Query psy10355
Match_columns 156
No_of_seqs 143 out of 1053
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 15:48:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5256 TEF1 Translation elong 100.0 5.6E-31 1.2E-35 199.5 15.7 144 5-151 60-203 (428)
2 KOG0458|consensus 100.0 1.5E-28 3.2E-33 192.3 14.6 146 5-153 230-376 (603)
3 PTZ00141 elongation factor 1- 100.0 6.6E-28 1.4E-32 189.7 16.3 146 5-151 60-205 (446)
4 PLN00043 elongation factor 1-a 100.0 7.3E-28 1.6E-32 189.4 16.0 147 4-151 59-205 (447)
5 cd01883 EF1_alpha Eukaryotic e 99.9 1.3E-26 2.7E-31 167.5 16.2 148 4-152 51-198 (219)
6 cd01884 EF_Tu EF-Tu subfamily. 99.9 7.4E-26 1.6E-30 160.7 15.5 134 4-148 39-172 (195)
7 PF00009 GTP_EFTU: Elongation 99.9 3.4E-25 7.4E-30 156.6 13.6 134 5-151 43-179 (188)
8 COG2895 CysN GTPases - Sulfate 99.9 1.5E-25 3.2E-30 167.0 12.1 135 5-151 61-195 (431)
9 TIGR02034 CysN sulfate adenyly 99.9 5.1E-25 1.1E-29 171.9 15.6 136 4-151 54-189 (406)
10 PRK12317 elongation factor 1-a 99.9 1.7E-24 3.8E-29 170.0 15.7 139 4-152 58-198 (425)
11 cd04166 CysN_ATPS CysN_ATPS su 99.9 4.2E-24 9.1E-29 153.3 15.3 137 4-152 51-187 (208)
12 PRK05124 cysN sulfate adenylyl 99.9 6.3E-24 1.4E-28 168.3 15.9 138 4-152 81-218 (474)
13 TIGR00483 EF-1_alpha translati 99.9 2.2E-23 4.8E-28 163.8 15.6 141 5-152 60-200 (426)
14 PLN03126 Elongation factor Tu; 99.9 6.2E-23 1.3E-27 162.4 15.5 133 4-147 118-250 (478)
15 CHL00071 tufA elongation facto 99.9 5.7E-23 1.2E-27 160.6 14.9 134 4-148 49-182 (409)
16 PRK12736 elongation factor Tu; 99.9 6.7E-23 1.4E-27 159.5 15.2 131 4-145 49-179 (394)
17 TIGR00485 EF-Tu translation el 99.9 8.4E-23 1.8E-27 159.1 15.4 131 4-145 49-179 (394)
18 PRK05506 bifunctional sulfate 99.9 1.3E-22 2.7E-27 166.2 15.3 137 4-152 78-214 (632)
19 PRK12735 elongation factor Tu; 99.9 2.9E-22 6.3E-27 156.1 14.8 133 4-147 49-181 (396)
20 PRK00049 elongation factor Tu; 99.9 4E-22 8.7E-27 155.2 15.4 132 4-146 49-180 (396)
21 TIGR00475 selB selenocysteine- 99.9 3.2E-22 7E-27 162.0 15.2 134 5-151 25-158 (581)
22 PRK10512 selenocysteinyl-tRNA- 99.9 2.7E-22 5.8E-27 163.0 14.6 133 5-151 25-158 (614)
23 cd01889 SelB_euk SelB subfamil 99.9 5.2E-22 1.1E-26 140.6 14.3 136 5-151 29-178 (192)
24 KOG0459|consensus 99.9 7.9E-23 1.7E-27 154.6 10.3 149 4-152 131-279 (501)
25 COG0050 TufB GTPases - transla 99.9 2.1E-22 4.6E-27 147.3 12.0 128 5-143 50-177 (394)
26 PLN03127 Elongation factor Tu; 99.9 9.1E-22 2E-26 154.9 16.1 132 4-146 98-232 (447)
27 KOG0462|consensus 99.9 3.3E-22 7.1E-27 156.1 10.4 127 5-150 97-226 (650)
28 cd01885 EF2 EF2 (for archaea a 99.9 2.4E-21 5.3E-26 139.9 14.3 135 4-147 37-200 (222)
29 cd01891 TypA_BipA TypA (tyrosi 99.9 5.1E-21 1.1E-25 135.8 15.5 135 5-152 40-175 (194)
30 TIGR01394 TypA_BipA GTP-bindin 99.9 2.6E-21 5.7E-26 156.7 15.8 131 4-147 38-169 (594)
31 cd01888 eIF2_gamma eIF2-gamma 99.9 9.7E-22 2.1E-26 140.5 11.4 135 5-152 25-192 (203)
32 PTZ00327 eukaryotic translatio 99.9 9E-22 1.9E-26 155.0 11.2 134 5-152 59-226 (460)
33 cd04171 SelB SelB subfamily. 99.9 1E-20 2.2E-25 129.9 13.9 132 6-151 26-158 (164)
34 COG0481 LepA Membrane GTPase L 99.9 9E-22 2E-26 151.7 8.5 128 5-151 46-178 (603)
35 KOG0460|consensus 99.9 1.3E-20 2.8E-25 140.3 12.3 127 5-142 92-218 (449)
36 cd04165 GTPBP1_like GTPBP1-lik 99.9 1.4E-20 3E-25 136.3 12.2 135 5-151 35-215 (224)
37 COG3276 SelB Selenocysteine-sp 99.8 8.6E-21 1.9E-25 145.3 11.0 131 5-152 25-155 (447)
38 cd01890 LepA LepA subfamily. 99.8 4.6E-20 9.9E-25 128.8 13.6 128 5-151 37-169 (179)
39 cd01886 EF-G Elongation factor 99.8 2.3E-20 5E-25 138.6 12.5 123 4-144 38-160 (270)
40 PRK05433 GTP-binding protein L 99.8 2.3E-20 4.9E-25 151.6 13.5 129 4-151 43-176 (600)
41 TIGR01393 lepA GTP-binding pro 99.8 3.8E-20 8.1E-25 150.2 13.8 129 4-151 39-172 (595)
