RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10349
(517 letters)
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 547 bits (1411), Expect = 0.0
Identities = 141/545 (25%), Positives = 217/545 (39%), Gaps = 57/545 (10%)
Query: 1 GCVVTNRLTENPDWKVLLLEAG--DEENALTDIPETAHYLQF-TKFNWNFTTEFQPGACR 57
G VV RLTE+PD VL+LEAG DE + P A L + F+WN+TT Q G
Sbjct: 14 GNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQAG--- 70
Query: 58 GLNNERCPWPAGRAVGGASVINNNIYTRGNPNDFDRWLE-AGNVGWGYKDVLPYFKKSED 116
N +P GR +GG+S ++ + RG+ DFDR+ G+ GW + ++ + +K+E
Sbjct: 71 -YNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEM 129
Query: 117 IDVPE-------LKRSEYHGVGGYLNVDYSPYKSKLMDAFLESAPEVGLNL---TDYNSP 166
+ P HG G +++ + + L D L + E D +
Sbjct: 130 VVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQSEEFFFNPDMGTG 189
Query: 167 DGNVGFSRIQGTIQFGRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNTK-----RV 221
+G S ++ G+R S+S A+LRP RPN V+ A+V K++ T R
Sbjct: 190 H-PLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRC 248
Query: 222 FGVEFMKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADL-QVGE 280
+ V AKKEVVLSAG+ +P LL LSGIG L I + + VG
Sbjct: 249 VEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGR 308
Query: 281 NLQEHPAFASLAFTVNQKVGL-VSDRIFSNLAKETIK-AFTNQGWTTTLGCEGLGYVRTK 338
NL +H AF VN R S + + T G T L L ++R
Sbjct: 309 NLSDHLLL-PAAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPLTALIANHLAWLRLP 367
Query: 339 YNNYP------PGVPDIEYIFVPASLAIEEEKGGSLLRKTMGIPDRTFKELFRDVKNKDA 392
N+ P + ++ F
Sbjct: 368 SNSSIFQTFPDPAAGPNSAHWETIFS------------------NQWFHPAIPRPDTGSF 409
Query: 393 WSIWPMLMYPESRGYVRLKSADPMVYPAVQSNFFQDPLDLLRIVEGIKMVIELSKTNAFQ 452
S+ L+ P +RG ++L +++P P + + D+ +++ +K + A+
Sbjct: 410 MSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWA 469
Query: 453 KYKSKLSTRILPACKKHKYGSDDYWGCCVRQLTMQMHHQCGTCKMGPDGDRTAVVDPRLR 512
+ + P D +R + H GT M P G VVDP L+
Sbjct: 470 DFVIRP---FDPRL--RDPTDDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLK 524
Query: 513 VHGIK 517
V G+
Sbjct: 525 VKGVD 529
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 531 bits (1371), Expect = 0.0
Identities = 135/540 (25%), Positives = 220/540 (40%), Gaps = 52/540 (9%)
Query: 1 GCVVTNRLTENPDWKVLLLEAG---DEENALTDIPETAHYLQFTKFNWNFTTEFQPGACR 57
G V +LTENP KVL++E G + A+ + P + T + N+ T P
Sbjct: 36 GLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTV--PL--- 90
Query: 58 GLNNERCPWPAGRAVGGASVINNNIYTRGNPNDFDRWLEA-GNVGWGYKDVLPYFKKSED 116
+NN AG+ +GG+++IN + +TR + D W + G GW + ++ Y KK+E
Sbjct: 91 -INNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEA 149
Query: 117 IDVPELKR--------SEYHGVGGYLNV---DYSPYKSKLMDAFLESAPEVGLNLT-DYN 164
P + + HG G + D S +M A + + +G+ + D+
Sbjct: 150 ARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFL 209
Query: 165 SPDGNVGFSRIQGTIQF-GRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNT--KRV 221
G S I + R A++A+L P +R N ++ V KVL +
Sbjct: 210 CGH-PRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQA 268
Query: 222 FGVEFMKNNKKRV-VYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADLQVGE 280
GV F N V+AK EV+L+AG+ SP +L SGIG + L+Q N+ L DL VG
Sbjct: 269 VGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGI 328
Query: 281 NLQEHPAFASLAFTVNQKVGLVSDRIFSNLAKETIK--AFTNQGWTTTLGCEGLGYVRTK 338
N+Q+ +++ + +F ET A + T + +
Sbjct: 329 NMQDQTTT-TVSSRASSAGAGQGQAVFFANFTETFGDYAPQARDLLNTKLDQWAEETVAR 387
Query: 339 YNNYPPGVPDIEYIFVPASLAIEEEKGGSLLRKTMGIPDRTFKELFRDVKNKDAWSIWPM 398
+ ++Y L D F ELF D + K + +W
Sbjct: 388 GGFHNVTALKVQYENYRNWL---------------LDEDVAFAELFMDTEGKINFDLWD- 431
Query: 399 LMYPESRGYVRLKSADPMVYP-AVQSNFFQDPLDLLRIVEGIKMVIELSKTNAFQKYKSK 457
+ P +RG V + S+DP ++ A FF + DLL K+ +L+ A ++Y +
Sbjct: 432 -LIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAG 490
Query: 458 LSTRILPACKKHKYGSDDYWGCCVRQLTMQMHHQCGTCKMGPDGDRTAVVDPRLRVHGIK 517
LP + + W V Q H +C M + VVD +V+G +
