447)
254 PRK08243 4-hydroxybenzoate 3-m 25.8 25 0.00055 36.2 0.3 23 1-24 14-36 (392)
255 PRK05976 dihydrolipoamide dehy 25.3 1.1E+02 0.0023 32.6 5.0 55 196-253 231-285 (472)
256 PF00070 Pyr_redox: Pyridine n 25.1 66 0.0014 24.5 2.5 34 191-227 45-78 (80)
257 PRK08850 2-octaprenyl-6-methox 25.0 29 0.00063 35.9 0.6 48 195-250 121-168 (405)
258 TIGR03385 CoA_CoA_reduc CoA-di 24.7 79 0.0017 32.9 3.8 55 197-259 55-111 (427)
259 TIGR02374 nitri_red_nirB nitri 24.4 1.3E+02 0.0027 34.5 5.6 59 194-259 190-248 (785)
260 PRK09754 phenylpropionate diox 24.4 1.5E+02 0.0032 30.6 5.7 62 191-260 191-252 (396)
261 PRK08244 hypothetical protein; 24.3 30 0.00065 36.9 0.6 24 1-25 14-37 (493)
262 PRK06116 glutathione reductase 24.2 29 0.00062 36.6 0.4 52 195-252 217-268 (450)
263 PRK07333 2-octaprenyl-6-methox 24.1 34 0.00073 35.2 0.9 22 1-23 13-36 (403)
264 TIGR03467 HpnE squalene-associ 23.8 82 0.0018 32.3 3.7 22 3-25 1-22 (419)
265 PRK12416 protoporphyrinogen ox 23.5 30 0.00065 36.5 0.4 39 201-246 239-277 (463)
266 PRK08849 2-octaprenyl-3-methyl 23.4 30 0.00064 35.6 0.3 48 196-251 121-168 (384)
267 PRK07251 pyridine nucleotide-d 23.4 32 0.0007 36.1 0.6 50 196-253 208-257 (438)
268 PLN02697 lycopene epsilon cycl 22.9 31 0.00068 37.2 0.4 50 198-255 204-253 (529)
269 PRK06834 hypothetical protein; 22.7 1.6E+02 0.0035 31.4 5.8 53 190-249 104-156 (488)
270 TIGR01421 gluta_reduc_1 glutat 22.7 31 0.00066 36.5 0.2 54 196-254 217-270 (450)
271 PRK05249 soluble pyridine nucl 22.5 34 0.00075 36.1 0.6 23 1-24 17-39 (461)
272 PRK07236 hypothetical protein; 22.4 33 0.00071 35.2 0.4 22 1-23 18-39 (386)
273 PRK07190 hypothetical protein; 22.3 1.4E+02 0.0031 31.8 5.3 53 190-249 113-165 (487)
274 PRK06912 acoL dihydrolipoamide 22.3 33 0.00071 36.3 0.4 22 1-23 12-33 (458)
275 PRK13339 malate:quinone oxidor 22.2 33 0.00073 36.7 0.4 22 1-22 18-40 (497)
276 PRK06475 salicylate hydroxylas 21.9 1.6E+02 0.0035 30.3 5.5 50 197-251 119-168 (400)
277 PTZ00367 squalene epoxidase; P 21.8 36 0.00079 37.1 0.6 22 1-23 45-66 (567)
278 PRK05976 dihydrolipoamide dehy 21.8 34 0.00074 36.3 0.4 21 1-22 16-36 (472)
279 TIGR01292 TRX_reduct thioredox 21.8 32 0.0007 33.4 0.2 22 1-23 12-33 (300)
280 TIGR02360 pbenz_hydroxyl 4-hyd 21.7 31 0.00068 35.5 0.1 20 1-21 14-33 (390)
281 PRK09126 hypothetical protein; 21.7 2.1E+02 0.0046 29.1 6.3 23 1-24 15-37 (392)
282 PRK12778 putative bifunctional 21.6 1.7E+02 0.0036 33.3 5.9 55 197-253 619-690 (752)
283 PF02302 PTS_IIB: PTS system, 21.6 99 0.0021 24.0 3.0 33 239-275 1-34 (90)
284 PRK05732 2-octaprenyl-6-methox 21.6 38 0.00082 34.7 0.7 21 1-22 15-38 (395)
285 PRK08020 ubiF 2-octaprenyl-3-m 21.3 2.1E+02 0.0046 29.1 6.2 22 1-23 17-38 (391)
286 PRK06416 dihydrolipoamide dehy 21.3 35 0.00077 36.0 0.4 22 1-23 16-37 (462)
287 TIGR02023 BchP-ChlP geranylger 21.0 1.7E+02 0.0038 29.9 5.5 21 1-22 12-32 (388)
288 PRK06834 hypothetical protein; 21.0 38 0.00083 36.2 0.6 23 1-24 15-37 (488)
289 PRK05329 anaerobic glycerol-3- 20.6 35 0.00076 35.7 0.2 22 1-23 14-35 (422)
290 PRK05868 hypothetical protein; 20.5 41 0.00089 34.4 0.6 23 1-24 13-35 (372)
291 TIGR01350 lipoamide_DH dihydro 20.5 40 0.00087 35.5 0.6 20 1-21 13-32 (461)
292 KOG2820|consensus 20.5 44 0.00096 33.6 0.8 57 196-257 163-219 (399)
293 COG0665 DadA Glycine/D-amino a 20.4 1.6E+02 0.0035 29.8 5.1 23 1-24 16-38 (387)
294 TIGR03385 CoA_CoA_reduc CoA-di 20.3 2.1E+02 0.0046 29.7 6.0 57 194-259 187-243 (427)
295 TIGR03197 MnmC_Cterm tRNA U-34 20.2 50 0.0011 33.8 1.2 19 4-23 1-19 (381)
296 PRK14727 putative mercuric red 20.1 1.4E+02 0.0031 31.6 4.8 53 194-254 236-288 (479)
297 PRK07538 hypothetical protein; 20.1 41 0.00089 34.9 0.6 23 1-24 12-34 (413)
No 1
>KOG1238|consensus
Probab=100.00 E-value=2e-105 Score=823.14 Aligned_cols=505 Identities=44% Similarity=0.796 Sum_probs=451.7
Q ss_pred CchhccccccCCCCeEEEEcccCCCCCCcccccccccccCCCccceEeeeeccCcccCCCCceeeccCCcccchhhhhcc
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEENALTDIPETAHYLQFTKFNWNFTTEFQPGACRGLNNERCPWPAGRAVGGASVINN 80 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~n~ 80 (517)
||+||+||||++.+||||||||+.++...++|.+...++.+.+||.|.++|+..+|+.+.++.+.|+|||+|||||++|+
T Consensus 69 GcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m~~~~c~wpRGrVLGGsS~iN~ 148 (623)
T KOG1238|consen 69 GCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQHACLAMSEDRCYWPRGRVLGGSSVLNA 148 (623)
T ss_pred hHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccChhhhhhhcCCceecCccceecccccccc
Confidence 89999999999999999999999987778889777778889999999999999999999999999999999999999999
Q ss_pred eeeecCChhhHHHHHHhCCCCCCccchHHHHHhhccCCCCCCCCCCcccCCCceEeecCCCCChhHHHHHHHHHHcCCCC
Q psy10349 81 NIYTRGNPNDFDRWLEAGNVGWGYKDVLPYFKKSEDIDVPELKRSEYHGVGGYLNVDYSPYKSKLMDAFLESAPEVGLNL 160 (517)
Q Consensus 81 ~~~~r~~~~df~~w~~~g~~~W~~~~l~py~~~~e~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~a~~~~G~~~ 160 (517)
|+|.|+++.|||+|++.|++||+|++++|||+|+|+...+.....++|+..||+.+....+.+++...|.++.+++|.+.
T Consensus 149 m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~~~~~~~~~~~~~ag~e~G~~~ 228 (623)
T KOG1238|consen 149 MFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAGVYPNNLFTAFHRAGTEIGGSI 228 (623)
T ss_pred eEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceeccccccCchhhHhHHhHHhcCCCc
Confidence 99999999999999999999999999999999999997766556669999999999998999999999999999999777
Q ss_pred CCCCCCCCCcccccccccccCCcccchhhhhhcccCC-CCCeEEEcCcEEEEEEecCCCCeEEEEEEEeC-CeEEEEEec
Q psy10349 161 TDYNSPDGNVGFSRIQGTIQFGRRFSASQAFLRPIVE-RPNFHVMKKARVLKVLIDPNTKRVFGVEFMKN-NKKRVVYAK 238 (517)
Q Consensus 161 ~d~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~-~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~-g~~~~v~a~ 238 (517)
.|+|+.. +.|+...+.++++|.|+|++.+|+.++.. |+||+|..++.|+||++|..++++.||++.++ |++++++|+
T Consensus 229 ~D~nG~~-~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a~gv~~~~~~~~~~~v~a~ 307 (623)
T KOG1238|consen 229 FDRNGER-HTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAGKRAKGVEFVRDGGKEHTVKAR 307 (623)
T ss_pred cCCCCcc-ccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCCceEEEEEEEecCceeeeeccc
Confidence 8999999 99999999999999999999999999876 99999999999999999988899999999987 899999999
Q ss_pred ceEEEecCCcCcHHHHHHcCCCChhhhhhCCCCeeeeCc-cccccccCcCCcceEEEEccccccchhhhhhhHHHHHHHH
Q psy10349 239 KEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADLQ-VGENLQEHPAFASLAFTVNQKVGLVSDRIFSNLAKETIKA 317 (517)
Q Consensus 239 keVIlaaGai~tp~lLl~SGIGp~~~L~~~GI~~~~dlp-VG~nl~dH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (517)
||||||||||+||||||+|||||+++|+++|||++.||| ||+|||||+.. .+...+..+.+.....+. .+ ..+.+
T Consensus 308 kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~-~~~~~~~~~~~~~~~~~~-~~--~~~~~ 383 (623)
T KOG1238|consen 308 KEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMN-PGFVFSTNPVELSLIRLV-GI--TTVGQ 383 (623)
T ss_pred ceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCccccccccccccc-ceeeecCCCccccccccc-cc--hHHHH
Confidence 999999999999999999999999999999999999999 99999999997 444444444333222222 22 45666
Q ss_pred h--ccCC-cccCCccceEEEEecCCCCCCCCCCCeeEEeecccchhhhhccchhhhhhcCCChhhHHhhhcccCCCCeEE
Q psy10349 318 F--TNQG-WTTTLGCEGLGYVRTKYNNYPPGVPDIEYIFVPASLAIEEEKGGSLLRKTMGIPDRTFKELFRDVKNKDAWS 394 (517)
Q Consensus 318 ~--~~~G-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (517)
| .++| +...+ .+..+|+++.....+..+||+|+++.++.+.+ +.+..+....+ ++++.++.+......+.
T Consensus 384 yl~~~~G~~~~~~-~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~---~~~~~~~~~~~---~~y~~~~~~~~~~~~~~ 456 (623)
T KOG1238|consen 384 YLEGGSGPLASPG-VETLGFINTVSSNLSLDWPDIELHFVAGSLSS---DGLTALRKALG---EIYQALFGELTNSDSFV 456 (623)
T ss_pred HHHcCCCCcccCc-ceeeEEeccccccCcCCCCCeeEEeccccccc---cchhhhhhhcc---hHHHHhhhhhhcCceeE
Confidence 6 6778 66333 78899999887776678899998887766655 54444555444 56666666665556788
Q ss_pred EeeeccccCceeEEEccCCCCCCCceEecCCCCChhhHHHHHHHHHHHHHHhcCchhhhhhhccccccCCCCcCCCCCCH
Q psy10349 395 IWPMLMYPESRGYVRLKSADPMVYPAVQSNFFQDPLDLLRIVEGIKMVIELSKTNAFQKYKSKLSTRILPACKKHKYGSD 474 (517)
Q Consensus 395 ~~~~~~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~s~ 474 (517)
|+..+++|+|||+|+|.|+||++.|+|++||+.+|.|++.++++|+.+.++.++++|++++.++...++|+|+.....||
T Consensus 457 i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~~~~~~c~~~~~~sd 536 (623)
T KOG1238|consen 457 IFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLWKKPVPGCDLLAFLSD 536 (623)
T ss_pred EeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhccccCCCcccccCCCH
Confidence 89999999999999999999999999999999999999999999999999999999999999998889999998889999
Q ss_pred HHHHHHHHhcCCCCcccccccccccCCCCCCccCCCCeeeccC
Q psy10349 475 DYWGCCVRQLTMQMHHQCGTCKMGPDGDRTAVVDPRLRVHGIK 517 (517)
Q Consensus 475 ~~~~~~i~~~~~~~~H~~GTcrMG~~~d~~~VVD~~lrV~Gv~ 517 (517)
++|+||+|+.+.|.||++|||+|||..|+++|||+++|||||+
T Consensus 537 ~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~ 579 (623)
T KOG1238|consen 537 AYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVR 579 (623)
T ss_pred HHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceecccc
Confidence 9999999999999999999999999999999999999999985
No 2
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=7.9e-82 Score=675.77 Aligned_cols=472 Identities=36% Similarity=0.604 Sum_probs=373.8
Q ss_pred CchhccccccCCCCeEEEEcccCCCC---CCccccccccc-ccCCCccceEeeeeccCcccCCCCceeeccCCcccchhh
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEEN---ALTDIPETAHY-LQFTKFNWNFTTEFQPGACRGLNNERCPWPAGRAVGGAS 76 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~~---~~~~~p~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS 76 (517)
|||+|.||||+++.||||||+|+... .....|..+.. +..+.++|.|.+.|+. .+.++.+.+++||+|||||
T Consensus 11 G~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~----~~~~~~~~~~~g~~lGGss 86 (532)
T TIGR01810 11 GSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEP----HMNNRRVGHARGKVLGGSS 86 (532)
T ss_pred HHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCC----CCCCceEeeecccccCCCC
Confidence 79999999995558999999998542 23345543222 2234578999999987 5677889999999999999
Q ss_pred hhcceeeecCChhhHHHHHH-hCCCCCCccchHHHHHhhccCCCCCCCCCCcccCCCceEeecCCCCChhHHHHHHHHHH
Q psy10349 77 VINNNIYTRGNPNDFDRWLE-AGNVGWGYKDVLPYFKKSEDIDVPELKRSEYHGVGGYLNVDYSPYKSKLMDAFLESAPE 155 (517)
Q Consensus 77 ~~n~~~~~r~~~~df~~w~~-~g~~~W~~~~l~py~~~~e~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~a~~~ 155 (517)
+||+|+|+|+++.|||.|++ .|+++|+|++|+|||+|+|++++. ..++||.+||+.+..+.+..+..+.|.+++++
T Consensus 87 ~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~---~~~~~g~~G~~~v~~~~~~~~~~~~~~~a~~~ 163 (532)
T TIGR01810 87 SINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGG---EKPYRGHDGPIKVRRGPADNPLFQAFIEAGVE 163 (532)
T ss_pred CEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCC---CcccCCCCCCEEEecCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998 588999999999999999998764 23579999999999877778889999999999
Q ss_pred cCCCC-CCCCCCCCCcccccccccccCCcccchhhhhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEE
Q psy10349 156 VGLNL-TDYNSPDGNVGFSRIQGTIQFGRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRV 234 (517)
Q Consensus 156 ~G~~~-~d~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~ 234 (517)
+|++. .++++.. ..|++.|...|.+|.|+++..+||.++.+++|++|+++++|+||+++ +++|+||++...+...+
T Consensus 164 ~G~~~~~~~~~~~-~~g~~~~~~~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~--~~ra~GV~~~~~~~~~~ 240 (532)
T TIGR01810 164 AGYNKTPDVNGFR-QEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFE--GNRATGVEFKKGGRKEH 240 (532)
T ss_pred cCCCccCCCCCCC-ccceEEEEEEcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEec--CCeEEEEEEEeCCcEEE
Confidence 99998 6788776 77888888888899999999999999888999999999999999998 57999999987665566
Q ss_pred EEecceEEEecCCcCcHHHHHHcCCCChhhhhhCCCCeeeeCc-cccccccCcCCcceEEEEccccccchh-hhhhhHHH
Q psy10349 235 VYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADLQ-VGENLQEHPAFASLAFTVNQKVGLVSD-RIFSNLAK 312 (517)
Q Consensus 235 v~a~keVIlaaGai~tp~lLl~SGIGp~~~L~~~GI~~~~dlp-VG~nl~dH~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 312 (517)
+.++|+||||||||+||+|||+|||||+++|+++||++++||| ||+|||||+.+ .+.+.++.+...... ......
T Consensus 241 ~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~-~~~~~~~~~~~~~~~~~~~~~~-- 317 (532)
T TIGR01810 241 TEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEV-YVQHACKQPVSLYPSLNWLKQP-- 317 (532)
T ss_pred EEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccc-eeEEEecCCcccccccchhhhh--
Confidence 6667899999999999999999999999999999999999999 99999999997 788887654321100 000011
Q ss_pred HHHHHh--ccCC-cccCCccceEEEEecCCCCCCCCCCCeeEEeecccchhhhhccchhhhhhcCCChhhHHhhhcccCC
Q psy10349 313 ETIKAF--TNQG-WTTTLGCEGLGYVRTKYNNYPPGVPDIEYIFVPASLAIEEEKGGSLLRKTMGIPDRTFKELFRDVKN 389 (517)
Q Consensus 313 ~~~~~~--~~~G-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (517)
....+| .+.| +. .......+|.+... ....|++++.+.+..... .+. ....
T Consensus 318 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~~~----~~~------------------~~~~ 371 (532)
T TIGR01810 318 FIGAQWLFGRKGAGA-SNHFEGGGFVRSND---DVDYPNIQYHFLPVAIRY----DGT------------------KAPK 371 (532)
T ss_pred HHHHHHHhcCCCCcc-ccccceeEEEecCC---CCCCCCeEEEEEeeeecc----CCC------------------CCCC
Confidence 122244 3455 43 23334445654321 112466665443311000 000 0001
Q ss_pred CCeEEEeeeccccCceeEEEccCCCCCCCceEecCCCCChhhHHHHHHHHHHHHHHhcCchhhhhhhccccccCCCCcCC
Q psy10349 390 KDAWSIWPMLMYPESRGYVRLKSADPMVYPAVQSNFFQDPLDLLRIVEGIKMVIELSKTNAFQKYKSKLSTRILPACKKH 469 (517)
Q Consensus 390 ~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~ 469 (517)
...+.+...+++|+|||+|+|+++||++.|+|+++|+.+|.|++.|+++++++++++++.+++.+...+ ..|+.
T Consensus 372 ~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~p~~--- 445 (532)
T TIGR01810 372 AHGFQVHVGPMYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGE---ISPGP--- 445 (532)
T ss_pred CCcEEEEEeecCCCCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhccccc---cCCCC---
Confidence 123556667789999999999999999999999999999999999999999999999998887764322 23432
Q ss_pred CCCCHHHHHHHHHhcCCCCcccccccccccCCCCCCccCCCCeeeccC
Q psy10349 470 KYGSDDYWGCCVRQLTMQMHHQCGTCKMGPDGDRTAVVDPRLRVHGIK 517 (517)
Q Consensus 470 ~~~s~~~~~~~i~~~~~~~~H~~GTcrMG~~~d~~~VVD~~lrV~Gv~ 517 (517)
...+|++|++|+|+...+.+|++||||||++++++||||++||||||+
T Consensus 446 ~~~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~ 493 (532)
T TIGR01810 446 EVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGME 493 (532)
T ss_pred CCCCHHHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccC
Confidence 246899999999999999999999999998556689999999999986
No 3
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=6.2e-81 Score=672.32 Aligned_cols=469 Identities=37% Similarity=0.643 Sum_probs=372.8
Q ss_pred CchhccccccCCCCeEEEEcccCCC---CCCccccccccc-ccCCCccceEeeeeccCcccCCCCceeeccCCcccchhh
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE---NALTDIPETAHY-LQFTKFNWNFTTEFQPGACRGLNNERCPWPAGRAVGGAS 76 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~---~~~~~~p~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS 76 (517)
||++|.||||++|++|||||+|+.. ......|..... +....++|.|.+.|++ ...++.+.+++||+|||||
T Consensus 17 G~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~----~~~~~~~~~~~g~~lGGsS 92 (560)
T PRK02106 17 GCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEP----HMNNRRMECPRGKVLGGSS 92 (560)
T ss_pred HHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCC----CCCCCeeecccccccCCCC
Confidence 7999999999889999999999754 223345553322 2235679999998887 5667788999999999999
Q ss_pred hhcceeeecCChhhHHHHHHh-CCCCCCccchHHHHHhhccCCCCCCCCCCcccCCCceEeecC-CCCChhHHHHHHHHH
Q psy10349 77 VINNNIYTRGNPNDFDRWLEA-GNVGWGYKDVLPYFKKSEDIDVPELKRSEYHGVGGYLNVDYS-PYKSKLMDAFLESAP 154 (517)
Q Consensus 77 ~~n~~~~~r~~~~df~~w~~~-g~~~W~~~~l~py~~~~e~~~~~~~~~~~~~g~~g~~~~~~~-~~~~~~~~~~~~a~~ 154 (517)
+||+|+|+|+++.|||.|+.. |+++|+|++|+|||+|+|+++.. ...+||..||+++..+ .+.++..+.|.++++
T Consensus 93 ~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~---~~~~~g~~gp~~~~~~~~~~~~~~~~~~~a~~ 169 (560)
T PRK02106 93 SINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGG---EDDYRGGDGPLSVTRGKPGTNPLFQAFVEAGV 169 (560)
T ss_pred CccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCC---CccccCCCCCEEEeCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999987 88999999999999999998732 3457899999999865 556788899999999
Q ss_pred HcCCCC-CCCCCCCCCcccccccccccCCcccchhhhhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEE
Q psy10349 155 EVGLNL-TDYNSPDGNVGFSRIQGTIQFGRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKR 233 (517)
Q Consensus 155 ~~G~~~-~d~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~ 233 (517)
++|++. .|.+++. +.|++.|..+|.+|.|+++..+||.++.+++|++|++++.|+||+++ +++|+||++...+...
T Consensus 170 ~lG~~~~~~~~~~~-~~g~~~~~~~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~--~~~a~GV~~~~~~~~~ 246 (560)
T PRK02106 170 QAGYPRTDDLNGYQ-QEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFE--GKRAVGVEYERGGGRE 246 (560)
T ss_pred HcCCCcCCCCCCCC-CceeEEEeeecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEe--CCeEEEEEEEeCCcEE
Confidence 999998 6788877 88888888889999999999999999888999999999999999998 5799999998765555
Q ss_pred EEEecceEEEecCCcCcHHHHHHcCCCChhhhhhCCCCeeeeCc-cccccccCcCCcceEEEEccccccch--hhhhhhH
Q psy10349 234 VVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADLQ-VGENLQEHPAFASLAFTVNQKVGLVS--DRIFSNL 310 (517)
Q Consensus 234 ~v~a~keVIlaaGai~tp~lLl~SGIGp~~~L~~~GI~~~~dlp-VG~nl~dH~~~~~~~~~~~~~~~~~~--~~~~~~~ 310 (517)
++.++|+||||||||+||+|||+|||||+++|+++||++++||| ||+|||||+.+ .+.+.++++..... ..+. ..
T Consensus 247 ~~~~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~-~~~~~~~~~~~~~~~~~~~~-~~ 324 (560)
T PRK02106 247 TARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEV-YIQYECKQPVSLYPALKWWN-KP 324 (560)
T ss_pred EEEeeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccc-eEEEEeCCCcccccccchhh-hh
Confidence 66666899999999999999999999999999999999999999 99999999997 67888776533211 0110 11
Q ss_pred HHHHHHHh--ccCC-cccCCccceEEEEecCCCCCCCCCCCeeEEeecccchhhhhccchhhhhhcCCChhhHHhhhccc
Q psy10349 311 AKETIKAF--TNQG-WTTTLGCEGLGYVRTKYNNYPPGVPDIEYIFVPASLAIEEEKGGSLLRKTMGIPDRTFKELFRDV 387 (517)
Q Consensus 311 ~~~~~~~~--~~~G-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (517)
....+| .++| ++ .......+|.+... ....|++++.+.+..+.. .+ . ..
T Consensus 325 --~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~~~----~~--------~----------~~ 376 (560)
T PRK02106 325 --KIGAEWLFTGTGLGA-SNHFEAGGFIRSRA---GVDWPNIQYHFLPVAIRY----DG--------S----------NA 376 (560)
T ss_pred --HHHHHHHhcCCCCcc-ccccceeeEEecCC---CCCCCCeEEEEeeccccc----cC--------C----------CC
Confidence 122344 4566 44 22334445654321 112366655433321100 00 0 00
Q ss_pred CCCCeEEEeeeccccCceeEEEccCCCCCCCceEecCCCCChhhHHHHHHHHHHHHHHhcCchhhhhhhccccccCCCCc
Q psy10349 388 KNKDAWSIWPMLMYPESRGYVRLKSADPMVYPAVQSNFFQDPLDLLRIVEGIKMVIELSKTNAFQKYKSKLSTRILPACK 467 (517)
Q Consensus 388 ~~~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~ 467 (517)
.....+++...+++|+|||+|+|+++||++.|+|+++|+.+|.|++.++++++++++++++.+++.+...+ ..|++
T Consensus 377 ~~~~~~~~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~p~~- 452 (560)
T PRK02106 377 VKGHGFQAHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGRE---ISPGA- 452 (560)
T ss_pred CCCCeEEEEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccccc---cCCCc-
Confidence 01234666667889999999999999999999999999999999999999999999999998887765432 24543
Q ss_pred CCCCCCHHHHHHHHHhcCCCCcccccccccccCCCCCCccCCCCeeeccC
Q psy10349 468 KHKYGSDDYWGCCVRQLTMQMHHQCGTCKMGPDGDRTAVVDPRLRVHGIK 517 (517)
Q Consensus 468 ~~~~~s~~~~~~~i~~~~~~~~H~~GTcrMG~~~d~~~VVD~~lrV~Gv~ 517 (517)
...++++|++||++...+.+|++||||||+ |++||||++|||||++
T Consensus 453 --~~~~~~~~~~~i~~~~~~~~H~~GTcrMG~--d~~sVVD~~~rV~Gv~ 498 (560)
T PRK02106 453 --DVQTDEEIDAFVREHAETAYHPSCTCKMGT--DPMAVVDPEGRVHGVE 498 (560)
T ss_pred --ccCCHHHHHHHHHhccCcCcccCCCeecCC--CCCeeECCCCEEeccC
Confidence 246889999999999989999999999996 4579999999999985
No 4
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-71 Score=591.02 Aligned_cols=470 Identities=36% Similarity=0.619 Sum_probs=374.4
Q ss_pred CchhccccccCCCCeEEEEcccCCCCC-CcccccccccccCC-CccceEeeeeccCcccCCCCceeeccCCcccchhhhh
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEENA-LTDIPETAHYLQFT-KFNWNFTTEFQPGACRGLNNERCPWPAGRAVGGASVI 78 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~~~-~~~~p~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~ 78 (517)
||++|+|||+ ++++|||||+|+.... ..++|..+..++.. .++|.|.++++. .+.++.+.|+|||+|||||+|
T Consensus 19 G~~lA~rLs~-~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~----~~~~r~~~~~rgk~lGGsS~i 93 (542)
T COG2303 19 GSVLAARLSD-AGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEP----HLRGRELAWPRGKVLGGSSSI 93 (542)
T ss_pred hHHHHHHhcC-CCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCccc----CCCCccccccccCcccchhhh
Confidence 7999999995 9999999999987543 55677665554444 789999999988 788999999999999999999
Q ss_pred cceeeecCChhhHHHHHHh-CCCCCCccchHHHHHhhccCCCCCCCC-CCcccCCCceEeecCCCCChhHHHHHHHHHHc
Q psy10349 79 NNNIYTRGNPNDFDRWLEA-GNVGWGYKDVLPYFKKSEDIDVPELKR-SEYHGVGGYLNVDYSPYKSKLMDAFLESAPEV 156 (517)
Q Consensus 79 n~~~~~r~~~~df~~w~~~-g~~~W~~~~l~py~~~~e~~~~~~~~~-~~~~g~~g~~~~~~~~~~~~~~~~~~~a~~~~ 156 (517)
|+|+|+|+.+.||+.|+.. |+++|.|+||+|||+++|++.+....+ ...||..||+.+..+....++.+.|.++++++
T Consensus 94 ng~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~~~~~~a~~~a~~~~ 173 (542)
T COG2303 94 NGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPIARAFIEAGEQL 173 (542)
T ss_pred ccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCchHHHHHHHHHHHHc
Confidence 9999999999999999886 789999999999999999988764332 34799999999987756688999999999999
Q ss_pred CCCC-CCCCCCCCCcccccccccccCCcccchhhhhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCe--EE
Q psy10349 157 GLNL-TDYNSPDGNVGFSRIQGTIQFGRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNK--KR 233 (517)
Q Consensus 157 G~~~-~d~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~--~~ 233 (517)
|++. .++|+.. ..|++.+..++.+|.|+++..+||.++++++|++|++++.|+||+++ +++++||++...+. ..
T Consensus 174 G~~~~~~~~~~~-~~g~g~~~~~~~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~--~~r~~gv~~~~~~~~~~~ 250 (542)
T COG2303 174 GFPTTPDPNGAD-QEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLE--GDRAVGVEVEIGDGGTIE 250 (542)
T ss_pred CCCcCcccccCC-CCCcccceeeccCCeEeechhhcchhHhcCCceEEecCCEEEEEEEE--CCeeEEEEEEeCCCCceE
Confidence 9998 6889888 77888888887799999999999999999999999999999999999 67999999986332 35
Q ss_pred EEEecceEEEecCCcCcHHHHHHcCCCChhhhhhCCCCeeeeCc-cccccccCcCCcceEEEEccccccchhhhhhhHHH
Q psy10349 234 VVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADLQ-VGENLQEHPAFASLAFTVNQKVGLVSDRIFSNLAK 312 (517)
Q Consensus 234 ~v~a~keVIlaaGai~tp~lLl~SGIGp~~~L~~~GI~~~~dlp-VG~nl~dH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (517)
...+.++||||||+|+||+|||+||||+++.|..+||+++.++| ||+|||||+.+ .+.+..+.............. .
T Consensus 251 ~~~a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~-~~~~~~~~~~~~~~~~~~~~~-~ 328 (542)
T COG2303 251 TAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEI-YVAFEATEPTNDSVLSLFSKL-G 328 (542)
T ss_pred EEecCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhh-hhheeccCccccccccccccc-c
Confidence 55566899999999999999999999999999999999999999 99999999997 677766554310000000000 0
Q ss_pred HHHHHh--ccCC-cccCCccceEEEEecCCCCCCCCCCCeeEEeecccchhhhhccchhhhhhcCCChhhHHhhhcccCC
Q psy10349 313 ETIKAF--TNQG-WTTTLGCEGLGYVRTKYNNYPPGVPDIEYIFVPASLAIEEEKGGSLLRKTMGIPDRTFKELFRDVKN 389 (517)
Q Consensus 313 ~~~~~~--~~~G-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (517)
....+| .++| .. ...... +|..+.. ....|++++++....... + ....
T Consensus 329 ~~~~~~~~~~~G~~~-~~~~~~-gf~~~~~---~~~~p~~~~~~~~~~~~~-----------------------~-~~~~ 379 (542)
T COG2303 329 IGADRYLLTRDGPGA-TNHFEG-GFVRSGP---AGEYPDGQYHFAPLPLAI-----------------------R-AAGA 379 (542)
T ss_pred ccceeEEeecCCCcc-cccccc-cccccCc---cccCCCcccccccccccc-----------------------c-cccc
Confidence 111234 3555 43 222222 2544331 123466666554322110 0 0112
Q ss_pred CCeEEEeeeccccCceeEEEccCCCCCCCceEecCCCCChhhHHHHHHHHHHHHHHhcCchhhhhhhccccccCCCCcCC
Q psy10349 390 KDAWSIWPMLMYPESRGYVRLKSADPMVYPAVQSNFFQDPLDLLRIVEGIKMVIELSKTNAFQKYKSKLSTRILPACKKH 469 (517)
Q Consensus 390 ~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~ 469 (517)
...+++.....+|.|+|.|++++.||...|.|+++|++++.|++.+.++++..++++.+..+......+ ..|+.
T Consensus 380 ~~~~~~~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e---~~~~~--- 453 (542)
T COG2303 380 EHGFTLHVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAE---LAPGP--- 453 (542)
T ss_pred CCccEEeeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHh---hcCCC---
Confidence 356777778899999999999999999999999999999999999999999999999977666655433 24543
Q ss_pred CCCCHHHHHHHHHhcCCCCcccccccccccCCCCC-CccCCCCeeeccC
Q psy10349 470 KYGSDDYWGCCVRQLTMQMHHQCGTCKMGPDGDRT-AVVDPRLRVHGIK 517 (517)
Q Consensus 470 ~~~s~~~~~~~i~~~~~~~~H~~GTcrMG~~~d~~-~VVD~~lrV~Gv~ 517 (517)
...+++++.+|++....+.+|++|||||| .|+. +|+|++|||||++
T Consensus 454 ~~~~~~~~~~~~~~~~~t~~H~~GT~rMG--~Dp~~~V~d~~lrv~g~~ 500 (542)
T COG2303 454 RVTTDEDISAAIRFLARTAYHPMGTCRMG--SDPAAVVDDPYLRVHGLE 500 (542)
T ss_pred ccccHHHHHHHHHhccCccccccccccCC--CCchhhccccccccccCC
Confidence 35678899999999999999999999999 4564 5555999999985
No 5
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=4.3e-67 Score=560.52 Aligned_cols=449 Identities=24% Similarity=0.374 Sum_probs=304.9
Q ss_pred CchhccccccCCCCeEEEEcccCCCCCCcccccccccccCCCccceEeeeeccCcccCCCCceeeccCCcccchhhhhcc
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEENALTDIPETAHYLQFTKFNWNFTTEFQPGACRGLNNERCPWPAGRAVGGASVINN 80 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~n~ 80 (517)
||++|.|||| +.+|||||+|+.......+.... .+....++|.|.+.+|. ...++.+.++|||+|||||+||+
T Consensus 67 G~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~~~-~~~~~~~d~~~~~~~q~----~~~~~~~~~~rGr~LGGsS~iN~ 139 (587)
T PLN02785 67 GCPLAATLSQ--NFSVLLLERGGVPFGNANVSFLE-NFHIGLADTSPTSASQA----FISTDGVINARARVLGGGTCINA 139 (587)
T ss_pred HHHHHHHHhc--CCcEEEEecCCCCCCCchhhhHH-hhCCcccccCCcccccc----ccCCCceeccccceecchhhhcC
Confidence 7999999999 48999999998542111121111 12234578999988886 45567789999999999999999
Q ss_pred eeeecCChhhHHHHHHhCCCCCCccchHHHHHhhccCCCCCCCCCCcccCCCceEeecCCCCChhHHHHHHHHHHcCCCC
Q psy10349 81 NIYTRGNPNDFDRWLEAGNVGWGYKDVLPYFKKSEDIDVPELKRSEYHGVGGYLNVDYSPYKSKLMDAFLESAPEVGLNL 160 (517)
Q Consensus 81 ~~~~r~~~~df~~w~~~g~~~W~~~~l~py~~~~e~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~a~~~~G~~~ 160 (517)
|+|.|++++||+. .+|+|+++.|||+++|+.+.. .+...+....|.++++++|++.