42 TIGR03680 eif2g_arch translati 99.8 4.2E-20 9.2E-25 144.4 13.2 134 5-151 29-188 (406)
43 PRK10218 GTP-binding protein; 99.8 8.9E-20 1.9E-24 147.9 15.0 130 5-147 43-173 (607)
44 COG0532 InfB Translation initi 99.8 3.8E-20 8.2E-25 144.7 11.7 121 13-150 35-161 (509)
45 COG1217 TypA Predicted membran 99.8 1.3E-19 2.8E-24 139.6 14.0 133 4-149 42-175 (603)
46 PRK04000 translation initiatio 99.8 1.2E-19 2.7E-24 141.9 12.4 134 5-151 34-193 (411)
47 COG0480 FusA Translation elong 99.8 1.5E-19 3.2E-24 147.8 12.9 99 3-109 48-147 (697)
48 KOG0084|consensus 99.8 1E-19 2.2E-24 126.0 9.5 129 5-149 31-162 (205)
49 cd00881 GTP_translation_factor 99.8 9.8E-19 2.1E-23 122.6 14.1 135 5-151 37-179 (189)
50 cd04168 TetM_like Tet(M)-like 99.8 2.3E-18 5.1E-23 125.7 14.7 104 5-117 39-142 (237)
51 PRK05306 infB translation init 99.8 1.4E-18 3.1E-23 143.9 13.8 123 12-151 319-444 (787)
52 TIGR00487 IF-2 translation ini 99.8 2.3E-18 4.9E-23 139.5 14.0 124 11-151 115-242 (587)
53 PRK00007 elongation factor G; 99.8 1.8E-18 3.9E-23 143.0 13.6 124 3-144 48-171 (693)
54 cd04169 RF3 RF3 subfamily. Pe 99.8 1E-17 2.2E-22 124.3 15.1 94 4-105 45-138 (267)
55 cd04167 Snu114p Snu114p subfam 99.8 1.5E-17 3.2E-22 119.7 15.2 136 5-148 41-192 (213)
56 PRK12739 elongation factor G; 99.8 2.9E-18 6.3E-23 141.8 12.7 125 3-145 46-170 (691)
57 KOG0092|consensus 99.8 1.4E-19 3E-24 124.9 4.1 124 11-150 35-158 (200)
58 cd04120 Rab12 Rab12 subfamily. 99.8 1.2E-18 2.6E-23 124.5 9.0 128 9-151 26-155 (202)
59 TIGR00484 EF-G translation elo 99.8 6.1E-18 1.3E-22 139.9 14.1 125 3-145 48-172 (689)
60 KOG1145|consensus 99.8 2.7E-18 5.8E-23 134.5 10.9 121 13-150 183-307 (683)
61 KOG0098|consensus 99.8 6.1E-19 1.3E-23 121.2 5.4 120 15-150 40-159 (216)
62 COG5257 GCD11 Translation init 99.8 3.3E-18 7.2E-23 126.7 9.6 133 5-150 35-193 (415)
63 PF02421 FeoB_N: Ferrous iron 99.8 1.3E-18 2.7E-23 118.9 6.5 116 13-151 30-153 (156)
64 CHL00189 infB translation init 99.8 7.2E-18 1.6E-22 138.8 12.1 125 11-152 272-403 (742)
65 COG4108 PrfC Peptide chain rel 99.8 9.2E-18 2E-22 128.6 11.6 106 5-119 56-161 (528)
66 KOG0078|consensus 99.8 5.1E-18 1.1E-22 118.9 8.7 119 16-150 45-165 (207)
67 PTZ00099 rab6; Provisional 99.7 9.2E-18 2E-22 117.5 9.2 128 8-151 5-134 (176)
68 PRK00741 prfC peptide chain re 99.7 6.1E-17 1.3E-21 129.9 14.7 94 5-106 54-147 (526)
69 PRK07560 elongation factor EF- 99.7 4.1E-17 8.9E-22 135.6 14.2 136 4-148 57-211 (731)
70 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 5.2E-17 1.1E-21 112.0 12.0 126 12-151 29-158 (168)
71 PLN00116 translation elongatio 99.7 3.9E-17 8.5E-22 137.4 12.7 92 4-103 56-163 (843)
72 cd04160 Arfrp1 Arfrp1 subfamil 99.7 2.3E-17 4.9E-22 113.8 9.2 122 15-150 35-160 (167)
73 TIGR03594 GTPase_EngA ribosome 99.7 5.4E-17 1.2E-21 127.7 12.1 125 11-151 201-336 (429)
74 TIGR00503 prfC peptide chain r 99.7 1.2E-16 2.5E-21 128.3 13.4 94 4-105 54-147 (527)
75 PTZ00416 elongation factor 2; 99.7 1.1E-16 2.4E-21 134.6 13.7 92 4-103 56-157 (836)
76 PRK14845 translation initiatio 99.7 1.3E-16 2.8E-21 135.1 13.6 134 9-151 487-665 (1049)
77 TIGR00491 aIF-2 translation in 99.7 1.2E-16 2.5E-21 129.5 12.7 112 31-151 70-208 (590)
78 COG1160 Predicted GTPases [Gen 99.7 1.6E-16 3.5E-21 122.7 12.8 124 13-151 209-343 (444)
79 KOG0094|consensus 99.7 3.9E-17 8.5E-22 113.1 8.3 118 18-150 59-176 (221)
80 cd01879 FeoB Ferrous iron tran 99.7 1.2E-16 2.6E-21 109.1 10.6 117 12-151 25-149 (158)
81 cd01864 Rab19 Rab19 subfamily. 99.7 4.9E-17 1.1E-21 112.2 8.7 125 12-151 32-158 (165)
82 cd04170 EF-G_bact Elongation f 99.7 3.8E-16 8.3E-21 116.0 14.0 93 5-105 39-131 (268)
83 cd04121 Rab40 Rab40 subfamily. 99.7 6.6E-17 1.4E-21 114.4 8.8 122 13-151 36-159 (189)
84 COG1159 Era GTPase [General fu 99.7 2.1E-16 4.6E-21 116.3 11.1 122 10-151 34-164 (298)
