RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10349
(517 letters)
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 391
Score = 198 bits (503), Expect = 5e-59
Identities = 80/307 (26%), Positives = 130/307 (42%), Gaps = 27/307 (8%)
Query: 1 GCVVTNRLTENPDWKVLLLEAG---DEENALTDIPETAHYLQFTKFNWNFTTEFQPGACR 57
G V +LTENP KVL++E G + A+ + P + T + N+ T
Sbjct: 36 GLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVPL----- 90
Query: 58 GLNNERCPWPAGRAVGGASVINNNIYTRGNPNDFD-RWLEAGNVGWGYKDVLPYFKKSED 116
+NN AG+ +GG+++IN + +TR + D G GW + ++ Y KK+E
Sbjct: 91 -INNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEA 149
Query: 117 IDVPELKR--------SEYHGVGGYLNV---DYSPYKSKLMDAFLESAPEVGLNLTDYNS 165
P + + HG G + D S +M A + + +G+ +
Sbjct: 150 ARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFL 209
Query: 166 -PDGNVGFSRIQGTIQFGRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNT--KRVF 222
+ + R A++A+L P +R N ++ V KVL +
Sbjct: 210 CGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAV 269
Query: 223 GVEFMKNNKKRV-VYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADL--QVG 279
GV F N V+AK EV+L+AG+ SP +L SGIG + L+Q N+ L DL +
Sbjct: 270 GVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGIC 329
Query: 280 ENLQEHP 286
+
Sbjct: 330 SMMSREL 336
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
niger [TaxId: 5061]}
Length = 385
Score = 187 bits (476), Expect = 4e-55
Identities = 75/308 (24%), Positives = 123/308 (39%), Gaps = 26/308 (8%)
Query: 1 GCVVTNRLTENPDWKVLLLEAG---DEENALTDIPETAHYLQFTKFNWNFTTEFQPGACR 57
G RLTENP+ VL++E+G + + + + + + + T
Sbjct: 29 GLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVEL----- 83
Query: 58 GLNNERCPWPAGRAVGGASVINNNIYTRGNPNDFDRWLEAGNVGW-GYKDVLPYFKKSED 116
NN+ +G +GG++++N +TR + D W + +V Y ++E
Sbjct: 84 ATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAER 143
Query: 117 IDVPELKRSEYHG-----------VGGYLNVDYSPYKSKLMDAFLESAPEVGLNLT-DYN 164
P K+ D S ++ A + + + G+ D+
Sbjct: 144 ARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFG 203
Query: 165 SPDGNVGFSRIQGTIQFGRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPN--TKRVF 222
D + + R A++ +L P +RPN V+ V KVL+ N T R
Sbjct: 204 CGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAV 263
Query: 223 GVEFM-KNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADLQVG-- 279
GVEF VYAK EV+L+AG+ SP +L SGIG + LE I + DL VG
Sbjct: 264 GVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLC 323
Query: 280 ENLQEHPA 287
+ +
Sbjct: 324 SMMPKEMG 331
Score = 29.8 bits (66), Expect = 0.77
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 489 HHQCGTCKMGPDGDRTAVVDPRLRVHGIK 517
G C M P + VVD RV+G++
Sbjct: 317 DLPVGLCSMMPK-EMGGVVDNAARVYGVQ 344
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
(Prunus dulcis) [TaxId: 3755]}
Length = 351
Score = 173 bits (438), Expect = 5e-50
Identities = 78/347 (22%), Positives = 125/347 (36%), Gaps = 40/347 (11%)