T Consensus 140 ~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~~------------------~~~~~~~~~~~~~a~~e~G~~~ 195 (587)
T PLN02785 140 GFYSRASTRFIQK------AGWDAKLVNESYPWVERQIVH------------------WPKVAPWQAALRDSLLEVGVSP 195 (587)
T ss_pred eEEEeCCHHHhcc------CCCCcccccchHHHHhccccc------------------CCCcChHHHHHHHHHHHcCCCc
Confidence 9999999999963 589999999999999986321 0123567889999999999974
Q ss_pred CCCCCCC--CCcccccccccc--cCCcccchhhhhhcccCCCCCeEEEcCcEEEEEEecCCC--CeEEEEEEEe-CCeEE
Q psy10349 161 TDYNSPD--GNVGFSRIQGTI--QFGRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNT--KRVFGVEFMK-NNKKR 233 (517)
Q Consensus 161 ~d~~~~~--~~~g~~~~~~~~--~~g~r~s~~~~~l~~~~~~~nl~i~~~~~V~ri~~~~~~--~~a~gV~~~~-~g~~~ 233 (517)
+|+.. ...|. .+..++ ..|.|++++. ++ +..+++||+|+++++|+||++++.+ ++|+||+|.+ +|+.+
T Consensus 196 --~n~~~~d~~~G~-~~g~~i~~~~g~R~saa~-l~-~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~ 270 (587)
T PLN02785 196 --FNGFTYDHVYGT-KVGGTIFDEFGRRHTAAE-LL-AAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQH 270 (587)
T ss_pred --cCCCCCCCccce-eeeEEEeCCCCEEcCHHH-HH-hhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceE
Confidence 23211 01111 112233 4589998876 55 5677899999999999999998532 4899999985 56655
Q ss_pred EE----EecceEEEecCCcCcHHHHHHcCCCChhhhhhCCCCeeeeCc-cccccccCcCCcceEEEEccccccchhhhhh
Q psy10349 234 VV----YAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADLQ-VGENLQEHPAFASLAFTVNQKVGLVSDRIFS 308 (517)
Q Consensus 234 ~v----~a~keVIlaaGai~tp~lLl~SGIGp~~~L~~~GI~~~~dlp-VG~nl~dH~~~~~~~~~~~~~~~~~~~~~~~ 308 (517)
++ +++||||||||+|+||+|||+|||||+++|+++||++++|+| ||+|||||+.. .+.+..+.+... .+.
T Consensus 271 ~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~-~i~~~~~~~~~~---~~~- 345 (587)
T PLN02785 271 QAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMN-SIFVPSKAPVEQ---SLI- 345 (587)
T ss_pred EEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCccc-ceEEEeCCCchh---hhH-
Confidence 44 256899999999999999999999999999999999999999 99999999997 677766543210 110
Q ss_pred hHHHHHHHHhccCC-cccCCccceEEEEecCCCCCCCCCCCeeEEeec-ccchhhhhccchhhhhhcCCChhhHHhhhcc
Q psy10349 309 NLAKETIKAFTNQG-WTTTLGCEGLGYVRTKYNNYPPGVPDIEYIFVP-ASLAIEEEKGGSLLRKTMGIPDRTFKELFRD 386 (517)
Q Consensus 309 ~~~~~~~~~~~~~G-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (517)
. .......| +... . .+|........ ...+.+...... ...+. .......+.....-... . +
T Consensus 346 ----~-~~~~~~~g~~~~~-~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~-~ 408 (587)
T PLN02785 346 ----Q-TVGITKMGVYIEA-S---SGFGQSPDSIH-CHHGIMSAEIGQLSTIPP-KQRTPEAIQAYIHRKKN-----L-P 408 (587)
T ss_pred ----h-hhhhhccccceec-c---cccccCchhhh-hhccccccccccccccCc-ccccchhhhhhccCccc-----c-c
Confidence 0 00001223 2100 0 01100000000 000000000000 00000 00000000000000000 0 0
Q ss_pred cCCCCeEEEeeeccccCceeEEEccCCCCCCCceEecCCCCChhhHHHHHHHHHHHHHHhcCchhhhhhhccccc-----
Q psy10349 387 VKNKDAWSIWPMLMYPESRGYVRLKSADPMVYPAVQSNFFQDPLDLLRIVEGIKMVIELSKTNAFQKYKSKLSTR----- 461 (517)
Q Consensus 387 ~~~~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----- 461 (517)
........+...+++|+|||+|+|.|+||.+.|.|++||++||.|++.++++++.+++++++++++.+...+..+
T Consensus 409 ~~~~~~~~~~~~l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~ 488 (587)
T PLN02785 409 HEAFNGGFILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVL 488 (587)
T ss_pred ccccccceEEEEecCCCcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhcccccccccccc
Confidence 000011123456789999999999999999999999999999999999999999999999999888775321100
Q ss_pred ---------cCCCCcCCCCCCHHHHHHHHHhcCCCCcccccccccccCCCCCCccCCCCeeeccC
Q psy10349 462 ---------ILPACKKHKYGSDDYWGCCVRQLTMQMHHQCGTCKMGPDGDRTAVVDPRLRVHGIK 517 (517)
Q Consensus 462 ---------~~p~~~~~~~~s~~~~~~~i~~~~~~~~H~~GTcrMG~~~d~~~VVD~~lrV~Gv~ 517 (517)
..|+ ...++++|++|+|+...+.||++|||+|| +|||+++|||||+
T Consensus 489 ~~~~~~~~~~~p~----~~~~d~~l~~~ir~~~~t~~H~~GTc~MG------~VVD~~lrV~GV~ 543 (587)
T PLN02785 489 NMSVKANINLIPK----HTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVDQNYKVLGVS 543 (587)
T ss_pred ccccccccccCCC----CCCCHHHHHHHHHHhcccccCCcccccCC------CeECCCCeEeccC
Confidence 0121 13578899999999999999999999999 6999999999986
No 6
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=2.8e-56 Score=444.72 Aligned_cols=278 Identities=40% Similarity=0.723 Sum_probs=225.1
Q ss_pred CchhccccccCCCCeEEEEcccCCCCCCccccc-ccccccCCCccceEeeeeccCcccCCCCceeeccCCcccchhhhhc
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEENALTDIPE-TAHYLQFTKFNWNFTTEFQPGACRGLNNERCPWPAGRAVGGASVIN 79 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~~~~~~~p~-~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~n 79 (517)
||++|.||||+++++|||||+|++.......+. .........++|.+.+.++. ..+++.+.+++|++|||||+||
T Consensus 12 G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~G~~lGGsS~in 87 (296)
T PF00732_consen 12 GSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQP----FLNGRTINWPRGKGLGGSSAIN 87 (296)
T ss_dssp HHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEE----CTTTTSEEEEEB-STTGGGGTS
T ss_pred HHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCccccccccccccc----ccccceeeeecceecCCccccc
Confidence 789999999965689999999998764332222 12223346688999988887 6778888899999999999999
Q ss_pred ceeeecCChhhHHHHHHh-CCCCCCccchHHHHHhhccCCCCCCCCCCcccCCCceEe-ecCCCCChhHHHHHHHHHHcC
Q psy10349 80 NNIYTRGNPNDFDRWLEA-GNVGWGYKDVLPYFKKSEDIDVPELKRSEYHGVGGYLNV-DYSPYKSKLMDAFLESAPEVG 157 (517)
Q Consensus 80 ~~~~~r~~~~df~~w~~~-g~~~W~~~~l~py~~~~e~~~~~~~~~~~~~g~~g~~~~-~~~~~~~~~~~~~~~a~~~~G 157 (517)
+|+++|+++.||+.|... |.++|+|++|+|||+++|++..+ ....|+.++++++ ..+.+..+....|.++++++|
T Consensus 88 ~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~---~~~~~g~~~~~~v~~~~~~~~~~~~~~~~a~~~~G 164 (296)
T PF00732_consen 88 GGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGP---SSDLHGVDGPLPVSSSPPYPSPMNQALMDAAEELG 164 (296)
T ss_dssp --BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTT---BGGGSCBSSSEEEHHHCSCHCTHHHHHHHHHHHTT
T ss_pred ccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhccc---cccccccccccccccccCCCCHHHHHHHHHHHHcC
Confidence 999999999999999987 78889999999999999999877 3667899999998 455566788899999999999
Q ss_pred CCC-CCCCCCCCCcccccccccccCCcccchhhhhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeC-Ce-EEE
Q psy10349 158 LNL-TDYNSPDGNVGFSRIQGTIQFGRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKN-NK-KRV 234 (517)
Q Consensus 158 ~~~-~d~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~-g~-~~~ 234 (517)
++. .+++... ..|++.+...|++|+|+|+..+||.++.+++|++|+++|+|+||+++.++++|+||+|.+. +. ...
T Consensus 165 ~~~~~~~~~~~-~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~ 243 (296)
T PF00732_consen 165 IPVPQDFNGCD-PCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRR 243 (296)
T ss_dssp HHBCSCTTSST-CSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEE
T ss_pred Ccccccccccc-ccccccccccccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceee
Confidence 995 5666655 5565555556999999999999999999999999999999999999766789999999963 33 344
Q ss_pred EEecceEEEecCCcCcHHHHHHcCCCChhhhhhCCCCeeeeCccccccccCc
Q psy10349 235 VYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADLQVGENLQEHP 286 (517)
Q Consensus 235 v~a~keVIlaaGai~tp~lLl~SGIGp~~~L~~~GI~~~~dlpVG~nl~dH~ 286 (517)
+.++|+||||||||+||+|||+|||||+++|+++||++++||||||||||||
T Consensus 244 ~~~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lpVG~nl~dH~ 295 (296)
T PF00732_consen 244 IVAAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLPVGRNLQDHP 295 (296)
T ss_dssp EEEEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-TTTECEB--E
T ss_pred eccceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCcchhchhccc
Confidence 5555899999999999999999999999999999999999999999999997
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=5.4e-41 Score=352.54 Aligned_cols=373 Identities=13% Similarity=0.114 Sum_probs=225.5
Q ss_pred cCCcccchhhhhcceeeecCChhhHHHHHHhCCCCC--CccchHHHHHhhccCCCCCCCCCCcccCCCceEeecCCCCCh
Q psy10349 67 PAGRAVGGASVINNNIYTRGNPNDFDRWLEAGNVGW--GYKDVLPYFKKSEDIDVPELKRSEYHGVGGYLNVDYSPYKSK 144 (517)
Q Consensus 67 ~~g~~lGGsS~~n~~~~~r~~~~df~~w~~~g~~~W--~~~~l~py~~~~e~~~~~~~~~~~~~g~~g~~~~~~~~~~~~ 144 (517)
.|-+.|||+|.||++.+.|++|.+- .| . ..+| +|+||+|||+++|++++++. .. ...+.....
T Consensus 112 ar~R~vGGsS~hW~g~~~R~~p~~r-~g--~-~~dWPI~y~eL~PyY~~Ae~~~gv~g----------~~-~~~~~~~~~ 176 (544)
T TIGR02462 112 AVTRGVGGMSTHWTCATPRFHREER-PK--L-SDDAAEDDAEWDRLYTKAESLIGTST----------DQ-FDESIRHNL 176 (544)
T ss_pred heeeccCchhhhcCcccCCCCHHhc-cC--C-CCCCCCCHHHHHHHHHHHHHHhCCCC----------Cc-CCCcccchh
Confidence 4668999999999999999999642 12 1 3689 99999999999999988742 10 000011122
Q ss_pred hHHHHHHHHHHcCC-CCCCCCCCCCCcccccccccccCCcccchhhhhhcccC----CCCCeEEEcCcEEEEEEecCCC-
Q psy10349 145 LMDAFLESAPEVGL-NLTDYNSPDGNVGFSRIQGTIQFGRRFSASQAFLRPIV----ERPNFHVMKKARVLKVLIDPNT- 218 (517)
Q Consensus 145 ~~~~~~~a~~~~G~-~~~d~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~----~~~nl~i~~~~~V~ri~~~~~~- 218 (517)
..+.+.++++ |+ ... .. ...|..+ .|..+.|+|+..+.+..+. +++|++|++++.|+||++++++
T Consensus 177 ~~~~~~~~~~--g~~~~~--~~---PlA~~~~--~c~~~ak~s~~~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~ 247 (544)
T TIGR02462 177 VLRKLQDEYK--GQRDFQ--PL---PLACHRR--TDPTYVEWHSADTVFDLQPNDDAPSERFTLLTNHRCTRLVRNETNE 247 (544)
T ss_pred HHHHHHHHhc--cccccc--cC---chhhhcc--CCCccceecCCccchhhhhhhhccCCCEEEEcCCEEEEEEeCCCCC
Confidence 2333333332 33 110 00 1112111 4566788887656665544 4889999999999999998654
Q ss_pred CeEEEEEEEe--CCeEEEEEecceEEEecCCcCcHHHHHHcCCCChhhhhhCCCCeeeeCc-cccccccCcCCcceEEEE
Q psy10349 219 KRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADLQ-VGENLQEHPAFASLAFTV 295 (517)
Q Consensus 219 ~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~tp~lLl~SGIGp~~~L~~~GI~~~~dlp-VG~nl~dH~~~~~~~~~~ 295 (517)
++|++|+|.+ +|+.++++|+ .||||||+|+||||||+|+++... .+.|+.+...++ ||||||||+.. .+...+
T Consensus 248 ~~v~~v~~~d~~~g~~~~v~A~-~vVLAagaIetpRLLL~S~~~~~~--~p~gl~Nss~~g~VGRnlmdh~~~-~~~~~~ 323 (544)
T TIGR02462 248 SEIEAALVRDLLSGDRFEIKAD-VYVLACGAVHNPQILVNSGFGQLG--RPDPTNPPPLLPSLGRYITEQSMT-FCQIVL 323 (544)
T ss_pred ceeEEEEEEECCCCcEEEEECC-EEEEccCchhhHHHHHhCCCCCCc--CCCCcCCCCCCCCCCcchhcCCCc-cEEEEe
Confidence 6899999986 6888999995 799999999999999999998543 356777754235 99999999986 566665
Q ss_pred ccccccchhhhhhhHHHHHHHHh--c-----cCCcccCCccceEEEEecCCCCCCCCCCCeeEEeecccchhhhhccchh
Q psy10349 296 NQKVGLVSDRIFSNLAKETIKAF--T-----NQGWTTTLGCEGLGYVRTKYNNYPPGVPDIEYIFVPASLAIEEEKGGSL 368 (517)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~--~-----~~G~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~ 368 (517)
+++.. ..+. .. .....| . ..++. .......|.. ..|... .+..... .|+..
T Consensus 324 ~~~~~---~~~~-~~--~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~--------~~~~~~---~~~~~~~---~w~~~ 381 (544)
T TIGR02462 324 STELV---DSVR-SD--PRGLDWWKEKVANHMMKHP--EDPLPIPFRD--------PEPQVT---TPFTEEH---PWHTQ 381 (544)
T ss_pred cchhh---hhcc-CC--ccccccccccchhhhcccc--CCcccccccc--------cCcccc---ccccccc---ccchh
Confidence 54321 0000 00 000001 0 00000 0000000000 000000 0000000 01111
Q ss_pred hhh-hcCCChhhHHhhhcccCCCCeEEE-eeeccccCceeEEEccC--CCCCCCceEecCCCCChhhHHHHHHHHHHHHH
Q psy10349 369 LRK-TMGIPDRTFKELFRDVKNKDAWSI-WPMLMYPESRGYVRLKS--ADPMVYPAVQSNFFQDPLDLLRIVEGIKMVIE 444 (517)
Q Consensus 369 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~P~srG~V~L~s--~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~ 444 (517)
+.. .+. +............+.+ +..++.|...++|+|++ +|.+|+|++.++|-.++.|++.+.++++.+.+
T Consensus 382 ~~~~~~~-----~g~~~~~~~~~~~v~l~~~~e~lP~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~~~~~~ 456 (544)
T TIGR02462 382 IHRDAFS-----YGAVGPSIDSRVIVDLRFFGRTEPKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRMMTDMCN 456 (544)
T ss_pred hhhhhhh-----cccccccccccceeeEEEEeccCCCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 100 000 0000000000111222 34567899999999985 69999999999999999999999999999999
Q ss_pred HhcCchhhhhhhccccccCCCCcCCCCCCHHHHHHHHHhcCCCCcccccccccccCCCCCCccCCCCeeeccC
Q psy10349 445 LSKTNAFQKYKSKLSTRILPACKKHKYGSDDYWGCCVRQLTMQMHHQCGTCKMGPDGDRTAVVDPRLRVHGIK 517 (517)
Q Consensus 445 i~~~~~~~~~~~~~~~~~~p~~~~~~~~s~~~~~~~i~~~~~~~~H~~GTcrMG~~~d~~~VVD~~lrV~Gv~ 517 (517)
+++. ++... +.. ... + .....++|++||||||.++ .+||||++|||||++
T Consensus 457 i~~~-----~G~~~-----~~~-------~~~---~--~~~~~~~H~~Gt~rMG~dp-~~sVvd~~~rv~g~~ 506 (544)
T TIGR02462 457 VAAK-----IGGYL-----PGS-------LPQ---F--MEPGLALHLAGTTRIGFDE-QTTVANTDSKVHNFK 506 (544)
T ss_pred HHHH-----cCCCc-----ccc-------ccc---c--cCCCccccCCCCeecCCCC-CCceECCCCcEeCCC
Confidence 8765 33211 110 000 0 0123578999999999643 479999999999975
No 8
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=99.89 E-value=4.4e-23 Score=183.01 Aligned_cols=114 Identities=39% Similarity=0.679 Sum_probs=90.1
Q ss_pred cCceeEEEccCCCCCCCceEecCCCCChhhHHHHHHHHHHHHHHhcCchhhhhhhcccc-ccCCCCcCCCCCCHHHHHHH
Q psy10349 402 PESRGYVRLKSADPMVYPAVQSNFFQDPLDLLRIVEGIKMVIELSKTNAFQKYKSKLST-RILPACKKHKYGSDDYWGCC 480 (517)
Q Consensus 402 P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~~s~~~~~~~ 480 (517)
|+|||+|+|+++||++.|.|+++|+.++.|++.++++++.+++++++. +++++..... ...+.+......++++|++|
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLECY 79 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccccccccccccccccchhhhhh
Confidence 899999999999999999999999999999999999999999999998 7776543221 11122223346688999999
Q ss_pred HHhcCCCCcccccccccccCCCCCCccCCCCeeeccC
Q psy10349 481 VRQLTMQMHHQCGTCKMGPDGDRTAVVDPRLRVHGIK 517 (517)
Q Consensus 481 i~~~~~~~~H~~GTcrMG~~~d~~~VVD~~lrV~Gv~ 517 (517)
+++...+.+|++||||||++++. +|||++|||||++
T Consensus 80 ~~~~~~~~~H~~Gt~~mG~~~~~-~VvD~~~rv~g~~ 115 (144)
T PF05199_consen 80 IRQNVGTSWHPSGTCRMGPDPDT-SVVDPDLRVHGVR 115 (144)
T ss_dssp HHHHGEECSS-BETT-BTSSTTT-TSB-TTSBBTTSB
T ss_pred eeeccceecccccceeccccCCc-eeECCCCCeeeee
Confidence 99999999999999999987765 9999999999985
No 9
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.39 E-value=3.1e-06 Score=90.83 Aligned_cols=64 Identities=23% Similarity=0.436 Sum_probs=51.8
Q ss_pred hhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCc-HHHHH
Q psy10349 190 AFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFS-PHLLL 255 (517)
Q Consensus 190 ~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~t-p~lLl 255 (517)
.++..+.++++++|++++.|++|+.+ +++++||.+..+++..+|+|+|.||||+|.++. +.++.
T Consensus 178 ~l~~~~~~~~gv~i~~~t~~~~Li~~--~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~~m~~ 242 (513)
T PRK12837 178 RFLAALARFPNARLRLNTPLVELVVE--DGRVVGAVVERGGERRRVRARRGVLLAAGGFEQNDDMRA 242 (513)
T ss_pred HHHHHHHhCCCCEEEeCCEEEEEEec--CCEEEEEEEEECCcEEEEEeCceEEEeCCCccCCHHHHH
Confidence 34544455679999999999999987 579999998778888999998889999999964 44443
No 10
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.35 E-value=4.7e-06 Score=90.65 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=51.9
Q ss_pred hcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCc-HHHHH
Q psy10349 192 LRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFS-PHLLL 255 (517)
Q Consensus 192 l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~t-p~lLl 255 (517)
|....+..|++|++++.|++|+.+++ ++|+||.+..+++.++++|+|.||||+|.+.. +.+|.
T Consensus 219 l~~~~~~~gv~i~~~~~~~~Li~d~~-g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 219 LRLALKDAGVPLWLDSPMTELITDPD-GAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred HHHHHHhCCceEEeCCEEEEEEECCC-CcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHH
Confidence 44445678999999999999998753 68999999878888899998789999999985 55444
No 11
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.28 E-value=2.6e-06 Score=92.18 Aligned_cols=54 Identities=17% Similarity=0.392 Sum_probs=47.4
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcH
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSP 251 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp 251 (517)
.++.+++|++++.|++|+.+ +++++||++..+++.+.++|+|.||||+|.+..-
T Consensus 218 ~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N 271 (557)
T PRK12844 218 ALAAGVPLWTNTPLTELIVE--DGRVVGVVVVRDGREVLIRARRGVLLASGGFGHN 271 (557)
T ss_pred HHhCCCEEEeCCEEEEEEEe--CCEEEEEEEEECCeEEEEEecceEEEecCCccCC
Confidence 45679999999999999987 4799999998788888999977899999999874
No 12
>PRK07121 hypothetical protein; Validated
Probab=98.24 E-value=1.4e-05 Score=85.62 Aligned_cols=61 Identities=25% Similarity=0.375 Sum_probs=48.8
Q ss_pred ccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCc-HHHHH
Q psy10349 194 PIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFS-PHLLL 255 (517)
Q Consensus 194 ~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~t-p~lLl 255 (517)
...++.+++|++++.|++|+.++ +++++||++..+++..+++|+|.||||+|.+.. +.++.
T Consensus 185 ~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 185 KRAAALGVQIRYDTRATRLIVDD-DGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred HHHHhCCCEEEeCCEEEEEEECC-CCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence 33456789999999999999874 368999999877777889997789999998875 44433
No 13
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.15 E-value=2.2e-05 Score=84.98 Aligned_cols=55 Identities=25% Similarity=0.343 Sum_probs=46.9
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHH
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPH 252 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~ 252 (517)
..+.+++|++++.|++|+.+ +++++||.+..+++.+.++|+|.||||+|.+....
T Consensus 227 ~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~ 281 (564)
T PRK12845 227 VLRAGIPIWTETSLVRLTDD--GGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDM 281 (564)
T ss_pred HHHCCCEEEecCEeeEEEec--CCEEEEEEEEECCcEEEEEcCCEEEEecCCccccH
Confidence 34578999999999999865 47999998877787888999889999999998654
No 14
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.14 E-value=1e-05 Score=84.66 Aligned_cols=55 Identities=27% Similarity=0.351 Sum_probs=43.6
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEE--eCCeEEEEEecceEEEecCCcCcHHHHH
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFM--KNNKKRVVYAKKEVVLSAGAFFSPHLLL 255 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~--~~g~~~~v~a~keVIlaaGai~tp~lLl 255 (517)
++.+++|+.++.|++|+.+ +++|+||++. .+++.++|+|+ .||||+|.+.. .++.
T Consensus 152 ~~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~-~~~~ 208 (417)
T PF00890_consen 152 EEAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKAK-AVILATGGFGG-ELLR 208 (417)
T ss_dssp HHTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEES-EEEE----BGG-HHHH
T ss_pred hhcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEeee-EEEeccCcccc-cccc
Confidence 3446999999999999998 4699999999 68999999996 89999999999 4443
No 15
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.08 E-value=2.4e-05 Score=83.09 Aligned_cols=63 Identities=29% Similarity=0.293 Sum_probs=51.5
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEE-eCCeEEEEEecceEEEecCCcCcHHHHHHcCCCC
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFM-KNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGP 261 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~-~~g~~~~v~a~keVIlaaGai~tp~lLl~SGIGp 261 (517)
.++.+++|+.++.|++|+.+ +++++||.+. .+++...++| |.||||+|.+...+.|+.+-.|+
T Consensus 141 ~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a-~~VIlAtGg~~~n~~~~~~~~~~ 204 (466)
T PRK08274 141 AERLGVEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRA-KAVVLAAGGFESNREWLREAWGQ 204 (466)
T ss_pred HHHCCCEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEEC-CEEEECCCCCCCCHHHHHhhcCC
Confidence 35668999999999999886 4689999985 4666778888 57999999999988888765544
No 16
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.87 E-value=6.4e-05 Score=79.24 Aligned_cols=55 Identities=24% Similarity=0.266 Sum_probs=43.1
Q ss_pred ccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-CCeEEEEEecceEEEecCCcCc
Q psy10349 194 PIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-NNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 194 ~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-~g~~~~v~a~keVIlaaGai~t 250 (517)
....+.+++|+.++.|++|+.++ +++++||++.. +++...+.+ |.||||+|.+..
T Consensus 138 ~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~~~a-~~VVlAtGg~~~ 193 (439)
T TIGR01813 138 KKAKKEGIDTRLNSKVEDLIQDD-QGTVVGVVVKGKGKGIYIKAA-KAVVLATGGFGS 193 (439)
T ss_pred HHHHHcCCEEEeCCEeeEeEECC-CCcEEEEEEEeCCCeEEEEec-ceEEEecCCCCC
Confidence 33455689999999999999864 36899999875 455556666 689999998876
No 17
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.79 E-value=5.2e-05 Score=77.00 Aligned_cols=56 Identities=36% Similarity=0.520 Sum_probs=41.1
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHcCC
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGI 259 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~SGI 259 (517)
..+.+++|+++++|++|..+ +++++||+..+ | +++| +.||+|+|+ .|++|+..+|+
T Consensus 157 ~~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~~~-g---~i~a-d~vV~a~G~-~s~~l~~~~~~ 212 (358)
T PF01266_consen 157 AQRAGVEIRTGTEVTSIDVD--GGRVTGVRTSD-G---EIRA-DRVVLAAGA-WSPQLLPLLGL 212 (358)
T ss_dssp HHHTT-EEEESEEEEEEEEE--TTEEEEEEETT-E---EEEE-CEEEE--GG-GHHHHHHTTTT
T ss_pred HHHhhhhccccccccchhhc--ccccccccccc-c---cccc-ceeEecccc-cceeeeecccc
Confidence 34558999999999999998 56888887642 2 3788 569999996 78888887753
No 18
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.77 E-value=0.00011 Score=78.69 Aligned_cols=56 Identities=20% Similarity=0.342 Sum_probs=43.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-CCeEEEEEecceEEEecCCcCcH-HHHH
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-NNKKRVVYAKKEVVLSAGAFFSP-HLLL 255 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-~g~~~~v~a~keVIlaaGai~tp-~lLl 255 (517)
+..+++|++++.|++|+.+ +++++||.+.. +++..+++| |.||||+|.+... .+|.
T Consensus 201 ~~~gv~i~~~t~v~~l~~~--~g~V~Gv~~~~~~g~~~~i~a-~~VVlAtGG~~~n~~m~~ 258 (506)
T PRK06481 201 QERKIPLFVNADVTKITEK--DGKVTGVKVKINGKETKTISS-KAVVVTTGGFGANKDMIA 258 (506)
T ss_pred HHcCCeEEeCCeeEEEEec--CCEEEEEEEEeCCCeEEEEec-CeEEEeCCCcccCHHHHH
Confidence 4568999999999999765 47899999874 446678888 5799999987754 4443
No 19
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.73 E-value=0.00028 Score=77.00 Aligned_cols=57 Identities=25% Similarity=0.258 Sum_probs=47.2
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHH
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLL 254 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lL 254 (517)
.++.+++|++++.|++|+.+ +++++||.+..++..++++|+|.||||+|++..-.-+
T Consensus 227 a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~ 283 (581)
T PRK06134 227 AEDLGVRIWESAPARELLRE--DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPHDPAR 283 (581)
T ss_pred HHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEECCcEEEEEeCCEEEEcCCCcccCHHH
Confidence 45668999999999999886 5799999987766667899967899999999865444
No 20
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.71 E-value=0.00033 Score=75.82 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=47.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcCcHHHHHHcCC
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFSPHLLLLSGI 259 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~tp~lLl~SGI 259 (517)
.+.+.+|++++.|+.|..+ +++++||++.+ +++..+|+|+ .||+|||+. +.+|+...|+
T Consensus 160 ~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A~-~VVnAaG~w-a~~l~~~~g~ 220 (546)
T PRK11101 160 KEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHAP-VVVNAAGIW-GQHIAEYADL 220 (546)
T ss_pred HhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEECC-EEEECCChh-HHHHHHhcCC
Confidence 4568999999999999876 56899999864 5666789995 699999975 6777766654
No 21
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.64 E-value=0.00027 Score=74.21 Aligned_cols=57 Identities=19% Similarity=0.454 Sum_probs=45.1
Q ss_pred hhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCc
Q psy10349 191 FLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 191 ~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~t 250 (517)
++..+.++.|++|++++.|++|+.+ +++++||.+..++..++++| |.||||+|.+..
T Consensus 134 L~~~~~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~~~g~~~~i~A-k~VILAtGG~~~ 190 (433)
T PRK06175 134 LLKKVKKRKNITIIENCYLVDIIEN--DNTCIGAICLKDNKQINIYS-KVTILATGGIGG 190 (433)
T ss_pred HHHHHHhcCCCEEEECcEeeeeEec--CCEEEEEEEEECCcEEEEEc-CeEEEccCcccc
Confidence 3333445679999999999999876 46899988776676678899 579999999764
No 22
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.63 E-value=0.00041 Score=75.61 Aligned_cols=56 Identities=21% Similarity=0.354 Sum_probs=47.2
Q ss_pred cCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHH
Q psy10349 195 IVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPH 252 (517)
Q Consensus 195 ~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~ 252 (517)
.+++.+++|++++.|++|+.+ +++++||.+..+++.++++|+|.||||+|.+..-.
T Consensus 230 ~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~ 285 (578)
T PRK12843 230 SLRARGVRILTQTDVESLETD--HGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHP 285 (578)
T ss_pred HHHhCCCEEEeCCEEEEEEee--CCEEEEEEEecCCeEEEEEccceEEECCCCcccCH
Confidence 345678999999999999876 47999999887788888998778999999998743
No 23
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.53 E-value=0.001 Score=72.58 Aligned_cols=58 Identities=19% Similarity=0.313 Sum_probs=46.4
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHH
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLL 255 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl 255 (517)
.++.+++|++++.|++|+.+ +++++||.+...+....++++|.||||+|.+..-.-++
T Consensus 224 ~~~~Gv~i~~~~~v~~l~~~--~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~~ 281 (574)
T PRK12842 224 ALDLGIPILTGTPARELLTE--GGRVVGARVIDAGGERRITARRGVVLACGGFSHDLARI 281 (574)
T ss_pred HHhCCCEEEeCCEEEEEEee--CCEEEEEEEEcCCceEEEEeCCEEEEcCCCccchHHHH
Confidence 35678999999999999987 57999999876455567888778999999987544443
No 24
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.52 E-value=0.0006 Score=71.74 Aligned_cols=57 Identities=16% Similarity=0.077 Sum_probs=42.7
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHH
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLL 255 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl 255 (517)
.++.+++|++++.|++|+.++++++++||....++ .+++| |.||||+|.+...+=++
T Consensus 133 a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~--~~i~a-k~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 133 AERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGT--HRITT-QALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCc--EEEEc-CEEEEcCCCcccCHHHH
Confidence 45668999999999999876324689998764332 56778 57999999987755443
No 25
>PLN02815 L-aspartate oxidase
Probab=97.51 E-value=0.0003 Score=76.60 Aligned_cols=55 Identities=13% Similarity=0.237 Sum_probs=44.3
Q ss_pred cCCCCCeEEEcCcEEEEEEecCCCC--eEEEEEEEe--CCeEEEEEecceEEEecCCcCc
Q psy10349 195 IVERPNFHVMKKARVLKVLIDPNTK--RVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 195 ~~~~~nl~i~~~~~V~ri~~~~~~~--~a~gV~~~~--~g~~~~v~a~keVIlaaGai~t 250 (517)
+.+.+|++|+.++.|++|+.+++++ +++||.+.. +|+...++| |.||||+|.+.-
T Consensus 165 ~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 223 (594)
T PLN02815 165 VKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFIS-KVTLLASGGAGH 223 (594)
T ss_pred HHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEe-ceEEEcCCccee
Confidence 3445799999999999999864444 489999863 677788889 689999998863
No 26
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.49 E-value=0.00076 Score=73.17 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=42.2
Q ss_pred CCCeEEEcCcEEEEEEecCCCCeEEEEEEE--eC-------------CeEEEEEecceEEEecCCcCc-HHHHH
Q psy10349 198 RPNFHVMKKARVLKVLIDPNTKRVFGVEFM--KN-------------NKKRVVYAKKEVVLSAGAFFS-PHLLL 255 (517)
Q Consensus 198 ~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~--~~-------------g~~~~v~a~keVIlaaGai~t-p~lLl 255 (517)
..+++|++++.|++|+.+ +++++||.+. .+ +..++|+| |.||||+|.+.. +.++.
T Consensus 164 ~~gv~i~~~t~~~~Li~~--~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~A-kaVILATGGf~~n~em~~ 234 (549)
T PRK12834 164 RGLVRFRFRHRVDELVVT--DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRA-QAVIVTSGGIGGNHELVR 234 (549)
T ss_pred hCCceEEecCEeeEEEEe--CCEEEEEEEEecccccccccccccccccceEEEec-CEEEEeCCCcccCHHHHH
Confidence 457999999999999986 4799999873 11 23568888 679999999884 44443
No 27
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.47 E-value=0.00041 Score=81.49 Aligned_cols=53 Identities=23% Similarity=0.384 Sum_probs=44.2
Q ss_pred CCCeEEEcCcEEEEEEecCC----C---CeEEEEEEEe----CCeEEEEEecceEEEecCCcCcH
Q psy10349 198 RPNFHVMKKARVLKVLIDPN----T---KRVFGVEFMK----NNKKRVVYAKKEVVLSAGAFFSP 251 (517)
Q Consensus 198 ~~nl~i~~~~~V~ri~~~~~----~---~~a~gV~~~~----~g~~~~v~a~keVIlaaGai~tp 251 (517)
+.+++|++++.|++|+.+++ + ++|+||++.. +|+.+.++| |.||||+|.+..-
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~A-kaVILATGGf~~N 622 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLA-DAVILATGGFSND 622 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEe-ceEEEecCCcccC
Confidence 36899999999999998742 2 3899999984 577788999 6899999999863
No 28
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.46 E-value=0.0011 Score=71.95 Aligned_cols=53 Identities=21% Similarity=0.464 Sum_probs=43.7
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcCc
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~t 250 (517)
..+.+++|++++.|++|+.++ +++++||.+.. ++..+.++| |.||||+|.+..
T Consensus 144 ~~~~gv~i~~~t~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 198 (543)
T PRK06263 144 LIKERIKILEEVMAIKLIVDE-NREVIGAIFLDLRNGEIFPIYA-KATILATGGAGQ 198 (543)
T ss_pred HhcCCCEEEeCeEeeeeEEeC-CcEEEEEEEEECCCCcEEEEEc-CcEEECCCCCCC
Confidence 345799999999999999874 45699998764 677788999 689999999874
No 29
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.46 E-value=0.00061 Score=73.74 Aligned_cols=54 Identities=24% Similarity=0.445 Sum_probs=44.6
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCc
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~t 250 (517)
.+++|++|+.++.|++|+.++++++++||.+..++....++| |.||||+|.+..
T Consensus 145 ~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~A-kaVILATGG~~~ 198 (553)
T PRK07395 145 LQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRA-GAVILATGGGGQ 198 (553)
T ss_pred hhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEc-CEEEEcCCCCcc
Confidence 346799999999999999874337899998877787778888 579999999753
No 30
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.45 E-value=0.0011 Score=72.35 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=44.4
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEE--eCCeEEEEEecceEEEecCCcCc
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFM--KNNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~--~~g~~~~v~a~keVIlaaGai~t 250 (517)
..+.+++|+.++.|++|+.++ +++++||.+. .+|+...++| |.||||+|.+..
T Consensus 153 ~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 207 (588)
T PRK08958 153 NLKNHTTIFSEWYALDLVKNQ-DGAVVGCTAICIETGEVVYFKA-RATVLATGGAGR 207 (588)
T ss_pred hhhcCCEEEeCcEEEEEEECC-CCEEEEEEEEEcCCCcEEEEEc-CeEEECCCCccc
Confidence 345789999999999999864 4799999985 3788888999 689999999875
No 31
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.44 E-value=0.0014 Score=70.60 Aligned_cols=59 Identities=17% Similarity=0.312 Sum_probs=48.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcCcHHHHHHcCC
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFSPHLLLLSGI 259 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~tp~lLl~SGI 259 (517)
.+.+.+|++++.|++|..+ ++++.||++.+ +|+..+|+| +.||+|||+. +.+|+...|+
T Consensus 139 ~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a-~~VVnAaG~w-a~~l~~~~g~ 199 (516)
T TIGR03377 139 QEHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEA-QVVINAAGIW-AGRIAEYAGL 199 (516)
T ss_pred HHcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEc-CEEEECCCcc-hHHHHHhcCC
Confidence 4568999999999999876 56899999864 577788999 4699999965 7788877765
No 32
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.43 E-value=0.0014 Score=71.26 Aligned_cols=50 Identities=24% Similarity=0.271 Sum_probs=42.8
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcC
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFF 249 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~ 249 (517)
.+.+++|+.++.|++|+.+ +++++||.+.. +++.+.++| |.||||+|.+.
