BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10355
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 239 bits (611), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 109/133 (81%), Positives = 125/133 (93%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R+KGKTVEVGRAYFET++KHFTILDAPGHKSFVPNMIGG +QADLAVLVISARKGEF
Sbjct: 74 QEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 133
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGF++GGQTREHAMLAKTAGVKHL+VLINKMDDPTV WS RY ECK+K++P+LKK+GF
Sbjct: 134 ETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGF 193
Query: 129 NAAKDLSFMPCSG 141
N KD+ FMPCSG
Sbjct: 194 NPKKDIHFMPCSG 206
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 194 bits (494), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 86/138 (62%), Positives = 113/138 (81%), Gaps = 1/138 (0%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
++REKGKTVEVGRAYFET+ + F++LDAPGHK +V NMI G +QAD+ VLVISAR+GEFE
Sbjct: 101 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 160
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKL-GF 128
GF+RGGQTREHA+LA+T G+ HLVV+INKMD+P+V WSE RY EC DK+ +L+++ G+
Sbjct: 161 AGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGY 220
Query: 129 NAAKDLSFMPCSGELEKN 146
N+ D+ +MP S +N
Sbjct: 221 NSKTDVKYMPVSAYTGQN 238
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 136 bits (343), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 93/132 (70%), Gaps = 3/132 (2%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
++RE+G TV + ++F T R +FTI+DAPGH+ FVPN I G +QAD+A+L + FE
Sbjct: 225 EERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFE 284
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFN 129
+GFD GQT+EH +LA + G+ +L++ +NKMD+ V WS+ R+ E K K+LPYL +GF
Sbjct: 285 SGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN--VDWSQQRFEEIKSKLLPYLVDIGF- 341
Query: 130 AAKDLSFMPCSG 141
+++++P SG
Sbjct: 342 FEDNINWVPISG 353
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 136 bits (343), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 93/132 (70%), Gaps = 3/132 (2%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
++RE+G TV + ++F T R +FTI+DAPGH+ FVPN I G +QAD+A+L + FE
Sbjct: 91 EERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFE 150
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFN 129
+GFD GQT+EH +LA + G+ +L++ +NKMD+ V WS+ R+ E K K+LPYL +GF
Sbjct: 151 SGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN--VDWSQQRFEEIKSKLLPYLVDIGF- 207
Query: 130 AAKDLSFMPCSG 141
+++++P SG
Sbjct: 208 FEDNINWVPISG 219
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 133 bits (335), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 93/134 (69%), Gaps = 3/134 (2%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
L+ +RE+G T+++ FET + T++DAPGH+ F+ NMI GT+QAD A+L+I+ GE
Sbjct: 63 LKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGE 122
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127
FE G + GQTREHA+LA T GV+ L+V +NKMD +V W E+R+ E + ++KK+G
Sbjct: 123 FEAGISKDGQTREHALLAFTLGVRQLIVAVNKMD--SVKWDESRFQEIVKETSNFIKKVG 180
Query: 128 FNAAKDLSFMPCSG 141
+N K + F+P SG
Sbjct: 181 YN-PKTVPFVPISG 193
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 133 bits (334), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 91/134 (67%), Gaps = 1/134 (0%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
++++RE+G T+++ FET + FTI+DAPGH+ FV NMI G +QAD A+LV+SARKGE
Sbjct: 62 MKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGE 121
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127
FE G GQTREH +LA+T G++ ++V +NKMD P V + + RY + ++K LG
Sbjct: 122 FEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLG 181
Query: 128 FNAAKDLSFMPCSG 141
+ K + F+P S
Sbjct: 182 YQVDK-IPFIPVSA 194
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 133 bits (334), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 91/134 (67%), Gaps = 1/134 (0%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
++++RE+G T+++ FET + FTI+DAPGH+ FV NMI G +QAD A+LV+SARKGE
Sbjct: 65 MKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGE 124
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127
FE G GQTREH +LA+T G++ ++V +NKMD P V + + RY + ++K LG
Sbjct: 125 FEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLG 184
Query: 128 FNAAKDLSFMPCSG 141
+ K + F+P S
Sbjct: 185 YQVDK-IPFIPVSA 197
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 132 bits (332), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 89/132 (67%), Gaps = 1/132 (0%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
L+++RE+G T+ + FET + FTI+DAPGH+ FV NMI G +QAD A+LV+SA+KGE
Sbjct: 62 LKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGE 121
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127
+E G GQTREH +LAKT G+ L+V +NKMD + E RY E D++ +++ G
Sbjct: 122 YEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYG 181
Query: 128 FNAAKDLSFMPC 139
FN K + F+P
Sbjct: 182 FNTNK-VRFVPV 192
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 130 bits (327), Expect = 3e-31, Method: Composition-based stats.