85 cd04122 Rab14 Rab14 subfamily. 99.7 4.9E-17 1.1E-21 112.3 7.3 106 29-150 50-155 (166)
86 PRK00093 GTP-binding protein D 99.7 6E-16 1.3E-20 122.1 13.8 124 11-151 202-336 (435)
87 PRK12740 elongation factor G; 99.7 5.9E-16 1.3E-20 127.9 13.8 94 4-105 34-127 (668)
88 cd04150 Arf1_5_like Arf1-Arf5- 99.7 2.6E-16 5.7E-21 108.2 9.9 113 23-151 37-153 (159)
89 smart00176 RAN Ran (Ras-relate 99.7 1.2E-16 2.7E-21 113.9 8.5 119 13-150 25-145 (200)
90 PRK04004 translation initiatio 99.7 2.9E-16 6.3E-21 127.4 11.6 111 32-151 73-210 (586)
91 cd01894 EngA1 EngA1 subfamily. 99.7 9E-16 2E-20 104.4 12.0 118 11-152 26-151 (157)
92 PLN00223 ADP-ribosylation fact 99.7 6.7E-16 1.5E-20 108.5 11.4 113 20-150 51-169 (181)
93 COG1160 Predicted GTPases [Gen 99.7 2.9E-16 6.2E-21 121.4 10.2 116 13-152 34-158 (444)
94 cd04157 Arl6 Arl6 subfamily. 99.7 5.1E-16 1.1E-20 106.4 10.5 117 22-151 37-156 (162)
95 cd04158 ARD1 ARD1 subfamily. 99.7 2.5E-16 5.3E-21 109.3 8.8 122 17-150 30-152 (169)
96 cd04149 Arf6 Arf6 subfamily. 99.7 2.8E-16 6.1E-21 109.1 9.0 111 24-150 47-161 (168)
97 cd04154 Arl2 Arl2 subfamily. 99.7 4.2E-16 9.1E-21 108.5 9.9 118 21-151 49-167 (173)
98 KOG0086|consensus 99.7 4.5E-17 9.7E-22 108.9 4.6 121 13-149 41-161 (214)
99 TIGR00436 era GTP-binding prot 99.7 1.3E-15 2.8E-20 113.4 13.0 120 11-151 29-156 (270)
100 cd04126 Rab20 Rab20 subfamily. 99.7 3.3E-16 7.3E-21 113.2 9.5 125 23-151 37-182 (220)
101 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 4E-16 8.7E-21 107.6 9.5 123 13-151 32-156 (166)
102 KOG0394|consensus 99.7 7.9E-17 1.7E-21 110.6 5.7 123 15-150 41-169 (210)
103 cd04128 Spg1 Spg1p. Spg1p (se 99.7 3.8E-16 8.3E-21 109.8 9.4 130 11-152 28-159 (182)
104 KOG0465|consensus 99.7 1.7E-16 3.6E-21 125.7 8.2 106 4-118 78-183 (721)
105 cd04151 Arl1 Arl1 subfamily. 99.7 7.8E-16 1.7E-20 105.5 10.6 115 22-152 35-153 (158)
106 KOG0095|consensus 99.7 1.9E-16 4.2E-21 105.5 6.8 121 15-151 41-161 (213)
107 PRK03003 GTP-binding protein D 99.7 9.9E-16 2.1E-20 122.0 12.0 124 11-151 240-374 (472)
108 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 4.5E-16 9.9E-21 110.9 9.2 124 13-151 30-160 (201)
109 cd04124 RabL2 RabL2 subfamily. 99.7 1.1E-15 2.4E-20 105.2 10.7 102 28-151 47-150 (161)
110 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 4E-16 8.7E-21 108.5 8.6 129 10-151 27-157 (170)
111 TIGR03598 GTPase_YsxC ribosome 99.7 3.7E-15 8E-20 104.4 13.5 117 13-148 50-179 (179)
112 cd01865 Rab3 Rab3 subfamily. 99.7 4.9E-16 1.1E-20 107.3 8.8 108 29-152 49-156 (165)
113 cd04127 Rab27A Rab27a subfamil 99.7 6.9E-16 1.5E-20 107.8 9.4 106 30-151 63-169 (180)
114 KOG0083|consensus 99.7 1.2E-16 2.6E-21 104.7 4.7 106 28-149 45-150 (192)
115 cd01861 Rab6 Rab6 subfamily. 99.7 9.7E-16 2.1E-20 105.0 9.5 126 11-152 28-155 (161)
116 PRK15494 era GTPase Era; Provi 99.7 1.7E-15 3.7E-20 116.0 11.7 119 12-151 82-208 (339)
117 PRK13351 elongation factor G; 99.7 2.6E-15 5.6E-20 124.4 13.3 95 4-106 47-141 (687)
118 smart00177 ARF ARF-like small 99.6 1E-15 2.2E-20 106.9 9.3 112 23-150 50-165 (175)
119 cd01867 Rab8_Rab10_Rab13_like 99.6 1E-15 2.2E-20 105.9 9.1 123 13-151 33-157 (167)
120 KOG0464|consensus 99.6 5.4E-17 1.2E-21 124.2 2.8 106 5-119 77-182 (753)
121 cd04112 Rab26 Rab26 subfamily. 99.6 7.1E-16 1.5E-20 109.1 8.4 107 29-151 49-155 (191)
122 cd04116 Rab9 Rab9 subfamily. 99.6 1.1E-15 2.3E-20 105.9 9.1 121 15-151 37-163 (170)
123 cd01866 Rab2 Rab2 subfamily. 99.6 1E-15 2.2E-20 106.0 9.0 106 29-150 52-157 (168)
124 KOG0087|consensus 99.6 2E-16 4.3E-21 110.8 5.3 130 5-150 36-167 (222)
125 cd04109 Rab28 Rab28 subfamily. 99.6 1.5E-15 3.2E-20 109.4 10.1 127 9-151 26-158 (215)
126 TIGR00490 aEF-2 translation el 99.6 1.6E-15 3.6E-20 125.9 11.3 94 4-105 56-153 (720)