Sbjct: 491 ---ETLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSSCSMMSR-ELGGVVDATAKVYGTQ 546
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 518 bits (1337), Expect = e-180
Identities = 131/551 (23%), Positives = 218/551 (39%), Gaps = 66/551 (11%)
Query: 1 GCVVTNRLTENPDWKVLLLEAG---DEENALTDIPETAHYLQFTKFNWNFTTEFQPGACR 57
G V RL ENP+ VL++EAG E+ P +A L+ +K++W + T
Sbjct: 18 GNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWAYKTTMVRR--- 74
Query: 58 GLNNERCPWPA--GRAVGGASVINNNIYTRGNPNDFDRWLEAGNVGWGYKDVLPYFKKSE 115
+ ER P G+ +GG+S +N + G+ FD+W E G W + ++PY +KS
Sbjct: 75 -DDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSA 133
Query: 116 DIDVPE---LKRSEYHGVGGYLNVDYSPYKSK---LMDAFLESAPEVGLNLT-DYNSPDG 168
E G GG + + ++ + + ++ +G L + +
Sbjct: 134 TYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQPLIENIYDGE- 192
Query: 169 NVGFSRIQGTIQFGRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFM- 227
G + TI G+R + + +PN ++ + +++I+ + GV +
Sbjct: 193 MDGLTHCCDTIYRGQRSGS----FLFVKNKPNITIVPEVHSKRLIINEADRTCKGVTVVT 248
Query: 228 KNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADL-QVGENLQEHP 286
+ +A +EV+LS G F +P LL+LSGIGP +L + I + D VG+NL +HP
Sbjct: 249 AAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHP 308
Query: 287 AFASLAFTVNQKVGLVSDRIFSNLAKETIKA---FTNQGWTTTLGCEGLGYVRTK----- 338
V G+ + ++ + + G + E +G+ R
Sbjct: 309 GV-PFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGLLELVGFPRIDKYLEK 367
Query: 339 ----------YNNYPPGVPDIEYIFVPASLAIEEEKGGSLLRKTMGIPDRTFKELFRDVK 388
P P + F + + F+ F K
Sbjct: 368 DAEYRKAKAANGGKDPFSPLGQPHFELDFV---------------CMFGTAFQWHFPTPK 412
Query: 389 NKDAWSIWPMLMYPESR-GYVRLKSADPMVYPAVQSNFFQDPLDLLRIVEGIKMVIE-LS 446
D ++ L+ P S G V L SADP P + NFF + LD++ + EGI+ + L
Sbjct: 413 TGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMREGIRFSYDLLF 472
Query: 447 KTNAFQKYKSKLSTRILPACKKHKYGSDDYWGCCVRQLTMQMHHQCGTCKMGPDGDRTAV 506
K F+ SD V H GT ++ + D V
Sbjct: 473 KGEGFKDLVES---EYPWE---MPLDSDKEMHRAVLDRCQTAFHPTGTARLSKNID-QGV 525
Query: 507 VDPRLRVHGIK 517
VDP+L+VHGIK
Sbjct: 526 VDPKLKVHGIK 536
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 517 bits (1333), Expect = e-180
Identities = 129/547 (23%), Positives = 207/547 (37%), Gaps = 65/547 (11%)
Query: 1 GCVVTNRLTENPDWKVLLLEAGDEE---NALTDIPETAHYLQFTKFNWNFTTEFQPGACR 57
G RLTENP+ VL++E+G E + + + + + + T +
Sbjct: 31 GLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETV-ELA--- 86
Query: 58 GLNNERCPWPAGRAVGGASVINNNIYTRGNPNDFDRWLEA-GNVGWGYKDVLPYFKKSED 116
NN+ +G +GG++++N +TR + D W GN GW + +V Y ++E
Sbjct: 87 -TNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAER 145
Query: 117 IDVPELKR--------SEYHGVGGYLNV---DYSPYKSKLMDAFLESAPEVGLNLT-DYN 164
P K+ + HGV G ++ D S ++ A + + + G+ D+
Sbjct: 146 ARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFG 205
Query: 165 SPDGNVGFSRIQGTIQ-FGRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPN--TKRV 221
D G S T+ R A++ +L P +RPN V+ V KVL+ N T R
Sbjct: 206 CGD-PHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRA 264
Query: 222 FGVEFM-KNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADLQVGE 280
GVEF VYAK EV+L+AG+ SP +L SGIG + LE I + DL VG
Sbjct: 265 VGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGL 324
Query: 281 NLQEHPAFASLAFTVNQKVGL---------VSDRIFSNLAKETIKAFTNQGWTTTLGCEG 331
NLQ+ ++ + ++ K T
Sbjct: 325 NLQDQTTA-TVRSRITSAGAGQGQAAWFATFNETFGDYSEKAHELLNTKLEQWAEEAVAR 383
Query: 332 LGYVRTKYNNYPPGVPDIEYIFVPASLAIEEEKGGSLLRKTMGIPDRTFKELFRDVKNKD 391
G+ T + V ++A E +
Sbjct: 384 GGFHNTTALLIQY--ENYRDWIVNHNVAYSELF----------------------LDTAG 419
Query: 392 AWSIWPMLMYPESRGYVRLKSADPMVY-PAVQSNFFQDPLDLLRIVEGIKMVIELSKTNA 450
S + P +RGYV + DP ++ A +F + LDLL ++ +S + A
Sbjct: 420 VASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGA 479
Query: 451 FQKYKSKLSTRILPACKKHKYGSDDYWGCCVRQLTMQMHHQCGTCKMGPDGDRTAVVDPR 510
Q Y + +P W + +H GTC M P + VVD
Sbjct: 480 MQTYFAG---ETIPGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMPK-EMGGVVDNA 535