Identities = 60/132 (45%), Positives = 90/132 (68%), Gaps = 3/132 (2%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
++RE+G TV + ++F T R +FTI+DAPGH+ FVPN I G +QAD A+L + FE
Sbjct: 91 EERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVDCSTNAFE 150
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFN 129
+GFD GQT+EH +LA + G+ +L++ NK D+ V WS+ R+ E K K+LPYL +GF
Sbjct: 151 SGFDLDGQTKEHXLLASSLGIHNLIIAXNKXDN--VDWSQQRFEEIKSKLLPYLVDIGF- 207
Query: 130 AAKDLSFMPCSG 141
+++++P SG
Sbjct: 208 FEDNINWVPISG 219
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 113 bits (283), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 86/140 (61%), Gaps = 8/140 (5%)
Query: 7 WL----RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVIS 62
WL ++R +G T++V FE+D+K + I DAPGH+ F+ MI G + AD AVLV+
Sbjct: 228 WLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVD 287
Query: 63 ARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPY 122
+ + FE GF GQTREHA L + G+ +VV +NK+D + WSE R+ E K+ + +
Sbjct: 288 SSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLD--LMSWSEDRFQEIKNIVSDF 345
Query: 123 L-KKLGFNAAKDLSFMPCSG 141
L K +GF + ++ F+P S
Sbjct: 346 LIKMVGFKTS-NVHFVPISA 364
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 58/93 (62%), Gaps = 7/93 (7%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
R++R +G T+ +ET ++H++ +D GH ++ NMI G AQ D A+LV+SA G
Sbjct: 54 REERARGITINTAHVEYETAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRM 113
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH +LA+ GV+++VV +NK+D
Sbjct: 114 R-------QTREHILLARQVGVRYIVVFMNKVD 139
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 10/100 (10%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
++R +G T+ +ET ++H++ +D PGH ++ NMI G AQ D A+LV+SA G
Sbjct: 55 EERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP 114
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINK---MDDPTVM 106
QTREH +LA+ GV ++VV +NK +DDP ++
Sbjct: 115 -------QTREHILLARQVGVPYIVVFMNKVDMVDDPELL 147
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 10/100 (10%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
++R +G T+ +ET ++H++ +D PGH ++ NMI G AQ D A+LV+SA G
Sbjct: 55 EERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP 114
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINK---MDDPTVM 106
QTREH +LA+ GV ++VV +NK +DDP ++
Sbjct: 115 -------QTREHILLARQVGVPYIVVFMNKVDMVDDPELL 147
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 10/100 (10%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
++R +G T+ +ET ++H++ +D PGH ++ NMI G AQ D A+LV+SA G
Sbjct: 55 EERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP 114
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINK---MDDPTVM 106
QTREH +LA+ GV ++VV +NK +DDP ++
Sbjct: 115 -------QTREHILLARQVGVPYIVVFMNKVDMVDDPELL 147
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 10/100 (10%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
++R +G T+ +ET ++H++ +D PGH ++ NMI G AQ D A+LV+SA G
Sbjct: 55 EERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP 114
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINK---MDDPTVM 106
QTREH +LA+ GV ++VV +NK +DDP ++
Sbjct: 115 -------QTREHILLARQVGVPYIVVFMNKVDMVDDPELL 147
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 10/100 (10%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
++R +G T+ +ET ++H++ +D PGH ++ NMI G AQ D A+LV+SA G
Sbjct: 55 EERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP 114
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINK---MDDPTVM 106
QTREH +LA+ GV ++VV +NK +DDP ++
Sbjct: 115 -------QTREHILLARQVGVPYIVVFMNKVDMVDDPELL 147
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 10/100 (10%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
++R +G T+ +ET ++H++ +D PGH ++ NMI G AQ D A+LV+SA G