127 cd01868 Rab11_like Rab11-like. 99.6 9E-16 2E-20 105.7 8.2 124 12-151 32-157 (165)
128 KOG0093|consensus 99.6 1.7E-16 3.7E-21 105.4 4.3 108 28-151 68-175 (193)
129 KOG0461|consensus 99.6 1.3E-15 2.8E-20 114.2 9.4 136 6-151 37-185 (522)
130 KOG0080|consensus 99.6 2E-16 4.4E-21 106.5 4.5 120 15-150 45-165 (209)
131 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 6.8E-16 1.5E-20 106.7 7.3 114 22-150 36-157 (164)
132 cd01860 Rab5_related Rab5-rela 99.6 1.1E-15 2.4E-20 104.9 8.2 121 15-151 35-155 (163)
133 TIGR00437 feoB ferrous iron tr 99.6 1.1E-15 2.3E-20 124.4 9.4 119 11-152 22-148 (591)
134 cd01875 RhoG RhoG subfamily. 99.6 1.3E-15 2.8E-20 107.9 8.7 111 30-150 51-168 (191)
135 PLN03071 GTP-binding nuclear p 99.6 9.3E-16 2E-20 110.9 8.0 120 12-150 42-163 (219)
136 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 4E-15 8.6E-20 103.8 10.8 119 17-151 46-168 (174)
137 cd04106 Rab23_lke Rab23-like s 99.6 1.8E-15 3.9E-20 103.8 8.9 122 13-151 30-155 (162)
138 cd01874 Cdc42 Cdc42 subfamily. 99.6 1.3E-15 2.8E-20 106.5 8.2 117 25-151 42-167 (175)
139 cd04117 Rab15 Rab15 subfamily. 99.6 2.6E-15 5.6E-20 103.4 9.6 123 13-151 30-154 (161)
140 smart00175 RAB Rab subfamily o 99.6 2.2E-15 4.8E-20 103.3 9.2 124 12-151 29-154 (164)
141 PRK03003 GTP-binding protein D 99.6 4E-15 8.7E-20 118.5 11.9 117 11-151 67-191 (472)
142 cd01895 EngA2 EngA2 subfamily. 99.6 8.8E-15 1.9E-19 100.8 12.2 125 12-151 32-167 (174)
143 cd04138 H_N_K_Ras_like H-Ras/N 99.6 4.9E-15 1.1E-19 101.3 10.6 110 25-151 42-154 (162)
144 cd04133 Rop_like Rop subfamily 99.6 8.4E-16 1.8E-20 107.6 6.8 113 29-151 48-165 (176)
145 PTZ00133 ADP-ribosylation fact 99.6 2.5E-15 5.5E-20 105.6 9.2 114 22-151 53-170 (182)
146 cd01871 Rac1_like Rac1-like su 99.6 2.1E-15 4.6E-20 105.3 8.7 113 30-152 49-168 (174)
147 cd04145 M_R_Ras_like M-Ras/R-R 99.6 3.7E-15 7.9E-20 102.3 9.8 112 24-151 42-156 (164)
148 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 1.9E-15 4.2E-20 105.3 8.5 110 25-150 43-155 (172)
149 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 3.3E-15 7.2E-20 105.0 9.7 112 28-151 50-162 (183)
150 cd04119 RJL RJL (RabJ-Like) su 99.6 2.3E-15 5.1E-20 103.4 8.8 124 12-151 29-159 (168)
151 cd04175 Rap1 Rap1 subgroup. T 99.6 2.1E-15 4.6E-20 103.8 8.4 112 24-151 41-155 (164)
152 COG2229 Predicted GTPase [Gene 99.6 8.5E-15 1.8E-19 100.8 11.1 117 13-149 50-168 (187)
153 TIGR03594 GTPase_EngA ribosome 99.6 5.9E-15 1.3E-19 116.2 11.9 116 12-151 29-152 (429)
154 cd01863 Rab18 Rab18 subfamily. 99.6 2.4E-15 5.3E-20 103.1 8.5 122 13-151 32-154 (161)
155 cd04144 Ras2 Ras2 subfamily. 99.6 4.7E-15 1E-19 104.8 9.9 106 30-151 47-155 (190)
156 cd00878 Arf_Arl Arf (ADP-ribos 99.6 2.9E-15 6.3E-20 102.5 8.5 117 18-150 31-151 (158)
157 cd04140 ARHI_like ARHI subfami 99.6 4E-15 8.7E-20 102.7 9.3 108 28-151 47-157 (165)
158 cd04161 Arl2l1_Arl13_like Arl2 99.6 4.1E-15 8.9E-20 103.1 9.2 117 18-149 31-159 (167)
159 cd04176 Rap2 Rap2 subgroup. T 99.6 3.2E-15 6.9E-20 102.8 8.5 106 30-151 49-155 (163)
160 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 2.2E-15 4.7E-20 106.0 7.7 113 29-151 52-172 (182)
161 cd04142 RRP22 RRP22 subfamily. 99.6 3.4E-15 7.3E-20 106.4 8.6 127 10-151 27-166 (198)
162 cd04113 Rab4 Rab4 subfamily. 99.6 2.7E-15 5.8E-20 102.9 7.8 122 14-151 31-154 (161)
163 cd04156 ARLTS1 ARLTS1 subfamil 99.6 8.5E-15 1.9E-19 100.3 10.3 110 28-152 42-155 (160)
164 cd00877 Ran Ran (Ras-related n 99.6 2.1E-15 4.6E-20 104.4 7.3 104 29-151 48-151 (166)
165 cd04136 Rap_like Rap-like subf 99.6 3.4E-15 7.4E-20 102.4 8.3 111 25-151 42-155 (163)
166 PRK09554 feoB ferrous iron tra 99.6 5.5E-15 1.2E-19 123.1 10.6 117 13-152 33-161 (772)
167 PLN03110 Rab GTPase; Provision 99.6 5.9E-15 1.3E-19 106.5 9.4 124 12-151 41-166 (216)