Query: 511 LRVHGIK 517
RV+G++
Sbjct: 536 ARVYGVQ 542
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 462 bits (1192), Expect = e-159
Identities = 130/528 (24%), Positives = 219/528 (41%), Gaps = 72/528 (13%)
Query: 1 GCVVTNRLTENPDWKVLLLEAG-DEENALTDIPETAHY-LQFTKFNWNFTTEFQPGACRG 58
G V RL+E+P V L+EAG D+ + L + ++W++ E Q
Sbjct: 25 GAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEPQEN---- 80
Query: 59 LNNERCPWPAGRAVGGASVINNNIYTRGNPNDFDRWL-EAGNVGWGYKDVLPYFKKSEDI 117
N + +GG S N+ I D D W + G GW + P +K+ E
Sbjct: 81 -GNSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETN 139
Query: 118 DVPELKRSEYHGVGGYLNVDYSPYKSKLMDAFLESAPEVGLNLT-DYNSPDGNVGFSRIQ 176
+ + +HG G +++ P K A L++ + G+ G + Q
Sbjct: 140 EDAG-PDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQ 198
Query: 177 GTIQF-GRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKN--NKKR 233
+ G R S+S +++ PIVE+ NF ++ R +++ D +R GV+ + +
Sbjct: 199 INRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-ADRRCTGVDIVDSAFGHTH 257
Query: 234 VVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADL-QVGENLQEHPAFASLA 292
+ A+ EVVLS GA +P LL+LSGIGP L + I VL D VGE+LQ+HP +
Sbjct: 258 RLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEG-VVQ 316
Query: 293 FTVNQKVGLVSDRIFSNLAKETIKAFTNQGWTTTLGCEGLGYVRTKYNNYPPGV--PDIE 350
F Q + S + + E + T+ G+ PD+
Sbjct: 317 FEAKQPMVAESTQWW----------------------EIGIFTPTE-----DGLDRPDLM 349
Query: 351 YIFVPASLAIEEEKGGSLLRKTMGIPDRTFKELFRDVKNKDAWSIWPMLMYPESRGYVRL 410
+ + + G ++ +S+ P + + SRG VRL
Sbjct: 350 MHYGSVPFDMNTLRHG-------------------YPTTENGFSLTPNVTHARSRGTVRL 390
Query: 411 KSADPMVYPAVQSNFFQDP--LDLLRIVEGIKMVIELSKTNAFQKYKSKLSTRILPACKK 468
+S D P V +F DP D+ +V GI+ E++ A ++ + + P
Sbjct: 391 RSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGR---ELSPGV-- 445
Query: 469 HKYGSDDYWGCCVRQLTMQMHHQCGTCKMGPDGDRTAVVDPRLRVHGI 516
+ +D+ +R+ ++H GT +MG D + +DP LRV G+
Sbjct: 446 -EAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGV 492
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 461 bits (1188), Expect = e-159
Identities = 136/523 (26%), Positives = 225/523 (43%), Gaps = 70/523 (13%)
Query: 1 GCVVTNRLTENPDWKVLLLEAG-DEENALTDIPETAHYLQFTKFNWNFTTEFQPGACRGL 59
G ++ RL+E+PD +VLL+EAG + + P LQ ++W++ TE Q G
Sbjct: 29 GSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYRTEAQAG----T 84
Query: 60 NNERCPWPAGRAVGGASVINNNIYTRGNPNDFDRWLEA-GNVGWGYKDVLPYFKKSEDID 118
W GR +GG+S ++ Y RG+P+DF W++A G+ WG+ ++LP F+ ED
Sbjct: 85 AGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHP 144
Query: 119 VPELKRSEYHGVGGYLNV-DYSPYKSKLMDAFLESAPEVGLNLT-DYNSPDGNVGFSRIQ 176
+ HG GG L + + S L AF+E+ +GL +NS + +G +
Sbjct: 145 LGG---DGIHGKGGPLPIHLPADEVSPLARAFIEAGASLGLPRLEGHNSGE-MIGVTPNS 200
Query: 177 GTIQFGRRFSASQAFLRPIVE-RPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVV 235
I+ GRR +A+ A+L V R N ++ +RV ++ ++ +V +E + V
Sbjct: 201 LNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE--GNQVRSLEVVGRQGSAEV 258
Query: 236 YAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADL-QVGENLQEHPAFASLAFT 294
+A ++VL AGA SP LL+ SGIGP + L+ + L D+ +G NLQ+H A +
Sbjct: 259 FAD-QIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYA 317
Query: 295 VNQKVGLVSDRIFSNLAKETIKAFTNQGWTTTLGCEGLGYVRTKYNNYPPGVPDIEYIFV 354
+ V + E + Y+R + G P+I
Sbjct: 318 ARKPVPPSR----LQHS------------------ESMAYMRAD-SFTAAGQPEIVVGCG 354
Query: 355 PASLAIEEEKGGSLLRKTMGIPDRTFKELFRDVKNKDAWSIWPMLMYPESRGYVRLKSAD 414
A + E F A+S+ + +P SRG VR+ +
Sbjct: 355 VAPIVSES---------------------FPAPAAGSAYSLLFGITHPTSRGSVRISGPE 393
Query: 415 PMVYPAVQSNFFQDPLDLLRIVEGIKMVIELSKTNAFQKYKSKLSTRILPACKKHKYGSD 474
+ + Q D R ++ + + ++ + +LP S
Sbjct: 394 LGDRLIIDPAYLQTGRDRERFRRALEASRTIGHRDELAGWRER---ELLPGTPN----SA 446
Query: 475 DYWGCCVRQLTMQMHHQCGTCKMGPDGDRTAVVDPRLRVHGIK 517
+ + + HH CGTC+MG D D AVVD LR+ +
Sbjct: 447 AEMDDFIARSVITHHHPCGTCRMGKDPD--AVVDANLRLKALD 487
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 441 bits (1136), Expect = e-151