Sbjct: 55 EERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP 114
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINK---MDDPTVM 106
QTREH +LA+ GV ++VV +NK +DDP ++
Sbjct: 115 -------QTREHILLARQVGVPYIVVFMNKVDMVDDPELL 147
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 10/100 (10%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
++R +G T+ +ET ++H++ +D PGH ++ NMI G AQ D A+LV+SA G
Sbjct: 55 EERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP 114
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINK---MDDPTVM 106
QTREH +LA+ GV ++VV +NK +DDP ++
Sbjct: 115 -------QTREHILLARQVGVPYIVVFMNKVDMVDDPELL 147
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 10/100 (10%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
++R +G T+ +ET ++H++ +D PGH ++ NMI G AQ D A+LV+SA G
Sbjct: 56 EERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP 115
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINK---MDDPTVM 106
QTREH +LA+ GV ++VV +NK +DDP ++
Sbjct: 116 -------QTREHILLARQVGVPYIVVFMNKVDMVDDPELL 148
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 10/100 (10%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
++R +G T+ +ET ++H++ +D PGH ++ NMI G AQ D A+LV+SA G
Sbjct: 55 EERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP 114
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINK---MDDPTVM 106
QTREH +LA+ GV ++VV +NK +DDP ++
Sbjct: 115 -------QTREHILLARQVGVPYIVVFMNKVDMVDDPELL 147
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 10/100 (10%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
++R +G T+ +ET ++H++ +D PGH ++ NMI G AQ D A+LV+SA G
Sbjct: 55 EERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP 114
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINK---MDDPTVM 106
QTREH +LA+ GV ++VV +NK +DDP ++
Sbjct: 115 -------QTREHILLARQVGVPYIVVFMNKVDMVDDPELL 147
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 10/134 (7%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
L+ +RE+G T++V YF T ++ F I D PGH+ + N G + DLA++++ AR G
Sbjct: 82 LQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNXATGASTCDLAIILVDARYG- 140
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127
+T QTR H+ +A G+KH+VV INK D + E + K L + + +
Sbjct: 141 VQT------QTRRHSYIASLLGIKHIVVAINKXD--LNGFDERVFESIKADYLKFAEGIA 192
Query: 128 FNAAKDLSFMPCSG 141
F +F+P S
Sbjct: 193 FKPTT-XAFVPXSA 205
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
++R +G T+ + T +H+ D PGH +V NMI GTA D +LV++A G
Sbjct: 46 EERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMP 105
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH +LA+ GV+H+VV +NK D
Sbjct: 106 -------QTREHLLLARQIGVEHVVVYVNKAD 130
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
+++ +G T+ ++T +H+ +D PGH +V NMI G AQ D A+LV++A G
Sbjct: 339 EEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 398
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH +L + GV +++V +NK D
Sbjct: 399 -------QTREHILLGRQVGVPYIIVFLNKCD 423
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
+++ +G T+ ++T +H+ +D PGH +V NMI G AQ D A+LV++A G
Sbjct: 46 EEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 105
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH +L + GV +++V +NK D
Sbjct: 106 -------QTREHILLGRQVGVPYIIVFLNKCD 130
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
+++ +G T+ ++T +H+ +D PGH +V NMI G AQ D A+LV++A G
Sbjct: 55 EEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 114
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH +L + GV +++V +NK D
Sbjct: 115 -------QTREHILLGRQVGVPYIIVFLNKCD 139
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
+++ +G T+ ++T +H+ +D PGH +V NMI G AQ D A+LV++A G
Sbjct: 55 EEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 114
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH +L + GV +++V +NK D
Sbjct: 115 -------QTREHILLGRQVGVPYIIVFLNKCD 139