168 cd04114 Rab30 Rab30 subfamily. 99.6 7.5E-15 1.6E-19 101.4 9.5 120 16-151 40-161 (169)
169 PTZ00369 Ras-like protein; Pro 99.6 4.7E-15 1E-19 104.7 8.6 106 29-150 52-158 (189)
170 KOG0081|consensus 99.6 4.4E-15 9.5E-20 100.0 7.7 105 30-149 67-171 (219)
171 KOG0467|consensus 99.6 1.4E-14 3E-19 117.2 11.9 91 4-102 46-136 (887)
172 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 4.7E-15 1E-19 107.9 8.4 113 29-151 60-180 (232)
173 cd04110 Rab35 Rab35 subfamily. 99.6 9.1E-15 2E-19 104.1 9.7 121 14-151 37-159 (199)
174 PRK00093 GTP-binding protein D 99.6 1.7E-14 3.7E-19 113.8 12.2 115 13-151 32-154 (435)
175 KOG0088|consensus 99.6 4.5E-16 9.7E-21 104.7 2.3 108 28-151 60-167 (218)
176 cd01897 NOG NOG1 is a nucleola 99.6 2.8E-14 6.1E-19 98.4 11.3 121 13-152 30-161 (168)
177 smart00173 RAS Ras subfamily o 99.6 9.7E-15 2.1E-19 100.4 8.9 106 30-151 48-154 (164)
178 PRK09518 bifunctional cytidyla 99.6 2.2E-14 4.7E-19 119.2 12.6 117 11-151 304-428 (712)
179 cd04101 RabL4 RabL4 (Rab-like4 99.6 1.6E-14 3.5E-19 99.2 10.0 107 28-151 50-156 (164)
180 cd04125 RabA_like RabA-like su 99.6 8.4E-15 1.8E-19 103.2 8.6 107 29-151 48-154 (188)
181 cd00879 Sar1 Sar1 subfamily. 99.6 1.1E-14 2.5E-19 102.6 9.0 120 17-151 50-183 (190)
182 cd00154 Rab Rab family. Rab G 99.6 8.8E-15 1.9E-19 99.2 8.1 121 15-151 32-154 (159)
183 PRK09518 bifunctional cytidyla 99.6 2E-14 4.3E-19 119.5 11.7 124 12-152 480-614 (712)
184 cd04131 Rnd Rnd subfamily. Th 99.6 6.1E-15 1.3E-19 103.4 7.4 112 29-150 48-167 (178)
185 smart00178 SAR Sar1p-like memb 99.6 1.5E-14 3.3E-19 101.8 8.8 122 17-150 48-176 (184)
186 smart00174 RHO Rho (Ras homolo 99.6 1.1E-14 2.4E-19 101.1 7.6 112 30-151 46-164 (174)
187 cd01898 Obg Obg subfamily. Th 99.6 4.5E-14 9.7E-19 97.5 10.6 122 14-151 31-163 (170)
188 cd04139 RalA_RalB RalA/RalB su 99.6 2E-14 4.4E-19 98.5 8.7 108 29-152 47-155 (164)
189 PF00025 Arf: ADP-ribosylation 99.6 4.9E-14 1.1E-18 98.5 10.6 118 17-149 45-166 (175)
190 cd04115 Rab33B_Rab33A Rab33B/R 99.6 3.2E-14 6.8E-19 98.7 9.4 126 9-150 28-160 (170)
191 cd04147 Ras_dva Ras-dva subfam 99.6 3.3E-14 7.2E-19 101.1 9.7 116 22-151 37-155 (198)
192 PRK00089 era GTPase Era; Revie 99.6 1.3E-13 2.7E-18 103.7 13.3 120 13-151 36-163 (292)
193 cd04111 Rab39 Rab39 subfamily. 99.6 2.9E-14 6.3E-19 102.5 9.4 122 14-151 33-158 (211)
194 cd01873 RhoBTB RhoBTB subfamil 99.6 1.4E-14 3.1E-19 102.9 7.6 110 29-151 65-188 (195)
195 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 1.8E-14 4E-19 104.2 8.2 132 8-150 26-167 (222)
196 cd04143 Rhes_like Rhes_like su 99.6 2E-14 4.3E-19 105.7 8.4 114 23-151 39-163 (247)
197 PLN03118 Rab family protein; P 99.6 1.9E-14 4.2E-19 103.3 8.1 121 15-151 45-169 (211)
198 cd04118 Rab24 Rab24 subfamily. 99.5 2E-14 4.3E-19 101.6 7.8 115 24-151 42-158 (193)
199 PRK12299 obgE GTPase CgtA; Rev 99.5 7.3E-14 1.6E-18 106.7 11.3 122 14-151 189-320 (335)
200 KOG0079|consensus 99.5 8.3E-15 1.8E-19 97.5 5.1 119 15-150 42-160 (198)
201 cd01862 Rab7 Rab7 subfamily. 99.5 4.4E-14 9.5E-19 97.7 8.8 118 19-151 36-159 (172)
202 TIGR02729 Obg_CgtA Obg family 99.5 6.5E-14 1.4E-18 106.8 10.3 124 14-151 188-321 (329)
203 cd04134 Rho3 Rho3 subfamily. 99.5 2.9E-14 6.2E-19 100.7 7.6 112 30-151 48-166 (189)
204 cd01893 Miro1 Miro1 subfamily. 99.5 4.4E-14 9.6E-19 97.6 8.3 111 28-151 45-156 (166)
205 KOG1144|consensus 99.5 4.2E-14 9.1E-19 114.4 9.2 111 31-150 541-678 (1064)
206 cd04130 Wrch_1 Wrch-1 subfamil 99.5 3E-14 6.5E-19 99.1 7.4 118 24-151 40-166 (173)
207 cd04123 Rab21 Rab21 subfamily. 99.5 4.9E-14 1.1E-18 96.3 8.3 118 18-151 35-154 (162)
208 cd04132 Rho4_like Rho4-like su 99.5 3.8E-14 8.3E-19 99.6 7.9 110 30-151 49-159 (187)
209 COG5258 GTPBP1 GTPase [General 99.5 3.1E-13 6.7E-18 102.7 13.0 135 4-150 152-330 (527)
210 cd04177 RSR1 RSR1 subgroup. R 99.5 4E-14 8.8E-19 97.9 7.6 107 30-151 49-156 (168)