Query: 1 GCVVTNRLTENPDWKVLLLEAGDEENALTDIPETAHYLQFTKFNWNFTTEFQPGACRGLN 60
GC + L+E +KVL+LE G A ++ ++ + + T + ++
Sbjct: 38 GCPLAATLSEK--YKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERF----VS 91
Query: 61 NERCPWPAGRAVGGASVINNNIYTRGNPNDFDRWLEAGNVGWGYKDVLPYFKKSEDIDVP 120
+ GR +GG S+IN +Y R N + + V W V ++ ED V
Sbjct: 92 EDGIDNVRGRVLGGTSIINAGVYARANTSIYSAS----GVDWDMDLVNQTYEWVEDTIVY 147
Query: 121 ELKRSEYHGVGGYLNVDYSPYKSKLMDAFLESAPEVGLNLTDYNSPDGNVGFSRIQGTIQ 180
+ + V + E G++ S D G T
Sbjct: 148 KPNSQSWQSVTKTAFL------------------EAGVHPNHGFSLDHEEGTRITGSTFD 189
Query: 181 FGRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNTK-RVFGVEFMKNN---KKRVVY 236
A+ L N V A V K++ GV + +N + V
Sbjct: 190 NKGTRHAADELLNKG-NSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVR 248
Query: 237 AKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADL-QVGENLQEHPAFASLAFTV 295
+K EV++SAG +P LLLLSG+GP L NIPV+ VG+ L T
Sbjct: 249 SKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQCLVGKVLDGDFRVTG 308
Query: 296 NQKVGLVSDRIFSNLAKETIKAFTNQGWTTTLG-CEGLGYVRTKYNN 341
+ +V F A QG+ LG G+ ++ + +
Sbjct: 309 INALRVVDGSTFPYT-----PASHPQGFYLMLGRYVGIKILQERSAS 350
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
fungus (Peniophora sp. SG) [TaxId: 204723]}
Length = 379
Score = 162 bits (409), Expect = 1e-45
Identities = 45/300 (15%), Positives = 83/300 (27%), Gaps = 30/300 (10%)
Query: 1 GCVVTNRLTENPDWKVLLLEAGDEENALTDIPETAHYLQFTKFNWNFTTEFQPGACRGLN 60
GC L +KV + + G+ ++ L + +++ K F Q
Sbjct: 16 GCTYARELVGAG-YKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSV 74
Query: 61 NERCPWPAGRAVGGASVINNNIYTRGNPNDFDRWLEA----------GNVGWGYKDVLPY 110
+ S + + R N L G + + P
Sbjct: 75 PVNTLV--VDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTHWTCATPR 132
Query: 111 FKKSEDIDVPELKRSEYHGVGGYLNVDYS---PYKSKLMDAFLESAPEVGLNLTDYNSPD 167
F + + P L + + + Y+ Y D F ES +
Sbjct: 133 FDREQR---PLLVKDDADADDAEWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLAEEYK 189
Query: 168 GNVGFSRIQGTIQF----GRRFSASQAFLRPIV------ERPNFHVMKKARVLKVLIDPN 217
G F +I +S++ F++ +V+ +
Sbjct: 190 GQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACERVVRNAL 249
Query: 218 TKRVFGVEFM-KNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLADL 276
+ + + R VL+AGA + LL+ SG G + N P L
Sbjct: 250 NSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLPS 309
Score = 35.3 bits (80), Expect = 0.013
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 490 HQCGTCKMGPD-GDRTAVVDPRLRVHGIK 517
G+ +MG D + V+ RV G K
Sbjct: 308 PSLGSHRMGFDEKEDNCCVNTDSRVFGFK 336
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC
family {Brevibacterium sterolicum [TaxId: 1702]}
Length = 370
Score = 143 bits (362), Expect = 5e-39
Identities = 50/314 (15%), Positives = 89/314 (28%), Gaps = 36/314 (11%)
Query: 1 GCVVTNRLTENPDWKVLLLEAGDEENALTDIPET-------------------AHYLQFT 41
G V RLT+ ++E G + + F