T Consensus 147 ~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~ 198 (566)
T PRK06452 147 SGLNVDFYNEWFSLDLVTD--NKKVVGIVAMQMKTLTPFFFKT-KAVVLATGGMG 198 (566)
T ss_pred HhCCCEEEeCcEEEEEEEE--CCEEEEEEEEECCCCeEEEEEe-CeEEECCCccc
Confidence 3458999999999999987 47999999874 567778889 68999999987
No 33
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.43 E-value=0.0016 Score=70.78 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=44.9
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEE--eCCeEEEEEecceEEEecCCcCc
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFM--KNNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~--~~g~~~~v~a~keVIlaaGai~t 250 (517)
..+.+++|+.++.|++|+.++ +++++||.+. .+|+.+.++| |.||||+|.+..
T Consensus 136 ~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 190 (570)
T PRK05675 136 NLKNGTTFLNEWYAVDLVKNQ-DGAVVGVIAICIETGETVYIKS-KATVLATGGAGR 190 (570)
T ss_pred HhccCCEEEECcEEEEEEEcC-CCeEEEEEEEEcCCCcEEEEec-CeEEECCCCccc
Confidence 346789999999999999864 4799999986 3788888999 589999999885
No 34
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.26 E-value=0.001 Score=72.81 Aligned_cols=53 Identities=19% Similarity=0.169 Sum_probs=44.3
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEE--eCCeEEEEEecceEEEecCCcCc
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFM--KNNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~--~~g~~~~v~a~keVIlaaGai~t 250 (517)
..+.+++|++++.|++|+.++ +++++||.+. .+|+.+.+.| |.||||+|.+..
T Consensus 159 ~~~~gi~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 213 (598)
T PRK09078 159 SLKHNAEFFIEYFALDLIMDD-GGVCRGVVAWNLDDGTLHRFRA-HMVVLATGGYGR 213 (598)
T ss_pred HhhcCCEEEEeEEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEc-CEEEECCCCCcc
Confidence 345789999999999999874 3699999885 3778888999 579999999985
No 35
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.26 E-value=0.00095 Score=73.34 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=44.2
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcCcH
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFSP 251 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~tp 251 (517)
.+.+++|+.++.|++|+.++ ++++.||.+.. +|+...++| |.||||+|.+...
T Consensus 198 ~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~~ 252 (635)
T PLN00128 198 MKHNTQFFVEYFALDLIMDS-DGACQGVIALNMEDGTLHRFRA-HSTILATGGYGRA 252 (635)
T ss_pred HhCCCEEEEeeEEEEEEEcC-CCEEEEEEEEEcCCCeEEEEEc-CeEEECCCCCccc
Confidence 35689999999999998864 36899998864 688888999 5799999999753
No 36
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=97.25 E-value=0.0013 Score=71.51 Aligned_cols=54 Identities=19% Similarity=0.184 Sum_probs=45.0
Q ss_pred ccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcCc
Q psy10349 194 PIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 194 ~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~t 250 (517)
....+.+++|+.++.|++|+.+ +++++||.+.. +|+...++| |.||||+|.+..
T Consensus 127 ~~~~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~A-kaVILATGG~~~ 182 (565)
T TIGR01816 127 QQNLKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRA-KAVVLATGGYGR 182 (565)
T ss_pred HHHHhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEe-CeEEECCCCccc
Confidence 3334678999999999999986 47999998853 788889999 689999999875
No 37
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.25 E-value=0.0027 Score=69.53 Aligned_cols=51 Identities=14% Similarity=0.174 Sum_probs=42.6
Q ss_pred CCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcCc
Q psy10349 198 RPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 198 ~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~t 250 (517)
..|++|+.++.|++|+.++ +++++||.+.. +++...++| |.||||+|.+..
T Consensus 145 ~~gV~i~~~t~v~~Li~dd-~grV~GV~~~~~~~g~~~~i~A-kaVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVD-GNRARGIIARNLVTGEIETHSA-DAVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEc-CEEEECCCCCcC
Confidence 4689999999999999864 46899999874 577778888 579999999853
No 38
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.24 E-value=0.0027 Score=69.68 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=43.9
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcCc
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~t 250 (517)
..+.+++|+.++.|++|+.++ ++++.||.+.. +|+.+.++| |.||||+|.+..
T Consensus 176 a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 230 (617)
T PTZ00139 176 SLKYDCNFFIEYFALDLIMDE-DGECRGVIAMSMEDGSIHRFRA-HYTVIATGGYGR 230 (617)
T ss_pred HHhCCCEEEeceEEEEEEECC-CCEEEEEEEEECCCCeEEEEEC-CcEEEeCCCCcc
Confidence 345789999999999999843 47999999853 788888988 579999999864
No 39
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.22 E-value=0.0031 Score=69.52 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=43.9
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcCc
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~t 250 (517)
.++.|++|+.++.|++|+.+ +++++||.+.. +|..+.+.| |.||||+|.+..
T Consensus 180 ~~~~gV~i~~~t~v~~Li~d--~g~V~GV~~~~~~~g~~~~i~A-kaVVLATGG~g~ 233 (640)
T PRK07573 180 IAAGTVKMYTRTEMLDLVVV--DGRARGIVARNLVTGEIERHTA-DAVVLATGGYGN 233 (640)
T ss_pred HHhcCCEEEeceEEEEEEEe--CCEEEEEEEEECCCCcEEEEEC-CEEEECCCCccc
Confidence 34678999999999999986 46999999874 577778888 579999999886
No 40
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.20 E-value=0.002 Score=70.26 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=42.4
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcCc
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~t 250 (517)
.+.+++|+.++.|++|+.+ +++++||.+.. +++...++| |.||||+|.+..
T Consensus 140 ~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGG~~~ 192 (566)
T TIGR01812 140 LKLGVSFFNEYFALDLIHD--DGRVRGVVAYDLKTGEIVFFRA-KAVVLATGGYGR 192 (566)
T ss_pred HHcCCEEEeccEEEEEEEe--CCEEEEEEEEECCCCcEEEEEC-CeEEECCCcccC
Confidence 3458999999999999887 47999998863 677778888 689999999863
No 41
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.19 E-value=0.0039 Score=68.34 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=40.8
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEE--eCCeEEEEEecceEEEecCCcC
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFM--KNNKKRVVYAKKEVVLSAGAFF 249 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~--~~g~~~~v~a~keVIlaaGai~ 249 (517)
++.|++|+.++.|++|+.+ +++++||.+. .+++...++| |.||||+|.+.
T Consensus 144 ~~ggV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~ 195 (608)
T PRK06854 144 KALGDNVLNRVFITDLLVD--DNRIAGAVGFSVRENKFYVFKA-KAVIVATGGAA 195 (608)
T ss_pred hcCCCEEEeCCEEEEEEEe--CCEEEEEEEEEccCCcEEEEEC-CEEEECCCchh
Confidence 4457999999999999876 4689999864 3566678888 57999999876
No 42
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.19 E-value=0.0037 Score=68.25 Aligned_cols=52 Identities=19% Similarity=0.386 Sum_probs=42.5
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEE--eCCeEEEEEecceEEEecCCcCc
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFM--KNNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~--~~g~~~~v~a~keVIlaaGai~t 250 (517)
..+.|++|++++.|++|+.+ ++++.||... .+++...++| |.||||+|.+..
T Consensus 145 ~~~~gi~i~~~t~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVVlATGG~~~ 198 (575)
T PRK05945 145 LRRYGVTIYDEWYVMRLILE--DNQAKGVVMYHIADGRLEVVRA-KAVMFATGGYGR 198 (575)
T ss_pred HhhCCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCeEEEEEC-CEEEECCCCCcC
Confidence 34578999999999999876 4689999864 3677778888 579999999863
No 43
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.17 E-value=0.0047 Score=66.81 Aligned_cols=55 Identities=22% Similarity=0.395 Sum_probs=44.7
Q ss_pred cCCCCCeEEEcCcEEEEEEecC----CCCeEEEEEEEe--CCeEEEEEecceEEEecCCcCc
Q psy10349 195 IVERPNFHVMKKARVLKVLIDP----NTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 195 ~~~~~nl~i~~~~~V~ri~~~~----~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~t 250 (517)
+.+++|++|+.++.|++|+.++ ++++++||.+.+ +++...++| |.||||+|.+..
T Consensus 148 ~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~ 208 (536)
T PRK09077 148 ARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRA-KFVVLATGGASK 208 (536)
T ss_pred HHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEec-CeEEECCCCCCC
Confidence 4456799999999999998763 137899999864 577788988 689999999874
No 44
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.09 E-value=0.0018 Score=69.19 Aligned_cols=51 Identities=29% Similarity=0.431 Sum_probs=42.2
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCc
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~t 250 (517)
+++|++|+.++.|++|+.+ +++++||.+...+....++| |.||||+|++..
T Consensus 140 ~~~gi~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~~~~i~A-~~VVlAtGG~~~ 190 (488)
T TIGR00551 140 NHPNIRIIEGENALDLLIE--TGRVVGVWVWNRETVETCHA-DAVVLATGGAGK 190 (488)
T ss_pred hcCCcEEEECeEeeeeecc--CCEEEEEEEEECCcEEEEEc-CEEEECCCcccC
Confidence 3479999999999999876 46899998876565567888 579999999875
No 45
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.08 E-value=0.0034 Score=67.92 Aligned_cols=53 Identities=28% Similarity=0.317 Sum_probs=41.0
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEE-----eCCeEEEEEecceEEEecCCcCc
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFM-----KNNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~-----~~g~~~~v~a~keVIlaaGai~t 250 (517)
.++.+++|+.++.|++|+.++ +++++||.+. .++....++| |.||||+|.+..
T Consensus 154 ~~~~gV~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~~~~~g~~~i~A-k~VIlATGG~~~ 211 (541)
T PRK07804 154 VRADPLDIREHALALDLLTDG-TGAVAGVTLHVLGEGSPDGVGAVHA-PAVVLATGGLGQ 211 (541)
T ss_pred HHhCCCEEEECeEeeeeEEcC-CCeEEEEEEEeccCCCCCcEEEEEc-CeEEECCCCCCC
Confidence 345569999999999998874 3689999886 2333467888 679999999763
No 46
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.98 E-value=0.0083 Score=65.62 Aligned_cols=50 Identities=12% Similarity=0.032 Sum_probs=41.4
Q ss_pred CCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcCc
Q psy10349 199 PNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 199 ~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~t 250 (517)
.+++|+.++.|++|+.++ +++++||.+.. +++.+.+.| |.||||+|.+..
T Consensus 150 ~~i~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 201 (589)
T PRK08641 150 GLVTKYEGWEFLGAVLDD-EGVCRGIVAQDLFTMEIESFPA-DAVIMATGGPGI 201 (589)
T ss_pred CCcEEEeeEEEEEEEECC-CCEEEEEEEEECCCCcEEEEEC-CEEEECCCCCcC
Confidence 358999999999999864 47999999874 566677888 689999999885
No 47
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=96.94 E-value=0.008 Score=65.55 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=43.5
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcCc
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~t 250 (517)
.+.+|++++.++.|++|+.+ ++++.||.+.. +|+...++| |.||||+|.+.-
T Consensus 143 ~~~~~i~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 196 (580)
T TIGR01176 143 LTYPQIMRYDEWFVTDLLVD--DGRVCGLVAIEMAEGRLVTILA-DAVVLATGGAGR 196 (580)
T ss_pred HhcCCCEEEeCeEEEEEEee--CCEEEEEEEEEcCCCcEEEEec-CEEEEcCCCCcc
Confidence 34578999999999999987 46999998763 677788999 589999999774
No 48
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.94 E-value=0.002 Score=70.00 Aligned_cols=61 Identities=18% Similarity=0.334 Sum_probs=50.5
Q ss_pred ccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHH
Q psy10349 194 PIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLL 256 (517)
Q Consensus 194 ~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~ 256 (517)
..+++.+++|++++.|++|+.+ +++++||.+..+++..+++|++.||||+|.+..-+-|+.
T Consensus 216 ~~~~~~gv~v~~~t~v~~l~~~--~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 216 IGLQRAGVPVLLNTPLTDLYVE--DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred HHHHcCCCEEEeCCEEEEEEEe--CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence 3345679999999999999986 468999998777888899997789999999988655543
No 49
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.93 E-value=0.0075 Score=65.97 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=42.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcCc
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~t 250 (517)
...+++|+.++.|++|+.++ ++++.||.+.. +++...++| |.||||+|.+..
T Consensus 159 ~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 212 (591)
T PRK07057 159 VAAKTQFFVEWMALDLIRDA-DGDVLGVTALEMETGDVYILEA-KTTLFATGGAGR 212 (591)
T ss_pred HhcCCEEEeCcEEEEEEEcC-CCeEEEEEEEEcCCCeEEEEEC-CeEEECCCCccc
Confidence 45789999999999999864 36899999863 677778888 579999999874
No 50
>PRK08275 putative oxidoreductase; Provisional
Probab=96.92 E-value=0.0089 Score=64.96 Aligned_cols=57 Identities=25% Similarity=0.272 Sum_probs=44.4
Q ss_pred hhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcC
Q psy10349 191 FLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFF 249 (517)
Q Consensus 191 ~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~ 249 (517)
.|....++.+++|+.++.|++|+.++ ++++.||.+.. +|+...++| |.||||+|.+.
T Consensus 142 ~L~~~~~~~gv~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~ 200 (554)
T PRK08275 142 VLYRQLKRARVLITNRIMATRLLTDA-DGRVAGALGFDCRTGEFLVIRA-KAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHCCCEEEcceEEEEEEEcC-CCeEEEEEEEecCCCcEEEEEC-CEEEECCCCcc
Confidence 34343456789999999999998864 36899998753 677778888 57999999975
No 51
>PRK08071 L-aspartate oxidase; Provisional
Probab=96.90 E-value=0.0086 Score=64.32 Aligned_cols=49 Identities=29% Similarity=0.452 Sum_probs=41.6
Q ss_pred CCeEEEcCcEEEEEEecCCCCeEEEEEEEe-CCeEEEEEecceEEEecCCcCc
Q psy10349 199 PNFHVMKKARVLKVLIDPNTKRVFGVEFMK-NNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 199 ~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-~g~~~~v~a~keVIlaaGai~t 250 (517)
.+++|+.++.|++|+.+ ++++.||.+.. +++.+.++| |.||||+|.+..
T Consensus 142 ~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~g~~~~i~A-k~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIE--NGRCIGVLTKDSEGKLKRYYA-DYVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeec--CCEEEEEEEEECCCcEEEEEc-CeEEEecCCCcc
Confidence 58999999999999876 46899998875 567778888 579999999874
No 52
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=96.90 E-value=0.0071 Score=63.11 Aligned_cols=57 Identities=19% Similarity=0.160 Sum_probs=36.8
Q ss_pred cCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCe--EEEEEecceEEEecCCcCcHHHHHH
Q psy10349 195 IVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNK--KRVVYAKKEVVLSAGAFFSPHLLLL 256 (517)
Q Consensus 195 ~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~--~~~v~a~keVIlaaGai~tp~lLl~ 256 (517)
..++.+++|+.++.|++|..+ ++.++ |.+...+. ..+++|+ .||+|+|+- ++.|+..
T Consensus 206 ~a~~~G~~i~~~~~V~~i~~~--~~~~~-v~~~~~~~~~~~~i~a~-~vV~a~G~~-s~~l~~~ 264 (410)
T PRK12409 206 ACARLGVQFRYGQEVTSIKTD--GGGVV-LTVQPSAEHPSRTLEFD-GVVVCAGVG-SRALAAM 264 (410)
T ss_pred HHHhCCCEEEcCCEEEEEEEe--CCEEE-EEEEcCCCCccceEecC-EEEECCCcC-hHHHHHH
Confidence 345668999999999999865 33432 33333221 2457884 699999964 5555443
No 53
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.80 E-value=0.0033 Score=64.92 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=46.3
Q ss_pred hhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHcCCCCh
Q psy10349 191 FLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGPR 262 (517)
Q Consensus 191 ~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~SGIGp~ 262 (517)
++..+ ...|.+|..++.|++|...+++ ++-+. ..+|++. ++| |-||.||| ..+-+|+.++|+.+.
T Consensus 159 l~e~a-~~~g~~i~ln~eV~~i~~~~dg--~~~~~-~~~g~~~-~~a-k~Vin~AG-l~Ad~la~~~g~~~~ 223 (429)
T COG0579 159 LAEEA-QANGVELRLNTEVTGIEKQSDG--VFVLN-TSNGEET-LEA-KFVINAAG-LYADPLAQMAGIPED 223 (429)
T ss_pred HHHHH-HHcCCEEEecCeeeEEEEeCCc--eEEEE-ecCCcEE-EEe-eEEEECCc-hhHHHHHHHhCCCcc
Confidence 44333 3449999999999999887543 22222 2356555 889 56999998 578889999998873
No 54
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.77 E-value=0.013 Score=67.42 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=41.5
Q ss_pred CCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcC
Q psy10349 198 RPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFF 249 (517)
Q Consensus 198 ~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~ 249 (517)
+.++.+.+++.+++|+.+ +++++||.+.. +|+.+.++| |.||||+|.+.
T Consensus 155 ~~~i~~~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g 205 (897)
T PRK13800 155 RERIRIENRLMPVRVLTE--GGRAVGAAALNTRTGEFVTVGA-KAVILATGPCG 205 (897)
T ss_pred cCCcEEEeceeeEEEEee--CCEEEEEEEEecCCCcEEEEEC-CEEEECCCccc
Confidence 358999999999999876 57999999763 788888989 68999999975
No 55
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.64 E-value=0.012 Score=61.58 Aligned_cols=52 Identities=25% Similarity=0.331 Sum_probs=36.7
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHH
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLL 255 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl 255 (517)
.++.+.+|++++.|++|..+ ++++++|+.. ++ ++++ +.||+|+|+. +..|+.
T Consensus 211 ~~~~G~~i~~~~~V~~i~~~--~~~~~~v~t~-~~---~~~a-~~VV~a~G~~-~~~l~~ 262 (416)
T PRK00711 211 AEQLGVKFRFNTPVDGLLVE--GGRITGVQTG-GG---VITA-DAYVVALGSY-STALLK 262 (416)
T ss_pred HHHCCCEEEcCCEEEEEEec--CCEEEEEEeC-Cc---EEeC-CEEEECCCcc-hHHHHH
Confidence 35568999999999999876 4566666432 22 5778 4699999975 455543
No 56
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.49 E-value=0.029 Score=61.36 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=42.1
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcC
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFF 249 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~ 249 (517)
.+..+++|+.++.|++|+.+ +++++||.+.. +++...++| |.||||+|.+.
T Consensus 148 ~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~ 200 (577)
T PRK06069 148 LRFDNIHFYDEHFVTSLIVE--NGVFKGVTAIDLKRGEFKVFQA-KAGIIATGGAG 200 (577)
T ss_pred HhcCCCEEEECCEEEEEEEE--CCEEEEEEEEEcCCCeEEEEEC-CcEEEcCchhc
Confidence 34478999999999999876 46899998763 677678888 57999999985
No 57
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=96.47 E-value=0.016 Score=60.17 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=39.3
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHcCCC
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIG 260 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~SGIG 260 (517)
.++.+++|+.++.|++|..++ +.+ .|+. .++ +++++ .||+|+|+ .++.++...|+.
T Consensus 159 ~~~~Gv~i~~~~~V~~i~~~~--~~~-~V~~-~~g---~i~ad-~vV~A~G~-~s~~l~~~~g~~ 214 (393)
T PRK11728 159 IQARGGEIRLGAEVTALDEHA--NGV-VVRT-TQG---EYEAR-TLINCAGL-MSDRLAKMAGLE 214 (393)
T ss_pred HHhCCCEEEcCCEEEEEEecC--CeE-EEEE-CCC---EEEeC-EEEECCCc-chHHHHHHhCCC
Confidence 345689999999999997653 332 3433 233 57784 69999997 678888777654
No 58
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=96.20 E-value=0.014 Score=60.87 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=39.4
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHcCC
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGI 259 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~SGI 259 (517)
..+.+++++.++.|+.|..++ ++++.+|+.. +| +++++ .||+|||+. ++.|+...|+
T Consensus 193 a~~~Gv~~~~~~~V~~i~~~~-~~~~~~v~t~-~g---~i~a~-~vVvaagg~-~~~l~~~~g~ 249 (407)
T TIGR01373 193 ADRRGVDIIQNCEVTGFIRRD-GGRVIGVETT-RG---FIGAK-KVGVAVAGH-SSVVAAMAGF 249 (407)
T ss_pred HHHCCCEEEeCCEEEEEEEcC-CCcEEEEEeC-Cc---eEECC-EEEECCChh-hHHHHHHcCC
Confidence 345689999999999997643 3456666543 34 47884 599999985 4556655543
No 59
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.17 E-value=0.027 Score=56.72 Aligned_cols=46 Identities=26% Similarity=0.394 Sum_probs=34.7
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCc
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAF 248 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai 248 (517)
....+++|+.++.|+.|..+ ++++++|... +| +++|+ .||+|+|+.
T Consensus 147 ~~~~g~~~~~~~~v~~i~~~--~~~~~~v~~~-~g---~~~a~-~vV~a~G~~ 192 (337)
T TIGR02352 147 LEKLGVEIIEHTEVQHIEIR--GEKVTAIVTP-SG---DVQAD-QVVLAAGAW 192 (337)
T ss_pred HHHcCCEEEccceEEEEEee--CCEEEEEEcC-CC---EEECC-EEEEcCChh
Confidence 34568999999999999876 4567777532 23 57785 699999973
No 60
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.99 E-value=0.097 Score=53.82 Aligned_cols=55 Identities=25% Similarity=0.274 Sum_probs=36.3
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHcCC
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGI 259 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~SGI 259 (517)
.++.+++++.++.|++|..+ ++.+ .|+. .++ +++++ .||+|+|+.. .+|+..-|+
T Consensus 155 ~~~~g~~~~~~~~V~~i~~~--~~~~-~v~~-~~~---~i~a~-~vV~aaG~~~-~~l~~~~g~ 209 (380)
T TIGR01377 155 AEAHGATVRDGTKVVEIEPT--ELLV-TVKT-TKG---SYQAN-KLVVTAGAWT-SKLLSPLGI 209 (380)
T ss_pred HHHcCCEEECCCeEEEEEec--CCeE-EEEe-CCC---EEEeC-EEEEecCcch-HHHhhhccc
Confidence 34568999999999999765 3333 2432 223 47784 6999999854 455544444
No 61
>PRK12839 hypothetical protein; Provisional
Probab=95.91 E-value=0.018 Score=62.62 Aligned_cols=55 Identities=22% Similarity=0.259 Sum_probs=44.2
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcH
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSP 251 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp 251 (517)
..+.+++|++++.|++|+.++ +++++||.+...+...++.++|.||||+|.+..-
T Consensus 224 a~~~Gv~i~~~t~v~~Li~~~-~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n 278 (572)
T PRK12839 224 ADDLGVDLRVSTSATSLTTDK-NGRVTGVRVQGPDGAVTVEATRGVVLATGGFPND 278 (572)
T ss_pred HHHCCCEEEcCCEEEEEEECC-CCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccC
Confidence 345689999999999998764 4789999987544456677777899999999873
No 62
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=95.89 E-value=0.04 Score=56.45 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=20.0
Q ss_pred CchhccccccCCCCeEEEEcccC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGD 23 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~ 23 (517)
|+.+|..|++ .|.+|+|||++.
T Consensus 12 G~s~A~~L~~-~G~~V~vle~~~ 33 (365)
T TIGR03364 12 GLAHAYAAAR-RGLSVTVIERSS 33 (365)
T ss_pred HHHHHHHHHH-CCCeEEEEeCCC
Confidence 6789999999 799999999985
No 63
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=95.88 E-value=0.031 Score=60.35 Aligned_cols=86 Identities=24% Similarity=0.245 Sum_probs=60.9
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEE--eCCeEEEEEecceEEEecCCcC-----cHHHHHHcCCCChhhhhhC
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFM--KNNKKRVVYAKKEVVLSAGAFF-----SPHLLLLSGIGPREQLEQF 268 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~--~~g~~~~v~a~keVIlaaGai~-----tp~lLl~SGIGp~~~L~~~ 268 (517)
.+..+++|+.+..|++|+.+++ +.+.||... ++++.+.++| |.||||+|... |+-.....|=|- ....+.
T Consensus 149 ~~~~~~~~~~~~~~~~l~~~~~-~~v~Gvv~~~~~~g~~~~~~a-kavilaTGG~g~~~~~~t~~~~~tGdG~-~ma~~a 225 (562)
T COG1053 149 LKFSGIEIFDEYFVLDLLVDDG-GGVAGVVARDLRTGELYVFRA-KAVILATGGAGRLYPYTTNAHIGTGDGV-AMAYRA 225 (562)
T ss_pred HHhhcchhhhhhhhhhheecCC-CcEEEEEEEEecCCcEEEEec-CcEEEccCCceEEEeccCCccccCCcHH-HHHHhc
Confidence 3447789999999999998853 448888876 4788888889 67999999988 554444433332 233466
Q ss_pred CCCeeeeCccccccccCcCC
Q psy10349 269 NIPVLADLQVGENLQEHPAF 288 (517)
Q Consensus 269 GI~~~~dlpVG~nl~dH~~~ 288 (517)
|.+ .. ..++.|-||..
T Consensus 226 Ga~-l~---dme~~Q~hpt~ 241 (562)
T COG1053 226 GAP-LI---DMEFVQFHPTG 241 (562)
T ss_pred CCc-cc---CCCccccccce
Confidence 666 33 46677888864
No 64
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=95.46 E-value=0.027 Score=56.91 Aligned_cols=57 Identities=23% Similarity=0.329 Sum_probs=39.2
Q ss_pred hhhhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEE-eCCeEEEEEecceEEEecCCcCcHHH
Q psy10349 188 SQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFM-KNNKKRVVYAKKEVVLSAGAFFSPHL 253 (517)
Q Consensus 188 ~~~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~-~~g~~~~v~a~keVIlaaGai~tp~l 253 (517)
..++|.. .++.|++|++++.|..|..++ .+-.+. .+|+ +|++. .+|||.|..--|++
T Consensus 114 v~~ll~~-~~~~gV~i~~~~~v~~v~~~~-----~~f~l~t~~g~--~i~~d-~lilAtGG~S~P~l 171 (408)
T COG2081 114 VDALLKE-LEALGVTIRTRSRVSSVEKDD-----SGFRLDTSSGE--TVKCD-SLILATGGKSWPKL 171 (408)
T ss_pred HHHHHHH-HHHcCcEEEecceEEeEEecC-----ceEEEEcCCCC--EEEcc-EEEEecCCcCCCCC
Confidence 3334433 456799999999999998763 122223 3454 78885 59999998887854
No 65
>PRK08401 L-aspartate oxidase; Provisional
Probab=95.45 E-value=0.088 Score=55.95 Aligned_cols=49 Identities=12% Similarity=0.278 Sum_probs=36.2
Q ss_pred ccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCc
Q psy10349 194 PIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 194 ~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~t 250 (517)
...++.+++++.+ .|++|+.+ +++++||.. ++. .+++ +.||||+|++..
T Consensus 128 ~~~~~~gv~i~~~-~v~~l~~~--~g~v~Gv~~--~g~--~i~a-~~VVLATGG~~~ 176 (466)
T PRK08401 128 KHARELGVNFIRG-FAEELAIK--NGKAYGVFL--DGE--LLKF-DATVIATGGFSG 176 (466)
T ss_pred HHHHhcCCEEEEe-EeEEEEee--CCEEEEEEE--CCE--EEEe-CeEEECCCcCcC
Confidence 3345568999876 78888765 468888876 343 5778 579999999875
No 66
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=95.14 E-value=0.042 Score=58.86 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=44.5
Q ss_pred CCCCCeEEEcCcEEEEEEecCCC--CeEEEEEEEeC--CeEEEEEecceEEEecCCcCc
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNT--KRVFGVEFMKN--NKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~--~~a~gV~~~~~--g~~~~v~a~keVIlaaGai~t 250 (517)
++..+++|++++.|++|+++.++ ++|+||++.++ ++...+.+++.|||+.|.+..
T Consensus 236 Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 236 LEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred HHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 35679999999999999996223 78999999863 455667888999999998753
No 67
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=94.91 E-value=0.032 Score=59.21 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=31.1
Q ss_pred cCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcC
Q psy10349 195 IVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFF 249 (517)
Q Consensus 195 ~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~ 249 (517)
+.++.+++|+.++.|+.|.. ++. ..|+. .+| +++|+ .||+|+|+.-
T Consensus 192 ~a~~~Gv~i~~~t~V~~i~~---~~~-~~v~t-~~g---~v~A~-~VV~Atga~s 237 (460)
T TIGR03329 192 VALELGVEIHENTPMTGLEE---GQP-AVVRT-PDG---QVTAD-KVVLALNAWM 237 (460)
T ss_pred HHHHcCCEEECCCeEEEEee---CCc-eEEEe-CCc---EEECC-EEEEcccccc
Confidence 34566899999999999863 222 23332 234 47884 6999999863
No 68
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=94.78 E-value=0.32 Score=49.87 Aligned_cols=48 Identities=25% Similarity=0.308 Sum_probs=33.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-CCeEEEEEecceEEEecCCcCcHHHH
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-NNKKRVVYAKKEVVLSAGAFFSPHLL 254 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-~g~~~~v~a~keVIlaaGai~tp~lL 254 (517)
.+.+++|+.++.|++|..+. +. +.+.. ++ ++++ +.||+|+|+. +..|+
T Consensus 160 ~~~gv~i~~~~~v~~i~~~~--~~---~~v~~~~g---~~~a-~~vV~A~G~~-~~~l~ 208 (376)
T PRK11259 160 REAGAELLFNEPVTAIEADG--DG---VTVTTADG---TYEA-KKLVVSAGAW-VKDLL 208 (376)
T ss_pred HHCCCEEECCCEEEEEEeeC--Ce---EEEEeCCC---EEEe-eEEEEecCcc-hhhhc
Confidence 45689999999999998753 32 33332 33 5778 5699999975 44443
No 69
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=94.41 E-value=0.11 Score=53.78 Aligned_cols=68 Identities=25% Similarity=0.261 Sum_probs=51.8
Q ss_pred hhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHcCCC
Q psy10349 191 FLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIG 260 (517)
Q Consensus 191 ~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~SGIG 260 (517)
++..+.+++|++|..+++|+.|....++...+-|.-..+++..+++| |-|+|.||+ ++=.||+.|||.
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a-~FVfvGAGG-~aL~LLqksgi~ 254 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRA-KFVFVGAGG-GALPLLQKSGIP 254 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEEC-CEEEECCch-HhHHHHHHcCCh
Confidence 34334567899999999999999886544444444445788889999 579999997 477799999884
No 70
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=94.28 E-value=0.18 Score=48.43 Aligned_cols=70 Identities=24% Similarity=0.227 Sum_probs=44.1
Q ss_pred chhhhhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHcCCCChhhh
Q psy10349 186 SASQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGPREQL 265 (517)
Q Consensus 186 s~~~~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~SGIGp~~~L 265 (517)
|+...|| ..+|+|+++++|++|-..++ . =-+... +|. ....+ +.|||+.=+=+|+.||--+-++-+..|
T Consensus 108 salak~L-----AtdL~V~~~~rVt~v~~~~~-~--W~l~~~-~g~-~~~~~-d~vvla~PAPQ~~~LLt~~~~~~p~~l 176 (331)
T COG3380 108 SALAKFL-----ATDLTVVLETRVTEVARTDN-D--WTLHTD-DGT-RHTQF-DDVVLAIPAPQTATLLTTDADDLPAAL 176 (331)
T ss_pred HHHHHHH-----hccchhhhhhhhhhheecCC-e--eEEEec-CCC-ccccc-ceEEEecCCCcchhhcCcccccchHHH
Confidence 4444466 34799999999999977632 2 112221 222 23345 579999999999999976644434434
Q ss_pred h
Q psy10349 266 E 266 (517)
Q Consensus 266 ~ 266 (517)
.
T Consensus 177 ~ 177 (331)
T COG3380 177 R 177 (331)
T ss_pred H
Confidence 3
No 71
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=94.24 E-value=0.12 Score=50.80 Aligned_cols=63 Identities=22% Similarity=0.174 Sum_probs=45.8
Q ss_pred hcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEE---e----CCe--------EEEEEecceEEEecCCcCcHHHHHH
Q psy10349 192 LRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFM---K----NNK--------KRVVYAKKEVVLSAGAFFSPHLLLL 256 (517)
Q Consensus 192 l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~---~----~g~--------~~~v~a~keVIlaaGai~tp~lLl~ 256 (517)
+..+.++..+++...++|.+|... +++++||.-. . .|+ .+++.| ..||++.|.|+--+=|.+
T Consensus 159 ~re~~~~~~v~f~~RHrV~~l~~t--~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A-~aviv~SGGIGGnhelVR 235 (552)
T COG3573 159 LREAQRRGRVTFRFRHRVDGLTTT--GGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSA-SAVIVASGGIGGNHELVR 235 (552)
T ss_pred HHHHHhCCceEEEeeeeccceEee--CCeEeeecccccCCCccccCCCccceeecceEEee-eeEEEecCCcCCCHHHHH
Confidence 334455788999999999999887 6899998631 1 121 267788 479999999987666655
Q ss_pred c
Q psy10349 257 S 257 (517)
Q Consensus 257 S 257 (517)
-
T Consensus 236 r 236 (552)
T COG3573 236 R 236 (552)
T ss_pred h
Confidence 3
No 72
>PRK07512 L-aspartate oxidase; Provisional
Probab=93.73 E-value=0.099 Score=56.27 Aligned_cols=52 Identities=27% Similarity=0.361 Sum_probs=42.5
Q ss_pred cCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcC
Q psy10349 195 IVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFF 249 (517)
Q Consensus 195 ~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~ 249 (517)
+.++++++|+.++.|++|+.+ +++++||.+..++...+++| |.||||+|.+.
T Consensus 146 ~~~~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~~~~i~A-k~VVLATGG~~ 197 (513)
T PRK07512 146 VRATPSITVLEGAEARRLLVD--DGAVAGVLAATAGGPVVLPA-RAVVLATGGIG 197 (513)
T ss_pred HHhCCCCEEEECcChhheeec--CCEEEEEEEEeCCeEEEEEC-CEEEEcCCCCc
Confidence 334568999999999999876 46899998876666667888 57999999986
No 73
>KOG2404|consensus
Probab=93.53 E-value=0.084 Score=51.65 Aligned_cols=48 Identities=27% Similarity=0.498 Sum_probs=40.2
Q ss_pred CeEEEcCcEEEEEEecCCCCeEEEEEEEe-CCeEEEEEecceEEEecCCcCc
Q psy10349 200 NFHVMKKARVLKVLIDPNTKRVFGVEFMK-NNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 200 nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-~g~~~~v~a~keVIlaaGai~t 250 (517)
-++|+++++|.+|+.+ .+++.||+|.+ +|+...+.+ ..||||.|.+.-
T Consensus 159 ~~ki~~nskvv~il~n--~gkVsgVeymd~sgek~~~~~-~~VVlatGGf~y 207 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRN--NGKVSGVEYMDASGEKSKIIG-DAVVLATGGFGY 207 (477)
T ss_pred HHhhhhcceeeeeecC--CCeEEEEEEEcCCCCccceec-CceEEecCCcCc
Confidence 3799999999999955 67999999996 677666767 469999999885
No 74
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=93.51 E-value=0.28 Score=51.62 Aligned_cols=47 Identities=23% Similarity=0.203 Sum_probs=33.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCc
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAF 248 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai 248 (517)
+..+-++++++.|++|..++ ++++.+|... +|+ +++| +.||....-+
T Consensus 243 a~~Gg~~~L~~~V~~I~~~~-~g~~~~V~~~-~Ge--~i~a-~~VV~~~s~~ 289 (443)
T PTZ00363 243 AIYGGTYMLNTPVDEVVFDE-NGKVCGVKSE-GGE--VAKC-KLVICDPSYF 289 (443)
T ss_pred HHcCcEEEcCCeEEEEEEcC-CCeEEEEEEC-CCc--EEEC-CEEEECcccc
Confidence 34578999999999999874 3678888654 454 4678 4577755544
No 75
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=93.48 E-value=0.088 Score=54.76 Aligned_cols=68 Identities=24% Similarity=0.314 Sum_probs=41.8
Q ss_pred ccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHcCCCChhhhhhCCCC
Q psy10349 194 PIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIP 271 (517)
Q Consensus 194 ~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~SGIGp~~~L~~~GI~ 271 (517)
...++.+++|.+++.|++|..+ ++ ...|+. +++ ++.+ +.||+|+|....|++ -.+|-|- ..++++|+.