211 PRK05291 trmE tRNA modificatio 99.5 7.3E-14 1.6E-18 110.6 9.8 112 11-152 244-363 (449)
212 cd04135 Tc10 TC10 subfamily. 99.5 2.8E-14 6.2E-19 99.0 6.5 118 24-151 40-166 (174)
213 cd04159 Arl10_like Arl10-like 99.5 2.2E-13 4.8E-18 92.4 10.7 113 23-151 37-153 (159)
214 COG0218 Predicted GTPase [Gene 99.5 1.8E-13 3.8E-18 96.0 10.3 134 1-152 44-190 (200)
215 KOG0468|consensus 99.5 8E-14 1.7E-18 111.7 9.6 93 3-103 165-262 (971)
216 COG0370 FeoB Fe2+ transport sy 99.5 7.1E-14 1.5E-18 112.6 9.4 116 14-152 34-157 (653)
217 PLN03108 Rab family protein; P 99.5 4.6E-14 9.9E-19 101.4 7.5 117 18-150 41-159 (210)
218 PRK04213 GTP-binding protein; 99.5 1.2E-13 2.7E-18 98.2 9.7 128 9-151 35-184 (201)
219 KOG0097|consensus 99.5 1.8E-14 3.8E-19 95.4 4.9 124 10-149 38-163 (215)
220 cd04146 RERG_RasL11_like RERG/ 99.5 5.3E-14 1.2E-18 97.0 7.4 107 29-151 46-156 (165)
221 KOG0073|consensus 99.5 4E-13 8.7E-18 90.8 11.2 118 17-148 47-167 (185)
222 TIGR03156 GTP_HflX GTP-binding 99.5 5.8E-14 1.3E-18 107.9 8.1 119 12-152 218-345 (351)
223 PRK12296 obgE GTPase CgtA; Rev 99.5 4.3E-13 9.2E-18 106.6 13.1 125 13-151 189-332 (500)
224 KOG0075|consensus 99.5 2.3E-13 5E-18 90.5 9.7 118 15-150 50-173 (186)
225 COG0486 ThdF Predicted GTPase 99.5 1E-13 2.2E-18 107.6 9.2 114 13-152 248-369 (454)
226 cd04164 trmE TrmE (MnmE, ThdF, 99.5 2.9E-13 6.3E-18 91.9 10.3 110 13-151 32-149 (157)
227 cd01881 Obg_like The Obg-like 99.5 1.4E-13 3.1E-18 95.4 8.7 127 13-152 26-170 (176)
228 KOG0091|consensus 99.5 7.4E-14 1.6E-18 94.5 6.6 106 30-150 58-164 (213)
229 KOG0070|consensus 99.5 1.1E-13 2.3E-18 95.4 7.1 117 17-149 48-168 (181)
230 PRK15467 ethanolamine utilizat 99.5 2E-13 4.4E-18 93.9 8.3 95 34-151 41-139 (158)
231 PRK09866 hypothetical protein; 99.5 5.2E-13 1.1E-17 107.7 11.7 111 29-152 229-346 (741)
232 cd04103 Centaurin_gamma Centau 99.5 1.3E-13 2.8E-18 94.9 6.9 110 24-151 39-151 (158)
233 PRK12298 obgE GTPase CgtA; Rev 99.5 8.8E-13 1.9E-17 102.6 12.1 125 12-151 188-325 (390)
234 cd01892 Miro2 Miro2 subfamily. 99.5 3.4E-13 7.3E-18 93.7 8.8 110 24-151 46-158 (169)
235 TIGR00450 mnmE_trmE_thdF tRNA 99.5 9.1E-13 2E-17 104.1 12.0 109 13-149 234-350 (442)
236 PRK12297 obgE GTPase CgtA; Rev 99.5 1.4E-12 2.9E-17 102.3 12.5 119 13-151 188-319 (424)
237 KOG0076|consensus 99.5 9.4E-14 2E-18 94.7 5.2 122 16-149 55-177 (197)
238 cd00880 Era_like Era (E. coli 99.5 1.6E-12 3.4E-17 87.8 11.4 123 12-151 26-156 (163)
239 cd04155 Arl3 Arl3 subfamily. 99.5 4.2E-13 9.1E-18 93.0 8.6 113 21-151 49-167 (173)
240 cd01870 RhoA_like RhoA-like su 99.5 2.4E-13 5.2E-18 94.4 7.3 118 24-151 41-167 (175)
241 TIGR00231 small_GTP small GTP- 99.5 9.4E-13 2E-17 88.8 10.0 128 8-151 26-156 (161)
242 PRK00454 engB GTP-binding prot 99.5 1.6E-12 3.4E-17 91.9 11.5 118 13-151 56-186 (196)
243 TIGR02528 EutP ethanolamine ut 99.5 3.2E-13 6.9E-18 90.9 7.4 96 33-151 38-137 (142)
244 PRK11058 GTPase HflX; Provisio 99.4 4.4E-13 9.6E-18 105.3 9.1 120 12-152 226-355 (426)
245 cd00876 Ras Ras family. The R 99.4 5.7E-13 1.2E-17 90.8 8.6 117 19-151 34-153 (160)
246 cd01878 HflX HflX subfamily. 99.4 4.6E-13 1E-17 95.5 8.5 117 14-151 72-197 (204)
247 PF00071 Ras: Ras family; Int 99.4 2.7E-13 5.8E-18 93.0 6.8 124 11-150 27-152 (162)
248 cd00157 Rho Rho (Ras homology) 99.4 3.4E-13 7.4E-18 93.1 7.2 112 29-151 47-165 (171)
249 cd04148 RGK RGK subfamily. Th 99.4 5.8E-13 1.3E-17 96.4 8.5 109 25-151 45-155 (221)
250 cd04163 Era Era subfamily. Er 99.4 8.3E-12 1.8E-16 85.1 13.4 117 16-151 37-161 (168)
251 KOG0469|consensus 99.4 3E-12 6.4E-17 100.4 9.2 94 2-103 54-163 (842)
252 cd04137 RheB Rheb (Ras Homolog 99.4 5E-12 1.1E-16 88.2 9.6 106 30-151 49-155 (180)
253 KOG0071|consensus 99.3 2.1E-11 4.6E-16 80.7 9.9 116 17-148 48-167 (180)