Sbjct: 19 GAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFM 77
Query: 42 KFNWNFTTEFQPGACRGLNNERCPWPAGRAVGGASVINNNIYTRGNPNDFDRWLEAGNVG 101
F N + + G GR VGG S++N + N F+ L + +
Sbjct: 78 GFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPSVDSN 137
Query: 102 WGYKDVLPYFKKSEDIDVPELKRSEYHGVGGYLNVDY-SPYKSKLMDAFLESAPEVGLNL 160
Y P ++ + E + + +S AF+ + +
Sbjct: 138 EMYNKYFPRANTGLGVNNIDQAWFESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMK 197
Query: 161 TDYNSPDGNVGFSRIQGTIQFGRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNTKR 220
+ G + S + +L + RV KV
Sbjct: 198 KEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTITTLHRVTKVAPAT--GS 255
Query: 221 VFGVEFMKNNKKRVVYAK-----KEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVLAD 275
+ V + +++ V A V +AG+ + LL+ Q ++P L+
Sbjct: 256 GYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLVSMK-------AQGHLPNLSS 308
Query: 276 LQVGENLQEHPAFA 289
QVGE A
Sbjct: 309 -QVGEGWGVLLNKA 321
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC
family {Streptomyces sp. [TaxId: 1931]}
Length = 367
Score = 138 bits (349), Expect = 3e-37
Identities = 42/316 (13%), Positives = 83/316 (26%), Gaps = 39/316 (12%)
Query: 1 GCVVTNRLTENPDWKVLLLEAGDEENALTDIPETAHYL--------------------QF 40
V RL E + L+LE G N +
Sbjct: 14 AAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFL 72
Query: 41 TKFNWNFTTEFQPGACRGLNNERCPWPAGRAVGGASVINNNIYTRGNPNDFDRWLEAGNV 100
N + G +N ++ GR VGG S++N + + F+
Sbjct: 73 WLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEI---LPR 129
Query: 101 GWGYKDVLPYFKKSEDI----DVPELKRSEYHGVGGYLNVDYSPYKSKLMDAFLESAPEV 156
+ YF ++ + + + K+ L F+ + +
Sbjct: 130 VDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEWYKFARVSREQAGKAGLGTVFVPNVYDF 189
Query: 157 GLNLTDYNSPDGNVGFSRIQGTIQFGRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDP 216
G + + + S + +L + + +V +
Sbjct: 190 GYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTK 249
Query: 217 NTKRVFGVEFM---KNNKKRVVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQFNIPVL 273
+ VE + + + L AG+ S LL+ + + +P L
Sbjct: 250 DGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRAR-------DTGTLPNL 302
Query: 274 ADLQVGENLQEHPAFA 289
+VG A
Sbjct: 303 NS-EVGAGWGCVLGKA 317
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
flavocytochrome cellobiose dehydrogenase (CDH),
FAD-binding domain {Fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 360
Score = 119 bits (299), Expect = 2e-30
Identities = 64/296 (21%), Positives = 100/296 (33%), Gaps = 24/296 (8%)
Query: 1 GCVVTNRLTENPDWKVLLLEAGDEENALTDIPETAHYLQ---FTKFNWNFTTE-FQPGAC 56
G + +RL+E KVLLLE G T A + TKF+ E +
Sbjct: 14 GIIAADRLSEAG-KKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSN 72
Query: 57 RGLNNERCPWPAGRAVGGASVINNNIYTRGNPNDFDRWLEAGNVGWGYKDVLPYFKKSED 116
+ AG VGG + +N +Y N DF + + PY K
Sbjct: 73 PFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSS---VGWPSSWTNHAPYTSKLSS 129