T Consensus 113 ~~l~~~gv~i~~~~~V~~i~~~--~~-~~~v~~--~~~--~i~a-d~VIlAtG~~s~p~~-gs~G~g~-~la~~lG~~ 180 (400)
T TIGR00275 113 NELKELGVEILTNSKVKSIKKD--DN-GFGVET--SGG--EYEA-DKVILATGGLSYPQL-GSTGDGY-EIAESLGHT 180 (400)
T ss_pred HHHHHCCCEEEeCCEEEEEEec--CC-eEEEEE--CCc--EEEc-CEEEECCCCcccCCC-CCCcHHH-HHHHHCCCC
Confidence 3345568999999999999654 23 233444 333 4677 569999999877753 2233332 233445544
No 76
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.45 E-value=0.21 Score=55.14 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=40.3
Q ss_pred CeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcCc
Q psy10349 200 NFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 200 nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~t 250 (517)
|++|+.++.|++|+.+ ++++.||.+.. +++...++| |.||||+|.+..
T Consensus 165 ~v~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~ 214 (626)
T PRK07803 165 RIKVFAECTITELLKD--GGRIAGAFGYWRESGRFVLFEA-PAVVLATGGIGK 214 (626)
T ss_pred ceEEEeCCEEEEEEEE--CCEEEEEEEEECCCCeEEEEEc-CeEEECCCcccC
Confidence 4999999999999986 46899998753 677788999 579999998764
No 77
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=93.36 E-value=0.14 Score=56.85 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=44.0
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcCc
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~t 250 (517)
..+.+++|+.++.|++|+.+ ++++.||.+.. +|+.+.+.| |.||||+|.+..
T Consensus 168 ~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~G~~~~i~A-kaVVLATGG~g~ 221 (657)
T PRK08626 168 AIKLGVPVHDRKEAIALIHD--GKRCYGAVVRCLITGELRAYVA-KATLIATGGYGR 221 (657)
T ss_pred HHhCCCEEEeeEEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEc-CeEEECCCcccC
Confidence 34678999999999999976 57999999874 788888889 579999998773
No 78
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=93.20 E-value=0.24 Score=54.12 Aligned_cols=53 Identities=23% Similarity=0.302 Sum_probs=43.4
Q ss_pred cCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEE--eCCeEEEEEecceEEEecCCcCc
Q psy10349 195 IVERPNFHVMKKARVLKVLIDPNTKRVFGVEFM--KNNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 195 ~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~--~~g~~~~v~a~keVIlaaGai~t 250 (517)
+.+.+|++|+.++.|++|+.+ ++++.||.+. .++....++| |.||||+|.+..
T Consensus 143 ~~~~~~i~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 197 (582)
T PRK09231 143 SLKYPQIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRA-NAVVMATGGAGR 197 (582)
T ss_pred hhcCCCcEEEeCeEEEEEEEe--CCEEEEEEEEEcCCCcEEEEEC-CEEEECCCCCcC
Confidence 334468999999999999986 4789999875 3677788888 589999998774
No 79
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=93.06 E-value=0.1 Score=54.16 Aligned_cols=58 Identities=31% Similarity=0.464 Sum_probs=45.8
Q ss_pred hhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeC-CeEEEEEecceEEEecCCcC
Q psy10349 190 AFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKN-NKKRVVYAKKEVVLSAGAFF 249 (517)
Q Consensus 190 ~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~-g~~~~v~a~keVIlaaGai~ 249 (517)
+.+..+.+++|++|+.++.|.+|+.++ +..+.||.+... ++..+++| +.||||+|.+.
T Consensus 138 ~L~~~v~~~p~I~v~e~~~a~~li~~~-~~~~~Gv~~~~~~~~~~~~~a-~~vVLATGG~g 196 (518)
T COG0029 138 ALLKKVRNRPNITVLEGAEALDLIIED-GIGVAGVLVLNRNGELGTFRA-KAVVLATGGLG 196 (518)
T ss_pred HHHHHHhcCCCcEEEecchhhhhhhcC-CceEeEEEEecCCCeEEEEec-CeEEEecCCCc
Confidence 344456678999999999999999884 235669999864 36788999 57999999875
No 80
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.46 E-value=0.28 Score=53.65 Aligned_cols=58 Identities=21% Similarity=0.186 Sum_probs=45.0
Q ss_pred hcccCCCCCeEEEcCcEEEEEEecCC--CCeEEEEEEE--eCCeEEEEEecceEEEecCCcCc
Q psy10349 192 LRPIVERPNFHVMKKARVLKVLIDPN--TKRVFGVEFM--KNNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 192 l~~~~~~~nl~i~~~~~V~ri~~~~~--~~~a~gV~~~--~~g~~~~v~a~keVIlaaGai~t 250 (517)
|...+.+.+++|+.++.|++|+.+++ +++++||.+. .+++.+.++| |.||||+|.+..
T Consensus 146 L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 207 (583)
T PRK08205 146 LYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHA-KAVVFATGGSGR 207 (583)
T ss_pred HHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEe-CeEEECCCCCcc
Confidence 33334467899999999999988642 2689999875 3677778889 579999999873
No 81
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=91.33 E-value=0.46 Score=52.95 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=34.8
Q ss_pred hhhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHH
Q psy10349 189 QAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLL 254 (517)
Q Consensus 189 ~~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lL 254 (517)
.+++.. ..+ +++|+.++.|++|..+ ++.++ |+. .++. .+.+ +.||+|+|+- ++.|+
T Consensus 412 ~aL~~~-a~~-Gv~i~~~~~V~~i~~~--~~~~~-v~t-~~g~--~~~a-d~VV~A~G~~-s~~l~ 467 (662)
T PRK01747 412 RALLAL-AGQ-QLTIHFGHEVARLERE--DDGWQ-LDF-AGGT--LASA-PVVVLANGHD-AARFA 467 (662)
T ss_pred HHHHHh-ccc-CcEEEeCCEeeEEEEe--CCEEE-EEE-CCCc--EEEC-CEEEECCCCC-ccccc
Confidence 334433 345 8999999999999876 33433 332 2332 3467 4699999974 44443
No 82
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=91.29 E-value=0.46 Score=52.41 Aligned_cols=60 Identities=28% Similarity=0.378 Sum_probs=47.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcCcHHHHHHcC
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFSPHLLLLSG 258 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~tp~lLl~SG 258 (517)
.+.+.+|+.++.|++|..+++++++++|++.+ +++.+++++ +.||+|||+. +.+|+...|
T Consensus 243 ~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a-~~VVnAaGaw-s~~l~~~~g 304 (627)
T PLN02464 243 ALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYA-KVVVNAAGPF-CDEVRKMAD 304 (627)
T ss_pred HhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEe-CEEEECCCHh-HHHHHHhcc
Confidence 45689999999999998763235789998864 566678899 5799999976 677777665
No 83
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=90.96 E-value=0.6 Score=51.27 Aligned_cols=51 Identities=25% Similarity=0.382 Sum_probs=41.3
Q ss_pred CCeEEEcCcEEEEEEecCC-CCeEEEEEEEe--CCeEEEEEecceEEEecCCcCc
Q psy10349 199 PNFHVMKKARVLKVLIDPN-TKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 199 ~nl~i~~~~~V~ri~~~~~-~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~t 250 (517)
.+.+|+.++.|++|+.+++ ++++.||.+.. +++.+.++| |.||||+|.+..
T Consensus 139 ~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 192 (614)
T TIGR02061 139 ALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKA-KTVIVAAGGAVN 192 (614)
T ss_pred CCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEEC-CEEEECCCcccc
Confidence 3469999999999998642 26999998853 677788988 579999999863
No 84
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=90.46 E-value=0.17 Score=46.93 Aligned_cols=62 Identities=26% Similarity=0.394 Sum_probs=37.0
Q ss_pred hhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHcC
Q psy10349 190 AFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSG 258 (517)
Q Consensus 190 ~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~SG 258 (517)
.||....++-++.|+++++|++|..+++ + --|++. ++ .+++| +.||||.|....|+++..-|
T Consensus 86 ~yl~~~~~~~~l~i~~~~~V~~v~~~~~-~--w~v~~~-~~--~~~~a-~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 86 DYLQEYAERFGLEIRFNTRVESVRRDGD-G--WTVTTR-DG--RTIRA-DRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHHHHHTTGGEETS--EEEEEEETT-T--EEEEET-TS---EEEE-EEEEE---SSCSB---S-TT
T ss_pred HHHHHHHhhcCcccccCCEEEEEEEecc-E--EEEEEE-ec--ceeee-eeEEEeeeccCCCCcccccc
Confidence 3666656666888999999999998843 3 223332 34 56678 56999999999999987665
No 85
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=90.06 E-value=1 Score=48.14 Aligned_cols=66 Identities=27% Similarity=0.265 Sum_probs=44.3
Q ss_pred hhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEE--eCCeEEEEEecceEEEecCCcCcHHHHHHcCCC
Q psy10349 191 FLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFM--KNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIG 260 (517)
Q Consensus 191 ~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~--~~g~~~~v~a~keVIlaaGai~tp~lLl~SGIG 260 (517)
+...+.+..+++|+.++.|+.|..+++ +++ .|... .+|+..+++|+ -||+|||+ .+.+|+..+||.
T Consensus 189 L~~~a~~~Ggv~i~~~teV~~I~~~~d-g~~-~v~~~~~~~G~~~~i~A~-~VVvaAGg-~s~~L~~~~Gi~ 256 (494)
T PRK05257 189 LVGYLQKQGNFELQLGHEVRDIKRNDD-GSW-TVTVKDLKTGEKRTVRAK-FVFIGAGG-GALPLLQKSGIP 256 (494)
T ss_pred HHHHHHhCCCeEEEeCCEEEEEEECCC-CCE-EEEEEEcCCCceEEEEcC-EEEECCCc-chHHHHHHcCCC
Confidence 333333444699999999999987543 333 23332 24544568884 69999997 567788888865
No 86
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=89.81 E-value=1.2 Score=47.68 Aligned_cols=69 Identities=23% Similarity=0.195 Sum_probs=45.8
Q ss_pred hhhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEE--eCCeEEEEEecceEEEecCCcCcHHHHHHcCCCC
Q psy10349 189 QAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFM--KNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGP 261 (517)
Q Consensus 189 ~~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~--~~g~~~~v~a~keVIlaaGai~tp~lLl~SGIGp 261 (517)
.+++..+.+..+++|++++.|+.|..++++. .+ |.+. .+++..+++| +.||+|||+ .+-+|+..+|+.+
T Consensus 188 ~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~-w~-v~v~~t~~g~~~~i~A-d~VV~AAGa-wS~~La~~~Gi~~ 258 (497)
T PRK13339 188 RKLAKHLESHPNAQVKYNHEVVDLERLSDGG-WE-VTVKDRNTGEKREQVA-DYVFIGAGG-GAIPLLQKSGIPE 258 (497)
T ss_pred HHHHHHHHhCCCcEEEeCCEEEEEEECCCCC-EE-EEEEecCCCceEEEEc-CEEEECCCc-chHHHHHHcCCCc
Confidence 3455444445689999999999997763333 22 3332 2343346788 469999997 6678888888653
No 87
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=89.77 E-value=0.57 Score=48.60 Aligned_cols=58 Identities=26% Similarity=0.324 Sum_probs=44.6
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHc
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLS 257 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~S 257 (517)
.++.+.+++.++.|+++.++ ++++++|... ++...+++|+ .||||+|++-|..|+...
T Consensus 273 ~~~~Gg~il~g~~V~~i~~~--~~~v~~V~t~-~g~~~~l~AD-~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 273 FEQLGGVMLPGDRVLRAEFE--GNRVTRIHTR-NHRDIPLRAD-HFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHCCCEEEECcEEEEEEee--CCeEEEEEec-CCccceEECC-EEEEccCCCcCHHHHhhc
Confidence 34567899999999999887 5678887653 3434578885 699999999888886654
No 88
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=88.81 E-value=1 Score=48.09 Aligned_cols=54 Identities=19% Similarity=0.237 Sum_probs=40.2
Q ss_pred CeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHcCCCC
Q psy10349 200 NFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGP 261 (517)
Q Consensus 200 nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~SGIGp 261 (517)
+++|++++.|+.|..+. +....|.. .+| +++|+ .||+|||+. |.+|+..+||+.
T Consensus 231 ~v~i~~~t~V~~I~~~~--~~~~~V~T-~~G---~i~A~-~VVvaAG~~-S~~La~~~Gi~~ 284 (497)
T PTZ00383 231 KISINLNTEVLNIERSN--DSLYKIHT-NRG---EIRAR-FVVVSACGY-SLLFAQKMGYGL 284 (497)
T ss_pred CEEEEeCCEEEEEEecC--CCeEEEEE-CCC---EEEeC-EEEECcChh-HHHHHHHhCCCC
Confidence 38999999999998762 33444433 234 58895 699999974 888999999863
No 89
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=88.60 E-value=0.84 Score=47.68 Aligned_cols=58 Identities=33% Similarity=0.387 Sum_probs=43.6
Q ss_pred hcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHH
Q psy10349 192 LRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHL 253 (517)
Q Consensus 192 l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~l 253 (517)
|....++.+++|++++.|+++..+ +++++.|. ..+++...+++ +.||||+|.+.+.-|
T Consensus 265 L~~~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~-~~~g~~~~i~A-D~VVLAtGrf~s~GL 322 (422)
T PRK05329 265 LRRAFERLGGRIMPGDEVLGAEFE--GGRVTAVW-TRNHGDIPLRA-RHFVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEE-eeCCceEEEEC-CEEEEeCCCcccCce
Confidence 434445678999999999999876 35666665 44676778889 479999998876655
No 90
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=88.21 E-value=1.5 Score=46.82 Aligned_cols=60 Identities=20% Similarity=0.149 Sum_probs=42.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEE--eCCeEEEEEecceEEEecCCcCcHHHHHHcCCC
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFM--KNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIG 260 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~--~~g~~~~v~a~keVIlaaGai~tp~lLl~SGIG 260 (517)
.+.+++|+.++.|++|..+++ +.+ .|.+. .++...+++| +.||+|||+ .+.+|+...||.
T Consensus 189 ~~~Gv~i~~~t~V~~i~~~~~-~~v-~v~~~~~~~g~~~~i~A-~~VV~AAG~-~s~~La~~~Gi~ 250 (483)
T TIGR01320 189 VQNGTTIRFGHEVRNLKRQSD-GSW-TVTVKNTRTGGKRTLNT-RFVFVGAGG-GALPLLQKSGIP 250 (483)
T ss_pred HhCCCEEEeCCEEEEEEEcCC-CeE-EEEEeeccCCceEEEEC-CEEEECCCc-chHHHHHHcCCC
Confidence 345899999999999987532 222 23332 3454557888 469999997 467788888875
No 91
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=87.36 E-value=0.18 Score=53.03 Aligned_cols=63 Identities=24% Similarity=0.366 Sum_probs=0.0
Q ss_pred hhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHcCC
Q psy10349 191 FLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGI 259 (517)
Q Consensus 191 ~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~SGI 259 (517)
.|...+...|++|+.++.|..++.+ ++++++|.+...+...+|+| |.||-|.| ...|+-++|+
T Consensus 95 ~l~~~l~e~gv~v~~~t~v~~v~~~--~~~i~~V~~~~~~g~~~i~A-~~~IDaTG---~g~l~~~aG~ 157 (428)
T PF12831_consen 95 VLDEMLAEAGVEVLLGTRVVDVIRD--GGRITGVIVETKSGRKEIRA-KVFIDATG---DGDLAALAGA 157 (428)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc--cccccccccccccccccccc-cccccccc---cccccccccc
Confidence 4444456689999999999999987 67899999985334889999 57999999 3578888875
No 92
>PLN02661 Putative thiazole synthesis
Probab=86.39 E-value=1.1 Score=45.37 Aligned_cols=55 Identities=27% Similarity=0.367 Sum_probs=41.2
Q ss_pred hhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEE-----eC--C----eEEEEEecceEEEecCCc
Q psy10349 191 FLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFM-----KN--N----KKRVVYAKKEVVLSAGAF 248 (517)
Q Consensus 191 ~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~-----~~--g----~~~~v~a~keVIlaaGai 248 (517)
++..+.+++|++|+.++.|+.|+.+ ++++.||.+. .+ + ....++| |.||||+|.-
T Consensus 178 Li~ka~~~~gVkI~~~t~V~DLI~~--~grVaGVVvnw~~v~~~~~~~s~~dp~~I~A-kaVVlATGh~ 243 (357)
T PLN02661 178 IMSKLLARPNVKLFNAVAAEDLIVK--GDRVGGVVTNWALVAQNHDTQSCMDPNVMEA-KVVVSSCGHD 243 (357)
T ss_pred HHHHHHhcCCCEEEeCeEeeeEEec--CCEEEEEEeecchhhhccCCCCccceeEEEC-CEEEEcCCCC
Confidence 4434556789999999999999987 5689999862 12 1 2357888 5799999943
No 93
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=86.17 E-value=1.3 Score=47.19 Aligned_cols=60 Identities=22% Similarity=0.348 Sum_probs=49.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcCcHHHHHHcCCCC
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGP 261 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~tp~lLl~SGIGp 261 (517)
...+.+|++.+.|++++.+ ++ +.||++.+ +|+++.++| +.||-|||.. +-+|+...+..+
T Consensus 175 ~~~Ga~il~~~~v~~~~re--~~-v~gV~~~D~~tg~~~~ira-~~VVNAaGpW-~d~i~~~~~~~~ 236 (532)
T COG0578 175 AEHGAEILTYTRVESLRRE--GG-VWGVEVEDRETGETYEIRA-RAVVNAAGPW-VDEILEMAGLEQ 236 (532)
T ss_pred Hhcccchhhcceeeeeeec--CC-EEEEEEEecCCCcEEEEEc-CEEEECCCcc-HHHHHHhhcccC
Confidence 3567899999999999988 45 99999984 789999999 5699999964 567777776554
No 94
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=86.10 E-value=0.27 Score=37.04 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=21.2
Q ss_pred CchhccccccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
|+.+|.+|++ .|.+|+|+|+....
T Consensus 8 Gl~aA~~L~~-~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 8 GLAAAYYLAK-AGYRVTVFEKNDRL 31 (68)
T ss_dssp HHHHHHHHHH-TTSEEEEEESSSSS
T ss_pred HHHHHHHHHH-CCCcEEEEecCccc
Confidence 6789999999 79999999999754
No 95
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=83.28 E-value=2.5 Score=43.44 Aligned_cols=49 Identities=24% Similarity=0.497 Sum_probs=36.6
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcH
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSP 251 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp 251 (517)
.+.+|++|+ +.+|+.|..+ ++++.||... +|. .+++ +.||||+|++...
T Consensus 106 ~~~~nl~i~-~~~V~~l~~e--~~~v~GV~~~-~g~--~~~a-~~vVlaTGtfl~G 154 (392)
T PF01134_consen 106 ESHPNLTII-QGEVTDLIVE--NGKVKGVVTK-DGE--EIEA-DAVVLATGTFLNG 154 (392)
T ss_dssp HTSTTEEEE-ES-EEEEEEC--TTEEEEEEET-TSE--EEEE-CEEEE-TTTGBTS
T ss_pred hcCCCeEEE-EcccceEEec--CCeEEEEEeC-CCC--EEec-CEEEEecccccCc
Confidence 457999996 6899999988 5799998774 455 5778 5799999995433
No 96
>PRK06185 hypothetical protein; Provisional
Probab=82.58 E-value=3.4 Score=42.85 Aligned_cols=61 Identities=26% Similarity=0.276 Sum_probs=43.1
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHcCCCC
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGP 261 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~SGIGp 261 (517)
.+.++++|+.++.|+.|..+ ++++++|.+..++...++++ +-||.|.|+- |. +-...||..
T Consensus 119 ~~~~~v~i~~~~~v~~~~~~--~~~v~~v~~~~~~g~~~i~a-~~vI~AdG~~-S~-vr~~~gi~~ 179 (407)
T PRK06185 119 SAYPNFTLRMGAEVTGLIEE--GGRVTGVRARTPDGPGEIRA-DLVVGADGRH-SR-VRALAGLEV 179 (407)
T ss_pred hhCCCcEEEeCCEEEEEEEe--CCEEEEEEEEcCCCcEEEEe-CEEEECCCCc-hH-HHHHcCCCc
Confidence 34578999999999999877 45788888765333357888 5788888864 43 444455543
No 97
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=81.79 E-value=2.2 Score=41.44 Aligned_cols=50 Identities=22% Similarity=0.187 Sum_probs=37.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-----CC---eEEEEEecceEEEecCCc
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-----NN---KKRVVYAKKEVVLSAGAF 248 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-----~g---~~~~v~a~keVIlaaGai 248 (517)
.+.+++|+.++.|+.|..++ ++++.||.+.. .+ ...+++| |-||+|+|.-
T Consensus 115 ~~~Gv~I~~~t~V~dl~~~~-~g~V~Gvv~~~~~v~~~g~~~~~~~i~A-k~VI~ATG~~ 172 (257)
T PRK04176 115 IDAGAKIFNGVSVEDVILRE-DPRVAGVVINWTPVEMAGLHVDPLTIEA-KAVVDATGHD 172 (257)
T ss_pred HHcCCEEEcCceeceeeEeC-CCcEEEEEEccccccccCCCCCcEEEEc-CEEEEEeCCC
Confidence 45689999999999998764 34899998742 12 3468999 5799999953
No 98
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=80.94 E-value=2.1 Score=45.81 Aligned_cols=56 Identities=20% Similarity=0.120 Sum_probs=40.6
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeC--CeEEEEEecceEEEecCCcCcHHHH
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKN--NKKRVVYAKKEVVLSAGAFFSPHLL 254 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~--g~~~~v~a~keVIlaaGai~tp~lL 254 (517)
.++.+.+|++++.|++|+.+ ++++++|.+..+ +....+.| +.||+++..-.+.+||
T Consensus 242 ~~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~~~~~~~~~~~~a-d~VI~~~~~~~~~~ll 299 (492)
T TIGR02733 242 LKRDGGNLLTGQRVTAIHTK--GGRAGWVVVVDSRKQEDLNVKA-DDVVANLPPQSLLELL 299 (492)
T ss_pred HHhcCCEEeCCceEEEEEEe--CCeEEEEEEecCCCCceEEEEC-CEEEECCCHHHHHHhc
Confidence 34468899999999999987 457888887642 22346778 4688888876665543
No 99
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=80.88 E-value=1.9 Score=46.23 Aligned_cols=56 Identities=25% Similarity=0.389 Sum_probs=42.0
Q ss_pred ccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHH
Q psy10349 194 PIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLL 255 (517)
Q Consensus 194 ~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl 255 (517)
...++.+.+|++++.|++|..+ ++++.+|.+. +|+ ++.| +.||+++|...+-+.|+
T Consensus 237 ~~~~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~-~g~--~~~a-d~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 237 KGLEKHGGQIRYRARVTKIILE--NGKAVGVKLA-DGE--KIYA-KRIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHCCCEEEeCCeeeEEEec--CCcEEEEEeC-CCC--EEEc-CEEEECCChHHHHHHhC
Confidence 3345668999999999999887 4688888765 343 4667 46999999877765554
No 100
>KOG0042|consensus
Probab=76.90 E-value=1.3 Score=46.62 Aligned_cols=71 Identities=23% Similarity=0.290 Sum_probs=53.1
Q ss_pred cCCcccchhhhhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcCcHHHHH
Q psy10349 180 QFGRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFSPHLLL 255 (517)
Q Consensus 180 ~~g~r~s~~~~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~tp~lLl 255 (517)
.+.+|-....+.= +.|.+.+++-+.+|.+++.+++ +++.|+++++ +|+++.|+| |-||=|+|-+.-.-..|
T Consensus 221 ~nDaRmnl~vAlT---A~r~GA~v~Nh~ev~~Llkd~~-~kv~Ga~~rD~iTG~e~~I~A-k~VVNATGpfsDsIr~M 293 (680)
T KOG0042|consen 221 HNDARMNLAVALT---AARNGATVLNHVEVVSLLKDKD-GKVIGARARDHITGKEYEIRA-KVVVNATGPFSDSIRKM 293 (680)
T ss_pred CchHHHHHHHHHH---HHhcchhhhhHHHHHHHhhCCC-CceeeeEEEEeecCcEEEEEE-EEEEeCCCCccHHHHhh
Confidence 3455655443221 3467889999999999998875 5899999986 899999999 67999999885543333
No 101
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=74.46 E-value=3.6 Score=44.13 Aligned_cols=53 Identities=21% Similarity=0.195 Sum_probs=40.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHH
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLL 255 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl 255 (517)
++.+.+|++++.|++|..+ ++++++|++. +|+ ++.| +.||+|++...+-..|+
T Consensus 230 ~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~-~g~--~~~a-d~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 230 EDLGGELRLNAEVIRIETE--GGRATAVHLA-DGE--RLDA-DAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHCCCEEEECCeEEEEEee--CCEEEEEEEC-CCC--EEEC-CEEEECCcHHHHHHHhc
Confidence 4558999999999999887 4678888764 343 4567 46999998878777665
No 102
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=74.45 E-value=8.3 Score=39.64 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=37.6
Q ss_pred hhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHH
Q psy10349 191 FLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHL 253 (517)
Q Consensus 191 ~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~l 253 (517)
.|...+++.+++|++++.|+.| ++ +. ..|.+.. + ...++|+ .||||+|..-.|++
T Consensus 91 ~L~~~l~~~gV~i~~~~~V~~i--~~--~~-~~v~~~~-~-~~~~~a~-~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 91 AWLKRLAEQGVQFHTRHRWIGW--QG--GT-LRFETPD-G-QSTIEAD-AVVLALGGASWSQL 145 (376)
T ss_pred HHHHHHHHCCCEEEeCCEEEEE--eC--Cc-EEEEECC-C-ceEEecC-EEEEcCCCcccccc
Confidence 3434456789999999999999 32 22 3444432 2 2347884 69999999888865
No 103
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=74.03 E-value=4.2 Score=43.34 Aligned_cols=57 Identities=21% Similarity=0.191 Sum_probs=40.7
Q ss_pred CCCCeEEEcCcEEEEEEecC--CCC-eEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHH
Q psy10349 197 ERPNFHVMKKARVLKVLIDP--NTK-RVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLL 254 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~--~~~-~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lL 254 (517)
++.+.+|++++.|++|..+. ++. ++++|++...+....+.++ .||+|+.+-.+.+||
T Consensus 230 ~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD-~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 230 EARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKAD-AYVAACDVPGIKRLL 289 (474)
T ss_pred HHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECC-EEEECCChHHHHhhC
Confidence 34678999999999999864 222 4888888532112346774 699999988777775
No 104
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=73.78 E-value=8.6 Score=41.36 Aligned_cols=58 Identities=19% Similarity=0.297 Sum_probs=42.2
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcCcHHHHHH-cCC
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFSPHLLLL-SGI 259 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~tp~lLl~-SGI 259 (517)
.+.+.+|+.++.|++|..+ ++. .+|.+.+ +|+..+++| +.||+|||+. +.+|+.. .|+
T Consensus 166 ~~~Ga~i~~~~~V~~i~~~--~~~-~~v~~~~~~~g~~~~i~a-~~VVnAaG~w-a~~l~~~~~g~ 226 (508)
T PRK12266 166 AERGAEILTRTRVVSARRE--NGL-WHVTLEDTATGKRYTVRA-RALVNAAGPW-VKQFLDDGLGL 226 (508)
T ss_pred HHcCCEEEcCcEEEEEEEe--CCE-EEEEEEEcCCCCEEEEEc-CEEEECCCcc-HHHHHhhccCC
Confidence 4568999999999999765 333 4676654 576788999 5799999975 5666543 354
No 105
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=73.07 E-value=1.5 Score=45.57 Aligned_cols=51 Identities=25% Similarity=0.273 Sum_probs=35.1
Q ss_pred hhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCC
Q psy10349 191 FLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGA 247 (517)
Q Consensus 191 ~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGa 247 (517)
+|...+...+.+++++++|+.+..+++ +.+.++... + .+++| |.||.|-|+
T Consensus 100 ~La~~A~~aGae~~~~~~~~~~~~~~~-~~~~~~~~~--~--~e~~a-~~vI~AdG~ 150 (396)
T COG0644 100 WLAERAEEAGAELYPGTRVTGVIREDD-GVVVGVRAG--D--DEVRA-KVVIDADGV 150 (396)
T ss_pred HHHHHHHHcCCEEEeceEEEEEEEeCC-cEEEEEEcC--C--EEEEc-CEEEECCCc
Confidence 565555667899999999999998853 444444322 2 78889 557776663
No 106
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=72.38 E-value=6.4 Score=38.13 Aligned_cols=58 Identities=14% Similarity=0.050 Sum_probs=40.6
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-----CC---eEEEEEecceEEEecCC-cCcHHHHH
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-----NN---KKRVVYAKKEVVLSAGA-FFSPHLLL 255 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-----~g---~~~~v~a~keVIlaaGa-i~tp~lLl 255 (517)
.+.+++|+.++.|+.|..+++..+++||.+.. .+ ...+++| |-||.|+|. =...++|.
T Consensus 111 ~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~A-k~VVdATG~~a~v~~~l~ 177 (254)
T TIGR00292 111 LQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRS-RVVVDATGHDAEIVAVCA 177 (254)
T ss_pred HHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEc-CEEEEeecCCchHHHHHH
Confidence 34579999999999999874323799998741 12 3568899 689999993 23334444
No 107
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=70.92 E-value=3.9 Score=42.62 Aligned_cols=71 Identities=23% Similarity=0.272 Sum_probs=38.7
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHcCCCChhhhhhCCCCeee
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLA 274 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~SGIGp~~~L~~~GI~~~~ 274 (517)
+++.+++|.+++.|..|..+ ++.+..|+. .++ ..+.++ .||||+|..--|++ =-+|-| =..++++|+.++.
T Consensus 119 l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~-~~~--~~~~a~-~vILAtGG~S~p~~-GS~G~g-y~~a~~lGh~i~~ 189 (409)
T PF03486_consen 119 LKRLGVEIHFNTRVKSIEKK--EDGVFGVKT-KNG--GEYEAD-AVILATGGKSYPKT-GSDGSG-YRIAKKLGHTITP 189 (409)
T ss_dssp HHHHT-EEE-S--EEEEEEE--TTEEEEEEE-TTT--EEEEES-EEEE----SSSGGG-T-SSHH-HHHHHHTT--EEE
T ss_pred HHHcCCEEEeCCEeeeeeec--CCceeEeec-cCc--ccccCC-EEEEecCCCCcccc-CCCcHH-HHHHHHCCCcEec
Confidence 45678999999999999887 356777776 233 367784 69999999888873 222222 1334566655543
No 108
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=70.87 E-value=6.6 Score=42.90 Aligned_cols=47 Identities=30% Similarity=0.525 Sum_probs=36.0
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcC
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFF 249 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~ 249 (517)
.+.+|++|+ ++.|+.|..+ ++++.||.... | ..+.| +.||+|+|++-
T Consensus 111 ~~~~nV~I~-q~~V~~Li~e--~grV~GV~t~d-G--~~I~A-k~VIlATGTFL 157 (618)
T PRK05192 111 ENQPNLDLF-QGEVEDLIVE--NGRVVGVVTQD-G--LEFRA-KAVVLTTGTFL 157 (618)
T ss_pred HcCCCcEEE-EeEEEEEEec--CCEEEEEEECC-C--CEEEC-CEEEEeeCcch
Confidence 356799985 6789999887 56899998753 4 35788 57999999864
No 109
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=70.80 E-value=5.7 Score=41.91 Aligned_cols=48 Identities=13% Similarity=0.092 Sum_probs=35.3
Q ss_pred CCCeEEEcCcEEEEEEecCCCCeEEEEEEEeC-C-eEEEEEecceEEEecCC
Q psy10349 198 RPNFHVMKKARVLKVLIDPNTKRVFGVEFMKN-N-KKRVVYAKKEVVLSAGA 247 (517)
Q Consensus 198 ~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~-g-~~~~v~a~keVIlaaGa 247 (517)
..+.+|++++.|++|..++ +++++||++..+ + +.+++.+ +.||+++..
T Consensus 225 ~~g~~i~l~~~V~~I~~~~-~~~v~~v~~~~~~~~~~~~~~a-~~VI~a~p~ 274 (453)
T TIGR02731 225 SRGGEVRLNSRLKEIVLNE-DGSVKHFVLADGEGQRRFEVTA-DAYVSAMPV 274 (453)
T ss_pred hcCCEEeCCCeeEEEEECC-CCCEEEEEEecCCCCceeEEEC-CEEEEcCCH
Confidence 3467999999999998754 467889988642 2 2236778 569998865
No 110
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=70.08 E-value=11 Score=39.46 Aligned_cols=62 Identities=27% Similarity=0.367 Sum_probs=41.0
Q ss_pred hhhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHcCC
Q psy10349 189 QAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGI 259 (517)
Q Consensus 189 ~~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~SGI 259 (517)
..+|....++.+++|++++.|++|..+ ++++++|. .++. +++| +-||+|.|+ + ..|....|+
T Consensus 111 D~~L~~~a~~~Gv~i~~~~~V~~i~~~--~g~v~~v~--~~g~--~i~A-~~VI~A~G~-~-s~l~~~lgl 172 (428)
T PRK10157 111 DAWLMEQAEEAGAQLITGIRVDNLVQR--DGKVVGVE--ADGD--VIEA-KTVILADGV-N-SILAEKLGM 172 (428)
T ss_pred HHHHHHHHHHCCCEEECCCEEEEEEEe--CCEEEEEE--cCCc--EEEC-CEEEEEeCC-C-HHHHHHcCC
Confidence 345555445678999999999999876 35665554 2343 5678 579999997 3 344444443
No 111
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=68.19 E-value=15 Score=40.07 Aligned_cols=54 Identities=19% Similarity=0.406 Sum_probs=38.0
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHH
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLL 255 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl 255 (517)
.+.+|++|+.+ .|+.+..++ ++++.||+... |. .+.| +.||||+|++-..++..
T Consensus 107 e~~pgV~Ile~-~Vv~li~e~-~g~V~GV~t~~-G~--~I~A-d~VILATGtfL~g~ihi 160 (617)
T TIGR00136 107 ENQPNLSLFQG-EVEDLILED-NDEIKGVVTQD-GL--KFRA-KAVIITTGTFLRGKIHI 160 (617)
T ss_pred HcCCCcEEEEe-EEEEEEEec-CCcEEEEEECC-CC--EEEC-CEEEEccCcccCCCEEe
Confidence 45679999754 788887653 36788998753 43 5788 57999999997444433
No 112
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=65.60 E-value=16 Score=39.22 Aligned_cols=54 Identities=17% Similarity=0.316 Sum_probs=40.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-CCeEEEEEecceEEEecCCcCcHHHHH
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-NNKKRVVYAKKEVVLSAGAFFSPHLLL 255 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-~g~~~~v~a~keVIlaaGai~tp~lLl 255 (517)
.+.+.+|+.++.|+.|..+ ++ ..+|.+.+ .|++++++| +.||.|+|+. +.+|+.