254 KOG0466|consensus 99.3 4.9E-12 1.1E-16 93.8 6.9 108 30-150 125-232 (466)
255 cd00882 Ras_like_GTPase Ras-li 99.3 2.4E-11 5.1E-16 81.0 9.4 104 29-151 44-152 (157)
256 cd04105 SR_beta Signal recogni 99.3 6.3E-11 1.4E-15 84.7 11.9 87 28-120 46-139 (203)
257 KOG0090|consensus 99.3 6.6E-11 1.4E-15 83.6 11.4 102 16-122 68-177 (238)
258 KOG0072|consensus 99.3 1.6E-11 3.6E-16 81.5 7.9 118 20-150 52-170 (182)
259 PTZ00132 GTP-binding nuclear p 99.3 2.4E-11 5.3E-16 87.4 9.4 104 28-150 56-159 (215)
260 KOG0052|consensus 99.3 1.6E-12 3.5E-17 98.9 3.4 124 5-128 57-180 (391)
261 cd01896 DRG The developmentall 99.3 4.3E-11 9.2E-16 87.4 10.4 53 14-66 31-90 (233)
262 KOG1143|consensus 99.3 2.2E-11 4.7E-16 92.6 9.0 111 29-151 248-380 (591)
263 cd04129 Rho2 Rho2 subfamily. 99.3 1.2E-11 2.6E-16 87.1 7.2 111 30-151 49-165 (187)
264 PF10662 PduV-EutP: Ethanolami 99.3 1.2E-11 2.5E-16 83.1 6.3 97 33-152 39-139 (143)
265 KOG0395|consensus 99.3 2.3E-11 4.9E-16 86.5 8.2 107 28-150 49-156 (196)
266 cd04102 RabL3 RabL3 (Rab-like3 99.3 9.4E-11 2E-15 83.8 10.4 71 29-103 53-142 (202)
267 cd01876 YihA_EngB The YihA (En 99.3 8.3E-11 1.8E-15 80.4 9.8 122 12-152 30-164 (170)
268 cd01882 BMS1 Bms1. Bms1 is an 99.2 3.4E-10 7.4E-15 82.2 13.1 103 27-145 80-182 (225)
269 PLN00023 GTP-binding protein; 99.2 7.7E-11 1.7E-15 89.1 9.0 96 30-129 83-190 (334)
270 PRK13768 GTPase; Provisional 99.2 1.6E-10 3.4E-15 85.4 8.3 111 29-151 96-239 (253)
271 PF09439 SRPRB: Signal recogni 99.1 1.8E-10 3.9E-15 80.5 7.0 86 28-121 47-143 (181)
272 KOG1423|consensus 99.1 4E-10 8.6E-15 83.7 9.0 135 7-152 97-264 (379)
273 KOG0393|consensus 99.1 2.4E-10 5.3E-15 80.5 6.7 134 5-152 26-172 (198)
274 COG2262 HflX GTPases [General 99.1 5.6E-10 1.2E-14 85.8 9.0 119 10-152 219-349 (411)
275 COG1100 GTPase SAR1 and relate 99.1 6.2E-10 1.3E-14 80.0 8.5 95 8-105 30-126 (219)
276 KOG0463|consensus 99.1 3.8E-10 8.3E-15 86.1 7.5 111 30-152 219-351 (641)
277 KOG0074|consensus 99.1 4.5E-10 9.8E-15 74.6 5.7 120 17-149 48-169 (185)
278 COG1084 Predicted GTPase [Gene 99.0 1.4E-09 3.1E-14 81.5 8.6 120 14-151 199-328 (346)
279 cd01859 MJ1464 MJ1464. This f 99.0 2.4E-09 5.1E-14 73.3 8.7 86 44-151 3-88 (156)
280 KOG1489|consensus 99.0 3.5E-09 7.6E-14 79.0 10.0 119 15-151 228-359 (366)
281 COG1163 DRG Predicted GTPase [ 99.0 1.3E-09 2.8E-14 81.6 6.9 53 15-67 95-154 (365)
282 PF04670 Gtr1_RagA: Gtr1/RagA 99.0 1.6E-08 3.5E-13 73.6 12.4 124 13-143 30-161 (232)
283 cd04104 p47_IIGP_like p47 (47- 99.0 7.7E-09 1.7E-13 73.6 9.9 108 30-150 52-175 (197)
284 PF01926 MMR_HSR1: 50S ribosom 99.0 7E-09 1.5E-13 67.5 8.6 79 12-99 29-116 (116)
285 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 1.2E-08 2.7E-13 68.7 10.0 80 45-146 3-84 (141)
286 cd01855 YqeH YqeH. YqeH is an 98.9 5.2E-09 1.1E-13 73.9 8.3 94 42-151 23-117 (190)
287 TIGR00157 ribosome small subun 98.9 1.7E-09 3.6E-14 79.5 5.9 93 41-152 24-116 (245)
288 KOG1191|consensus 98.9 1.3E-09 2.7E-14 85.4 5.2 124 12-151 298-442 (531)
289 cd01856 YlqF YlqF. Proteins o 98.9 8.1E-09 1.8E-13 71.9 7.6 91 37-151 2-93 (171)
290 cd01858 NGP_1 NGP-1. Autoanti 98.9 7.5E-09 1.6E-13 71.0 7.0 83 47-150 2-86 (157)
291 cd01850 CDC_Septin CDC/Septin. 98.8 9.3E-08 2E-12 71.5 12.2 102 13-127 44-176 (276)
292 cd01852 AIG1 AIG1 (avrRpt2-ind 98.8 9.6E-08 2.1E-12 67.8 11.3 85 13-105 32-131 (196)
293 KOG4252|consensus 98.8 2.5E-10 5.5E-15 78.6 -2.0 104 28-148 67-170 (246)
294 TIGR03596 GTPase_YlqF ribosome 98.8 2.6E-08 5.6E-13 74.5 8.4 90 38-151 5-95 (276)
295 PF08477 Miro: Miro-like prote 98.8 6.2E-09 1.3E-13 67.8 4.1 83 15-101 35-119 (119)
296 PRK12289 GTPase RsgA; Reviewed 98.8 3.9E-08 8.4E-13 75.8 8.9 85 47-152 83-168 (352)
297 cd01849 YlqF_related_GTPase Yl 98.8 4.1E-08 8.9E-13 67.2 8.0 77 55-152 1-78 (155)