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
+++ +G T+ ++T +H+ +D PGH +V NMI G AQ D A+LV++A G
Sbjct: 54 EEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 113
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH +L + GV +++V +NK D
Sbjct: 114 -------QTREHILLGRQVGVPYIIVFLNKCD 138
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
+++ +G T+ ++T +H+ +D PGH +V NMI G AQ D A+LV++A G
Sbjct: 54 EEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 113
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH +L + GV +++V +NK D
Sbjct: 114 -------QTREHILLGRQVGVPYIIVFLNKCD 138
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
+++ +G T+ ++T +H+ +D PGH +V NMI G AQ D A+LV++A G
Sbjct: 54 EEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 113
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH +L + GV +++V +NK D
Sbjct: 114 -------QTREHILLGRQVGVPYIIVFLNKCD 138
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
+++ +G T+ ++T +H+ +D PGH +V NMI G AQ D A+LV++A G
Sbjct: 339 EEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 398
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH +L + GV +++V +NK D
Sbjct: 399 -------QTREHILLGRQVGVPYIIVFLNKCD 423
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
++R +G T+ + T +H+ D PGH +V N I GTA D +LV++A G
Sbjct: 57 EERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNXITGTAPLDGCILVVAANDGPXP 116
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH +LA+ GV+H+VV +NK D
Sbjct: 117 -------QTREHLLLARQIGVEHVVVYVNKAD 141
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFD 73
+G T+ ++T +H+ +D PGH +V NMI G AQ D A+LV++A G
Sbjct: 44 RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP---- 99
Query: 74 RGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH +L + GV +++V +NK D
Sbjct: 100 ---QTREHILLGRQVGVPYIIVFLNKCD 124
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR 74
G T+ ++T +H+ +D PGH +V NMI G AQ D A+LV++A G
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP----- 55
Query: 75 GGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH +L + GV +++V +NK D
Sbjct: 56 --QTREHILLGRQVGVPYIIVFLNKCD 80
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR 74
G T+ ++T +H+ +D PGH +V NMI G AQ D A+LV++A G
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDGPMP----- 55
Query: 75 GGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH +L + GV +++V +NK D
Sbjct: 56 --QTREHILLGRQVGVPYIIVFLNKCD 80
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 19/132 (14%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
L + +++G T+++G + F+ + T++DAPGH + ++ DLA++V+ A++G
Sbjct: 51 LPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGP 110
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP---------TVMWS--EARYNECK 116
QT EH ++ + ++V+I K D+ +M S ++ +N
Sbjct: 111 -------KTQTGEHMLILDHFNIP-IIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKN 162
Query: 117 DKILPYLKKLGF 128
I+P K GF
Sbjct: 163 SSIIPISAKTGF 174
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89
+ + +DAPGH+ + M+ G A D A+LV++A + F + QTREH + G
Sbjct: 87 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE-----PFPQ-PQTREHFVALGIIG 140
Query: 90 VKHLVVLINKMDDPTVMWSEARYNECK 116
VK+L+++ NK+D + + ++Y + K
Sbjct: 141 VKNLIIVQNKVDVVSKEEALSQYRQIK 167
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89
+ + +DAPGH+ + M+ G A D A+LV++A + F + QTREH + G
Sbjct: 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE-----PFPQ-PQTREHFVALGIIG 128
Query: 90 VKHLVVLINKMDDPTVMWSEARYNECK 116
VK+L+++ NK+D + + ++Y + K
Sbjct: 129 VKNLIIVQNKVDVVSKEEALSQYRQIK 155
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89
+ + +DAPGH+ + M+ G A D A+LV++A + F + QTREH + G
Sbjct: 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE-----PFPQ-PQTREHFVALGIIG 139
Query: 90 VKHLVVLINKMDDPTVMWSEARYNECK 116
VK+L+++ NK+D + + ++Y + K