T Consensus 166 ~~~Ga~i~~~~~V~~i~~~--~~-~~~v~~~~~~g~~~~i~a-~~VVnAaG~w-a~~l~~ 220 (502)
T PRK13369 166 AERGATILTRTRCVSARRE--GG-LWRVETRDADGETRTVRA-RALVNAAGPW-VTDVIH 220 (502)
T ss_pred HHCCCEEecCcEEEEEEEc--CC-EEEEEEEeCCCCEEEEEe-cEEEECCCcc-HHHHHh
Confidence 4568999999999999876 33 34566654 367788999 5799999975 666655
No 113
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=65.52 E-value=22 Score=38.27 Aligned_cols=58 Identities=17% Similarity=0.254 Sum_probs=46.4
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcCcHHHHHHc
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFSPHLLLLS 257 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~tp~lLl~S 257 (517)
+..|++|++++.|++|.-+ ++++++|++.. +++..++.+. .||+|.|..-.+.+|..+
T Consensus 398 ~~~gI~i~~~~~v~~i~~~--~g~v~~v~~~~~~~g~~~~i~~D-~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 398 SLPNVTIITNAQTTEVTGD--GDKVTGLTYKDRTTGEEHHLELE-GVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred cCCCcEEEECcEEEEEEcC--CCcEEEEEEEECCCCcEEEEEcC-EEEEeECCccCchHHhhh
Confidence 3579999999999999754 46888998874 5666788884 799999998888877544
No 114
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=65.41 E-value=23 Score=34.59 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=43.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcCcHHHHHHc
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFSPHLLLLS 257 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~tp~lLl~S 257 (517)
++.++++++++.|++|.-+ +++.+|++.. +++..++.+ +.||+|.|....+.+|..+
T Consensus 188 ~~~gv~~~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~i~~-D~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 188 KNPNIEFLWNSTVKEIVGD---NKVEGVKIKNTVTGEEEELKV-DGVFIAIGHEPNTELLKGL 246 (300)
T ss_pred hCCCeEEEeccEEEEEEcc---CcEEEEEEEecCCCceEEEEc-cEEEEeeCCCCChHHHHHh
Confidence 3459999999999999744 3677777753 466678888 5799999977767676554
No 115
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=65.34 E-value=2.5 Score=39.52 Aligned_cols=45 Identities=24% Similarity=0.284 Sum_probs=32.1
Q ss_pred CeEEEcCcEEEEEEecCCCCeEEEEEEEe-----CC---eEEEEEecceEEEecC
Q psy10349 200 NFHVMKKARVLKVLIDPNTKRVFGVEFMK-----NN---KKRVVYAKKEVVLSAG 246 (517)
Q Consensus 200 nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-----~g---~~~~v~a~keVIlaaG 246 (517)
+.+|+..+.|+.|.+.++ .|+.||.+.= .+ ...+++| |-||=+.|
T Consensus 123 Gaki~n~~~veDvi~r~~-~rVaGvVvNWt~V~~~~lhvDPl~i~a-~~VvDaTG 175 (262)
T COG1635 123 GAKIFNGVSVEDVIVRDD-PRVAGVVVNWTPVQMAGLHVDPLTIRA-KAVVDATG 175 (262)
T ss_pred CceeeecceEEEEEEecC-CceEEEEEecchhhhcccccCcceeeE-EEEEeCCC
Confidence 489999999999988753 4899998741 22 2357888 55666666
No 116
>PLN02487 zeta-carotene desaturase
Probab=65.27 E-value=7.1 Score=42.56 Aligned_cols=57 Identities=19% Similarity=0.130 Sum_probs=40.8
Q ss_pred CCCCeEEEcCcEEEEEEecCC-CC--eEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHH
Q psy10349 197 ERPNFHVMKKARVLKVLIDPN-TK--RVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLL 254 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~-~~--~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lL 254 (517)
++.+.+|++++.|++|+.+.+ ++ +++||++.+++....+.+ +.||++++.-...+||
T Consensus 306 ~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~a-D~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 306 TDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKA-DAYVAACDVPGIKRLL 365 (569)
T ss_pred HHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEEC-CEEEECCCHHHHHHhC
Confidence 466889999999999999742 22 589999853344445677 5688888866555544
No 117
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=65.17 E-value=7.7 Score=41.15 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=44.7
Q ss_pred hhhhhcccCCCCCeE--EEcCcEEEEEEecCCCCeEEEEEEEeC-CeEEEEEecceEEEecCCcCcHHHHHHcCC
Q psy10349 188 SQAFLRPIVERPNFH--VMKKARVLKVLIDPNTKRVFGVEFMKN-NKKRVVYAKKEVVLSAGAFFSPHLLLLSGI 259 (517)
Q Consensus 188 ~~~~l~~~~~~~nl~--i~~~~~V~ri~~~~~~~~a~gV~~~~~-g~~~~v~a~keVIlaaGai~tp~lLl~SGI 259 (517)
...||...+++-++. |..+++|++|..+ +++. -|+.... +...+... +.||||.|....|++.-..|+
T Consensus 113 v~~YL~~~a~~fgl~~~I~~~t~V~~V~~~--~~~w-~V~~~~~~~~~~~~~~-d~VIvAtG~~~~P~~P~ipG~ 183 (461)
T PLN02172 113 VLAYLQDFAREFKIEEMVRFETEVVRVEPV--DGKW-RVQSKNSGGFSKDEIF-DAVVVCNGHYTEPNVAHIPGI 183 (461)
T ss_pred HHHHHHHHHHHcCCcceEEecCEEEEEeec--CCeE-EEEEEcCCCceEEEEc-CEEEEeccCCCCCcCCCCCCc
Confidence 334776655555666 9999999999765 2322 2333332 23334556 469999999999998876664
No 118
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.66 E-value=2.6 Score=45.13 Aligned_cols=55 Identities=20% Similarity=0.191 Sum_probs=36.2
Q ss_pred ccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-CCeEEEEEecceEEEecCCcCcHHHHHH
Q psy10349 194 PIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-NNKKRVVYAKKEVVLSAGAFFSPHLLLL 256 (517)
Q Consensus 194 ~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-~g~~~~v~a~keVIlaaGai~tp~lLl~ 256 (517)
..+++.+.+|.+++.|++|+.+ +++ |+.+.. ++ ..+.+ +.||.++.. ..+..|..
T Consensus 232 ~~~~~~Gg~I~~~~~V~~I~v~--~g~--g~~~~~~~g--~~~~a-d~vv~~~~~-~~~~~l~~ 287 (487)
T COG1233 232 ELAREHGGEIRTGAEVSQILVE--GGK--GVGVRTSDG--ENIEA-DAVVSNADP-ALLARLLG 287 (487)
T ss_pred HHHHHcCCEEECCCceEEEEEe--CCc--ceEEecccc--ceecc-ceeEecCch-hhhhhhhh
Confidence 3345678999999999999998 456 444443 34 56777 446665555 55544443
No 119
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=63.41 E-value=17 Score=37.63 Aligned_cols=57 Identities=23% Similarity=0.216 Sum_probs=38.2
Q ss_pred hhhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcC
Q psy10349 189 QAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFF 249 (517)
Q Consensus 189 ~~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~ 249 (517)
..++..+.+.+++++..++.|++|..++ +.+ .|++..++...++++ +-||.|-|+--
T Consensus 125 ~~L~~~~~~~~~v~i~~~~~v~~v~~~~--~~~-~v~~~~~~~~~~i~a-dlvIgADG~~S 181 (415)
T PRK07364 125 EALQEFLQSCPNITWLCPAEVVSVEYQQ--DAA-TVTLEIEGKQQTLQS-KLVVAADGARS 181 (415)
T ss_pred HHHHHHHhcCCCcEEEcCCeeEEEEecC--Cee-EEEEccCCcceEEee-eEEEEeCCCCc
Confidence 3333334445789999999999997663 222 355554455567889 57888888633
No 120
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=63.29 E-value=20 Score=36.00 Aligned_cols=59 Identities=19% Similarity=0.264 Sum_probs=49.4
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcCcHHHHHHc
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFSPHLLLLS 257 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~tp~lLl~S 257 (517)
+.-+|++|++++.-+.|.=| |.+++|.+|.+ +|+.+.+.-. .|++--|-+-+..+|.-+
T Consensus 400 ~sl~Nv~ii~na~Ttei~Gd--g~kV~Gl~Y~dr~sge~~~l~Le-GvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 400 RSLPNVTIITNAQTTEVKGD--GDKVTGLEYRDRVSGEEHHLELE-GVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred hcCCCcEEEecceeeEEecC--CceecceEEEeccCCceeEEEee-eeEEEEecccChhHhhch
Confidence 45689999999999999766 67999999984 6788887764 599999999999998755
No 121
>PLN02985 squalene monooxygenase
Probab=62.70 E-value=19 Score=38.84 Aligned_cols=57 Identities=14% Similarity=0.237 Sum_probs=39.4
Q ss_pred hhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-CCeEEEEEecceEEEecCCcCcH
Q psy10349 191 FLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-NNKKRVVYAKKEVVLSAGAFFSP 251 (517)
Q Consensus 191 ~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-~g~~~~v~a~keVIlaaGai~tp 251 (517)
++..+.+.+|+++..+ +|+.+..+ +++++||++.. +|+..+++| +-||.|.|..-.-
T Consensus 153 L~~~a~~~~~V~i~~g-tvv~li~~--~~~v~gV~~~~~dG~~~~~~A-dLVVgADG~~S~v 210 (514)
T PLN02985 153 LRQKASSLPNVRLEEG-TVKSLIEE--KGVIKGVTYKNSAGEETTALA-PLTVVCDGCYSNL 210 (514)
T ss_pred HHHHHHhCCCeEEEee-eEEEEEEc--CCEEEEEEEEcCCCCEEEEEC-CEEEECCCCchHH
Confidence 3333445679999855 67777665 45788999874 677778888 5788888864433
No 122
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=62.05 E-value=3.3 Score=43.49 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.4
Q ss_pred CchhccccccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
|+++|..|++ .|.+|+|||++...
T Consensus 17 G~~aA~~La~-~G~~V~llEr~~~~ 40 (428)
T PRK10157 17 GSVAALVLAR-EGAQVLVIERGNSA 40 (428)
T ss_pred HHHHHHHHHh-CCCeEEEEEcCCCC
Confidence 6889999999 89999999999753
No 123
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=61.23 E-value=20 Score=36.70 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=34.2
Q ss_pred ccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHH
Q psy10349 194 PIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLL 254 (517)
Q Consensus 194 ~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lL 254 (517)
....+ +++|+.++.|+.|..+ +++ ..|+. .+|. .++| +.||+|+|+. ++.|+
T Consensus 143 ~~~~~-G~~i~~~~~V~~i~~~--~~~-~~v~t-~~g~--~~~a-~~vV~a~G~~-~~~l~ 194 (381)
T TIGR03197 143 AHAGI-RLTLHFNTEITSLERD--GEG-WQLLD-ANGE--VIAA-SVVVLANGAQ-AGQLA 194 (381)
T ss_pred hccCC-CcEEEeCCEEEEEEEc--CCe-EEEEe-CCCC--EEEc-CEEEEcCCcc-ccccc
Confidence 34456 8999999999999875 333 23332 2343 3678 5699999965 44443
No 124
>PRK07208 hypothetical protein; Provisional
Probab=60.63 E-value=15 Score=39.08 Aligned_cols=56 Identities=21% Similarity=0.109 Sum_probs=37.8
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-CCeEEEEEecceEEEecCCcCcHHHH
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-NNKKRVVYAKKEVVLSAGAFFSPHLL 254 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-~g~~~~v~a~keVIlaaGai~tp~lL 254 (517)
...+.+|++++.|++|..+++ +.+++|.+.. +|+..++.| +.||+++-.-.+..+|
T Consensus 229 ~~~g~~i~~~~~V~~I~~~~~-~~v~~~~~~~~~g~~~~~~a-d~VI~a~p~~~l~~~l 285 (479)
T PRK07208 229 EALGGKVVLNAKVVGLHHDGD-GRIAVVVVNDTDGTEETVTA-DQVISSMPLRELVAAL 285 (479)
T ss_pred HHcCCEEEeCCEEEEEEEcCC-cEEEEEEEEcCCCCEEEEEc-CEEEECCCHHHHHHhc
Confidence 345789999999999998742 4455665543 466567888 4588876654444443
No 125
>PRK10015 oxidoreductase; Provisional
Probab=59.90 E-value=3.9 Score=42.96 Aligned_cols=52 Identities=21% Similarity=0.353 Sum_probs=36.7
Q ss_pred hhhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCC
Q psy10349 189 QAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGA 247 (517)
Q Consensus 189 ~~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGa 247 (517)
..+|...++..+++|+.++.|+.|..+ ++++++|.. ++ .+++| +-||+|.|+
T Consensus 111 d~~L~~~a~~~Gv~i~~~~~V~~i~~~--~~~v~~v~~--~~--~~i~A-~~VI~AdG~ 162 (429)
T PRK10015 111 DPWLMEQAEQAGAQFIPGVRVDALVRE--GNKVTGVQA--GD--DILEA-NVVILADGV 162 (429)
T ss_pred HHHHHHHHHHcCCEEECCcEEEEEEEe--CCEEEEEEe--CC--eEEEC-CEEEEccCc
Confidence 335544344568999999999999876 356766653 22 36788 579999996
No 126
>PRK06126 hypothetical protein; Provisional
Probab=59.87 E-value=23 Score=38.37 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=35.6
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEE--eCCeEEEEEecceEEEecCCc
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFM--KNNKKRVVYAKKEVVLSAGAF 248 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~--~~g~~~~v~a~keVIlaaGai 248 (517)
.+.+|++|+.+++|++|..++ +.++ |.+. .+|+..++++ +-||.|.|+-
T Consensus 137 ~~~~~v~i~~~~~v~~i~~~~--~~v~-v~~~~~~~g~~~~i~a-d~vVgADG~~ 187 (545)
T PRK06126 137 AAQPGVTLRYGHRLTDFEQDA--DGVT-ATVEDLDGGESLTIRA-DYLVGCDGAR 187 (545)
T ss_pred HhCCCceEEeccEEEEEEECC--CeEE-EEEEECCCCcEEEEEE-EEEEecCCcc
Confidence 345789999999999998774 3444 4444 3577778999 5688888863
No 127
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=59.79 E-value=3.5 Score=40.79 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=20.8
Q ss_pred CchhccccccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
|+|+|..||+ .|++|||||+-+..
T Consensus 13 G~V~A~~a~~-~gk~VLIvekR~HI 36 (374)
T COG0562 13 GAVIAEVAAQ-LGKRVLIVEKRNHI 36 (374)
T ss_pred HHHHHHHHHH-cCCEEEEEeccccC
Confidence 7899998887 89999999997654
No 128
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=58.70 E-value=4 Score=43.77 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.6
Q ss_pred CchhccccccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
|+++|.+|++ +|++|+|||+-...
T Consensus 10 GL~aA~~La~-~G~~V~VlE~~~~~ 33 (502)
T TIGR02734 10 GLALAIRLAA-AGIPVTVVEQRDKP 33 (502)
T ss_pred HHHHHHHHHh-CCCcEEEEECCCCC
Confidence 6899999999 89999999998764
No 129
>KOG4254|consensus
Probab=57.79 E-value=7.2 Score=40.43 Aligned_cols=61 Identities=25% Similarity=0.303 Sum_probs=44.8
Q ss_pred hhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHc
Q psy10349 191 FLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLS 257 (517)
Q Consensus 191 ~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~S 257 (517)
.+.+.+++.+-.|.|++.|.+|++| +++|.||.+.+ |++ +++ |.||--|+-..|=.-|+--
T Consensus 269 aia~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~d-G~e--v~s-k~VvSNAt~~~Tf~kLlp~ 329 (561)
T KOG4254|consen 269 AIAEGAKRAGAEIFTKATVQSILLD--SGKAVGVRLAD-GTE--VRS-KIVVSNATPWDTFEKLLPG 329 (561)
T ss_pred HHHHHHHhccceeeehhhhhheecc--CCeEEEEEecC-CcE--EEe-eeeecCCchHHHHHHhCCC
Confidence 3445567889999999999999999 58999998874 543 455 6555558877776444433
No 130
>PRK10262 thioredoxin reductase; Provisional
Probab=57.69 E-value=51 Score=32.83 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=44.5
Q ss_pred ccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeC---CeEEEEEecceEEEecCCcCcHHHHHHcCC
Q psy10349 194 PIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKN---NKKRVVYAKKEVVLSAGAFFSPHLLLLSGI 259 (517)
Q Consensus 194 ~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~---g~~~~v~a~keVIlaaGai~tp~lLl~SGI 259 (517)
..++..++++++++.|++|.-+ +.++.+|++... +...++.+ ..||+|.|..-...|+ .+++
T Consensus 193 ~~l~~~gV~i~~~~~v~~v~~~--~~~~~~v~~~~~~~~~~~~~i~~-D~vv~a~G~~p~~~l~-~~~l 257 (321)
T PRK10262 193 DKVENGNIILHTNRTLEEVTGD--QMGVTGVRLRDTQNSDNIESLDV-AGLFVAIGHSPNTAIF-EGQL 257 (321)
T ss_pred hhccCCCeEEEeCCEEEEEEcC--CccEEEEEEEEcCCCCeEEEEEC-CEEEEEeCCccChhHh-hccc
Confidence 3445779999999999999643 346788887642 34567888 5799999987777654 3444
No 131
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=56.71 E-value=26 Score=37.30 Aligned_cols=59 Identities=19% Similarity=0.150 Sum_probs=42.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-----------CCeEEEEEecceEEEecCCcCc-HHHHHHcC
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-----------NNKKRVVYAKKEVVLSAGAFFS-PHLLLLSG 258 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-----------~g~~~~v~a~keVIlaaGai~t-p~lLl~SG 258 (517)
...++++++++.+++|.-+ ++++++|++.+ .+...++.+ ..||+|.|..-. ..||...|
T Consensus 340 ~~~GV~i~~~~~~~~i~~~--~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~-D~VI~A~G~~p~~~~l~~~~g 410 (471)
T PRK12810 340 HEEGVEREFNVQTKEFEGE--NGKVTGVKVVRTELGEGDFEPVEGSEFVLPA-DLVLLAMGFTGPEAGLLAQFG 410 (471)
T ss_pred HHcCCeEEeccCceEEEcc--CCEEEEEEEEEEEecCCCccccCCceEEEEC-CEEEECcCcCCCchhhccccC
Confidence 3568999999999999643 46899998752 245578888 479999995543 44655444
No 132
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=56.06 E-value=4.2 Score=41.78 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.9
Q ss_pred CchhccccccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
|+++|.+|++ .|.+|+|||+.+..
T Consensus 3 GL~aA~~L~~-~G~~v~vlEa~~r~ 26 (450)
T PF01593_consen 3 GLAAAYYLAK-AGYDVTVLEASDRV 26 (450)
T ss_dssp HHHHHHHHHH-TTTEEEEEESSSSS
T ss_pred HHHHHHHHHh-CCCCEEEEEcCCCC
Confidence 7899999999 89999999999765
No 133
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=55.65 E-value=32 Score=36.36 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=42.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--------C---------CeEEEEEecceEEEecCCcCcHHHHHHcC
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--------N---------NKKRVVYAKKEVVLSAGAFFSPHLLLLSG 258 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--------~---------g~~~~v~a~keVIlaaGai~tp~lLl~SG 258 (517)
...++++++++.+.+|.-++ ++++++|++.+ + +...++.+ ..||+|.|..-...+|...|
T Consensus 320 ~~~GV~~~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-D~Vi~AiG~~p~~~~l~~~g 396 (449)
T TIGR01316 320 EEEGVKFHFLCQPVEIIGDE-EGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEA-DAVIVAIGNGSNPIMAETTR 396 (449)
T ss_pred HhCCCEEEeccCcEEEEEcC-CCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEEC-CEEEECCCCCCCchhhhccC
Confidence 45699999999999997543 46888998751 2 23457888 47999999754444443334
No 134
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=55.38 E-value=2.9 Score=39.13 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=33.6
Q ss_pred CCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-----CC---eEEEEEecceEEEecC
Q psy10349 198 RPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-----NN---KKRVVYAKKEVVLSAG 246 (517)
Q Consensus 198 ~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-----~g---~~~~v~a~keVIlaaG 246 (517)
.+|++|+..+.|+.|.+.++ .|+.||.+.- .+ ...+++| |-||=|+|
T Consensus 108 ~aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHvDPl~i~a-k~ViDaTG 162 (230)
T PF01946_consen 108 DAGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHVDPLTIRA-KVVIDATG 162 (230)
T ss_dssp TTTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T-B-EEEEE-SEEEE---
T ss_pred cCCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCCCcceEEE-eEEEeCCC
Confidence 38999999999999998853 7999998851 22 2468999 55666666
No 135
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=54.55 E-value=19 Score=36.60 Aligned_cols=60 Identities=23% Similarity=0.331 Sum_probs=34.2
Q ss_pred hhcccCCCCCeEEEcCcEEEEEEecCCCCe-EEEEEEEe-CCeEEEEEecceEEEecCCcCcHHH
Q psy10349 191 FLRPIVERPNFHVMKKARVLKVLIDPNTKR-VFGVEFMK-NNKKRVVYAKKEVVLSAGAFFSPHL 253 (517)
Q Consensus 191 ~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~-a~gV~~~~-~g~~~~v~a~keVIlaaGai~tp~l 253 (517)
|+.-++++-.-.+..++.|++|..+.+++. ...|+..+ +|...++.|+ .|||+.| .+|.|
T Consensus 100 Yl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar-~vVla~G--~~P~i 161 (341)
T PF13434_consen 100 YLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRAR-NVVLATG--GQPRI 161 (341)
T ss_dssp HHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEES-EEEE------EE--
T ss_pred HHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeC-eEEECcC--CCCCC
Confidence 554333433334788999999998754332 33444443 6778899995 5999999 67765
No 136
>PRK10015 oxidoreductase; Provisional
Probab=52.46 E-value=23 Score=37.19 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.8
Q ss_pred CchhccccccCCCCeEEEEcccCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDE 24 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~ 24 (517)
|+++|..||+ .|.+|+|||++..
T Consensus 17 G~~aA~~LA~-~G~~VlliEr~~~ 39 (429)
T PRK10015 17 GSVAALVMAR-AGLDVLVIERGDS 39 (429)
T ss_pred HHHHHHHHHh-CCCeEEEEecCCC
Confidence 6889999999 8999999999964
No 137
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=52.22 E-value=5.6 Score=42.54 Aligned_cols=24 Identities=33% Similarity=0.250 Sum_probs=21.4
Q ss_pred CchhccccccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
|+++|..||+ +|++|+|||+....
T Consensus 12 Gl~aA~~La~-~G~~V~vlE~~~~~ 35 (493)
T TIGR02730 12 GLVTATQLAV-KGAKVLVLERYLIP 35 (493)
T ss_pred HHHHHHHHHH-CCCcEEEEECCCCC
Confidence 6889999999 99999999998654
No 138
>PRK12831 putative oxidoreductase; Provisional
Probab=51.97 E-value=43 Score=35.53 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=41.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-----------------CCeEEEEEecceEEEecCCcCcHHHH
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-----------------NNKKRVVYAKKEVVLSAGAFFSPHLL 254 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-----------------~g~~~~v~a~keVIlaaGai~tp~lL 254 (517)
...+++|++++.+.+|..++ ++++++|++.. +|...++.+ ..||+|.|..-...+|
T Consensus 329 ~~eGV~i~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~-D~Vi~AiG~~p~~~~~ 401 (464)
T PRK12831 329 KEEGVIFDLLTNPVEILGDE-NGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEV-DTVIMSLGTSPNPLIS 401 (464)
T ss_pred HHcCCEEEecccceEEEecC-CCeEEEEEEEEEEecCcCCCCCccceecCCceEEEEC-CEEEECCCCCCChhhh
Confidence 35689999999999997654 46899998751 234457888 4799999976554444
No 139
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=51.77 E-value=40 Score=35.75 Aligned_cols=67 Identities=10% Similarity=0.253 Sum_probs=48.0
Q ss_pred cccchhhhhhccc---CCCCCeEEEcCcEEEEEEecCC--CCeEEEEEEEeCCeEEE--EEecceEEEecCCcC
Q psy10349 183 RRFSASQAFLRPI---VERPNFHVMKKARVLKVLIDPN--TKRVFGVEFMKNNKKRV--VYAKKEVVLSAGAFF 249 (517)
Q Consensus 183 ~r~s~~~~~l~~~---~~~~nl~i~~~~~V~ri~~~~~--~~~a~gV~~~~~g~~~~--v~a~keVIlaaGai~ 249 (517)
.|...+.+.+.|+ ++..++++..+++|+.|.++.+ ..+|+++++.++|+..+ +....-||+.-|.+-
T Consensus 201 T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 201 TKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred CccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccc
Confidence 3444555555553 3567999999999999999743 34688888887776554 455678999888763
No 140
>PRK07233 hypothetical protein; Provisional
Probab=51.64 E-value=15 Score=38.11 Aligned_cols=51 Identities=24% Similarity=0.171 Sum_probs=36.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHH
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLL 254 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lL 254 (517)
+..+.+|.+++.|++|..+ ++++++|. .+++ ++.++ .||+|+..-..++||
T Consensus 209 ~~~g~~v~~~~~V~~i~~~--~~~~~~~~--~~~~--~~~ad-~vI~a~p~~~~~~ll 259 (434)
T PRK07233 209 EARGGEIRLGTPVTSVVID--GGGVTGVE--VDGE--EEDFD-AVISTAPPPILARLV 259 (434)
T ss_pred HhcCceEEeCCCeeEEEEc--CCceEEEE--eCCc--eEECC-EEEECCCHHHHHhhc
Confidence 4457899999999999876 34565554 2343 47774 699999876565544
No 141
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=51.29 E-value=53 Score=35.39 Aligned_cols=55 Identities=16% Similarity=0.329 Sum_probs=43.5
Q ss_pred CCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcCcHHHHH
Q psy10349 198 RPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFFSPHLLL 255 (517)
Q Consensus 198 ~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~tp~lLl 255 (517)
+.|++|++++.|++|.-+ ++++++|++.. +++..++.+ ..||+|.|..-...+|.
T Consensus 400 ~~gV~i~~~~~v~~i~~~--~~~v~~v~~~~~~~~~~~~i~~-D~vi~a~G~~Pn~~~l~ 456 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGD--GDKVTGIRYQDRNSGEEKQLDL-DGVFVQIGLVPNTEWLK 456 (515)
T ss_pred CCCCEEEECCeeEEEEcC--CCEEEEEEEEECCCCcEEEEEc-CEEEEEeCCcCCchHHh
Confidence 469999999999999644 46788888864 456667888 47999999888777764
No 142
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=50.90 E-value=14 Score=39.39 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.9
Q ss_pred CchhccccccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
|+++|..||. +|++|+|||+-...
T Consensus 15 GL~aAa~LA~-~G~~V~VlE~~~~~ 38 (487)
T COG1233 15 GLAAAALLAR-AGLKVTVLEKNDRV 38 (487)
T ss_pred HHHHHHHHHh-CCCEEEEEEecCCC
Confidence 6899999999 99999999976543
No 143
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=50.50 E-value=6.7 Score=40.34 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.1
Q ss_pred CchhccccccCCCCeEEEEcccCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDE 24 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~ 24 (517)
|+++|.+|++ .|.+|+|||+...
T Consensus 13 GlsaA~~La~-~G~~V~viEk~~~ 35 (377)
T TIGR00031 13 GIVLANILAQ-LNKRVLVVEKRNH 35 (377)
T ss_pred HHHHHHHHHh-CCCeEEEEecCCC
Confidence 6889999998 8999999999643
No 144
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=49.63 E-value=6.7 Score=38.00 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.4
Q ss_pred CchhccccccCCCCeEEEEcccCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDE 24 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~ 24 (517)
|+.+|.+|++ .|.+|+|||++..
T Consensus 33 GL~aA~~la~-~G~~V~vlEk~~~ 55 (254)
T TIGR00292 33 GLTAAYYLAK-NGLKVCVLERSLA 55 (254)
T ss_pred HHHHHHHHHH-CCCcEEEEecCCC
Confidence 6788999999 8999999999963
No 145
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=49.27 E-value=34 Score=33.12 Aligned_cols=52 Identities=25% Similarity=0.157 Sum_probs=34.2
Q ss_pred hhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCc
Q psy10349 191 FLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAF 248 (517)
Q Consensus 191 ~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai 248 (517)
+|.....+.+++++.++.|++|..++ +.+ .|.+. ....++++ +-||+|.|+-
T Consensus 96 ~l~~~~~~~gv~~~~~~~v~~~~~~~--~~~-~~~~~--~~~~~~~a-~~vv~a~G~~ 147 (295)
T TIGR02032 96 QLAERAQEAGAELRLGTTVLDVEIHD--DRV-VVIVR--GGEGTVTA-KIVIGADGSR 147 (295)
T ss_pred HHHHHHHHcCCEEEeCcEEeeEEEeC--CEE-EEEEc--CccEEEEe-CEEEECCCcc
Confidence 34343445689999999999998874 332 22222 22346788 5799999965
No 146
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=48.39 E-value=33 Score=36.33 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=38.5
Q ss_pred ccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEE-eCCeEEEEEecceEEEecCCcCcHHH
Q psy10349 194 PIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFM-KNNKKRVVYAKKEVVLSAGAFFSPHL 253 (517)
Q Consensus 194 ~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~-~~g~~~~v~a~keVIlaaGai~tp~l 253 (517)
..+++.+++|++++.|++|.-+ ++.+ .|.+. .+|+..++.+ ..||+|.|..-...+
T Consensus 221 ~~l~~~gV~i~~~~~v~~i~~~--~~~~-~v~~~~~~g~~~~i~~-D~vi~a~G~~pn~~~ 277 (466)
T PRK07818 221 KQYKKLGVKILTGTKVESIDDN--GSKV-TVTVSKKDGKAQELEA-DKVLQAIGFAPRVEG 277 (466)
T ss_pred HHHHHCCCEEEECCEEEEEEEe--CCeE-EEEEEecCCCeEEEEe-CEEEECcCcccCCCC
Confidence 3345669999999999999644 2332 34444 3566567888 479999997665554
No 147
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=47.41 E-value=7.6 Score=41.47 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.3
Q ss_pred CchhccccccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
|+++|.+|++ .|++|+|||+....
T Consensus 13 GL~aa~~La~-~G~~v~vlE~~~~~ 36 (492)
T TIGR02733 13 GLTAAALLAK-RGYRVTLLEQHAQP 36 (492)
T ss_pred HHHHHHHHHH-CCCeEEEEecCCCC
Confidence 6889999999 99999999988654
No 148
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=47.38 E-value=7.9 Score=37.69 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.2
Q ss_pred CchhccccccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
|+.+|..|++ .|.+|+|||+....
T Consensus 12 Gl~~A~~l~~-~g~~v~vie~~~~~ 35 (295)
T TIGR02032 12 GASAAYRLAD-KGLRVLLLEKKSFP 35 (295)
T ss_pred HHHHHHHHHH-CCCeEEEEeccCCC
Confidence 6789999998 89999999999743
No 149
>PLN02268 probable polyamine oxidase
Probab=47.31 E-value=8 Score=40.51 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.5
Q ss_pred CchhccccccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
|+.+|.+|.+ .|++|+||||..+.
T Consensus 12 GL~aA~~L~~-~g~~v~vlEa~~r~ 35 (435)
T PLN02268 12 GIAAARALHD-ASFKVTLLESRDRI 35 (435)
T ss_pred HHHHHHHHHh-CCCeEEEEeCCCCC
Confidence 6889999998 89999999998765
No 150
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=47.23 E-value=7 Score=41.00 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=18.2
Q ss_pred CchhccccccCCCCeEEEEcccCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDE 24 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~ 24 (517)
|+.+|..+|+ .|.||||||+++.
T Consensus 11 G~~AAi~AAr-~G~~VlLiE~~~~ 33 (428)
T PF12831_consen 11 GVAAAIAAAR-AGAKVLLIEKGGF 33 (428)
T ss_dssp HHHHHHHHHH-TTS-EEEE-SSSS
T ss_pred HHHHHHHHHH-CCCEEEEEECCcc
Confidence 6788888888 8999999999875
No 151
>KOG1298|consensus
Probab=47.18 E-value=8.2 Score=39.22 Aligned_cols=52 Identities=21% Similarity=0.325 Sum_probs=39.3
Q ss_pred cCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-CCeEEEEEecceEEEecCCcCc
Q psy10349 195 IVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-NNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 195 ~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-~g~~~~v~a~keVIlaaGai~t 250 (517)
+...+|+++.- .+|..|+-+ .+.+.||.|.. .|+..+.+| .--|+|-|.+-.
T Consensus 157 a~slpNV~~ee-GtV~sLlee--~gvvkGV~yk~k~gee~~~~A-pLTvVCDGcfSn 209 (509)
T KOG1298|consen 157 AASLPNVRLEE-GTVKSLLEE--EGVVKGVTYKNKEGEEVEAFA-PLTVVCDGCFSN 209 (509)
T ss_pred HhcCCCeEEee-eeHHHHHhc--cCeEEeEEEecCCCceEEEec-ceEEEecchhHH
Confidence 34578988654 557777666 46999999984 677788899 579999997743
No 152
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=46.23 E-value=48 Score=35.23 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=42.0
Q ss_pred CCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-----------------CCeEEEEEecceEEEecCCcCc-HHHHHHcC
Q psy10349 198 RPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-----------------NNKKRVVYAKKEVVLSAGAFFS-PHLLLLSG 258 (517)
Q Consensus 198 ~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-----------------~g~~~~v~a~keVIlaaGai~t-p~lLl~SG 258 (517)
..++++++++.+++|..++ ++++++|++.. .++..++.+. .||+|.|..-. ..+|..+|
T Consensus 332 ~~GV~~~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D-~Vi~a~G~~p~~~~~~~~~g 408 (467)
T TIGR01318 332 EEGVEFLFNVQPVYIECDE-DGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPAD-VVIMAFGFQPHAMPWLAGHG 408 (467)
T ss_pred hcCCEEEecCCcEEEEECC-CCeEEEEEEEEEEecccCCCCCccceecCCceEEEECC-EEEECCcCCCCccccccccC
Confidence 5689999999999997654 46798888741 1345678884 69999996644 33444444
No 153
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=45.16 E-value=9.2 Score=37.08 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.8
Q ss_pred CchhccccccCCCCeEEEEcccC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGD 23 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~ 23 (517)
|+.+|.+|++ +|.+|+|||+..
T Consensus 37 Gl~AA~~la~-~G~~V~liEk~~ 58 (257)
T PRK04176 37 GLTAAYYLAK-AGLKVAVFERKL 58 (257)
T ss_pred HHHHHHHHHh-CCCeEEEEecCC
Confidence 6788999998 999999999875
No 154
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=43.75 E-value=40 Score=34.16 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=28.7
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecC
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAG 246 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaG 246 (517)
.+..++|+.++.|+.+..++++ -.-+.+.+ .++..++.+. .||||+|
T Consensus 290 g~~~~~l~~~~~v~~~~~~~~~--~~~l~~~~~~~~~~~~~~~D-~VilATG 338 (341)
T PF13434_consen 290 GRGRLRLLPNTEVTSAEQDGDG--GVRLTLRHRQTGEEETLEVD-AVILATG 338 (341)
T ss_dssp T---SEEETTEEEEEEEEES-S--SEEEEEEETTT--EEEEEES-EEEE---
T ss_pred CCCCeEEeCCCEEEEEEECCCC--EEEEEEEECCCCCeEEEecC-EEEEcCC
Confidence 4557999999999999887532 22344553 5777888884 7999998
No 155
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=43.72 E-value=50 Score=33.93 Aligned_cols=50 Identities=22% Similarity=0.133 Sum_probs=36.4
Q ss_pred cCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcH
Q psy10349 195 IVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSP 251 (517)
Q Consensus 195 ~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp 251 (517)
+.+.+|++|+.++.|+.+..++ ..++ |.+..+|+ +++| + +|++|=.++|.