Identities = 110/528 (20%), Positives = 177/528 (33%), Gaps = 96/528 (18%)
Query: 1 GCVVTNRLTENPDWKVLLLEAGDEENALTDIPETAHYLQFTKFNWNFTTEFQPGACRGLN 60
GC + L+E +KVL+LE G A ++ ++ + + T + ++
Sbjct: 38 GCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERF----VS 91
Query: 61 NERCPWPAGRAVGGASVINNNIYTRGNPNDFDRWLEAGNVGWGYKDVLPYFKKSEDIDVP 120
+ GR +GG S+IN +Y R N + + V W V ++ ED V
Sbjct: 92 EDGIDNVRGRVLGGTSIINAGVYARANTSIYSAS----GVDWDMDLVNQTYEWVEDTIV- 146
Query: 121 ELKRSEYHGVGGYLNVDYSPYKSKLMDAFLESAPEVGLNLTDYNSPDGNVGFSRIQGTIQ 180
Y ++S AFLE+ ++ G T
Sbjct: 147 ------YKPNSQ-------SWQSVTKTAFLEAGVHPN---HGFSLDH-EEGTRITGSTFD 189
Query: 181 FGRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNT-KRVFGVEFMKNNK---KRVVY 236
A+ L N V A V K++ GV + +N + V
Sbjct: 190 NKGTRHAADELLNK-GNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVR 248
Query: 237 AKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADL-QVGENLQEHPAFASLAFTV 295
+K EV++SAG +P LLLLSG+GP L NIPV+ VG+ L ++P
Sbjct: 249 SKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRN------- 301
Query: 296 NQKVGLVSDRIFSNLAKETIKAFTNQGWTTTLGCEGLGYVRTKYNNYPPGVPDIEYIFVP 355
+ L I+ + + + + F P
Sbjct: 302 ----------FINILPPNPIEPTIVTVLGISNDFYQCSFSSLPF-------TTPPFGFFP 344
Query: 356 ASLAIEEEKGGSLLRKTMGIPDRTFKELFRDVKNKDAWSIWPMLMYPESRGYVRLK-SAD 414
+S + N + P S G + LK S++
Sbjct: 345 SS--------------------------SYPLPNSTFAHFASKVAGPLSYGSLTLKSSSN 378
Query: 415 PMVYPAVQSNFFQDPLDLLRIVEGIKMVIELSKTNAFQKYKSKLSTRILPACKKHKYG-- 472
V P V+ N++ + DL V G+K + EL T+A + YK + +
Sbjct: 379 VRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPK 438
Query: 473 ---SDDYWGCCVRQLTMQMHHQCGTCKMGPDGDRTAVVDPRLRVHGIK 517
D + R+ H G C +G V+D RV GI
Sbjct: 439 DQTDDAAFETFCRESVASYWHYHGGCLVG------KVLDGDFRVTGIN 480
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 375 bits (966), Expect = e-125
Identities = 98/546 (17%), Positives = 181/546 (33%), Gaps = 87/546 (15%)
Query: 1 GCVVTNRLTENPDWKVLLLEAGDEENALTD---IPETAHYLQFTKF-----NWNFTTEFQ 52
G + +RL+E KVLLLE G T + A TKF + T+
Sbjct: 19 GIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSN 77
Query: 53 PGACRGLNNERCPWPAGRAVGGASVINNNIYTRGNPNDFDRWLEAGNVGW--GYKDVLPY 110
P + AG VGG + +N +Y N DF +VGW + + PY
Sbjct: 78 PF----WWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS-----SSVGWPSSWTNHAPY 128
Query: 111 FKKSEDIDVPELKRSEYHGVGGYLNVDYSPYKSKLMDAFLESAPEVGLNLTDYNSPDGNV 170
K L +++ G ++ S ++ L+ + D + +
Sbjct: 129 TSKLSS----RLPSTDHPSTDGQRYLEQSF---NVVSQLLKGQGYNQATINDNPNYK-DH 180
Query: 171 GFSRIQGTIQFGRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKN- 229
F G+R +L+ + RPNF V V+ + ++ GV+
Sbjct: 181 VFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRN--GSQILGVQTNDPT 238
Query: 230 ---NKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADLQ--------- 277
N V K V+LSAGAF + +L SGIGP + ++ A
Sbjct: 239 LGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWIN 298
Query: 278 --VGENLQEHPAFASLAFTVNQKVGLVSDRIFSNLAKETIKA---FTNQGWTTTLGCEGL 332
VG N Q++P+ +L FT + + + A G +
Sbjct: 299 LPVGMNAQDNPSI-NLVFTHPSIDAYENWADVWSNPRPADAAQYLANQSGVFAGASPKLN 357
Query: 333 GYVRTKYNNYPPGVPDIEYIFVPASLAIEEEKGGSLLRKTMGIPDRTFKELFRDVKNKDA 392
+ ++ + P + ++ + T
Sbjct: 358 FWRAYSGSDGF--TRYAQGTVRPGAASVN---SSLPYNASQIF---TI------------ 397
Query: 393 WSIWPMLMYPESRGYVRLKSADPMVYPAVQSNFFQDPLDLLRIVEGIKMVI-ELSKTNAF 451
+++ + +SRG + + +A + + +P+D +++ + V+ +
Sbjct: 398 -TVY-LSTGIQSRGRIGIDAALR--GTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGL 453
Query: 452 QKYKSKLSTRILPACKKHKYGSDDYWGCCVRQLTMQMHHQCGTCKMGPDGDRTAVVDPRL 511
P + + + TM +H + +G ++AVVD +
Sbjct: 454 TMIT--------PD----VTQTLEEYVDAYDPATMNSNHWVSSTTIGSS-PQSAVVDSNV 500
Query: 512 RVHGIK 517
+V G
Sbjct: 501 KVFGTN 506
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 124 bits (313), Expect = 1e-30
Identities = 75/552 (13%), Positives = 137/552 (24%), Gaps = 68/552 (12%)
Query: 1 GCVVTNRLTENPDWKVLLLEAGDEENALTDIPETAHYLQFTKFNWNFTTEFQP-----GA 55