Sbjct: 140 VKNLIIVQNKVDVVSKEEALSQYRQIK 166
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89
+ + +DAPGH+ + M+ G A D A+LV++A + F + QTREH + G
Sbjct: 81 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE-----PFPQ-PQTREHFVALGIIG 134
Query: 90 VKHLVVLINKMDDPTVMWSEARYNECK 116
VK+L+++ NK+D + + ++Y + K
Sbjct: 135 VKNLIIVQNKVDVVSKEEALSQYRQIK 161
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 13/117 (11%)
Query: 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89
+ + +D+PGH++ + M+ G + D A+LVI+A + + QT+EH M + G
Sbjct: 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQP------QTKEHLMALEILG 134
Query: 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKN 146
+ ++++ NK+D + E + E ++I ++K A++ +P S E N
Sbjct: 135 IDKIIIVQNKID----LVDEKQAEENYEQIKEFVKG---TIAENAPIIPISAHHEAN 184
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
+ ++ G T +G + K T LD PGH++F G D+ +LV++A G
Sbjct: 33 VTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGV 92
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPT-----VMWSEARYN 113
QT E AK A V ++V INKMD P VM YN
Sbjct: 93 MP-------QTVEAINHAKAANVP-IIVAINKMDKPEANPDRVMQELMEYN 135
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89
+ + +DAPGH++ + M+ G + D A+LVI+A + QTREH M + G
Sbjct: 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRP------QTREHLMALQIIG 136
Query: 90 VKHLVVLINKMD 101
K++++ NK++
Sbjct: 137 QKNIIIAQNKIE 148
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89
+ + +DAPGH++ + M+ G + D A+LVI+A + QTREH M + G
Sbjct: 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRP------QTREHLMALQIIG 136
Query: 90 VKHLVVLINKMD 101
K++++ NK++
Sbjct: 137 QKNIIIAQNKIE 148
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFET 70
+R++G T++ G F+ + I+D PGH F+ + + D A+L+ISA+ G
Sbjct: 48 ERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDG---- 103
Query: 71 GFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKI 119
QTR + G+ + INK+D + S Y + K+K+
Sbjct: 104 ---VQAQTRILFHALRKMGIP-TIFFINKIDQNGIDLSTV-YQDIKEKL 147
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89
+ + +D+PGH++ + M+ G + D A+LVI+A + QTREH M + G
Sbjct: 84 RRVSFIDSPGHEALMTTMLAGASLMDGAILVIAANEPCPRP------QTREHLMALQIIG 137
Query: 90 VKHLVVLINKMD 101
K++++ NK++
Sbjct: 138 QKNIIIAQNKIE 149
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89
+ + +DAPGH++ + G + D A+LVI+A + QTREH + G
Sbjct: 83 RRVSFIDAPGHEALXTTXLAGASLXDGAILVIAANEPCPRP------QTREHLXALQIIG 136
Query: 90 VKHLVVLINKMD 101
K++++ NK++
Sbjct: 137 QKNIIIAQNKIE 148
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 32 FTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVK 91
T LD PGH +F GT D+ +LV++A G + QT E AK A V
Sbjct: 54 ITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMK-------QTVESIQHAKDAHVP 106
Query: 92 HLVVLINKMDDPTVMWSEARYNECKDKILPY 122
+V+ INK D +EA + K ++L Y
Sbjct: 107 -IVLAINKCDK-----AEADPEKVKKELLAY 131
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
Query: 27 TDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK 86
D T+LD K+ V M G + ++S GE T D G AM A+
Sbjct: 13 VDHGKTTLLDKL-RKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRAR 71
Query: 87 TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYL 123
V +V+L+ DD + + KD +P +
Sbjct: 72 GTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIV 108
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
G T +G + ET+ T LD PGH +F G D+ VLV++A G
Sbjct: 36 GITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDG 87
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
W+ +RE+G +V F + +LD PGH+ F + D A++VI A KG
Sbjct: 77 WMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKG 136
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTR+ + + ++ +NKMD
Sbjct: 137 V-------EAQTRKLMDVCRMRATP-VMTFVNKMD 163
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 21/148 (14%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