Query: 117 IDVPELKRSEYHGVGGYLNVDYSPYKSKLMDAFLESAPEVGLNLTDYNSPDGNVGFSRIQ 176
++ G Y ++ L+ + D + +V
Sbjct: 130 RLPST----DHPSTDGQR---YLEQSFNVVSQLLKGQGYNQATINDNPNYKDHVFGYSAF 182
Query: 177 GTIQFGRRFSASQAFLRPIVERPNFHVMKKARVLKVLIDPNTKRVFGVEF----MKNNKK 232
+ R + + + RPNF V V+ + ++ GV+ + N
Sbjct: 183 DFLNGKRAGPVATYL-QTALARPNFTFKTNVMVSNVVRN--GSQILGVQTNDPTLGPNGF 239
Query: 233 RVVYAKKEVVLSAGAFFSPHLLLLSGIGPREQLEQF--NIPVLADLQVGENLQEHP 286
V K V+LSAGAF + +L SGIGP + ++ N A L P
Sbjct: 240 IPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLP 295
Score = 35.8 bits (81), Expect = 0.011
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 486 MQMHHQCGTCKMGPDGDRTAVVDPRLRVHGI 516
++ G +G ++AVVD ++V G
Sbjct: 290 QWINLPVGMTTIGSS-PQSAVVDSNVKVFGT 319
>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger
[TaxId: 5061]}
Length = 196
Score = 99.4 bits (247), Expect = 1e-24
Identities = 39/216 (18%), Positives = 71/216 (32%), Gaps = 22/216 (10%)
Query: 281 NLQEHPAFASLAFTVNQKVGLVSDRIFSNLAKETIKAFTNQGWTTTLGCEGLGYVRTKYN 340
NLQ+ ++ + + ET ++ + + TK
Sbjct: 1 NLQDQTTA-TVRSRITSAGAGQGQAAWFATFNETFGDYSEKAHE---------LLNTKLE 50
Query: 341 NY-PPGVPDIEYIFVPASLAIEEEKGGSLLRKTMGIPDRTFKELFRDVKNKDAWSIWPML 399
+ V + A L E R + + + ELF D ++ +W +
Sbjct: 51 QWAEEAVARGGFHNTTALLIQYE-----NYRDWIVNHNVAYSELFLDTAGVASFDVWDL- 104
Query: 400 MYPESRGYVRLKSADPMV-YPAVQSNFFQDPLDLLRIVEGIKMVIELSKTNAFQKYKSKL 458
P +RGYV + DP + + A +F + LDLL ++ +S + A Q Y
Sbjct: 105 -LPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTY---F 160
Query: 459 STRILPACKKHKYGSDDYWGCCVRQLTMQMHHQCGT 494
+ +P W + +H GT
Sbjct: 161 AGETIPGDNLAYDADLSAWTEYIPYHFRPNYHGVGT 196
>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 196
Score = 98.7 bits (245), Expect = 1e-24
Identities = 42/217 (19%), Positives = 74/217 (34%), Gaps = 24/217 (11%)
Query: 281 NLQEHPAFASLAFTVNQK-VGLVSDRIFSNLAKETIKAFTNQGWTTTLGCEGLGYVRTKY 339
N+Q+ +++ + G F+N + + TK
Sbjct: 1 NMQDQTTT-TVSSRASSAGAGQGQAVFFANFTETFGDYAPQ----------ARDLLNTKL 49
Query: 340 NNYP-PGVPDIEYIFVPASLAIEEEKGGSLLRKTMGIPDRTFKELFRDVKNKDAWSIWPM 398
+ + V + V A E R + D F ELF D + K + +W +
Sbjct: 50 DQWAEETVARGGFHNVTALKVQYE-----NYRNWLLDEDVAFAELFMDTEGKINFDLWDL 104
Query: 399 LMYPESRGYVRLKSADPMVYPA-VQSNFFQDPLDLLRIVEGIKMVIELSKTNAFQKYKSK 457
P +RG V + S+DP ++ FF + DLL K+ +L+ A ++Y
Sbjct: 105 --IPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEY--- 159
Query: 458 LSTRILPACKKHKYGSDDYWGCCVRQLTMQMHHQCGT 494
+ LP + + W V Q H +
Sbjct: 160 FAGETLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSS 196
>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus
dulcis) [TaxId: 3755]}
Length = 170
Score = 74.4 bits (182), Expect = 2e-16
Identities = 36/162 (22%), Positives = 55/162 (33%), Gaps = 20/162 (12%)
Query: 351 YIFVPASLAIE-------------EEKGGSLLRKTMGIPDRTFKELFRDVKNKDAWSIWP 397
+I + IE + S L T P F + N
Sbjct: 9 FINILPPNPIEPTIVTVLGISNDFYQCSFSSLPFTTP-PFGFFPSSSYPLPNSTFAHFAS 67