GC L +KV + + G+ ++ L + +++ K F Q
Sbjct: 58 GCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSV 116
Query: 56 CRGLNNERCPWPAGRAVGGASVINNNIYTRGNPNDFDRWLEAGNVG-----WG------- 103
P V N + + + VG W
Sbjct: 117 PVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTAWTCATPRFD 176
Query: 104 YKDVLPYFKKSEDIDVPELKRS-----EYHGVGGYL---NVDYSPYKSKLMDAFLESAPE 155
+ K D D E R Y G ++ ++ +KL + +
Sbjct: 177 REQRPLLVKDDADADDAEWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRDF 236
Query: 156 VGLNLTDYNSPDGNVGFSRIQGTIQFGRRFSASQAFLRPIVERPNFHVMKKARVLKVLID 215
+ L V +S Q F++ +V+ +
Sbjct: 237 QQIPLAATRRSPTFVEWSS-------ANTVFDLQNRPNTDAPEERFNLFPAVACERVVRN 289
Query: 216 PNTKRVFGVEF--MKNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVL 273
+ + + + + + A VL+AGA + LL+ SG G + N P L
Sbjct: 290 ALNSEIESLHIHDLISGDRFEIKADV-YVLTAGAVHNTQLLVNSGFGQLGRPNPANPPEL 348
Query: 274 ADLQVGENLQEHP-AFASLAFTVNQKVGLVSDRIFSNLAKET------IKAFTNQGWTTT 326
+G + E F + + SD E +
Sbjct: 349 LP-SLGSYITEQSLVFCQTVMSTELIDSVKSDMTIRGTPGELTYSVTYTPGASTNKHPDW 407
Query: 327 LGCEGLGYVRTKYNNYPPGVPDIEYIFVPASLAIEEEKGGSLLRKTMGIPDRTFKELFRD 386
+ ++ + P + V + R R
Sbjct: 408 WNEKVKNHMMQHQEDPLPIPFEDPEPQVTTLFQPSHPWHTQIHRDAFSYGAVQQSIDSRL 467
Query: 387 VKNKDAWSIWPMLMYPESRGYVRLKSADPMVYPAVQSNFFQDPLDLLRIVEGIKMVIELS 446
+ D E++ + K D P +F + E +
Sbjct: 468 I--VDWRFFGRTEPKEENKLWFSDKITDAYNMPQPTFDFRFPAGRTSKEAEDMM------ 519
Query: 447 KTNAFQKYKSKLSTRILPACKKHKYGSDDYWGCCVRQLTMQMHHQCGTCKMGPD-GDRTA 505
+ GS + + H GT +MG D +
Sbjct: 520 ----------TDMCVMSAKIGGFLPGSLPQFME-----PGLVLHLGGTHRMGFDEKEDNC 564
Query: 506 VVDPRLRVHGIK 517
V+ RV G K
Sbjct: 565 CVNTDSRVFGFK 576
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 99.4 bits (247), Expect = 2e-22
Identities = 48/332 (14%), Positives = 84/332 (25%), Gaps = 59/332 (17%)
Query: 1 GCVVTNRLTENPDWKVLLLEAGDEENALTDIPET--AHYLQFTKFNWNFTTEFQP----- 53
V RL E + L+LE G N + +W P
Sbjct: 17 AAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFL 75
Query: 54 -------------GACRGLNNERCPWPAGRAVGGASVINNNIYTRGNPNDFDRWLEAGNV 100
G +N ++ GR VGG S++N + + F+
Sbjct: 76 WLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEI---LPR 132
Query: 101 GWGYKDVLPYFKKSEDIDVPELKRSEYHGVGGYL-NVDYSPYKSKLMDAFLESAPEVGLN 159
+ YF ++ V K E A + GL
Sbjct: 133 VDSSEMYDRYFPRAN----------SMLRVNHIDTKWFEDTEWYKFARVSREQAGKAGLG 182
Query: 160 LTDY----------NSPDGNVGFSRIQGTIQFGRR---FSASQAFLRPIVERPNFHVMKK 206
G V S + + +G S + +L + +
Sbjct: 183 TVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTL 242
Query: 207 ARVLKVLIDPNTKRVFGVEFM---KNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGPRE 263
+V + + VE + + + L AG+ S LL+ +
Sbjct: 243 HQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRARDTGT- 301
Query: 264 QLEQFNIPVLADLQVGENLQEHPAFASLAFTV 295
+P L +VG + +
Sbjct: 302 ------LPNLNS-EVGAGWGPNGNIMTARANH 326
Score = 44.3 bits (104), Expect = 7e-05
Identities = 9/28 (32%), Positives = 10/28 (35%), Gaps = 6/28 (21%)
Query: 490 HQCGTCKMGPDGDRTAVVDPRLRVHGIK 517
H G C +G D RV G K
Sbjct: 442 HPLGGCVLG------KATDDYGRVAGYK 463
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 90.2 bits (223), Expect = 2e-19
Identities = 55/330 (16%), Positives = 89/330 (26%), Gaps = 58/330 (17%)
Query: 1 GCVVTNRLTENPDWKVLLLEAG-------------------DEENALTDIPETAHYLQFT 41
G V RLT+ ++E G D+ + F
Sbjct: 23 GAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFM 81
Query: 42 KFNWNFTTEFQPGACRGLNNERCPWPAGRAVGGASVINNNIYTRGNPNDFDRWLEAGNVG 101
F N + + G GR VGG S++N + N F+ L +
Sbjct: 82 GFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPS---V 138
Query: 102 WGYKDVLPYFKKSEDIDVPELKRSEYHGVGGYLNVDY-SPYKSKLMDAFLESAPEVGLNL 160
+ YF ++ GV + S K ++A G
Sbjct: 139 DSNEMYNKYFPRAN----------TGLGVNNIDQAWFESTEWYKFARTGRKTAQRSGFTT 188
Query: 161 T----------DYNSPDGNVGFSRIQGTIQFGRR---FSASQAFLRPIVERPNFHVMKKA 207
G V S + G + +G S + +L +
Sbjct: 189 AFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTITTLH 248