T Consensus 114 ~~~~~~v~~~~~~~v~~~~~~~--~~v~-v~l~~dG~--~~~a-~-llVgADG~~S~ 163 (387)
T COG0654 114 ARALPNVTLRFGAEVEAVEQDG--DGVT-VTLSFDGE--TLDA-D-LLVGADGANSA 163 (387)
T ss_pred HhhCCCcEEEcCceEEEEEEcC--CceE-EEEcCCCc--EEec-C-EEEECCCCchH
Confidence 4457889999999999998874 4566 66654666 7888 4 55555556665
No 156
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=43.71 E-value=8.2 Score=40.04 Aligned_cols=58 Identities=14% Similarity=0.291 Sum_probs=36.1
Q ss_pred hhhhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-C-----CeEEEEEecceEEEecCC
Q psy10349 188 SQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-N-----NKKRVVYAKKEVVLSAGA 247 (517)
Q Consensus 188 ~~~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-~-----g~~~~v~a~keVIlaaGa 247 (517)
...+|...+.+.+++|+.++ |..|..........+|++.. + |+..+++| +-||.|.|+
T Consensus 95 ~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a-~~VIgADG~ 158 (398)
T TIGR02028 95 LDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEV-DAVIGADGA 158 (398)
T ss_pred HHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEe-CEEEECCCc
Confidence 33455554456688998775 77765432233455676653 2 55568899 568888885
No 157
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=43.44 E-value=10 Score=38.88 Aligned_cols=53 Identities=25% Similarity=0.350 Sum_probs=32.7
Q ss_pred hhhhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCc
Q psy10349 188 SQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAF 248 (517)
Q Consensus 188 ~~~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai 248 (517)
...++..+.+.+|++++ ++.|+.|..++ ..+ .|.+. +|. ++++ +-||.|.|+-
T Consensus 114 ~~~L~~~~~~~~~v~~~-~~~v~~i~~~~--~~~-~v~~~-~g~--~~~a-~~vI~adG~~ 166 (388)
T PRK07608 114 ERALWAALRFQPNLTWF-PARAQGLEVDP--DAA-TLTLA-DGQ--VLRA-DLVVGADGAH 166 (388)
T ss_pred HHHHHHHHHhCCCcEEE-cceeEEEEecC--CeE-EEEEC-CCC--EEEe-eEEEEeCCCC
Confidence 33343444445569999 99999987653 222 24332 343 5778 5688888863
No 158
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=43.30 E-value=8.2 Score=40.21 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=18.4
Q ss_pred CchhccccccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
|+++|..|++ .|.+|+|||++...
T Consensus 12 Gl~aA~~aa~-~g~~V~vlE~~~~~ 35 (409)
T PF03486_consen 12 GLMAAITAAE-KGARVLVLERNKRV 35 (409)
T ss_dssp HHHHHHHHHH-TT--EEEE-SSSSS
T ss_pred HHHHHHHHHh-CCCCEEEEeCCccc
Confidence 6789999999 89999999999754
No 159
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=42.93 E-value=53 Score=34.67 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=37.2
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHH
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHL 253 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~l 253 (517)
+++.+++|++++.|++|.-++ +.+ .|++..++...++.+ ..||+|.|..-...+
T Consensus 223 l~~~gV~i~~~~~V~~i~~~~--~~v-~v~~~~gg~~~~i~~-D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 223 LKKRGIKIKTGAKAKKVEQTD--DGV-TVTLEDGGKEETLEA-DYVLVAVGRRPNTEN 276 (462)
T ss_pred HHHcCCEEEeCCEEEEEEEeC--CEE-EEEEEeCCeeEEEEe-CEEEEeeCCccCCCC
Confidence 345689999999999997552 222 244444455567888 479999997655544
No 160
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=42.68 E-value=41 Score=35.54 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=36.8
Q ss_pred ccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHH
Q psy10349 194 PIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPH 252 (517)
Q Consensus 194 ~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~ 252 (517)
..++..+++|++++.|++|.-++ + ...|++..++...++.+ +.||+|.|..-...
T Consensus 215 ~~l~~~gV~i~~~~~V~~i~~~~--~-~~~v~~~~~~~~~~i~~-D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 215 EALAEEGIEVVTSAQVKAVSVRG--G-GKIITVEKPGGQGEVEA-DELLVATGRRPNTD 269 (463)
T ss_pred HHHHHcCCEEEcCcEEEEEEEcC--C-EEEEEEEeCCCceEEEe-CEEEEeECCCcCCC
Confidence 33456789999999999997642 2 23455543333456788 46999999654444
No 161
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=42.47 E-value=8.9 Score=39.55 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=33.1
Q ss_pred hhhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-----CCeEEEEEecceEEEecCC
Q psy10349 189 QAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-----NNKKRVVYAKKEVVLSAGA 247 (517)
Q Consensus 189 ~~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-----~g~~~~v~a~keVIlaaGa 247 (517)
..+|...+.+.+++|+.. .|++|..++ +.+ .|.+.. +++..+++| +-||.|.|+
T Consensus 95 d~~L~~~a~~~G~~v~~~-~v~~v~~~~--~~~-~v~~~~~~~~~~~~~~~i~a-~~VI~AdG~ 153 (388)
T TIGR02023 95 DSYLRERAQKAGAELIHG-LFLKLERDR--DGV-TLTYRTPKKGAGGEKGSVEA-DVVIGADGA 153 (388)
T ss_pred HHHHHHHHHhCCCEEEee-EEEEEEEcC--CeE-EEEEEeccccCCCcceEEEe-CEEEECCCC
Confidence 345544333457888754 688887663 333 455553 344567889 568888885
No 162
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=42.01 E-value=48 Score=34.93 Aligned_cols=52 Identities=13% Similarity=0.257 Sum_probs=36.3
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHH
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPH 252 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~ 252 (517)
+++.+++|++++.|++|..++ +.+. |+. .+|...++.+ ..||+|.|..-...
T Consensus 221 l~~~gi~i~~~~~v~~i~~~~--~~v~-v~~-~~g~~~~i~~-D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 221 LKKKGVKILTNTKVTAVEKND--DQVV-YEN-KGGETETLTG-EKVLVAVGRKPNTE 272 (461)
T ss_pred HHHcCCEEEeCCEEEEEEEeC--CEEE-EEE-eCCcEEEEEe-CEEEEecCCcccCC
Confidence 345689999999999997652 3333 332 3454456778 46999999776665
No 163
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=41.94 E-value=80 Score=34.16 Aligned_cols=55 Identities=24% Similarity=0.181 Sum_probs=38.6
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-CCeEEEEEecceEEEecCCcCcHHHHH
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-NNKKRVVYAKKEVVLSAGAFFSPHLLL 255 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-~g~~~~v~a~keVIlaaGai~tp~lLl 255 (517)
+.++++|+.+++|+.|..+++ .+ .|++.. +|+..++++ +-||-|-|+--+.|=++
T Consensus 125 ~~~gv~v~~g~~v~~i~~~~~--~v-~v~~~~~~G~~~~i~a-d~vVgADG~~S~vR~~l 180 (538)
T PRK06183 125 RFPHVRVRFGHEVTALTQDDD--GV-TVTLTDADGQRETVRA-RYVVGCDGANSFVRRTL 180 (538)
T ss_pred hCCCcEEEcCCEEEEEEEcCC--eE-EEEEEcCCCCEEEEEE-EEEEecCCCchhHHHHc
Confidence 446899999999999987743 33 345543 676778999 56888888755554333
No 164
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=41.90 E-value=14 Score=40.35 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=19.7
Q ss_pred CchhccccccCCCCeEEEEcccCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDE 24 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~ 24 (517)
|+++|.+|++ .|.+|+|||+.+.
T Consensus 19 G~~aA~~aa~-~G~~v~llEk~~~ 41 (557)
T PRK07843 19 GMVAALTAAH-RGLSTVVVEKAPH 41 (557)
T ss_pred HHHHHHHHHH-CCCCEEEEeCCCC
Confidence 5678899998 8999999999863
No 165
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=41.62 E-value=11 Score=38.64 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.1
Q ss_pred CchhccccccCCCCeEEEEcccCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDE 24 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~ 24 (517)
|+.+|.+|++ .|.+|+|||+.+.
T Consensus 11 Gl~~A~~la~-~g~~v~liE~~~~ 33 (388)
T TIGR01790 11 GLAIALELAR-PGLRVQLIEPHPP 33 (388)
T ss_pred HHHHHHHHHh-CCCeEEEEccCCC
Confidence 6788999998 8999999999853
No 166
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=41.30 E-value=28 Score=37.28 Aligned_cols=52 Identities=29% Similarity=0.539 Sum_probs=35.6
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHH
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHL 253 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~l 253 (517)
.+.+||+|+-++ |..|+.++ +.++.||... +|. .+.| |.|||++|+|-.-+|
T Consensus 111 e~~~NL~l~q~~-v~dli~e~-~~~v~GV~t~-~G~--~~~a-~aVVlTTGTFL~G~I 162 (621)
T COG0445 111 ENQPNLHLLQGE-VEDLIVEE-GQRVVGVVTA-DGP--EFHA-KAVVLTTGTFLRGKI 162 (621)
T ss_pred hcCCCceehHhh-hHHHhhcC-CCeEEEEEeC-CCC--eeec-CEEEEeecccccceE
Confidence 467899988755 66776653 3478888664 354 3556 569999998754443
No 167
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=40.90 E-value=12 Score=38.10 Aligned_cols=54 Identities=24% Similarity=0.323 Sum_probs=34.3
Q ss_pred hhhhhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCC
Q psy10349 187 ASQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGA 247 (517)
Q Consensus 187 ~~~~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGa 247 (517)
....++..+.+.+|++|+.++.|++|..++ +.++ |++ .+|+ ++.+ +-||.|.|+
T Consensus 108 l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~-v~~-~~g~--~~~~-~~vi~adG~ 161 (385)
T TIGR01988 108 LQQALWERLQEYPNVTLLCPARVVELPRHS--DHVE-LTL-DDGQ--QLRA-RLLVGADGA 161 (385)
T ss_pred HHHHHHHHHHhCCCcEEecCCeEEEEEecC--CeeE-EEE-CCCC--EEEe-eEEEEeCCC
Confidence 344445445555679999999999998763 3332 333 3454 3667 567777775
No 168
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=40.47 E-value=54 Score=33.75 Aligned_cols=51 Identities=8% Similarity=-0.036 Sum_probs=34.6
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcH
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSP 251 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp 251 (517)
...+++|..+++|++|.-.+ .....|++..+|+..++++ + +||.|-.++|.
T Consensus 114 ~~~gv~v~~~~~v~~i~~~~--~~~~~V~~~~~G~~~~i~a-d-~vVgADG~~S~ 164 (392)
T PRK08243 114 LAAGGPIRFEASDVALHDFD--SDRPYVTYEKDGEEHRLDC-D-FIAGCDGFHGV 164 (392)
T ss_pred HhCCCeEEEeeeEEEEEecC--CCceEEEEEcCCeEEEEEe-C-EEEECCCCCCc
Confidence 34689999999999986421 2234566655787788999 4 55555556663
No 169
>PRK06370 mercuric reductase; Validated
Probab=40.18 E-value=56 Score=34.55 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=36.6
Q ss_pred ccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHH
Q psy10349 194 PIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPH 252 (517)
Q Consensus 194 ~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~ 252 (517)
..+++.+++|++++.|.+|.-++ +. ..|++...+...++.+. .||+|.|.--...
T Consensus 220 ~~l~~~GV~i~~~~~V~~i~~~~--~~-~~v~~~~~~~~~~i~~D-~Vi~A~G~~pn~~ 274 (463)
T PRK06370 220 EILEREGIDVRLNAECIRVERDG--DG-IAVGLDCNGGAPEITGS-HILVAVGRVPNTD 274 (463)
T ss_pred HHHHhCCCEEEeCCEEEEEEEcC--CE-EEEEEEeCCCceEEEeC-EEEECcCCCcCCC
Confidence 33456789999999999997552 22 23444433334567784 6999999765554
No 170
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=40.02 E-value=13 Score=38.58 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.5
Q ss_pred CchhccccccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
|+++|..|++ .|.+|+|||+.+..
T Consensus 30 Gl~~A~~L~~-~G~~v~v~E~~~~~ 53 (415)
T PRK07364 30 GLTLAAALKD-SGLRIALIEAQPAE 53 (415)
T ss_pred HHHHHHHHhc-CCCEEEEEecCCcc
Confidence 6789999999 89999999999754
No 171
>PRK07233 hypothetical protein; Provisional
Probab=39.60 E-value=11 Score=39.10 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.6
Q ss_pred CchhccccccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
|+++|..|++ .|++|+|||+....
T Consensus 11 GL~aA~~L~~-~G~~v~vlE~~~~~ 34 (434)
T PRK07233 11 GLAAAYRLAK-RGHEVTVFEADDQL 34 (434)
T ss_pred HHHHHHHHHH-CCCcEEEEEeCCCC
Confidence 6889999999 89999999999765
No 172
>PRK11445 putative oxidoreductase; Provisional
Probab=39.44 E-value=92 Score=31.48 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=37.7
Q ss_pred hhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcH
Q psy10349 191 FLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSP 251 (517)
Q Consensus 191 ~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp 251 (517)
+|... ...+++++.++.|+.|..+++ . ..|.+..+|+..++++ +-||.|.|+--..
T Consensus 104 ~L~~~-~~~gv~v~~~~~v~~i~~~~~--~-~~v~~~~~g~~~~i~a-~~vV~AdG~~S~v 159 (351)
T PRK11445 104 WLKSL-IPASVEVYHNSLCRKIWREDD--G-YHVIFRADGWEQHITA-RYLVGADGANSMV 159 (351)
T ss_pred HHHHH-HhcCCEEEcCCEEEEEEEcCC--E-EEEEEecCCcEEEEEe-CEEEECCCCCcHH
Confidence 44443 245799999999999976632 2 2355545676667888 5688898865443
No 173
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=39.30 E-value=11 Score=39.46 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=20.3
Q ss_pred CchhccccccCCC--CeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPD--WKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g--~~VlvlEaG~~~ 25 (517)
|+++|.+|++ .| .+|+|||+.+..
T Consensus 12 GL~aA~~L~~-~G~~~~V~vlEa~~~~ 37 (451)
T PRK11883 12 GLSAAYRLHK-KGPDADITLLEASDRL 37 (451)
T ss_pred HHHHHHHHHH-hCCCCCEEEEEcCCCC
Confidence 6899999998 66 899999996543
No 174
>PLN02612 phytoene desaturase
Probab=39.19 E-value=34 Score=37.33 Aligned_cols=45 Identities=18% Similarity=0.108 Sum_probs=33.0
Q ss_pred CCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCC
Q psy10349 198 RPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGA 247 (517)
Q Consensus 198 ~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGa 247 (517)
+.+.+|.+++.|++|..+++ +++++|++. +|+ .+.+ +.||++...
T Consensus 320 ~~G~~I~l~~~V~~I~~~~~-g~v~~v~~~-~G~--~~~a-d~VI~a~p~ 364 (567)
T PLN02612 320 SLGGEVRLNSRIKKIELNDD-GTVKHFLLT-NGS--VVEG-DVYVSATPV 364 (567)
T ss_pred hcCCEEEeCCeeeEEEECCC-CcEEEEEEC-CCc--EEEC-CEEEECCCH
Confidence 35789999999999998653 567777774 454 4667 468887653
No 175
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=39.04 E-value=15 Score=37.82 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=20.6
Q ss_pred Cchhcccc--ccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRL--TENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rL--ae~~g~~VlvlEaG~~~ 25 (517)
|+.+|.+| +. .|.+|+|||..+..
T Consensus 11 GlslA~~l~~~~-~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 11 GLSLARRLADAR-PGLSVLLIDPKPKP 36 (374)
T ss_pred HHHHHHHHHhcC-CCCEEEEEcCCccc
Confidence 67899999 77 89999999998643
No 176
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=39.02 E-value=60 Score=34.01 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=41.5
Q ss_pred hhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHcCC
Q psy10349 191 FLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGI 259 (517)
Q Consensus 191 ~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~SGI 259 (517)
++...+++.+++|++++.|++|.-+ +++..|.. ++. ++.+ +.||+|+|..-...+|..+||
T Consensus 196 ~l~~~l~~~gI~v~~~~~v~~i~~~---~~~~~v~~--~~~--~i~~-d~vi~a~G~~p~~~~l~~~gl 256 (444)
T PRK09564 196 VMEEELRENGVELHLNEFVKSLIGE---DKVEGVVT--DKG--EYEA-DVVIVATGVKPNTEFLEDTGL 256 (444)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEecC---CcEEEEEe--CCC--EEEc-CEEEECcCCCcCHHHHHhcCc
Confidence 3333345668999999999999432 34444432 333 3777 479999998777778887776
No 177
>PRK08244 hypothetical protein; Provisional
Probab=38.98 E-value=61 Score=34.55 Aligned_cols=55 Identities=24% Similarity=0.169 Sum_probs=36.5
Q ss_pred hhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-CCeEEEEEecceEEEecCCcC
Q psy10349 190 AFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-NNKKRVVYAKKEVVLSAGAFF 249 (517)
Q Consensus 190 ~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-~g~~~~v~a~keVIlaaGai~ 249 (517)
..|...++..+++|+.+++|++|..++ ..+ .|.+.. +| ..++++ +-||.|.|+--
T Consensus 104 ~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v-~v~~~~~~g-~~~i~a-~~vVgADG~~S 159 (493)
T PRK08244 104 KVLEEHARSLGVEIFRGAEVLAVRQDG--DGV-EVVVRGPDG-LRTLTS-SYVVGADGAGS 159 (493)
T ss_pred HHHHHHHHHcCCeEEeCCEEEEEEEcC--CeE-EEEEEeCCc-cEEEEe-CEEEECCCCCh
Confidence 344443445589999999999997763 333 244443 34 457888 57999999743
No 178
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=38.81 E-value=66 Score=35.81 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=41.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-----------------CCeEEEEEecceEEEecCCcCc-HHHHHHcC
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-----------------NNKKRVVYAKKEVVLSAGAFFS-PHLLLLSG 258 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-----------------~g~~~~v~a~keVIlaaGai~t-p~lLl~SG 258 (517)
...++++++++.+.+|+.++ ++++++|++.. .|..+++.+ ..||+|.|.... ..+|..+|
T Consensus 517 ~~~Gv~~~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~-D~Vi~AiG~~p~~~~~~~~~g 594 (654)
T PRK12769 517 REEGANFEFNVQPVALELNE-QGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPA-DAVIMAFGFNPHGMPWLESHG 594 (654)
T ss_pred HHcCCeEEeccCcEEEEECC-CCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEEC-CEEEECccCCCCccccccccC
Confidence 45689999999999997654 46899998742 134567888 479999996543 33443343
No 179
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=38.79 E-value=48 Score=35.22 Aligned_cols=55 Identities=11% Similarity=0.227 Sum_probs=38.6
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-CCeEEEEEecceEEEecCCcCcHHHH
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-NNKKRVVYAKKEVVLSAGAFFSPHLL 254 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-~g~~~~v~a~keVIlaaGai~tp~lL 254 (517)
+++.+++|++++.|++|.-++ ..+ .|++.. +|+..++.+ ..||+|.|..-....|
T Consensus 234 l~~~gi~i~~~~~v~~i~~~~--~~v-~v~~~~~~g~~~~i~~-D~vl~a~G~~p~~~~l 289 (475)
T PRK06327 234 FTKQGLDIHLGVKIGEIKTGG--KGV-SVAYTDADGEAQTLEV-DKLIVSIGRVPNTDGL 289 (475)
T ss_pred HHHcCcEEEeCcEEEEEEEcC--CEE-EEEEEeCCCceeEEEc-CEEEEccCCccCCCCC
Confidence 345789999999999997652 332 355543 355567888 4799999987665544
No 180
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=38.63 E-value=12 Score=39.40 Aligned_cols=56 Identities=14% Similarity=0.046 Sum_probs=36.0
Q ss_pred CCCCeEEEcCcEEEEEEecCC--CCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHc
Q psy10349 197 ERPNFHVMKKARVLKVLIDPN--TKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLS 257 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~--~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~S 257 (517)
.+.+.++.++..|..|..+.. ..++.|+.+. +....+.+ ++--..+...++|.-.+
T Consensus 226 ~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~--~~~~e~~~---~~~~~~~~~v~~~~~~~ 283 (485)
T COG3349 226 PERGRKVHADYPVKELDLDGARGLAKVTGGDVT--GPEQEQQA---ALAVVDAFAVQRFKRDL 283 (485)
T ss_pred cccCceeeccceeeeeeccccccccceEeeeec--CcceEeee---hhhhhcccccchHhhcC
Confidence 345789999999999988752 2458888876 44333333 33334446667776555
No 181
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=38.51 E-value=11 Score=39.86 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.8
Q ss_pred CchhccccccCCCCeEEEEcccC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGD 23 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~ 23 (517)
|+++|..||+ .|.+|+|||+..
T Consensus 51 G~~aA~~LA~-~G~~VlllEr~~ 72 (450)
T PLN00093 51 GACAAETLAK-GGIETFLIERKL 72 (450)
T ss_pred HHHHHHHHHh-CCCcEEEEecCC
Confidence 6889999999 999999999964
No 182
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=38.09 E-value=61 Score=29.29 Aligned_cols=49 Identities=16% Similarity=0.305 Sum_probs=35.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeE----EEEEEEeCCeEEEEEecceEEEecCCc
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRV----FGVEFMKNNKKRVVYAKKEVVLSAGAF 248 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a----~gV~~~~~g~~~~v~a~keVIlaaGai 248 (517)
.+.+++++.++.|.+|... .+++ ..+.....+....+.+ +.||||.|+-
T Consensus 69 ~~~~v~~~~~~~v~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~-d~lviAtG~~ 121 (201)
T PF07992_consen 69 KNRGVEIRLNAKVVSIDPE--SKRVVCPAVTIQVVETGDGREIKY-DYLVIATGSR 121 (201)
T ss_dssp HHHTHEEEHHHTEEEEEES--TTEEEETCEEEEEEETTTEEEEEE-EEEEEESTEE
T ss_pred ccceEEEeecccccccccc--ccccccCcccceeeccCCceEecC-CeeeecCccc
Confidence 3578999999999999776 3432 2333344667788888 5699999943
No 183
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=38.01 E-value=12 Score=40.14 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.2
Q ss_pred CchhccccccCCCCeEEEEcccC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGD 23 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~ 23 (517)
|+.+|..||. .|.+|+|||++.
T Consensus 18 G~~~A~~la~-rG~~V~LlEk~d 39 (502)
T PRK13369 18 GAGIARDAAG-RGLKVLLCEKDD 39 (502)
T ss_pred HHHHHHHHHh-CCCcEEEEECCC
Confidence 6789999999 899999999995
No 184
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=37.65 E-value=76 Score=32.43 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=42.3
Q ss_pred ccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHcCCC
Q psy10349 194 PIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIG 260 (517)
Q Consensus 194 ~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~SGIG 260 (517)
..+++.++++.+++.|.+|..+. .. ..|++ .+|+ ++.+ +.||+|+|.--.+.|+..+|+.
T Consensus 191 ~~l~~~gV~i~~~~~v~~i~~~~--~~-~~v~~-~~g~--~i~~-D~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 191 HRLTEMGVHLLLKSQLQGLEKTD--SG-IRATL-DSGR--SIEV-DAVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred HHHHhCCCEEEECCeEEEEEccC--CE-EEEEE-cCCc--EEEC-CEEEECcCCCcchHHHHHCCCC
Confidence 33456689999999999997552 22 23443 3454 4677 5799999988888888888764
No 185
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=37.60 E-value=14 Score=37.98 Aligned_cols=55 Identities=24% Similarity=0.312 Sum_probs=34.7
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHcCC
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGI 259 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~SGI 259 (517)
.++.+++|..++.|++|..++ ..++ |++ .+|. ++++ +.||.|.|+ .| .+-...||
T Consensus 123 ~~~~gv~i~~~~~v~~i~~~~--~~v~-v~~-~~g~--~~~a-~~vV~AdG~-~S-~vr~~~g~ 177 (392)
T PRK08773 123 LHAAGVQLHCPARVVALEQDA--DRVR-LRL-DDGR--RLEA-ALAIAADGA-AS-TLRELAGL 177 (392)
T ss_pred HHhCCCEEEcCCeEEEEEecC--CeEE-EEE-CCCC--EEEe-CEEEEecCC-Cc-hHHHhhcC
Confidence 345689999999999998663 3332 333 2443 5677 568888886 34 34343343
No 186
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=37.39 E-value=13 Score=40.05 Aligned_cols=23 Identities=26% Similarity=0.292 Sum_probs=20.4
Q ss_pred CchhccccccCCCCeEEEEcccCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDE 24 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~ 24 (517)
|+.+|..||. .|.||+|||++..
T Consensus 18 G~~~A~~la~-rGl~V~LvEk~d~ 40 (508)
T PRK12266 18 GAGIARDAAG-RGLSVLLCEQDDL 40 (508)
T ss_pred HHHHHHHHHH-CCCeEEEEecCCC
Confidence 6789999999 8999999999843
No 187
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=37.20 E-value=74 Score=35.31 Aligned_cols=50 Identities=10% Similarity=0.095 Sum_probs=37.9
Q ss_pred CCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-----------------CCeEEEEEecceEEEecCCcC
Q psy10349 198 RPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-----------------NNKKRVVYAKKEVVLSAGAFF 249 (517)
Q Consensus 198 ~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-----------------~g~~~~v~a~keVIlaaGai~ 249 (517)
..++++++++.+++|..++ ++++++|++.+ .|..+++.+ ..||+|.|...
T Consensus 501 ~eGv~~~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~a-D~Vi~AiG~~p 567 (639)
T PRK12809 501 EEGVEFQFNVQPQYIACDE-DGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPA-DVLIMAFGFQA 567 (639)
T ss_pred HcCCeEEeccCCEEEEECC-CCeEEEEEEEEEEecCcCCCCCccceecCCceEEEEC-CEEEECcCCCC
Confidence 5689999999999997654 46899887631 134567888 47999999554
No 188
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=36.99 E-value=96 Score=32.52 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=34.8
Q ss_pred CCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHH
Q psy10349 198 RPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHL 253 (517)
Q Consensus 198 ~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~l 253 (517)
.-+.+|+.+++|..|++++ +.+.+|... +| .++.+ ++||||-|-=..-.+
T Consensus 185 ~~G~ei~f~t~VeDi~~~~--~~~~~v~~~-~g--~~i~~-~~vvlA~Grsg~dw~ 234 (486)
T COG2509 185 SLGGEIRFNTEVEDIEIED--NEVLGVKLT-KG--EEIEA-DYVVLAPGRSGRDWF 234 (486)
T ss_pred hcCcEEEeeeEEEEEEecC--CceEEEEcc-CC--cEEec-CEEEEccCcchHHHH
Confidence 3469999999999999984 345555443 33 35677 579999995444333
No 189
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=36.95 E-value=75 Score=32.34 Aligned_cols=54 Identities=24% Similarity=0.306 Sum_probs=33.9
Q ss_pred hhhhhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCC
Q psy10349 187 ASQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGA 247 (517)
Q Consensus 187 ~~~~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGa 247 (517)
....++..+.+.+|++++.+++|+.|..++ ..+ .|.+ .+|. +++| +.||.|.|+
T Consensus 107 l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~--~~~-~v~~-~~g~--~~~a-d~vV~AdG~ 160 (382)
T TIGR01984 107 LGQALLSRLALLTNIQLYCPARYKEIIRNQ--DYV-RVTL-DNGQ--QLRA-KLLIAADGA 160 (382)
T ss_pred HHHHHHHHHHhCCCcEEEcCCeEEEEEEcC--CeE-EEEE-CCCC--EEEe-eEEEEecCC
Confidence 333333333333699999999999998663 222 2333 3443 5778 578888884
No 190
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=36.81 E-value=24 Score=35.25 Aligned_cols=51 Identities=27% Similarity=0.198 Sum_probs=42.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcH
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSP 251 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp 251 (517)
++-+--++++-.|.+..+. +++++.|..+ +.....++| +++|||.|.+-|-
T Consensus 269 ~~~Gg~~m~Gd~V~~a~~~--~~~v~~i~tr-n~~diP~~a-~~~VLAsGsffsk 319 (421)
T COG3075 269 EQLGGLWMPGDEVKKATCK--GGRVTEIYTR-NHADIPLRA-DFYVLASGSFFSK 319 (421)
T ss_pred HHcCceEecCCceeeeeee--CCeEEEEEec-ccccCCCCh-hHeeeeccccccc
Confidence 4567789999999999988 6799988766 777788999 5899999997554
No 191
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=36.52 E-value=80 Score=37.08 Aligned_cols=61 Identities=21% Similarity=0.158 Sum_probs=47.9
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-CCeEEEEEecceEEEecCCcCcHHHHHHcCCC
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-NNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIG 260 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-~g~~~~v~a~keVIlaaGai~tp~lLl~SGIG 260 (517)
+++.+++|++++.|++|.-+ +++.+|++.. ++...++.+ ..||++.|..-...|+...|..
T Consensus 361 L~~~GV~i~~~~~v~~i~g~---~~v~~V~l~~~~g~~~~i~~-D~V~va~G~~Pnt~L~~~lg~~ 422 (985)
T TIGR01372 361 ARELGIEVLTGHVVAATEGG---KRVSGVAVARNGGAGQRLEA-DALAVSGGWTPVVHLFSQRGGK 422 (985)
T ss_pred HHHcCCEEEcCCeEEEEecC---CcEEEEEEEecCCceEEEEC-CEEEEcCCcCchhHHHHhcCCC
Confidence 35678999999999999532 4688888874 455567888 5799999999999998877643
No 192
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=36.43 E-value=14 Score=37.95 Aligned_cols=23 Identities=35% Similarity=0.758 Sum_probs=19.8
Q ss_pred CchhccccccC-CCCeEEEEcccC
Q psy10349 1 GCVVTNRLTEN-PDWKVLLLEAGD 23 (517)
Q Consensus 1 G~v~A~rLae~-~g~~VlvlEaG~ 23 (517)
|+.+|.+|++. +|.+|+|||+++
T Consensus 11 Gl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 11 GGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred HHHHHHHHHhcCCCCeEEEEeCCC
Confidence 67899999982 499999999986
No 193
>PRK09126 hypothetical protein; Provisional
Probab=35.80 E-value=14 Score=37.86 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=30.3
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCC
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGA 247 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGa 247 (517)
.+..+++|+.++.|+.+..++ +. ..|++ .+|+ ++++ +-||.|.|.
T Consensus 121 ~~~~g~~i~~~~~v~~~~~~~--~~-~~v~~-~~g~--~~~a-~~vI~AdG~ 165 (392)
T PRK09126 121 SQQDGIELLTGTRVTAVRTDD--DG-AQVTL-ANGR--RLTA-RLLVAADSR 165 (392)
T ss_pred hhCCCcEEEcCCeEEEEEEcC--Ce-EEEEE-cCCC--EEEe-CEEEEeCCC
Confidence 345789999999999997653 22 23444 3453 5778 557777775
No 194
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=35.56 E-value=17 Score=37.17 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.0
Q ss_pred CchhccccccCCC-CeEEEEcccCCCC
Q psy10349 1 GCVVTNRLTENPD-WKVLLLEAGDEEN 26 (517)
Q Consensus 1 G~v~A~rLae~~g-~~VlvlEaG~~~~ 26 (517)
|+++|..|++ .| .+|+|+|+.+...
T Consensus 11 Gl~~A~~L~~-~G~~~v~v~E~~~~~~ 36 (382)
T TIGR01984 11 GLSLALALSR-LGKIKIALIEANSPSA 36 (382)
T ss_pred HHHHHHHHhc-CCCceEEEEeCCCccc
Confidence 6899999999 89 9999999997543
No 195
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=35.52 E-value=54 Score=33.87 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=21.7
Q ss_pred CchhccccccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
|+++|.+|++ .|.+|||||++...
T Consensus 15 Gs~aA~~la~-~G~~VlvlEk~~~~ 38 (396)
T COG0644 15 GSSAARRLAK-AGLDVLVLEKGSEP 38 (396)
T ss_pred HHHHHHHHHH-cCCeEEEEecCCCC
Confidence 7899999999 89999999999754
No 196
>PRK07045 putative monooxygenase; Reviewed
Probab=35.47 E-value=90 Score=31.94 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=33.9
Q ss_pred cCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcH
Q psy10349 195 IVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSP 251 (517)
Q Consensus 195 ~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp 251 (517)
+...+|++|..+++|+.|..+++ +.++.|.+. +|+ ++.+ + +|++|-.++|.
T Consensus 116 ~~~~~gv~i~~~~~v~~i~~~~~-~~~~~v~~~-~g~--~~~~-~-~vIgADG~~S~ 166 (388)
T PRK07045 116 LDGLPNVRLRFETSIERIERDAD-GTVTSVTLS-DGE--RVAP-T-VLVGADGARSM 166 (388)
T ss_pred HhcCCCeeEEeCCEEEEEEECCC-CcEEEEEeC-CCC--EEEC-C-EEEECCCCChH
Confidence 34567899999999999988753 445566653 454 5667 4 55555555553
No 197
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=35.33 E-value=16 Score=36.49 Aligned_cols=59 Identities=22% Similarity=0.151 Sum_probs=36.6
Q ss_pred hhhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEE-eCCeEEEEEecceEEEecCCcCcH
Q psy10349 189 QAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFM-KNNKKRVVYAKKEVVLSAGAFFSP 251 (517)
Q Consensus 189 ~~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~-~~g~~~~v~a~keVIlaaGai~tp 251 (517)
...|...+++.+++|..+++|+.+..+. ..++.+... .+|+..+++| +-||-|-| ++|.
T Consensus 114 ~~~L~~~~~~~gv~i~~~~~v~~~~~d~--~~~~~~~~~~~~g~~~~i~a-dlvVgADG-~~S~ 173 (356)
T PF01494_consen 114 DRALREEAEERGVDIRFGTRVVSIEQDD--DGVTVVVRDGEDGEEETIEA-DLVVGADG-AHSK 173 (356)
T ss_dssp HHHHHHHHHHHTEEEEESEEEEEEEEET--TEEEEEEEETCTCEEEEEEE-SEEEE-SG-TT-H
T ss_pred HHhhhhhhhhhhhhheeeeecccccccc--cccccccccccCCceeEEEE-eeeecccC-cccc
Confidence 3345443344459999999999998774 344443333 3688889999 44555555 5554
No 198
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=35.30 E-value=15 Score=40.71 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=20.2
Q ss_pred CchhccccccCCCCeEEEEcccC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGD 23 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~ 23 (517)
|+.+|..||. .|.+|+|||++.
T Consensus 83 Ga~~A~~lA~-rGl~V~LvE~~d 104 (627)
T PLN02464 83 GAGVALDAAT-RGLRVGLVERED 104 (627)
T ss_pred HHHHHHHHHh-CCCEEEEEeccc
Confidence 6889999999 899999999984
No 199
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=34.82 E-value=76 Score=32.84 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.7
Q ss_pred CchhccccccCCCCeEEEEcccC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGD 23 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~ 23 (517)
|+++|..||+ .|.+|+|||+-.
T Consensus 12 G~~aA~~la~-~G~~V~llE~~~ 33 (398)
T TIGR02028 12 GASAAETLAS-AGIQTFLLERKP 33 (398)
T ss_pred HHHHHHHHHh-CCCcEEEEecCC
Confidence 6889999999 999999999853
No 200
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=34.81 E-value=31 Score=37.30 Aligned_cols=64 Identities=22% Similarity=0.306 Sum_probs=38.5
Q ss_pred hhhcccCCCCCe--EEEcCcEEEEEEecCCCCeEE---EEEEEeCCeEEEEEecceEEEecCCcCcHHHHH
Q psy10349 190 AFLRPIVERPNF--HVMKKARVLKVLIDPNTKRVF---GVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLL 255 (517)
Q Consensus 190 ~~l~~~~~~~nl--~i~~~~~V~ri~~~~~~~~a~---gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl 255 (517)
.||...+++-+| .|..+++|++|...++. ..+ -|+...+|+..+-.- +.||+|.|....|.+=.
T Consensus 88 ~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~-~~~~~W~V~~~~~g~~~~~~f-D~VvvatG~~~~P~~P~ 156 (531)
T PF00743_consen 88 EYLESYAEHFGLRKHIRFNTEVVSVERDPDF-SATGKWEVTTENDGKEETEEF-DAVVVATGHFSKPNIPE 156 (531)
T ss_dssp HHHHHHHHHTTGGGGEETSEEEEEEEEETTT-T-ETEEEEEETTTTEEEEEEE-CEEEEEE-SSSCESB--
T ss_pred HHHHHHHhhhCCcceEEEccEEeEeeecccc-CCCceEEEEeecCCeEEEEEe-CeEEEcCCCcCCCCCCh
Confidence 455544444444 78999999999876432 112 233334566554444 35999999999998754
No 201
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=34.45 E-value=76 Score=33.51 Aligned_cols=56 Identities=25% Similarity=0.293 Sum_probs=39.8
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe----------------CCeEEEEEecceEEEecCCcCcHHHHH
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK----------------NNKKRVVYAKKEVVLSAGAFFSPHLLL 255 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~----------------~g~~~~v~a~keVIlaaGai~tp~lLl 255 (517)
+..+++|++++.|.+|.-+ ++.+++|++.. ++...++.+ ..||+|.|..-...|+.