W+ ++++G ++ F +LD PGH+ F + D ++VI A KG
Sbjct: 59 WMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG 118
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD----DPTVMWSEARYNECKDKILPY 122
DR + E L T ++ +NK+D DP + E NE K P
Sbjct: 119 V----EDRTRKLMEVTRLRDTP----ILTFMNKLDRDIRDPMELLDEVE-NELKIGCAPI 169
Query: 123 LKKLG--------FNAAKDLSFMPCSGE 142
+G ++ KD +++ SG+
Sbjct: 170 TWPIGCGKLFKGVYHLYKDETYLYQSGK 197
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 21/148 (14%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
W+ ++++G ++ F +LD PGH+ F + D ++VI A KG
Sbjct: 59 WMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG 118
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD----DPTVMWSEARYNECKDKILPY 122
DR + E L T ++ +NK+D DP + E NE K P
Sbjct: 119 V----EDRTRKLMEVTRLRDTP----ILTFMNKLDRDIRDPMELLDEVE-NELKIGCAPI 169
Query: 123 LKKLG--------FNAAKDLSFMPCSGE 142
+G ++ KD +++ SG+
Sbjct: 170 TWPIGCGKLFKGVYHLYKDETYLYQSGK 197
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 33.5 bits (75), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 34 ILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHL 93
+LDAPG+ FV + G AD A++ +SA G + G +R E L +
Sbjct: 78 LLDAPGYGDFVGEIRGALEAADAALVAVSAEAG-VQVGTERAWTVAERLGLPR------- 129
Query: 94 VVLINKMD 101
+V++ K+D
Sbjct: 130 MVVVTKLD 137
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 32.7 bits (73), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
W ++++G +V F +LD PGH F + D A+ VI A KG
Sbjct: 59 WXELEKQRGISVTTSVXQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKG 118
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 32.7 bits (73), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 55/141 (39%), Gaps = 17/141 (12%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
W+ Q++++G T+ + I+D PGH F + D AV V+ A+ G
Sbjct: 52 WMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSG 111
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKI------- 119
QT A T GV +V +NKMD + E + D++
Sbjct: 112 -------VEPQTETVWRQATTYGVPR-IVFVNKMDKLGANF-EYSVSTLHDRLQANAAPI 162
Query: 120 -LPYLKKLGFNAAKDLSFMPC 139
LP + F A DL M C
Sbjct: 163 QLPIGAEDEFEAIIDLVEMKC 183
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 32.7 bits (73), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 55/141 (39%), Gaps = 17/141 (12%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
W+ Q++++G T+ + I+D PGH F + D AV V+ A+ G
Sbjct: 52 WMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSG 111
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKI------- 119
QT A T GV +V +NKMD + E + D++
Sbjct: 112 -------VEPQTETVWRQATTYGVPR-IVFVNKMDKLGANF-EYSVSTLHDRLQANAAPI 162
Query: 120 -LPYLKKLGFNAAKDLSFMPC 139
LP + F A DL M C
Sbjct: 163 QLPIGAEDEFEAIIDLVEMKC 183
>pdb|1M11|2 Chain 2, Structural Model Of Human Decay-accelerating Factor Bound
To Echovirus 7 From Cryo-electron Microscopy
Length = 254
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 44 VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP 103
VP G +Q D V ++ KGE F+ T EH + + V + N P
Sbjct: 120 VPEAEMGCSQTDKEVAAMNLTKGEAAHKFEPTKTTGEHTVQSIVCNAGMGVGVGNLTIYP 179
Query: 104 TVMWSEARYNECKDKILPYLKKL 126
W R N C ++PY+ +
Sbjct: 180 H-QWINLRTNNCATIVMPYVNSV 201
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 30.8 bits (68), Expect = 0.32, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 35 LDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
+D PGH++F G A ADLA+L++ +G
Sbjct: 75 IDTPGHEAFTTLRKRGGALADLAILIVDINEG 106
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 35 LDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
+D PGH++F G A ADLA+L++ +G
Sbjct: 75 IDTPGHEAFTTLRKRGGALADLAILIVDINEG 106
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 54/141 (38%), Gaps = 17/141 (12%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