Query: 208 RVLKVLIDPNTKRVFGVEFM---KNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGPREQ 264
RV KV + +E + N V V +AG+ + LL+
Sbjct: 249 RVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLVSMKAQGH-- 306
Query: 265 LEQFNIPVLADLQVGENLQEHPAFASLAFT 294
+P L+ QVGE +
Sbjct: 307 -----LPNLSS-QVGEGWGNNGNIMVGRAN 330
Score = 35.9 bits (82), Expect = 0.034
Identities = 4/28 (14%), Positives = 6/28 (21%), Gaps = 6/28 (21%)
Query: 490 HQCGTCKMGPDGDRTAVVDPRLRVHGIK 517
H G + D R+
Sbjct: 447 HPLGGVLLN------KATDNFGRLPEYP 468
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 75.7 bits (185), Expect = 2e-14
Identities = 76/473 (16%), Positives = 138/473 (29%), Gaps = 152/473 (32%)
Query: 90 DFDRWLEAGNVGWGYKDVLPYFKKS--EDIDVPE--------LKRSEYHG---------- 129
DF E G + YKD+L F+ + ++ D + L + E
Sbjct: 8 DF----ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 130 -------------------VGGYLNVDYSPYKSKLMDAFLESAPEVGLNLTDYNSPDGNV 170
V L ++Y + LM + + Y
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINY-KF---LMSPIKTEQRQPSMMTRMYIE----- 114
Query: 171 GFSRIQGTIQFGRRFSASQAFLRPIVERPN-FHVMKKARVLKVLIDPNTK-RVFGVEFMK 228
Q R ++ +Q F + V R + +++A L L P + G +
Sbjct: 115 ---------QRDRLYNDNQVFAKYNVSRLQPYLKLRQA--LLEL-RPAKNVLIDG---VL 159
Query: 229 NNKKRV----VYAKKEVV---------LSAGAFFSPHLLLLSGIGPREQLEQF------N 269
+ K V +V L+ SP +L E L++ N
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-------EMLQKLLYQIDPN 212
Query: 270 IPVLADLQVGENLQEHPAFASLAFTVNQKVG----LVSDRIFSNLAKETIKAFTNQGWTT 325
+D L+ H A L + K LV + + + AF
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN---AKAWNAF------- 262
Query: 326 TLGCEGLGYVRTKYN---NYPPGVPDIEYIFVPASLAIEEEKGGSLLRKTMGIPDRT--- 379
L C+ L + T++ ++ S+ + ++ SLL K + +
Sbjct: 263 NLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 380 ------------FKELFRDVKNKDAWSIWPMLMYPESRGYVR--LKSADPMVYPAVQSNF 425
E RD W W + + + L +P Y + F
Sbjct: 321 EVLTTNPRRLSIIAESIRD--GLATWDNWKHVNCDKLTTIIESSLNVLEPAEY---RKMF 375
Query: 426 -----FQD----PLDLLRIV-------EGIKMVIELSKTNAFQKYKSKLSTRI 462
F P LL ++ + + +V +L K + +K + + I
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.8 bits (152), Expect = 2e-10
Identities = 77/492 (15%), Positives = 138/492 (28%), Gaps = 166/492 (33%)
Query: 21 AGDEENALTDIPE-TAHYLQFTKFNWNFTTEFQPGACRGLNNERCPWPAGRAVGGASVIN 79
A D+E T E +L + ++ +P G+ V+N
Sbjct: 49 AADDE--PTTPAELVGKFLGYV------SSLVEPS------------KVGQF---DQVLN 85
Query: 80 NNIYTRGNPNDFDRWLEAGNVGWGYKDV------LPYFKKSEDIDVPELKRSEYHGVGGY 133
+ +F+ GN D+ L + + EL ++
Sbjct: 86 LCL------TEFENCYLEGN------DIHALAAKLLQENDTTLVKTKELIKNYITA---- 129
Query: 134 LNVDYSPYKSKLMDAFLESAPEVGLNLTDYNSPDGNVGFSRI---QGTIQ--FG---RRF 185
+ P+ K A + +GN I QG F +
Sbjct: 130 RIMAKRPFDKKSNSALFRAVG------------EGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 186 SASQAFLRPIVERPNFHVMKKARVLKVLI--DPNTKRVF--GVEFMK--NNKKRVVYAKK 239
+ +++ A L LI + ++VF G+ ++ N K
Sbjct: 178 QTYHVLVGDLIKF-------SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT--PDK 228
Query: 240 EVVLSAGAFFS-PHLLLLSGIGPREQLEQFNIPVLADLQVGENLQEHPA--FASLAFTVN 296
+ +LS S P + ++ QL + + + L P + L
Sbjct: 229 DYLLSI--PISCPLIGVI-------QLAHYVV-------TAKLLGFTPGELRSYLKGATG 272
Query: 297 QKVGLVSDRI---------FSNLAKETIK-AFTNQGWTTTLGCEGLGYVRTKYNNYPPGV 346
GLV+ F ++ I F + +G Y YP
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLF----F---IGVRC-------YEAYPN-- 316
Query: 347 PDIEYIFVPASLAIEEEKGGSLLRKTMGIP-------DRTFKELFRDVK--NKDAWSIWP 397
+P S+ + + G+P + T +++ V N P
Sbjct: 317 -----TSLPPSILEDSLENN------EGVPSPMLSISNLTQEQVQDYVNKTNSHL----P 361
Query: 398 MLMYPESRGYVRLK-SADPMVYPAVQSNFFQDPLDLLRIV---EGIKMVIELSKTNA-FQ 452
+ + L A +V V P L + K L ++ F
Sbjct: 362 ----AGKQVEISLVNGAKNLV---VSGP----PQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 453 KYKSKLSTRILP 464
+ K K S R LP
Sbjct: 411 ERKLKFSNRFLP 422
Score = 45.0 bits (106), Expect = 6e-05
Identities = 46/341 (13%), Positives = 99/341 (29%), Gaps = 112/341 (32%)