T Consensus 322 ~~~GV~i~~~~~v~~i~~~--~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~-D~vi~a~G~~p~~~l~~ 393 (457)
T PRK11749 322 KEEGVEFEWLAAPVEILGD--EGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPA-DLVIKAIGQTPNPLILS 393 (457)
T ss_pred HHCCCEEEecCCcEEEEec--CCceEEEEEEEEEecCcCCCCCcccCCCCceEEEEC-CEEEECccCCCCchhhc
Confidence 4568999999999998754 34457777642 245567888 57999999766554443
No 202
>PLN02661 Putative thiazole synthesis
Probab=34.27 E-value=17 Score=36.91 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=19.7
Q ss_pred CchhccccccCCCCeEEEEcccC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGD 23 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~ 23 (517)
|+++|..|+++++.+|+|||++.
T Consensus 104 Gl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 104 GLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred HHHHHHHHHHcCCCeEEEEecCc
Confidence 67899999974689999999875
No 203
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=34.23 E-value=14 Score=33.85 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=18.4
Q ss_pred CchhccccccCCCCe-EEEEcccCC
Q psy10349 1 GCVVTNRLTENPDWK-VLLLEAGDE 24 (517)
Q Consensus 1 G~v~A~rLae~~g~~-VlvlEaG~~ 24 (517)
|+.+|.+|.+ .|.+ |+|||+++.
T Consensus 9 Gl~~a~~l~~-~g~~~v~v~e~~~~ 32 (203)
T PF13738_consen 9 GLAAAAHLLE-RGIDPVVVLERNDR 32 (203)
T ss_dssp HHHHHHHHHH-TT---EEEEESSSS
T ss_pred HHHHHHHHHh-CCCCcEEEEeCCCC
Confidence 6788999999 7988 999999964
No 204
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=33.93 E-value=16 Score=38.53 Aligned_cols=47 Identities=26% Similarity=0.222 Sum_probs=31.1
Q ss_pred eEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHH
Q psy10349 201 FHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLL 254 (517)
Q Consensus 201 l~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lL 254 (517)
.+|++++.|++|..++ +.+ .|+. .+|+ ++.+ +.||+|.-+-...+||
T Consensus 238 ~~i~~~~~V~~I~~~~--~~~-~v~~-~~g~--~~~a-d~VI~t~P~~~~~~ll 284 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRG--SNY-TLEL-DNGV--TVET-DSVVVTAPHKAAAGLL 284 (462)
T ss_pred CeEEcCCeEEEEEecC--CcE-EEEE-CCCc--EEEc-CEEEECCCHHHHHHHh
Confidence 5799999999998763 222 2332 2453 5677 5699988776555554
No 205
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=33.90 E-value=85 Score=31.82 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.6
Q ss_pred CchhccccccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
|+++|..|++ .|.+|+|+|+.+..
T Consensus 11 Gl~~A~~L~~-~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 11 GLALALALAR-SGLKIALIEATPAE 34 (385)
T ss_pred HHHHHHHHhc-CCCEEEEEeCCCcc
Confidence 6889999999 89999999999754
No 206
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=33.79 E-value=18 Score=37.12 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=31.1
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcH
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSP 251 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp 251 (517)
.+.++++|+.++.|+.+..++ .. ..|.+ .+++ ++++ +-||.|.|+ +|+
T Consensus 123 ~~~~gv~i~~~~~v~~i~~~~--~~-~~v~~-~~g~--~~~a-~~vI~AdG~-~S~ 170 (391)
T PRK08020 123 EAHPNVTLRCPASLQALQRDD--DG-WELTL-ADGE--EIQA-KLVIGADGA-NSQ 170 (391)
T ss_pred HcCCCcEEEcCCeeEEEEEcC--Ce-EEEEE-CCCC--EEEe-CEEEEeCCC-Cch
Confidence 345689999999999997653 22 22333 2443 5778 567777775 554
No 207
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.74 E-value=1.2e+02 Score=31.33 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=40.9
Q ss_pred CCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCc-CcHHHHH
Q psy10349 198 RPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAF-FSPHLLL 255 (517)
Q Consensus 198 ~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai-~tp~lLl 255 (517)
.+++.+++++.|.++.-..+ ++ .-+.+.. .|+..+++. ..||||.|-= ..|.+|.
T Consensus 290 ~~~v~l~~~~ev~~~~~~G~-g~-~~l~~~~~~~~~~~t~~~-D~vIlATGY~~~~P~fL~ 347 (436)
T COG3486 290 KPDVRLLSLSEVQSVEPAGD-GR-YRLTLRHHETGELETVET-DAVILATGYRRAVPSFLE 347 (436)
T ss_pred CCCeeeccccceeeeecCCC-ce-EEEEEeeccCCCceEEEe-eEEEEecccccCCchhhh
Confidence 67999999999999976643 44 4455553 578888887 5799999965 5665554
No 208
>PRK08013 oxidoreductase; Provisional
Probab=33.31 E-value=19 Score=37.33 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.9
Q ss_pred CchhccccccCCCCeEEEEcccCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDE 24 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~ 24 (517)
|+++|..|++ .|.+|+|||+.+.
T Consensus 15 Gl~~A~~La~-~G~~v~viE~~~~ 37 (400)
T PRK08013 15 GLAVACGLQG-SGLRVAVLEQRVP 37 (400)
T ss_pred HHHHHHHHhh-CCCEEEEEeCCCC
Confidence 6789999999 8999999999874
No 209
>PLN02576 protoporphyrinogen oxidase
Probab=32.44 E-value=17 Score=38.80 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=0.0
Q ss_pred CchhccccccCC-CCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENP-DWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~-g~~VlvlEaG~~~ 25 (517)
|+++|.+|++ . |.+|+|||+....
T Consensus 24 GL~aA~~L~~-~~g~~v~vlEa~~rv 48 (496)
T PLN02576 24 GLAAAYALAS-KHGVNVLVTEARDRV 48 (496)
T ss_pred HHHHHHHHHH-hcCCCEEEEecCCCC
No 210
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=32.32 E-value=78 Score=31.39 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.5
Q ss_pred CchhccccccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
|+++|..|++ .|.+|+|||+-+..
T Consensus 13 Gl~~A~~L~~-~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 13 GLAAALALAR-AGIDVTIIERRPDP 36 (356)
T ss_dssp HHHHHHHHHH-TTCEEEEEESSSSC
T ss_pred HHHHHHHHHh-cccccccchhcccc
Confidence 6899999999 99999999998754
No 211
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=31.82 E-value=63 Score=32.90 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=27.2
Q ss_pred CeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCC
Q psy10349 200 NFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGA 247 (517)
Q Consensus 200 nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGa 247 (517)
+.+|++++.|++|..++ ++++ |.+. +|+ ++.| +.||+|+..
T Consensus 223 g~~i~l~~~V~~I~~~~--~~v~-v~~~-~g~--~~~a-d~VI~a~p~ 263 (450)
T PF01593_consen 223 GGEIRLNTPVTRIERED--GGVT-VTTE-DGE--TIEA-DAVISAVPP 263 (450)
T ss_dssp GGGEESSEEEEEEEEES--SEEE-EEET-TSS--EEEE-SEEEE-S-H
T ss_pred CceeecCCcceeccccc--cccc-cccc-cce--EEec-ceeeecCch
Confidence 44899999999999883 3443 3333 444 6778 468888774
No 212
>KOG0029|consensus
Probab=31.80 E-value=17 Score=39.01 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.2
Q ss_pred CchhccccccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
|+.+|..|.+ .|.+|+||||=.+.
T Consensus 27 GLsAArqL~~-~G~~V~VLEARdRv 50 (501)
T KOG0029|consen 27 GLSAARQLQD-FGFDVLVLEARDRV 50 (501)
T ss_pred HHHHHHHHHH-cCCceEEEeccCCc
Confidence 6789999998 99999999997654
No 213
>PRK07588 hypothetical protein; Provisional
Probab=31.44 E-value=19 Score=37.11 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.5
Q ss_pred CchhccccccCCCCeEEEEcccCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDE 24 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~ 24 (517)
|+++|..|++ .|.+|+|||+.+.
T Consensus 12 Gl~~A~~L~~-~G~~v~v~E~~~~ 34 (391)
T PRK07588 12 GPTLAYWLRR-YGHEPTLIERAPE 34 (391)
T ss_pred HHHHHHHHHH-CCCceEEEeCCCC
Confidence 6889999999 8999999999853
No 214
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=31.37 E-value=1e+02 Score=33.30 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=35.7
Q ss_pred hhcc-cCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCc
Q psy10349 191 FLRP-IVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 191 ~l~~-~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~t 250 (517)
+|.. +.+.++++|..+++|+.+..+++ .+ .|.+...+...++++ +-||.|.|+--+
T Consensus 130 ~L~~~~~~~~~v~v~~~~~v~~i~~~~~--~v-~v~~~~~~g~~~i~a-d~vVgADG~~S~ 186 (547)
T PRK08132 130 YLVERAQALPNIDLRWKNKVTGLEQHDD--GV-TLTVETPDGPYTLEA-DWVIACDGARSP 186 (547)
T ss_pred HHHHHHHhCCCcEEEeCCEEEEEEEcCC--EE-EEEEECCCCcEEEEe-CEEEECCCCCcH
Confidence 4433 33456899999999999987642 22 233433233457888 568888887543
No 215
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=31.18 E-value=19 Score=36.82 Aligned_cols=54 Identities=31% Similarity=0.299 Sum_probs=34.6
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHcC
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSG 258 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~SG 258 (517)
.++....+..++.|+.+..+ + ++.+|... .|. +.|. .||+|+|+. |+.|+-..|
T Consensus 167 ~~~G~~~~~~~~~~~~~~~~--~-~~~~v~t~-~g~---i~a~-~vv~a~G~~-~~~l~~~~~ 220 (387)
T COG0665 167 EELGVVIIEGGTPVTSLERD--G-RVVGVETD-GGT---IEAD-KVVLAAGAW-AGELAATLG 220 (387)
T ss_pred HhcCCeEEEccceEEEEEec--C-cEEEEEeC-Ccc---EEeC-EEEEcCchH-HHHHHHhcC
Confidence 34444788889999999765 3 45444432 233 7885 599999974 555554443
No 216
>PRK07208 hypothetical protein; Provisional
Probab=31.17 E-value=18 Score=38.37 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.8
Q ss_pred CchhccccccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
|+++|.+|++ .|.+|+|||+.+..
T Consensus 16 GL~aA~~L~~-~g~~v~v~E~~~~~ 39 (479)
T PRK07208 16 GLTAAYELLK-RGYPVTVLEADPVV 39 (479)
T ss_pred HHHHHHHHHH-CCCcEEEEecCCCC
Confidence 7889999999 89999999996543
No 217
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=31.10 E-value=92 Score=32.66 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=33.2
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe--CCeEEEEEecceEEEecCCcC
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK--NNKKRVVYAKKEVVLSAGAFF 249 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~--~g~~~~v~a~keVIlaaGai~ 249 (517)
++.|++++.+++|++|..+ ++ .|.+.. +++..++..+ .+|||+|+-.
T Consensus 69 ~~~~i~v~~~~~V~~Id~~--~~---~v~~~~~~~~~~~~~~yd-~lviAtGs~~ 117 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDE--RQ---TVTVLNRKTNEQFEESYD-KLILSPGASA 117 (438)
T ss_pred HhCCCEEEeCCEEEEEECC--CC---EEEEEECCCCcEEeeecC-EEEECCCCCC
Confidence 4568999999999999765 33 244443 2455567774 6999999854
No 218
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=31.07 E-value=23 Score=36.34 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=20.0
Q ss_pred CchhccccccCCCCeEEEEcccC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGD 23 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~ 23 (517)
|+++|..|++ .|.+|+|||+-+
T Consensus 19 Gl~~A~~L~~-~G~~v~liE~~~ 40 (388)
T PRK07494 19 GLAAAIALAR-AGASVALVAPEP 40 (388)
T ss_pred HHHHHHHHhc-CCCeEEEEeCCC
Confidence 6889999999 899999999975
No 219
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=31.07 E-value=1.2e+02 Score=32.98 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=40.8
Q ss_pred CCCeEEEcCcEEEEEEecCCCCeEEEEEEEe---------------CCeEEEEEecceEEEecCCcCcHHHHHH-cCC
Q psy10349 198 RPNFHVMKKARVLKVLIDPNTKRVFGVEFMK---------------NNKKRVVYAKKEVVLSAGAFFSPHLLLL-SGI 259 (517)
Q Consensus 198 ~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~---------------~g~~~~v~a~keVIlaaGai~tp~lLl~-SGI 259 (517)
..+++|++++.+.+|.-++ ++++ ||++.. .++.+++.+. .||+|.|..-.+.+|.. +||
T Consensus 317 ~~GVki~~~~~~~~i~~~~-~~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D-~Vi~A~G~~p~~~~~~~~~gl 391 (564)
T PRK12771 317 REGVEINWLRTPVEIEGDE-NGAT-GLRVITVEKMELDEDGRPSPVTGEEETLEAD-LVVLAIGQDIDSAGLESVPGV 391 (564)
T ss_pred HcCCEEEecCCcEEEEcCC-CCEE-EEEEEEEEecccCCCCCeeecCCceEEEECC-EEEECcCCCCchhhhhhccCc
Confidence 4689999999999997553 3444 776531 3445788884 79999997666666652 443
No 220
>KOG1298|consensus
Probab=30.95 E-value=44 Score=34.22 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=20.0
Q ss_pred CchhccccccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
|+.+|..|++ .|+||+|||+--..
T Consensus 57 GsaLa~~L~k-dGRrVhVIERDl~E 80 (509)
T KOG1298|consen 57 GSALAYALAK-DGRRVHVIERDLSE 80 (509)
T ss_pred HHHHHHHHhh-CCcEEEEEeccccc
Confidence 6789999999 79999999987433
No 221
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=30.78 E-value=22 Score=36.69 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=30.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCC
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGA 247 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGa 247 (517)
.+.+++|..++.|+.|..++ ..+ .|.+ .+|+ +++| +-||.|.|+
T Consensus 123 ~~~gv~v~~~~~v~~i~~~~--~~v-~v~~-~~g~--~~~a-~~vVgAdG~ 166 (405)
T PRK05714 123 HDSDIGLLANARLEQMRRSG--DDW-LLTL-ADGR--QLRA-PLVVAADGA 166 (405)
T ss_pred hcCCCEEEcCCEEEEEEEcC--CeE-EEEE-CCCC--EEEe-CEEEEecCC
Confidence 34589999999999997653 222 2333 3453 5778 579999996
No 222
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=30.69 E-value=89 Score=32.93 Aligned_cols=56 Identities=23% Similarity=0.269 Sum_probs=36.8
Q ss_pred CeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHcC
Q psy10349 200 NFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSG 258 (517)
Q Consensus 200 nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~SG 258 (517)
..+|..++.|+.+.++++++ .=-|.+.+.+... +.++ .||+|+|.++.|.+=-.-|
T Consensus 98 ~~~i~~~~~v~~~~~~~~~~-~w~V~~~~~~~~~-~~a~-~vV~ATG~~~~P~iP~~~G 153 (443)
T COG2072 98 RFQIRFNTRVEVADWDEDTK-RWTVTTSDGGTGE-LTAD-FVVVATGHLSEPYIPDFAG 153 (443)
T ss_pred eeEEEcccceEEEEecCCCC-eEEEEEcCCCeee-EecC-EEEEeecCCCCCCCCCCCC
Confidence 35666677777788886533 3334444433333 7784 6999999999997755555
No 223
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=30.47 E-value=21 Score=37.22 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.5
Q ss_pred CchhccccccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
|+++|..|.. .|++|+|||+-+..
T Consensus 19 GL~AA~eL~k-aG~~v~ilEar~r~ 42 (450)
T COG1231 19 GLSAAYELKK-AGYQVQILEARDRV 42 (450)
T ss_pred HHHHHHHHhh-cCcEEEEEeccCCc
Confidence 7899999999 99999999997654
No 224
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=30.39 E-value=94 Score=31.83 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.6
Q ss_pred CchhccccccCCCCeEEEEcccCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDE 24 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~ 24 (517)
|+++|..|++ .|.+|+|||+.+.
T Consensus 18 Gl~~A~~La~-~G~~v~liE~~~~ 40 (392)
T PRK08773 18 GAACALALAD-AGLSVALVEGREP 40 (392)
T ss_pred HHHHHHHHhc-CCCEEEEEeCCCC
Confidence 6889999999 8999999999863
No 225
>PLN02985 squalene monooxygenase
Probab=30.32 E-value=19 Score=38.87 Aligned_cols=23 Identities=17% Similarity=0.279 Sum_probs=20.5
Q ss_pred CchhccccccCCCCeEEEEcccCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDE 24 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~ 24 (517)
|+++|..|++ .|.+|+|||+...
T Consensus 55 GlalA~aLa~-~G~~V~vlEr~~~ 77 (514)
T PLN02985 55 GSALAYALAK-DGRRVHVIERDLR 77 (514)
T ss_pred HHHHHHHHHH-cCCeEEEEECcCC
Confidence 6889999999 8999999999753
No 226
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=30.14 E-value=20 Score=37.74 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.0
Q ss_pred CchhccccccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
|+++|.+|++ .|.+|+|||+.+..
T Consensus 11 Gl~aA~~L~~-~G~~v~vlE~~~~~ 34 (453)
T TIGR02731 11 GLSCAKYLAD-AGHTPIVLEARDVL 34 (453)
T ss_pred HHHHHHHHHH-CCCcEEEEecCCCC
Confidence 6789999999 89999999998653
No 227
>PRK07045 putative monooxygenase; Reviewed
Probab=30.10 E-value=21 Score=36.71 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=21.6
Q ss_pred CchhccccccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
|+++|..|++ .|.+|+|+|+.+..
T Consensus 17 Gl~~A~~L~~-~G~~v~v~E~~~~~ 40 (388)
T PRK07045 17 GVALAHLLGA-RGHSVTVVERAARN 40 (388)
T ss_pred HHHHHHHHHh-cCCcEEEEeCCCcc
Confidence 6889999999 89999999999854
No 228
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=30.06 E-value=80 Score=33.45 Aligned_cols=57 Identities=11% Similarity=0.088 Sum_probs=37.5
Q ss_pred ccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEE--eCCeEEEEEecceEEEecCCcCcHHHH
Q psy10349 194 PIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFM--KNNKKRVVYAKKEVVLSAGAFFSPHLL 254 (517)
Q Consensus 194 ~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~--~~g~~~~v~a~keVIlaaGai~tp~lL 254 (517)
..+++.+++|++++.|++|.-++ +.+ .|++. .++....+.+ ..||+|.|..-....|
T Consensus 223 ~~l~~~gV~i~~~~~V~~i~~~~--~~v-~v~~~~~~~g~~~~i~~-D~vi~a~G~~pn~~~l 281 (466)
T PRK06115 223 KALTKQGMKFKLGSKVTGATAGA--DGV-SLTLEPAAGGAAETLQA-DYVLVAIGRRPYTQGL 281 (466)
T ss_pred HHHHhcCCEEEECcEEEEEEEcC--CeE-EEEEEEcCCCceeEEEe-CEEEEccCCccccccC
Confidence 33456689999999999996542 222 23333 2355567888 4799999977555543
No 229
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=29.96 E-value=20 Score=38.41 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=20.6
Q ss_pred CchhccccccC-CCCeEEEEcccCC
Q psy10349 1 GCVVTNRLTEN-PDWKVLLLEAGDE 24 (517)
Q Consensus 1 G~v~A~rLae~-~g~~VlvlEaG~~ 24 (517)
|+++|..|++. ++++|+|||+...
T Consensus 17 G~slA~~L~~~~~g~~V~VlEk~~~ 41 (494)
T PRK05257 17 SATLGTLLKELEPEWSITMFERLDG 41 (494)
T ss_pred HHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 78999999984 6899999999853
No 230
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=29.84 E-value=77 Score=33.84 Aligned_cols=58 Identities=16% Similarity=0.062 Sum_probs=38.3
Q ss_pred ccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHH
Q psy10349 194 PIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLL 255 (517)
Q Consensus 194 ~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl 255 (517)
..++..+++|++++.+++|.-.+ +. ..|++.......++.+ ..||+|.|-.-.+.+|.
T Consensus 228 ~~L~~~gV~i~~~~~v~~v~~~~--~~-~~v~~~~~~~~~~i~~-D~vl~a~G~~pn~~~l~ 285 (484)
T TIGR01438 228 EHMEEHGVKFKRQFVPIKVEQIE--AK-VKVTFTDSTNGIEEEY-DTVLLAIGRDACTRKLN 285 (484)
T ss_pred HHHHHcCCEEEeCceEEEEEEcC--Ce-EEEEEecCCcceEEEe-CEEEEEecCCcCCCcCC
Confidence 33456689999999999996542 22 2344443222346778 47999999877776653
No 231
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=29.78 E-value=1e+02 Score=31.39 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=30.1
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCc
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAF 248 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai 248 (517)
.+.++++|..+++|+.|..++ +.+. |.+. ++. ++.+ +.||.|.|+-
T Consensus 123 ~~~~g~~~~~~~~v~~i~~~~--~~~~-v~~~-~g~--~~~a-~~vI~AdG~~ 168 (395)
T PRK05732 123 DKAPGVTLHCPARVANVERTQ--GSVR-VTLD-DGE--TLTG-RLLVAADGSH 168 (395)
T ss_pred hcCCCcEEEcCCEEEEEEEcC--CeEE-EEEC-CCC--EEEe-CEEEEecCCC
Confidence 345789999999999997653 3322 3332 343 4677 5688888853
No 232
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=29.74 E-value=20 Score=38.31 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.4
Q ss_pred CchhccccccC-CCCeEEEEcccC
Q psy10349 1 GCVVTNRLTEN-PDWKVLLLEAGD 23 (517)
Q Consensus 1 G~v~A~rLae~-~g~~VlvlEaG~ 23 (517)
|+.+|..|++. +|++|+|||++.
T Consensus 12 G~a~A~~L~~~~~g~~V~VlEk~~ 35 (483)
T TIGR01320 12 SATLGVLLRELEPNWSITLIERLD 35 (483)
T ss_pred HHHHHHHHHHhCCCCeEEEEEcCC
Confidence 68899999984 599999999986
No 233
>KOG2311|consensus
Probab=29.48 E-value=47 Score=34.95 Aligned_cols=55 Identities=31% Similarity=0.540 Sum_probs=39.2
Q ss_pred cCCCCCeEEEcCcEEEEEEecCCC--CeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHH
Q psy10349 195 IVERPNFHVMKKARVLKVLIDPNT--KRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHL 253 (517)
Q Consensus 195 ~~~~~nl~i~~~~~V~ri~~~~~~--~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~l 253 (517)
+...+||+|+-++.+.=|+.+.+. .++.||... +|. .|+| +-|||..|+|-+.+|
T Consensus 134 i~st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~-dgt--~v~a-~~VilTTGTFL~~~I 190 (679)
T KOG2311|consen 134 ISSTPNLEIREGAVADLIVEDPDDGHCVVSGVVLV-DGT--VVYA-ESVILTTGTFLRGQI 190 (679)
T ss_pred hccCCcchhhhhhhhheeeccCCCCceEEEEEEEe-cCc--Eecc-ceEEEeeccceeeEE
Confidence 345789999998877766666433 357888765 344 4667 469999999877765
No 234
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=29.35 E-value=1.9e+02 Score=28.72 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=47.4
Q ss_pred hhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeC-CeEEEEEecceEEEecCCcCcHHHHHHcC
Q psy10349 191 FLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKN-NKKRVVYAKKEVVLSAGAFFSPHLLLLSG 258 (517)
Q Consensus 191 ~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~-g~~~~v~a~keVIlaaGai~tp~lLl~SG 258 (517)
....+.+++|+.+++++.+.+|.-+ + +.+|.+... ++...+... -|+++-|-.-...|+...+
T Consensus 184 ~~~~l~~~~~i~~~~~~~i~ei~G~--~--v~~v~l~~~~~~~~~~~~~-gvf~~iG~~p~~~~~~~~~ 247 (305)
T COG0492 184 LVERLKKNVKIEVLTNTVVKEILGD--D--VEGVVLKNVKGEEKELPVD-GVFIAIGHLPNTELLKGLG 247 (305)
T ss_pred HHHHHHhcCCeEEEeCCceeEEecC--c--cceEEEEecCCceEEEEec-eEEEecCCCCchHHHhhcc
Confidence 3444455669999999999999655 3 788888753 667777774 6999999887777777654
No 235
>PRK07538 hypothetical protein; Provisional
Probab=29.11 E-value=1e+02 Score=31.91 Aligned_cols=50 Identities=18% Similarity=0.055 Sum_probs=31.4
Q ss_pred CCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcH
Q psy10349 199 PNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSP 251 (517)
Q Consensus 199 ~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp 251 (517)
+..+|..+++|+.+..+++ +.++.+....+|...+++| + +||.|-.++|.
T Consensus 117 g~~~i~~~~~v~~~~~~~~-~~~~~~~~~~~g~~~~~~a-d-lvIgADG~~S~ 166 (413)
T PRK07538 117 GPDAVRTGHRVVGFEQDAD-VTVVFLGDRAGGDLVSVRG-D-VLIGADGIHSA 166 (413)
T ss_pred CCcEEEcCCEEEEEEecCC-ceEEEEeccCCCccceEEe-e-EEEECCCCCHH
Confidence 3467999999999987643 3333333223456678888 4 55555556664
No 236
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=29.04 E-value=81 Score=33.31 Aligned_cols=50 Identities=18% Similarity=0.110 Sum_probs=34.9
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcH
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSP 251 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp 251 (517)
+++.+++|++++.|++|..+ +.. +.+..+++..++.+. .||+|.|..-..
T Consensus 221 L~~~GI~i~~~~~V~~i~~~--~~~---v~~~~~g~~~~i~~D-~vivA~G~~p~~ 270 (458)
T PRK06912 221 LENDGVKIFTGAALKGLNSY--KKQ---ALFEYEGSIQEVNAE-FVLVSVGRKPRV 270 (458)
T ss_pred HHHCCCEEEECCEEEEEEEc--CCE---EEEEECCceEEEEeC-EEEEecCCccCC
Confidence 34568999999999999644 222 344445655678884 699999965443
No 237
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=28.60 E-value=1.8e+02 Score=33.99 Aligned_cols=54 Identities=13% Similarity=0.049 Sum_probs=40.0
Q ss_pred CCCeEEEcCcEEEEEEecCCCCeEEEEEEEe----------------CCeEEEEEecceEEEecCCcCcHH
Q psy10349 198 RPNFHVMKKARVLKVLIDPNTKRVFGVEFMK----------------NNKKRVVYAKKEVVLSAGAFFSPH 252 (517)
Q Consensus 198 ~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~----------------~g~~~~v~a~keVIlaaGai~tp~ 252 (517)
..++++..++.+.+|.-+++++++++|++.. +|...++.+ ..||+|.|....+.
T Consensus 496 eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~a-D~VI~AiG~~p~~~ 565 (944)
T PRK12779 496 EEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPV-DLVIMALGNTANPI 565 (944)
T ss_pred HCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEEC-CEEEEcCCcCCChh
Confidence 4589999999999997664456888887631 244567888 57999999776554
No 238
>PRK06753 hypothetical protein; Provisional
Probab=28.41 E-value=22 Score=36.18 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.9
Q ss_pred CchhccccccCCCCeEEEEcccCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDE 24 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~ 24 (517)
|+++|..|++ .|.+|+|+|+.+.
T Consensus 12 Gl~~A~~L~~-~g~~v~v~E~~~~ 34 (373)
T PRK06753 12 GLTAAALLQE-QGHEVKVFEKNES 34 (373)
T ss_pred HHHHHHHHHh-CCCcEEEEecCCc
Confidence 6889999999 8999999999974
No 239
>PRK08163 salicylate hydroxylase; Provisional
Probab=28.26 E-value=1e+02 Score=31.48 Aligned_cols=58 Identities=12% Similarity=0.092 Sum_probs=35.4
Q ss_pred hhhhhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcH
Q psy10349 187 ASQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSP 251 (517)
Q Consensus 187 ~~~~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp 251 (517)
....++..+.+.++++|+.++.|++|..++ +.++ |.+ .+|+ ++.+ +.||.|.|+-...
T Consensus 111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~-v~~-~~g~--~~~a-d~vV~AdG~~S~~ 168 (396)
T PRK08163 111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDG--DGVT-VFD-QQGN--RWTG-DALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHHHHHhcCCcEEEeCCEEEEEecCC--CceE-EEE-cCCC--EEec-CEEEECCCcChHH
Confidence 334444444445679999999999998653 2222 332 2443 4677 5688888854433
No 240
>PRK06185 hypothetical protein; Provisional
Probab=28.21 E-value=22 Score=36.77 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.5
Q ss_pred CchhccccccCCCCeEEEEcccCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDE 24 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~ 24 (517)
|+++|..|++ .|.+|+|||+.+.
T Consensus 18 Gl~~A~~La~-~G~~v~liE~~~~ 40 (407)
T PRK06185 18 GMMLGLLLAR-AGVDVTVLEKHAD 40 (407)
T ss_pred HHHHHHHHHh-CCCcEEEEecCCc
Confidence 6789999999 8999999999863
No 241
>PRK06184 hypothetical protein; Provisional
Probab=28.17 E-value=1.3e+02 Score=32.24 Aligned_cols=49 Identities=14% Similarity=0.050 Sum_probs=32.4
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcC
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFF 249 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~ 249 (517)
...+++|..+++|++|..+++ .++ |.+...+...++++ +-||.|.|+--
T Consensus 120 ~~~gv~i~~~~~v~~i~~~~~--~v~-v~~~~~~~~~~i~a-~~vVgADG~~S 168 (502)
T PRK06184 120 AELGHRVEFGCELVGFEQDAD--GVT-ARVAGPAGEETVRA-RYLVGADGGRS 168 (502)
T ss_pred HHCCCEEEeCcEEEEEEEcCC--cEE-EEEEeCCCeEEEEe-CEEEECCCCch
Confidence 344899999999999987642 232 33333233457888 56888888644
No 242
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=27.65 E-value=28 Score=35.86 Aligned_cols=49 Identities=14% Similarity=0.086 Sum_probs=30.8
Q ss_pred CCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHH
Q psy10349 198 RPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPH 252 (517)
Q Consensus 198 ~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~ 252 (517)
+.+.+|.+++.|++|..++ ++++. .+..+|+ ++.+ +.||++.-+-...+
T Consensus 209 ~~g~~i~~~~~V~~i~~~~--~~~~~-~~~~~g~--~~~~-d~vi~a~p~~~~~~ 257 (419)
T TIGR03467 209 SRGGEVRLGTRVRSIEANA--GGIRA-LVLSGGE--TLPA-DAVVLAVPPRHAAS 257 (419)
T ss_pred HcCCEEEcCCeeeEEEEcC--CcceE-EEecCCc--cccC-CEEEEcCCHHHHHH
Confidence 4478999999999998874 33332 2223454 4667 46888755443333
No 243
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=27.52 E-value=1.2e+02 Score=30.77 Aligned_cols=59 Identities=24% Similarity=0.311 Sum_probs=41.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-----------------CCeEEEEEecceEEEecCCcCcHHHHHH-cC
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-----------------NNKKRVVYAKKEVVLSAGAFFSPHLLLL-SG 258 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-----------------~g~~~~v~a~keVIlaaGai~tp~lLl~-SG 258 (517)
+..+++|++++.+.+|.-+ +++.+|++.. +++..++.+ ..||+|.|..-++.|+.- +|
T Consensus 221 ~~~gi~i~~~~~v~~i~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-D~vi~a~G~~p~~~l~~~~~g 296 (352)
T PRK12770 221 IARGVEFLELVTPVRIIGE---GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEA-DTVVFAIGEIPTPPFAKECLG 296 (352)
T ss_pred HHcCCEEeeccCceeeecC---CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEEC-CEEEECcccCCCchhhhcccC
Confidence 4558999999999998532 3566776531 345567888 579999998877655443 44
Q ss_pred C
Q psy10349 259 I 259 (517)
Q Consensus 259 I 259 (517)
|
T Consensus 297 ~ 297 (352)
T PRK12770 297 I 297 (352)
T ss_pred c
Confidence 4
No 244
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=27.11 E-value=1.2e+02 Score=34.98 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=44.8
Q ss_pred hhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHcCC
Q psy10349 191 FLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGI 259 (517)
Q Consensus 191 ~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~SGI 259 (517)
.+...+++.+++|++++.|++|.-+.+ .....|.+. +|+ .+.+ ..||+|+|.--+..|+..+||
T Consensus 192 ~l~~~L~~~GV~v~~~~~v~~I~~~~~-~~~~~v~~~-dG~--~i~~-D~Vv~A~G~rPn~~L~~~~Gl 255 (847)
T PRK14989 192 QLRRKIESMGVRVHTSKNTLEIVQEGV-EARKTMRFA-DGS--ELEV-DFIVFSTGIRPQDKLATQCGL 255 (847)
T ss_pred HHHHHHHHCCCEEEcCCeEEEEEecCC-CceEEEEEC-CCC--EEEc-CEEEECCCcccCchHHhhcCc
Confidence 333444567899999999999965421 345555553 454 4667 579999998888888777775
No 245
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=27.04 E-value=24 Score=36.36 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=19.8
Q ss_pred CchhccccccCCCCeEEEEccc
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAG 22 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG 22 (517)
|+++|..|++ .|.+|.|||+-
T Consensus 14 Gl~lA~~L~~-~G~~V~l~E~~ 34 (387)
T COG0654 14 GLALALALAR-AGLDVTLLERA 34 (387)
T ss_pred HHHHHHHHHh-CCCcEEEEccC
Confidence 7889999999 99999999998
No 246
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=27.03 E-value=26 Score=36.82 Aligned_cols=53 Identities=11% Similarity=0.213 Sum_probs=35.3
Q ss_pred ccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHH
Q psy10349 194 PIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLL 254 (517)
Q Consensus 194 ~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lL 254 (517)
..+++.++++++++.|++|.-+ ++. +.+..++. ++.+ ..||+|.|..-...+|
T Consensus 207 ~~l~~~gV~v~~~~~v~~i~~~--~~~---v~v~~~~g--~i~~-D~vl~a~G~~pn~~~l 259 (441)
T PRK08010 207 TILRDQGVDIILNAHVERISHH--ENQ---VQVHSEHA--QLAV-DALLIASGRQPATASL 259 (441)
T ss_pred HHHHhCCCEEEeCCEEEEEEEc--CCE---EEEEEcCC--eEEe-CEEEEeecCCcCCCCc
Confidence 3345679999999999999755 232 23332222 3567 4799999977666554
No 247
>PRK13984 putative oxidoreductase; Provisional
Probab=26.89 E-value=1.6e+02 Score=32.33 Aligned_cols=55 Identities=24% Similarity=0.259 Sum_probs=40.5
Q ss_pred CCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-------C---------CeEEEEEecceEEEecCCcCcHHHHH
Q psy10349 198 RPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-------N---------NKKRVVYAKKEVVLSAGAFFSPHLLL 255 (517)
Q Consensus 198 ~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-------~---------g~~~~v~a~keVIlaaGai~tp~lLl 255 (517)
..+++|++++.+.+|..+ ++++++|++.. + +...++.+ ..||+|.|......+|.