Query: 398 MLMYPESRGYVRLK-SADPMVYPAVQSNFFQDPLDLLRIVEGIKMVIELSKTNAFQKYKS 456
+ P S G + LK S++ V P V+ N++ + DL V G+K + EL T+A + YK
Sbjct: 68 KVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKV 127
Query: 457 K-----LSTRILPACKKHKYGSDDYWGCCVRQLTMQMHHQCG 493
+ IL D + R+ H G
Sbjct: 128 EDLPGVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYHG 169
>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome
cellobiose dehydrogenase (CDH), substrate-binding domain
{Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}
Length = 181
Score = 66.4 bits (161), Expect = 2e-13
Identities = 23/217 (10%), Positives = 60/217 (27%), Gaps = 39/217 (17%)
Query: 281 NLQEHPAFASLAFTVNQKVGL--VSDRIFSNLAKETIKAFTNQ-GWTTTLGCEGLGYVRT 337
N Q++P+ +L FT +D + + + NQ G + +
Sbjct: 1 NAQDNPSI-NLVFTHPSIDAYENWADVWSNPRPADAAQYLANQSGVFAGASPKLNFWRAY 59
Query: 338 KYNNYPPGVPDIEYIFVPASLAIEEEKGGSLLRKTMGIPDRTFKELFRDVKNKDAWSIWP 397
++ + P + +
Sbjct: 60 SGSDGFT--RYAQGTVRPGAA---SVNSSLPYNASQIFT-----------------ITVY 97
Query: 398 MLMYPESRGYVRLKSADPMVYPAVQSNFFQDPLDLLRIVEGIKMVIELSKTNAFQKYKSK 457
+ +SRG + + + + + + +P+D +++ + V+ +
Sbjct: 98 LSTGIQSRGRIGIDA--ALRGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIP------- 148
Query: 458 LSTRILPACKKHKYGSDDYWGCCVRQLTMQMHHQCGT 494
T I P + + + + TM +H +
Sbjct: 149 GLTMITPDVTQ----TLEEYVDAYDPATMNSNHWVSS 181
>d3pmga2 c.84.1.1 (A:191-303) Phosphoglucomutase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 113
Score = 28.6 bits (63), Expect = 0.69
Identities = 7/46 (15%), Positives = 12/46 (26%), Gaps = 4/46 (8%)
Query: 469 HKYGSDDYWGCCVRQLTMQMHHQCGTCKMG----PDGDRTAVVDPR 510
+G + + G G DGDR ++
Sbjct: 64 EDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKH 109
>d1qsaa2 d.2.1.6 (A:451-618) 70 kDa soluble lytic transglycosylase,
SLT70 {Escherichia coli [TaxId: 562]}
Length = 168
Score = 27.9 bits (61), Expect = 1.7
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 373 MGIPDRTFKELFRDVKNKDAWSIWPMLMYPESRGYVR 409
P R L DA + + + E+RGYV+
Sbjct: 103 NAGPGRVRTWLGNSAGRIDAVAFVESIPFSETRGYVK 139
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia
coli [TaxId: 562]}
Length = 146
Score = 25.6 bits (56), Expect = 9.7
Identities = 6/51 (11%), Positives = 14/51 (27%)
Query: 305 RIFSNLAKETIKAFTNQGWTTTLGCEGLGYVRTKYNNYPPGVPDIEYIFVP 355
+ N+ K + + Y+ + + + E IF
Sbjct: 47 EVMGNVLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDR 97
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.427
Gapped
Lambda K H
0.267 0.0495 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,040,795
Number of extensions: 99794
Number of successful extensions: 249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 19
Length of query: 517
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 428
Effective length of database: 1,185,626
Effective search space: 507447928
Effective search space used: 507447928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)