Query: 128 HGVGGYLNVDYS--------PYKSKLMDAFLESAPEVGLNLTDYNSPDGNVG-FSRIQGT 178
HG ++++ S+L + F + PE + P + G
Sbjct: 13 HG-----SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG- 66
Query: 179 IQFGRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAK 238
+ +S VE + +VL + + F +++ N
Sbjct: 67 ------YVSSL------VEPSKVG--QFDQVLNLCLTE-----FENCYLEGN-------- 99
Query: 239 KEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADLQVGENLQEHPAFASLAFTVNQK 298
++ H L + + ++ ++ +N +
Sbjct: 100 -DI----------HALAAKLLQENDT------TLVKTKELIKN-----YITARIMAKRPF 137
Query: 299 VGLVSDRIFSNLAKETIKAFT---NQGWTTTLGCEGLGYV---RTKYNNYPPGVPDIEYI 352
+ +F + + + QG T Y R Y Y V D +
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGNTDD-------YFEELRDLYQTYHVLVGD---L 187
Query: 353 FVPASLAIEEEKGGSLLRKTMGIPDRTFKELFRDVKNKDAWSIWPMLMYPESR---GYVR 409
++ + E L+R T+ ++ F + ++ W L P + Y
Sbjct: 188 IKFSAETLSE-----LIRTTLD-AEKVFTQGL-NIL---EW-----LENPSNTPDKDY-- 230
Query: 410 LKSADPMVYPA---VQ-SNFF-------QDPLDLLRIVEGI 439
L S P+ P +Q +++ P +L ++G
Sbjct: 231 LLSI-PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 38.9 bits (91), Expect = 0.004
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 192 LRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAF 248
LR + +RV+K++++ + V G + + K VVL+ G +
Sbjct: 256 LRKAAKEQGIDTRLNSRVVKLVVNDD-HSVVGAVVHGKHTGYYMIGAKSVVLATGGY 311
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 38.5 bits (90), Expect = 0.005
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 190 AFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAF 248
L E+ RV ++ D RV G+ + K+ V A++ VVL+ G+F
Sbjct: 206 KPLVETAEKLGVRAEYDMRVQTLVTDDT-GRVVGIVAKQYGKEVAVRARRGVVLATGSF 263
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 37.0 bits (86), Expect = 0.013
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 196 VERPNFHVMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAF 248
+ N + R ++VL D V G+ K V+L+ G F
Sbjct: 265 AVKRNIDLRMNTRGIEVLKDDK-GTVKGILVKGMYKGYYWVKADAVILATGGF 316
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.017
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 16/41 (39%)
Query: 121 ELKRSEYHGVGGYLNVDYSPYKSKLMDAFLESAPEVGLNLT 161
LK+ + L + Y+ +SAP + + T
Sbjct: 21 ALKKLQ-----ASLKL-YAD----------DSAPALAIKAT 45
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 36.2 bits (84), Expect = 0.027
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 203 VMKKARVLKVLIDPNTKRVFGVEFMKNNKKRVVYAKKEVVLSAGAF 248
+ +RV+++L D + +V GV V VV++AG F
Sbjct: 272 IRLNSRVVRILEDAS-GKVTGVLVKGEYTGYYVIKADAVVIAAGGF 316
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein
biosynthesis, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Length = 471
Score = 31.9 bits (73), Expect = 0.56
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 432 LLRIVEGIKMVIELSKTNAF--QKYKSKLSTRILPACKKHKYGSDDYW 477
+ + E +K+V+E + +K +LS K GS + W
Sbjct: 178 VYDVFEEMKLVLERLFKLGVSSETFKVRLSMSDKSLIGKEFMGSKEEW 225
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A
{Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1
d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Length = 645
Score = 31.8 bits (73), Expect = 0.61
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 439 IKMVIELSKTNAFQKYKSKLSTRILPACKKHKYGSDDYW 477
+ M+I++ K F+ Y +LS R P K+ + DD W
Sbjct: 403 VNMIIDVYKDFGFEDYSFRLSYR-DPEDKEKYFDDDDMW 440
>3b4v_C Follistatin-like 3; ligand-inhibitor signalling complex, cleavage
on PAIR of BAS residues, glycoprotein, growth factor,
hormone, secreted; HET: NAG; 2.48A {Homo sapiens}
Length = 237
Score = 31.0 bits (69), Expect = 0.76
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 465 ACKKHKYGSDDYWGCCVRQLTMQMHHQCGTCKMGPDGDRTAVV 507
C+ H S Y G C + + + +C + G VV
Sbjct: 126 RCRGHPDLSVMYRGRCRKSCEHVVCPRPQSCVVDQTGSAHCVV 168
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION,
adenylate analog, deletion mutant, ligase; HET: TSB;
1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB:
1evk_A* 1fyf_A* 1kog_A*