T Consensus 474 ~~GV~i~~~~~~~~i~~~--~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~a-D~Vi~aiG~~p~~~~l~ 544 (604)
T PRK13984 474 EEGVVIYPGWGPMEVVIE--NDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEA-DMVVEAIGQAPDYSYLP 544 (604)
T ss_pred HcCCEEEeCCCCEEEEcc--CCEEEEEEEEEEeeccCCCCCccceecCCceEEEEC-CEEEEeeCCCCChhhhh
Confidence 468999999999998654 46888887642 1 23467888 47999999876666654
No 248
>KOG2852|consensus
Probab=26.77 E-value=73 Score=31.39 Aligned_cols=64 Identities=22% Similarity=0.282 Sum_probs=43.8
Q ss_pred hhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-CCeEEEEEecceEEEecCCcCcHHHHHHcCC
Q psy10349 191 FLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-NNKKRVVYAKKEVVLSAGAFFSPHLLLLSGI 259 (517)
Q Consensus 191 ~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-~g~~~~v~a~keVIlaaGai~tp~lLl~SGI 259 (517)
.|..+.++.|++++.+. |..|. ++ ..|+.+|-... .+......+ ..||||||. -|++||..-+|
T Consensus 153 i~sea~k~~~V~lv~Gk-v~ev~-dE-k~r~n~v~~ae~~~ti~~~d~-~~ivvsaGP-WTskllp~~rI 217 (380)
T KOG2852|consen 153 ILSEAEKRGGVKLVFGK-VKEVS-DE-KHRINSVPKAEAEDTIIKADV-HKIVVSAGP-WTSKLLPFTRI 217 (380)
T ss_pred HHHHHHhhcCeEEEEee-eEEee-cc-cccccccchhhhcCceEEeee-eEEEEecCC-Cchhhcccccc
Confidence 45567788999999876 44454 33 46888887653 233445556 469999997 58888887654
No 249
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=26.59 E-value=28 Score=35.66 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=0.0
Q ss_pred CchhccccccCCCCeEEEEcccC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGD 23 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~ 23 (517)
|+++|..|++ .|.+|+|+|+.+
T Consensus 13 Gl~~A~~L~~-~G~~v~l~E~~~ 34 (374)
T PRK06617 13 GMLTALSFAQ-KGIKTTIFESKS 34 (374)
T ss_pred HHHHHHHHHc-CCCeEEEecCCC
No 250
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=26.34 E-value=1.2e+02 Score=30.81 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.3
Q ss_pred CchhccccccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
|+++|..|++ .|.+|+|||+++..
T Consensus 17 Gl~~A~~L~~-~G~~v~v~E~~~~~ 40 (388)
T PRK07608 17 GASLALALAQ-SGLRVALLAPRAPP 40 (388)
T ss_pred HHHHHHHHHh-CCCeEEEEecCCCc
Confidence 6889999999 89999999999753
No 251
>KOG2853|consensus
Probab=26.17 E-value=1.4e+02 Score=30.24 Aligned_cols=56 Identities=29% Similarity=0.355 Sum_probs=39.7
Q ss_pred EcCcEEEEEEecC--------CCC-------eEEEEEEE-eCCeEEEEEecceEEEecCCcCcHHHHHHcCCCC
Q psy10349 204 MKKARVLKVLIDP--------NTK-------RVFGVEFM-KNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGP 261 (517)
Q Consensus 204 ~~~~~V~ri~~~~--------~~~-------~a~gV~~~-~~g~~~~v~a~keVIlaaGai~tp~lLl~SGIGp 261 (517)
+.+-.|+...++. +.+ ++.||.+. .++...++++ ..+|+||||. |-|+-.+.|||-
T Consensus 260 f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~-al~V~aAGa~-s~QvArlAgIG~ 331 (509)
T KOG2853|consen 260 FVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKF-ALCVNAAGAW-SGQVARLAGIGK 331 (509)
T ss_pred EecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeE-EEEEeccCcc-HHHHHHHhccCC
Confidence 4556677777651 122 56677776 3566678888 4799999985 889999999983
No 252
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=26.12 E-value=1.6e+02 Score=34.77 Aligned_cols=57 Identities=11% Similarity=0.183 Sum_probs=42.2
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe----------------CCeEEEEEecceEEEecCCcCcHHHHH
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK----------------NNKKRVVYAKKEVVLSAGAFFSPHLLL 255 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~----------------~g~~~~v~a~keVIlaaGai~tp~lLl 255 (517)
...+++|++++.+.+|..++ ++++++|++.+ ++...++.+. .||+|.|-.-.+.++.
T Consensus 620 ~eeGI~~~~~~~p~~i~~~~-~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D-~Vi~AiG~~p~~~~~~ 692 (1006)
T PRK12775 620 KEEGIDFFFLHSPVEIYVDA-EGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECD-TVIYALGTKANPIITQ 692 (1006)
T ss_pred HhCCCEEEecCCcEEEEeCC-CCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcC-EEEECCCcCCChhhhh
Confidence 45789999999999997654 47899998752 1344678884 7999999776655443
No 253
>PLN02463 lycopene beta cyclase
Probab=25.97 E-value=26 Score=36.95 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=19.5
Q ss_pred CchhccccccCCCCeEEEEcccC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGD 23 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~ 23 (517)
|+.+|..|++ .|.+|+|||..+
T Consensus 40 GLalA~~La~-~Gl~V~liE~~~ 61 (447)
T PLN02463 40 GLAVAQQVSE-AGLSVCCIDPSP 61 (447)
T ss_pred HHHHHHHHHH-CCCeEEEeccCc
Confidence 6789999998 899999999864
No 254
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=25.82 E-value=25 Score=36.18 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.9
Q ss_pred CchhccccccCCCCeEEEEcccCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDE 24 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~ 24 (517)
|+++|..|++ .|.+|+|||+.+.
T Consensus 14 Gl~~A~~L~~-~G~~v~v~E~~~~ 36 (392)
T PRK08243 14 GLLLGQLLHL-AGIDSVVLERRSR 36 (392)
T ss_pred HHHHHHHHHh-cCCCEEEEEcCCc
Confidence 6889999999 8999999999874
No 255
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=25.30 E-value=1.1e+02 Score=32.56 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=37.0
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHH
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHL 253 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~l 253 (517)
+++.+++|++++.|++|..+.++ ++..+. ..+|+..++.+. .||+|.|..-....
T Consensus 231 l~~~gI~i~~~~~v~~i~~~~~~-~~~~~~-~~~g~~~~i~~D-~vi~a~G~~p~~~~ 285 (472)
T PRK05976 231 LKKLGVRVVTGAKVLGLTLKKDG-GVLIVA-EHNGEEKTLEAD-KVLVSVGRRPNTEG 285 (472)
T ss_pred HHhcCCEEEeCcEEEEEEEecCC-CEEEEE-EeCCceEEEEeC-EEEEeeCCccCCCC
Confidence 45669999999999999752112 333332 245666678884 69999998755443
No 256
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=25.13 E-value=66 Score=24.47 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=24.3
Q ss_pred hhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEE
Q psy10349 191 FLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFM 227 (517)
Q Consensus 191 ~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~ 227 (517)
++...+++.|++|++++.|.+|.-+++ + ++ |.+.
T Consensus 45 ~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-~~-V~~~ 78 (80)
T PF00070_consen 45 ILEEYLRKRGVEVHTNTKVKEIEKDGD-G-VE-VTLE 78 (80)
T ss_dssp HHHHHHHHTTEEEEESEEEEEEEEETT-S-EE-EEEE
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEEeCC-E-EE-EEEe
Confidence 333334556999999999999988753 3 65 6654
No 257
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=24.98 E-value=29 Score=35.91 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=31.5
Q ss_pred cCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCc
Q psy10349 195 IVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFS 250 (517)
Q Consensus 195 ~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~t 250 (517)
+.+.+|++|..+++|+.|..+++ .+ .|.+ .+|+ +++| +-||.|-| ++|
T Consensus 121 ~~~~~~v~v~~~~~v~~i~~~~~--~~-~v~~-~~g~--~~~a-~lvIgADG-~~S 168 (405)
T PRK08850 121 VQKQDNVTLLMPARCQSIAVGES--EA-WLTL-DNGQ--ALTA-KLVVGADG-ANS 168 (405)
T ss_pred HhcCCCeEEEcCCeeEEEEeeCC--eE-EEEE-CCCC--EEEe-CEEEEeCC-CCC
Confidence 33457899999999999977632 22 2433 3454 5778 56777777 344
No 258
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=24.72 E-value=79 Score=32.92 Aligned_cols=55 Identities=25% Similarity=0.310 Sum_probs=35.2
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeC--CeEEEEEecceEEEecCCcCcHHHHHHcCC
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKN--NKKRVVYAKKEVVLSAGAFFSPHLLLLSGI 259 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~--g~~~~v~a~keVIlaaGai~tp~lLl~SGI 259 (517)
++.+++++.++.|++|..+ +++ |.+... ++...+.+ +.||||.|+ +|..+-..|+
T Consensus 55 ~~~gv~~~~~~~V~~id~~--~~~---v~~~~~~~~~~~~~~y-d~lIiATG~--~p~~~~i~G~ 111 (427)
T TIGR03385 55 KKRGIDVKTNHEVIEVNDE--RQT---VVVRNNKTNETYEESY-DYLILSPGA--SPIVPNIEGI 111 (427)
T ss_pred HhcCCeEEecCEEEEEECC--CCE---EEEEECCCCCEEecCC-CEEEECCCC--CCCCCCCCCc
Confidence 4568999999999999755 232 444432 33333337 469999998 5655544553
No 259
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=24.42 E-value=1.3e+02 Score=34.48 Aligned_cols=59 Identities=15% Similarity=0.245 Sum_probs=43.0
Q ss_pred ccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHcCC
Q psy10349 194 PIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGI 259 (517)
Q Consensus 194 ~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~SGI 259 (517)
..+++.+++|++++.|++|.-+ +++.+|++. +|+ ++.+ ..||+|+|.--...|+..+|+
T Consensus 190 ~~l~~~GV~v~~~~~v~~i~~~---~~~~~v~~~-dG~--~i~~-D~Vi~a~G~~Pn~~la~~~gl 248 (785)
T TIGR02374 190 RELEQKGLTFLLEKDTVEIVGA---TKADRIRFK-DGS--SLEA-DLIVMAAGIRPNDELAVSAGI 248 (785)
T ss_pred HHHHHcCCEEEeCCceEEEEcC---CceEEEEEC-CCC--EEEc-CEEEECCCCCcCcHHHHhcCC
Confidence 3345678999999999998643 356677664 454 4667 579999998777777766765
No 260
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=24.41 E-value=1.5e+02 Score=30.59 Aligned_cols=62 Identities=11% Similarity=0.210 Sum_probs=41.4
Q ss_pred hhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHcCCC
Q psy10349 191 FLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIG 260 (517)
Q Consensus 191 ~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~SGIG 260 (517)
++....++.+++|++++.|++|.-+ ..+ .|+. .+|+ ++.+ +.||+|+|..-...|+..+|+.
T Consensus 191 ~l~~~l~~~GV~i~~~~~V~~i~~~---~~~-~v~l-~~g~--~i~a-D~Vv~a~G~~pn~~l~~~~gl~ 252 (396)
T PRK09754 191 YLLQRHQQAGVRILLNNAIEHVVDG---EKV-ELTL-QSGE--TLQA-DVVIYGIGISANDQLAREANLD 252 (396)
T ss_pred HHHHHHHHCCCEEEeCCeeEEEEcC---CEE-EEEE-CCCC--EEEC-CEEEECCCCChhhHHHHhcCCC
Confidence 3433345668999999999998532 222 2333 3454 4667 5799999988777777777753
No 261
>PRK08244 hypothetical protein; Provisional
Probab=24.29 E-value=30 Score=36.92 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.4
Q ss_pred CchhccccccCCCCeEEEEcccCCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
|+++|..|++ .|.+|+|||+.+..
T Consensus 14 Gl~lA~~L~~-~G~~v~viEr~~~~ 37 (493)
T PRK08244 14 GLMLASELAL-AGVKTCVIERLKET 37 (493)
T ss_pred HHHHHHHHHH-CCCcEEEEecCCCC
Confidence 6889999999 99999999998754
No 262
>PRK06116 glutathione reductase; Validated
Probab=24.19 E-value=29 Score=36.57 Aligned_cols=52 Identities=8% Similarity=0.112 Sum_probs=34.6
Q ss_pred cCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHH
Q psy10349 195 IVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPH 252 (517)
Q Consensus 195 ~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~ 252 (517)
.+++.+++|++++.|.+|.-+++ +.+ .|++ .+|+ ++.+ ..||+|.|.--...
T Consensus 217 ~L~~~GV~i~~~~~V~~i~~~~~-g~~-~v~~-~~g~--~i~~-D~Vv~a~G~~p~~~ 268 (450)
T PRK06116 217 EMEKKGIRLHTNAVPKAVEKNAD-GSL-TLTL-EDGE--TLTV-DCLIWAIGREPNTD 268 (450)
T ss_pred HHHHCCcEEECCCEEEEEEEcCC-ceE-EEEE-cCCc--EEEe-CEEEEeeCCCcCCC
Confidence 34567899999999999976532 322 2433 2454 4677 46999999764444
No 263
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=24.10 E-value=34 Score=35.21 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=0.0
Q ss_pred CchhccccccCCC--CeEEEEcccC
Q psy10349 1 GCVVTNRLTENPD--WKVLLLEAGD 23 (517)
Q Consensus 1 G~v~A~rLae~~g--~~VlvlEaG~ 23 (517)
|+++|..|++ .| .+|+|||+.+
T Consensus 13 Gl~~A~~L~~-~g~g~~v~liE~~~ 36 (403)
T PRK07333 13 GLALAVALKQ-AAPHLPVTVVDAAP 36 (403)
T ss_pred HHHHHHHHhc-CCCCCEEEEEeCCC
No 264
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=23.77 E-value=82 Score=32.35 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.2
Q ss_pred hhccccccCCCCeEEEEcccCCC
Q psy10349 3 VVTNRLTENPDWKVLLLEAGDEE 25 (517)
Q Consensus 3 v~A~rLae~~g~~VlvlEaG~~~ 25 (517)
++|.+|++ .|.+|+|||+-+..
T Consensus 1 ~AA~~L~~-~G~~v~vlEa~~~~ 22 (419)
T TIGR03467 1 SAAVELAR-AGARVTLFEARPRL 22 (419)
T ss_pred ChHHHHHh-CCCceEEEecCCCC
Confidence 47899999 89999999998754
No 265
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=23.51 E-value=30 Score=36.53 Aligned_cols=39 Identities=31% Similarity=0.254 Sum_probs=25.8
Q ss_pred eEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecC
Q psy10349 201 FHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAG 246 (517)
Q Consensus 201 l~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaG 246 (517)
.+|.+++.|++|..++ +++ .|.+. +|+ ++.+ +.||+++-
T Consensus 239 ~~i~~~~~V~~I~~~~--~~~-~v~~~-~g~--~~~a-d~VI~a~p 277 (463)
T PRK12416 239 TVVKKGAVTTAVSKQG--DRY-EISFA-NHE--SIQA-DYVVLAAP 277 (463)
T ss_pred ccEEcCCEEEEEEEcC--CEE-EEEEC-CCC--EEEe-CEEEECCC
Confidence 4799999999998763 332 33332 444 3667 46888774
No 266
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=23.44 E-value=30 Score=35.56 Aligned_cols=48 Identities=21% Similarity=0.208 Sum_probs=31.7
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcH
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSP 251 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp 251 (517)
...+|++|..+++|+++..+++ .++ |.+. +|. ++++ +-||.|-|+ +|+
T Consensus 121 ~~~~~i~i~~~~~v~~~~~~~~--~~~-v~~~-~g~--~~~~-~lvIgADG~-~S~ 168 (384)
T PRK08849 121 AQYPNLTLMCPEKLADLEFSAE--GNR-VTLE-SGA--EIEA-KWVIGADGA-NSQ 168 (384)
T ss_pred HhCCCeEEECCCceeEEEEcCC--eEE-EEEC-CCC--EEEe-eEEEEecCC-Cch
Confidence 4457899999999999987643 222 4443 453 6777 557777664 444
No 267
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=23.38 E-value=32 Score=36.06 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=33.9
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHH
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHL 253 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~l 253 (517)
++..++++++++.|++|.-+ ++. +.+..+++ ++.+ +.||+|.|..-...+
T Consensus 208 l~~~GI~i~~~~~V~~i~~~--~~~---v~v~~~g~--~i~~-D~viva~G~~p~~~~ 257 (438)
T PRK07251 208 MEEDGITFLLNAHTTEVKND--GDQ---VLVVTEDE--TYRF-DALLYATGRKPNTEP 257 (438)
T ss_pred HHHcCCEEEcCCEEEEEEec--CCE---EEEEECCe--EEEc-CEEEEeeCCCCCccc
Confidence 34568999999999999754 233 22333454 4667 469999997755444
No 268
>PLN02697 lycopene epsilon cyclase
Probab=22.94 E-value=31 Score=37.23 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=30.5
Q ss_pred CCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHH
Q psy10349 198 RPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLL 255 (517)
Q Consensus 198 ~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl 255 (517)
+.++++ .++.|++|..++ +.+..|. ..+|. +++| +.||.|.|+ .|.+++.
T Consensus 204 ~~GV~~-~~~~V~~I~~~~--~~~~vv~-~~dG~--~i~A-~lVI~AdG~-~S~rl~~ 253 (529)
T PLN02697 204 ESGVSY-LSSKVDRITEAS--DGLRLVA-CEDGR--VIPC-RLATVASGA-ASGRLLQ 253 (529)
T ss_pred hcCCEE-EeeEEEEEEEcC--CcEEEEE-EcCCc--EEEC-CEEEECCCc-Chhhhhc
Confidence 346776 678999987653 2333232 23443 5778 579999996 5555544
No 269
>PRK06834 hypothetical protein; Provisional
Probab=22.74 E-value=1.6e+02 Score=31.41 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=34.9
Q ss_pred hhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcC
Q psy10349 190 AFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFF 249 (517)
Q Consensus 190 ~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~ 249 (517)
..|...+++.+++|+.+++|+.|..+++ .+ .|++ .+|+ ++++ +-||.|.|+--
T Consensus 104 ~~L~~~l~~~gv~i~~~~~v~~v~~~~~--~v-~v~~-~~g~--~i~a-~~vVgADG~~S 156 (488)
T PRK06834 104 RILAEWVGELGVPIYRGREVTGFAQDDT--GV-DVEL-SDGR--TLRA-QYLVGCDGGRS 156 (488)
T ss_pred HHHHHHHHhCCCEEEcCCEEEEEEEcCC--eE-EEEE-CCCC--EEEe-CEEEEecCCCC
Confidence 3444434455899999999999987642 22 2333 3443 6788 56999999743
No 270
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=22.70 E-value=31 Score=36.46 Aligned_cols=54 Identities=19% Similarity=0.195 Sum_probs=36.3
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHH
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLL 254 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lL 254 (517)
++..++++++++.|++|.-+.+ + ...|++. +++ ..+.+ ..||+|.|..-...+|
T Consensus 217 l~~~gI~i~~~~~v~~i~~~~~-~-~~~v~~~-~g~-~~i~~-D~vi~a~G~~pn~~~l 270 (450)
T TIGR01421 217 YEKEGINVHKLSKPVKVEKTVE-G-KLVIHFE-DGK-SIDDV-DELIWAIGRKPNTKGL 270 (450)
T ss_pred HHHcCCEEEcCCEEEEEEEeCC-c-eEEEEEC-CCc-EEEEc-CEEEEeeCCCcCcccC
Confidence 3456899999999999975422 2 2234332 342 45777 4799999987776654
No 271
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=22.53 E-value=34 Score=36.07 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=0.0
Q ss_pred CchhccccccCCCCeEEEEcccCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDE 24 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~ 24 (517)
|+.+|.+|++ .|++|+|+|+++.
T Consensus 17 G~~aA~~la~-~G~~v~liE~~~~ 39 (461)
T PRK05249 17 GEGAAMQAAK-LGKRVAVIERYRN 39 (461)
T ss_pred HHHHHHHHHh-CCCEEEEEecccc
No 272
>PRK07236 hypothetical protein; Provisional
Probab=22.41 E-value=33 Score=35.25 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.9
Q ss_pred CchhccccccCCCCeEEEEcccC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGD 23 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~ 23 (517)
|+++|..|++ .|.+|+|+|+.+
T Consensus 18 Gl~~A~~L~~-~G~~v~v~E~~~ 39 (386)
T PRK07236 18 GLFAALLLRR-AGWDVDVFERSP 39 (386)
T ss_pred HHHHHHHHHh-CCCCEEEEecCC
Confidence 6789999999 899999999875
No 273
>PRK07190 hypothetical protein; Provisional
Probab=22.31 E-value=1.4e+02 Score=31.78 Aligned_cols=53 Identities=11% Similarity=0.214 Sum_probs=34.7
Q ss_pred hhhcccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcC
Q psy10349 190 AFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFF 249 (517)
Q Consensus 190 ~~l~~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~ 249 (517)
..|...+...+++|..+++|+.|..+++ .++ |.+ .+|+ +++| +-||.|.|+=.
T Consensus 113 ~~L~~~~~~~Gv~v~~~~~v~~l~~~~~--~v~-v~~-~~g~--~v~a-~~vVgADG~~S 165 (487)
T PRK07190 113 KLLDDKLKEAGAAVKRNTSVVNIELNQA--GCL-TTL-SNGE--RIQS-RYVIGADGSRS 165 (487)
T ss_pred HHHHHHHHHCCCEEEeCCEEEEEEEcCC--eeE-EEE-CCCc--EEEe-CEEEECCCCCH
Confidence 3443333445899999999999988743 222 122 3443 6888 57999999733
No 274
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=22.27 E-value=33 Score=36.30 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.1
Q ss_pred CchhccccccCCCCeEEEEcccC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGD 23 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~ 23 (517)
|..+|.+|++ .|++|+|||++.
T Consensus 12 G~~aA~~~~~-~g~~V~lie~~~ 33 (458)
T PRK06912 12 GYVAAITAAQ-NGKNVTLIDEAD 33 (458)
T ss_pred HHHHHHHHHh-CCCcEEEEECCc
Confidence 5678899998 899999999874
No 275
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=22.23 E-value=33 Score=36.70 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.1
Q ss_pred CchhccccccC-CCCeEEEEccc
Q psy10349 1 GCVVTNRLTEN-PDWKVLLLEAG 22 (517)
Q Consensus 1 G~v~A~rLae~-~g~~VlvlEaG 22 (517)
|+++|..|++. ++++|+|||+-
T Consensus 18 G~sla~~L~~~~~~~~V~vlEr~ 40 (497)
T PRK13339 18 STTFGVLLKELDPDWNIEVVERL 40 (497)
T ss_pred HHHHHHHHHhCCCCCeEEEEEcC
Confidence 68899999984 58999999993
No 276
>PRK06475 salicylate hydroxylase; Provisional
Probab=21.91 E-value=1.6e+02 Score=30.27 Aligned_cols=50 Identities=12% Similarity=0.186 Sum_probs=32.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcH
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSP 251 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp 251 (517)
+.++++|..+++|+++..++ .. ..|++...+...++.+ + +|+.|-.++|.
T Consensus 119 ~~~~i~v~~~~~v~~~~~~~--~~-v~v~~~~~~~~~~~~a-d-lvIgADG~~S~ 168 (400)
T PRK06475 119 NNPGIEIKLGAEMTSQRQTG--NS-ITATIIRTNSVETVSA-A-YLIACDGVWSM 168 (400)
T ss_pred hcCCcEEEECCEEEEEecCC--Cc-eEEEEEeCCCCcEEec-C-EEEECCCccHh
Confidence 45689999999999997653 22 2334443222245677 4 67777767775
No 277
>PTZ00367 squalene epoxidase; Provisional
Probab=21.81 E-value=36 Score=37.11 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=0.0
Q ss_pred CchhccccccCCCCeEEEEcccC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGD 23 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~ 23 (517)
|+++|..|++ .|.+|+|||+.+
T Consensus 45 GlalA~aLar-~G~~V~VlEr~~ 66 (567)
T PTZ00367 45 GPVLAKALSK-QGRKVLMLERDL 66 (567)
T ss_pred HHHHHHHHHh-cCCEEEEEcccc
No 278
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=21.78 E-value=34 Score=36.31 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=18.9
Q ss_pred CchhccccccCCCCeEEEEccc
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAG 22 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG 22 (517)
|..+|.+|++ .|++|+|+|++
T Consensus 16 G~~aA~~aa~-~G~~v~lie~~ 36 (472)
T PRK05976 16 GYVAAIRAGQ-LGLKTALVEKG 36 (472)
T ss_pred HHHHHHHHHh-CCCeEEEEEcc
Confidence 5678999999 89999999986
No 279
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=21.76 E-value=32 Score=33.45 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.3
Q ss_pred CchhccccccCCCCeEEEEcccC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGD 23 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~ 23 (517)
|+.+|..|++ .|.+|+|+|++.
T Consensus 12 Gl~aA~~l~~-~g~~v~lie~~~ 33 (300)
T TIGR01292 12 GLTAAIYAAR-ANLKTLIIEGME 33 (300)
T ss_pred HHHHHHHHHH-CCCCEEEEeccC
Confidence 5788999998 899999999885
No 280
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=21.73 E-value=31 Score=35.54 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=0.0
Q ss_pred CchhccccccCCCCeEEEEcc
Q psy10349 1 GCVVTNRLTENPDWKVLLLEA 21 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEa 21 (517)
|+++|..|++ .|.+|+|||+
T Consensus 14 Gl~~A~~L~~-~G~~v~viE~ 33 (390)
T TIGR02360 14 GLLLGQLLHK-AGIDNVILER 33 (390)
T ss_pred HHHHHHHHHH-CCCCEEEEEC
No 281
>PRK09126 hypothetical protein; Provisional
Probab=21.70 E-value=2.1e+02 Score=29.14 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=21.0
Q ss_pred CchhccccccCCCCeEEEEcccCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDE 24 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~ 24 (517)
|+.+|..|++ .|.+|+|||+.+.
T Consensus 15 Gl~~A~~L~~-~G~~v~v~E~~~~ 37 (392)
T PRK09126 15 GLSFARSLAG-SGLKVTLIERQPL 37 (392)
T ss_pred HHHHHHHHHh-CCCcEEEEeCCCc
Confidence 6889999999 8999999999975
No 282
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=21.61 E-value=1.7e+02 Score=33.29 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=39.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCCeEEEEEEEe-----------------CCeEEEEEecceEEEecCCcCcHHH
Q psy10349 197 ERPNFHVMKKARVLKVLIDPNTKRVFGVEFMK-----------------NNKKRVVYAKKEVVLSAGAFFSPHL 253 (517)
Q Consensus 197 ~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~-----------------~g~~~~v~a~keVIlaaGai~tp~l 253 (517)
...+++++.++.+.+|..++ ++++++|++.. .+...++.+ ..||+|.|..-...+
T Consensus 619 ~~~GV~i~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~-D~Vi~A~G~~p~~~l 690 (752)
T PRK12778 619 KEEGIEFLTLHNPIEYLADE-KGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDV-DLVIVSVGVSPNPLV 690 (752)
T ss_pred HHcCCEEEecCcceEEEECC-CCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEEC-CEEEECcCCCCCccc
Confidence 35689999999999997654 46899998741 134467888 479999996655433
No 283
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=21.60 E-value=99 Score=24.01 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=24.2
Q ss_pred ceEEEecCCcCcHHHH-HHcCCCChhhhhhCCCCeeee
Q psy10349 239 KEVVLSAGAFFSPHLL-LLSGIGPREQLEQFNIPVLAD 275 (517)
Q Consensus 239 keVIlaaGai~tp~lL-l~SGIGp~~~L~~~GI~~~~d 275 (517)
|-+++|++.+.|..++ ..= ++.+++.||+....
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i----~~~~~~~gi~~~~~ 34 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKI----KKALKELGIEVEVS 34 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHH----HHHHHHTTECEEEE
T ss_pred CEEEECCChHHHHHHHHHHH----HHHHHhccCceEEE
Confidence 4578888899999988 444 56777888776544
No 284
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=21.57 E-value=38 Score=34.72 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=18.6
Q ss_pred CchhccccccCC---CCeEEEEccc
Q psy10349 1 GCVVTNRLTENP---DWKVLLLEAG 22 (517)
Q Consensus 1 G~v~A~rLae~~---g~~VlvlEaG 22 (517)
|+++|..|++ . |.+|+|||+-
T Consensus 15 Gl~~A~~L~~-~~~~G~~v~v~E~~ 38 (395)
T PRK05732 15 GATLALALSR-LSHGGLPVALIEAF 38 (395)
T ss_pred HHHHHHHhhh-cccCCCEEEEEeCC
Confidence 6789999987 6 9999999995
No 285
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=21.32 E-value=2.1e+02 Score=29.10 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.9
Q ss_pred CchhccccccCCCCeEEEEcccC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGD 23 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~ 23 (517)
|+.+|..|++ .|.+|+|||+.+
T Consensus 17 Gl~~A~~La~-~G~~V~liE~~~ 38 (391)
T PRK08020 17 GAALALGLAQ-HGFSVAVLEHAA 38 (391)
T ss_pred HHHHHHHHhc-CCCEEEEEcCCC
Confidence 6789999999 899999999975
No 286
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=21.26 E-value=35 Score=36.02 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=18.9
Q ss_pred CchhccccccCCCCeEEEEcccC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGD 23 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~ 23 (517)
|..+|.+|++ .|++|+|+|++.
T Consensus 16 G~~aA~~aa~-~G~~V~liE~~~ 37 (462)
T PRK06416 16 GYVAAIRAAQ-LGLKVAIVEKEK 37 (462)
T ss_pred HHHHHHHHHH-CCCcEEEEeccc
Confidence 5678899998 899999999864
No 287
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=21.01 E-value=1.7e+02 Score=29.91 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=19.5
Q ss_pred CchhccccccCCCCeEEEEccc
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAG 22 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG 22 (517)
|+++|..|++ .|.+|+|||+.
T Consensus 12 G~~aA~~La~-~G~~V~l~E~~ 32 (388)
T TIGR02023 12 GATAAETLAR-AGIETILLERA 32 (388)
T ss_pred HHHHHHHHHh-CCCcEEEEECC
Confidence 6889999999 89999999997
No 288
>PRK06834 hypothetical protein; Provisional
Probab=20.98 E-value=38 Score=36.18 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.8
Q ss_pred CchhccccccCCCCeEEEEcccCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDE 24 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~ 24 (517)
|+++|..|++ .|.+|+|||+-+.
T Consensus 15 Gl~lA~~La~-~G~~v~vlEr~~~ 37 (488)
T PRK06834 15 GLMLAGELAL-AGVDVAIVERRPN 37 (488)
T ss_pred HHHHHHHHHH-CCCcEEEEecCCC
Confidence 6899999999 8999999998764
No 289
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=20.60 E-value=35 Score=35.70 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.6
Q ss_pred CchhccccccCCCCeEEEEcccC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGD 23 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~ 23 (517)
|+.+|.+|++ .|.+|+|||+|.
T Consensus 14 Gl~aA~~la~-~g~~v~vi~~~~ 35 (422)
T PRK05329 14 GLTAALAAAE-AGKRVALVAKGQ 35 (422)
T ss_pred HHHHHHHHHH-CCCcEEEEECCC
Confidence 5788999999 899999999984
No 290
>PRK05868 hypothetical protein; Validated
Probab=20.53 E-value=41 Score=34.44 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.5
Q ss_pred CchhccccccCCCCeEEEEcccCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDE 24 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~ 24 (517)
|+++|..|++ .|.+|.|+|+-+.
T Consensus 13 Gl~~A~~L~~-~G~~v~viE~~~~ 35 (372)
T PRK05868 13 GTAAAYWLGR-HGYSVTMVERHPG 35 (372)
T ss_pred HHHHHHHHHh-CCCCEEEEcCCCC
Confidence 6889999999 8999999999764
No 291
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=20.49 E-value=40 Score=35.54 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=18.4
Q ss_pred CchhccccccCCCCeEEEEcc
Q psy10349 1 GCVVTNRLTENPDWKVLLLEA 21 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEa 21 (517)
|+.+|.+|++ .|++|+|||+
T Consensus 13 Gl~aA~~la~-~G~~v~lie~ 32 (461)
T TIGR01350 13 GYVAAIRAAQ-LGLKVALVEK 32 (461)
T ss_pred HHHHHHHHHh-CCCeEEEEec
Confidence 5788999999 8999999998
No 292
>KOG2820|consensus
Probab=20.46 E-value=44 Score=33.57 Aligned_cols=57 Identities=16% Similarity=0.182 Sum_probs=37.6
Q ss_pred CCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHc
Q psy10349 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLS 257 (517)
Q Consensus 196 ~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~S 257 (517)
+..-+..++.+..|..+.+.++.+..++|... +|. .+.| |.+|+++||. +.+||-.|
T Consensus 163 ~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt-~gs--~Y~a-kkiI~t~GaW-i~klL~~~ 219 (399)
T KOG2820|consen 163 ARELGVIFRDGEKVKFIKFVDEEGNHVSVQTT-DGS--IYHA-KKIIFTVGAW-INKLLPTS 219 (399)
T ss_pred HHHcCeEEecCcceeeEeeccCCCceeEEEec-cCC--eeec-ceEEEEecHH-HHhhcCcc
Confidence 34568999999999999887444444444333 343 3567 4699999986 44555443
No 293
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=20.42 E-value=1.6e+02 Score=29.83 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.6
Q ss_pred CchhccccccCCCCeEEEEcccCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDE 24 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~ 24 (517)
|+.+|..|++ .|.+|+|||++.-
T Consensus 16 Gls~A~~La~-~G~~V~vie~~~~ 38 (387)
T COG0665 16 GLSAAYYLAE-RGADVTVLEAGEA 38 (387)
T ss_pred HHHHHHHHHH-cCCEEEEEecCcc
Confidence 6789999999 8899999999963
No 294
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=20.35 E-value=2.1e+02 Score=29.69 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=39.9
Q ss_pred ccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHHHHcCC
Q psy10349 194 PIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGI 259 (517)
Q Consensus 194 ~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lLl~SGI 259 (517)
..+++.++++++++.|.+|.-+ + ++ |.+ .+|+ ++.+ ..||+|.|..-...+|..+|+
T Consensus 187 ~~l~~~gV~v~~~~~v~~i~~~--~-~~--v~~-~~g~--~i~~-D~vi~a~G~~p~~~~l~~~gl 243 (427)
T TIGR03385 187 EELKKHEINLRLNEEVDSIEGE--E-RV--KVF-TSGG--VYQA-DMVILATGIKPNSELAKDSGL 243 (427)
T ss_pred HHHHHcCCEEEeCCEEEEEecC--C-CE--EEE-cCCC--EEEe-CEEEECCCccCCHHHHHhcCc
Confidence 3345668999999999999643 2 22 333 3454 4677 469999998877778877765
No 295
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=20.18 E-value=50 Score=33.81 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=16.7
Q ss_pred hccccccCCCCeEEEEcccC
Q psy10349 4 VTNRLTENPDWKVLLLEAGD 23 (517)
Q Consensus 4 ~A~rLae~~g~~VlvlEaG~ 23 (517)
+|..|++ .|++|+|||++.
T Consensus 1 ~A~~La~-~G~~V~vlE~~~ 19 (381)
T TIGR03197 1 TAYSLAR-RGWQVTLYEQDE 19 (381)
T ss_pred ChHHHHh-CCCeeEEEeCCC
Confidence 5889999 799999999974
No 296
>PRK14727 putative mercuric reductase; Provisional
Probab=20.14 E-value=1.4e+02 Score=31.63 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=36.1
Q ss_pred ccCCCCCeEEEcCcEEEEEEecCCCCeEEEEEEEeCCeEEEEEecceEEEecCCcCcHHHH
Q psy10349 194 PIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLL 254 (517)
Q Consensus 194 ~~~~~~nl~i~~~~~V~ri~~~~~~~~a~gV~~~~~g~~~~v~a~keVIlaaGai~tp~lL 254 (517)
..+++.+++|++++.|++|..++ +. +.+..++. ++.+ ..||+|.|..-...+|
T Consensus 236 ~~L~~~GV~i~~~~~V~~i~~~~--~~---~~v~~~~g--~i~a-D~VlvA~G~~pn~~~l 288 (479)
T PRK14727 236 ACFEKEGIEVLNNTQASLVEHDD--NG---FVLTTGHG--ELRA-EKLLISTGRHANTHDL 288 (479)
T ss_pred HHHHhCCCEEEcCcEEEEEEEeC--CE---EEEEEcCC--eEEe-CEEEEccCCCCCccCC
Confidence 33456789999999999997652 22 23332222 3667 5699999998777754
No 297
>PRK07538 hypothetical protein; Provisional
Probab=20.09 E-value=41 Score=34.90 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.6
Q ss_pred CchhccccccCCCCeEEEEcccCC
Q psy10349 1 GCVVTNRLTENPDWKVLLLEAGDE 24 (517)
Q Consensus 1 G~v~A~rLae~~g~~VlvlEaG~~ 24 (517)
|+++|..|++ .|.+|+|+|+.+.
T Consensus 12 Gl~~A~~L~~-~G~~v~v~E~~~~ 34 (413)
T PRK07538 12 GLTLALTLHQ-RGIEVVVFEAAPE 34 (413)
T ss_pred HHHHHHHHHh-CCCcEEEEEcCCc
Confidence 6889999999 8999999999764
Done!