W+ Q++++G T+ + I+D PGH + D AV V+ A+ G
Sbjct: 52 WMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSG 111
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKI------- 119
QT A T GV +V +NKMD + E + D++
Sbjct: 112 -------VEPQTETVWRQATTYGVPR-IVFVNKMDKLGANF-EYSVSTLHDRLQANAAPI 162
Query: 120 -LPYLKKLGFNAAKDLSFMPC 139
LP + F A DL M C
Sbjct: 163 QLPIGAEDEFEAIIDLVEMKC 183
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 54/141 (38%), Gaps = 17/141 (12%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
W+ Q++++G T+ + I+D PGH + D AV V+ A+ G
Sbjct: 52 WMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSG 111
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKI------- 119
QT A T GV +V +NKMD + E + D++
Sbjct: 112 -------VEPQTETVWRQATTYGVPR-IVFVNKMDKLGANF-EYSVSTLHDRLQANAAPI 162
Query: 120 -LPYLKKLGFNAAKDLSFMPC 139
LP + F A DL M C
Sbjct: 163 QLPIGAEDEFEAIIDLVEMKC 183
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
++ Q+RE+G T+ I+DAPGH F + D A++V + +G
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 29.6 bits (65), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
++ Q+RE+G T+ I+DAPGH F + D A++V + +G
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 29.3 bits (64), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
++ Q+RE+G T+ I+DAPGH F + D A++V + +G
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|3IYP|C Chain C, The Interaction Of Decay-Accelerating Factor With
Echovirus 7
pdb|2X5I|B Chain B, Crystal Structure Echovirus 7
Length = 260
Score = 29.3 bits (64), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 44 VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA------GVKHLVVLI 97
VP G +Q D V ++ KGE F+ EH + + GV +L +
Sbjct: 126 VPEAEMGCSQTDKEVAAMNLTKGEAAHKFEPTKTNGEHTVQSIVCNAGMGVGVGNLTIYP 185
Query: 98 NKMDDPTVMWSEARYNECKDKILPYLKKL 126
++ W R N C ++PY+ +
Sbjct: 186 HQ-------WINLRTNNCATIVMPYVNSV 207
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
++ Q+RE+G T+ I+D PGH F + D A++V + +G
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
++ Q+RE+G T+ I+D PGH F + D A++V + +G
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
++ Q+RE+G T+ I+D PGH F + D A++V + +G
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
++ Q+RE+G T+ I+D PGH F + D A++V + +G
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
++ Q+RE+G T+ I+D PGH F + D A++V + +G
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 7 WLRQKREKGKTVEVG--RAYFETDRKHF-----TILDAPGHKSFVPNMIGGTAQADLAVL 59
W+ Q++E+G T+ A++ K + I+D PGH F + D AV+
Sbjct: 51 WMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVM 110
Query: 60 VISARKG 66
V A G
Sbjct: 111 VYCAVGG 117
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 7 WLRQKREKGKTVEVG--RAYFETDRKHF-----TILDAPGHKSFVPNMIGGTAQADLAVL 59
W+ Q++E+G T+ A++ K + I+D PGH F + D AV+
Sbjct: 52 WMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVM 111
Query: 60 VISARKG 66
V A G
Sbjct: 112 VYCAVGG 118
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 11 KREKGKTVE---VGRAYFETDRKHFTI--LDAPGHKSFVPNMIGGTAQADLAVLVISARK 65
+RE+G T++ V Y +D + + + +D PGH F + A + A+LV+ A +
Sbjct: 47 ERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQ 106
Query: 66 G 66
G
Sbjct: 107 G 107
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 11 KREKGKTVE---VGRAYFETDRKHFTI--LDAPGHKSFVPNMIGGTAQADLAVLVISARK 65
+RE+G T++ V Y +D + + + +D PGH F + A + A+LV+ A +
Sbjct: 47 ERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQ 106
Query: 66 G 66
G
Sbjct: 107 G 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,888,156
Number of Sequences: 62578
Number of extensions: 186923
Number of successful extensions: 565
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 460
Number of HSP's gapped (non-prelim): 78
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)