Length = 401
Score = 29.1 bits (66), Expect = 3.7
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 435 IVEGIKMVIELSKTNAFQKYKSKLSTRILPACKKHKY-GSDDYW 477
+ I++V ++ T F+K KLSTR P K GSD+ W
Sbjct: 156 VNGCIRLVYDMYSTFGFEKIVVKLSTR--PE----KRIGSDEMW 193
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering,
endoplasmic reticulum, ER-golgi transport, membrane,
phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Length = 706
Score = 29.1 bits (64), Expect = 3.9
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 172 FSRIQGTIQFGRRFSASQAFLRPIVERPNFHVMKKARVLKVL---IDPNTKRVFGVEFMK 228
F++ G QF F + + L N+ M ++K+L DPN ++ E++K
Sbjct: 614 FNQ-NGLNQFLHDFKSLSSILSLPSHATNYKCMSLHELVKILKLKYDPNNQQFLNPEYIK 672
Query: 229 NNKKR 233
Sbjct: 673 TGNFT 677
>3sek_C Follistatin-related protein 3; protein-protein complex, TB domain,
cystine knot motif, TGF- fold, disulfide linked dimer,
follistatin domain (FSD); HET: NAG; 2.40A {Homo sapiens}
PDB: 2kcx_A
Length = 209
Score = 28.4 bits (62), Expect = 4.3
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 465 ACKKHKYGSDDYWGCCVRQLTMQMHHQCGTCKMGPDGDR 503
C+ H S Y G C + + + +C + G
Sbjct: 117 RCRGHPDLSVMYRGRCRKSCEHVVCPRPQSCVVDQTGSA 155
>2arp_F Follistatin; cystine knot, disulfide rich, EGF domain, kazal
domain, PROT complex, hormone-growth factor complex;
HET: 1PG; 2.00A {Rattus norvegicus}
Length = 152
Score = 27.9 bits (61), Expect = 5.1
Identities = 9/46 (19%), Positives = 13/46 (28%)
Query: 465 ACKKHKYGSDDYWGCCVRQLTMQMHHQCGTCKMGPDGDRTAVVDPR 510
CK+ Y G C + TC + + V R
Sbjct: 60 RCKEQPELEVQYQGKCKKTCRDVFCPGSSTCVVDQTNNAYCVTCNR 105
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati
translational regulation, protein/RNA, ligase-RNA
complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
d.104.1.1
Length = 642
Score = 28.7 bits (65), Expect = 5.5
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 439 IKMVIELSKTNAFQKYKSKLSTRILPACKKHKY-GSDDYW 477
I++V ++ T F+K KLSTR P K GSD+ W
Sbjct: 401 IRLVYDMYSTFGFEKIVVKLSTR--PE----KRIGSDEMW 434
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup
B}
Length = 156
Score = 27.4 bits (62), Expect = 7.8
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 105 KDVLPYFKKSEDIDVPELKR 124
KD+L Y E + + R
Sbjct: 91 KDLLKYMFNPEQFHLKSILR 110
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal,
alternative splicing, hydrolase, phosphoprotein,
polymorphism, thiol protease; 2.40A {Homo sapiens}
Length = 323
Score = 27.8 bits (60), Expect = 8.5
Identities = 24/187 (12%), Positives = 49/187 (26%), Gaps = 9/187 (4%)
Query: 312 KETIKAFTNQGWTTTLGCEGLGYVRTKYNNYPPGVPDIEYIFVPASLAIEEEKGGSLLRK 371
T K L + R + + + +YIFVP + E L
Sbjct: 84 CLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVP----VNESSHWYLAVI 139
Query: 372 TMGIPDRTFKELFRDVKNKDAWSIWPMLMYPESRGYVRLKSADPMVYPAVQSNFFQDPLD 431
+ E F ++ + + +R S + QS +
Sbjct: 140 CFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVP 199
Query: 432 LLRIVEGIKMVIELSKTNAFQKYKSKLSTRILPACKKHKYGSDDYWGCCVRQLTMQMHHQ 491
++++ K + Q L + + + + L ++ Q
Sbjct: 200 KKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTHRQFSKTNMVDLCPKVPKQ 259
Query: 492 -----CG 493
CG
Sbjct: 260 DNSSDCG 266
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 28.0 bits (63), Expect = 9.0
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 201 FHVMKKARVLKVLIDPNTKRV 221
A +KVL+ P+ +RV
Sbjct: 347 ISNPAAAGEVKVLVIPSAERV 367
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.427
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,259,035
Number of extensions: 512631
Number of successful extensions: 1228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1113
Number of HSP's successfully gapped: 35
Length of query: 517
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 419
Effective length of database: 3,965,535
Effective search space: 1661559165
Effective search space used: 1661559165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)