298 COG0536 Obg Predicted GTPase [ 98.8 9.4E-08 2E-12 72.2 9.7 118 15-151 191-325 (369)
299 cd01899 Ygr210 Ygr210 subfamil 98.7 2.2E-07 4.8E-12 70.7 10.7 36 30-65 69-111 (318)
300 PRK09563 rbgA GTPase YlqF; Rev 98.7 5.7E-08 1.2E-12 73.0 7.4 91 37-151 7-98 (287)
301 TIGR03597 GTPase_YqeH ribosome 98.7 6E-08 1.3E-12 75.1 7.6 96 40-151 50-145 (360)
302 KOG0096|consensus 98.7 6.5E-08 1.4E-12 67.3 6.5 102 29-149 58-159 (216)
303 KOG1673|consensus 98.7 4.7E-08 1E-12 66.1 5.7 127 7-149 44-176 (205)
304 PF03029 ATP_bind_1: Conserved 98.7 4.4E-08 9.6E-13 71.7 6.0 114 31-150 92-228 (238)
305 PRK00098 GTPase RsgA; Reviewed 98.7 8.3E-08 1.8E-12 72.5 7.1 82 51-152 78-160 (298)
306 PRK09435 membrane ATPase/prote 98.6 1.8E-07 4E-12 71.4 8.6 105 28-151 147-252 (332)
307 cd00066 G-alpha G protein alph 98.6 1.7E-07 3.7E-12 71.4 7.3 87 14-102 145-240 (317)
308 smart00275 G_alpha G protein a 98.6 4.1E-07 8.9E-12 70.0 9.2 89 13-103 167-264 (342)
309 cd01854 YjeQ_engC YjeQ/EngC. 98.6 2.3E-07 4.9E-12 69.8 7.1 82 51-152 76-157 (287)
310 TIGR00750 lao LAO/AO transport 98.6 5E-07 1.1E-11 68.3 8.8 105 28-151 125-230 (300)
311 COG3596 Predicted GTPase [Gene 98.5 1.1E-06 2.3E-11 64.9 9.7 111 26-150 83-213 (296)
312 KOG2486|consensus 98.5 2.8E-07 6.1E-12 67.9 6.4 125 13-151 169-308 (320)
313 KOG0077|consensus 98.5 6.5E-07 1.4E-11 61.2 7.2 86 17-106 51-137 (193)
314 PRK12288 GTPase RsgA; Reviewed 98.5 1E-06 2.2E-11 67.9 8.6 83 51-151 118-200 (347)
315 smart00053 DYNc Dynamin, GTPas 98.4 2.7E-06 5.8E-11 62.4 9.4 82 15-104 109-206 (240)
316 KOG1532|consensus 98.4 6.9E-07 1.5E-11 65.9 6.1 119 29-150 115-255 (366)
317 PRK01889 GTPase RsgA; Reviewed 98.4 1.7E-06 3.6E-11 67.0 7.6 80 51-151 110-189 (356)
318 KOG1490|consensus 98.4 1E-06 2.3E-11 69.6 6.4 109 30-152 215-334 (620)
319 PRK13796 GTPase YqeH; Provisio 98.4 2.8E-06 6.1E-11 66.0 8.7 89 47-151 62-151 (365)
320 KOG4423|consensus 98.3 2.7E-07 5.9E-12 64.2 1.7 107 30-150 75-185 (229)
321 PF00350 Dynamin_N: Dynamin fa 98.3 2E-06 4.3E-11 59.2 5.9 66 28-100 99-168 (168)
322 COG4917 EutP Ethanolamine util 98.3 1.9E-06 4E-11 56.4 4.6 94 34-151 41-138 (148)
323 TIGR02836 spore_IV_A stage IV 98.2 1.6E-05 3.6E-10 62.2 9.2 83 16-101 69-191 (492)
324 KOG0082|consensus 98.2 1.1E-05 2.5E-10 61.8 7.9 89 13-103 178-275 (354)
325 cd01853 Toc34_like Toc34-like 98.1 0.00074 1.6E-08 49.9 16.2 85 15-105 64-164 (249)
326 KOG3886|consensus 98.1 6.4E-06 1.4E-10 59.5 5.0 124 10-143 32-163 (295)
327 TIGR00073 hypB hydrogenase acc 98.1 9.9E-06 2.1E-10 58.0 5.7 98 29-151 102-199 (207)
328 COG1162 Predicted GTPases [Gen 98.0 2.9E-05 6.3E-10 58.3 7.7 86 49-152 75-160 (301)
329 KOG1954|consensus 98.0 9.7E-05 2.1E-09 56.9 10.0 67 30-103 147-224 (532)
330 TIGR00101 ureG urease accessor 98.0 2.6E-05 5.5E-10 55.7 6.5 96 29-151 91-188 (199)
331 PF00503 G-alpha: G-protein al 97.9 3.9E-05 8.5E-10 60.1 7.0 87 14-102 219-315 (389)
332 cd03110 Fer4_NifH_child This p 97.9 0.00021 4.5E-09 49.8 9.1 66 28-103 91-156 (179)
333 TIGR00064 ftsY signal recognit 97.8 0.00064 1.4E-08 50.9 10.9 96 28-152 153-261 (272)
334 KOG3883|consensus 97.7 0.00015 3.3E-09 49.2 6.2 70 30-103 60-131 (198)
335 KOG1707|consensus 97.7 5.4E-05 1.2E-09 61.1 4.7 116 22-150 48-166 (625)
336 cd04178 Nucleostemin_like Nucl 97.7 0.00022 4.7E-09 49.8 6.7 41 55-103 1-43 (172)
337 COG1703 ArgK Putative periplas 97.6 0.00017 3.6E-09 54.1 6.1 101 28-150 142-245 (323)
338 PRK10416 signal recognition pa 97.6 0.0012 2.7E-08 50.4 10.8 96 28-152 195-303 (318)
339 PF03308 ArgK: ArgK protein; 97.6 0.00024 5.2E-09 52.4 6.3 101 28-151 120-222 (266)
340 PF04548 AIG1: AIG1 family; I 97.6 0.0014 3.1E-08 47.1 10.1 84 13-104 32-130 (212)
341 PF06858 NOG1: Nucleolar GTP-b 97.5 0.00048 1E-08 38.9 5.6 51 46-101 5-58 (58)
342 PRK14974 cell division protein 97.5 0.0016 3.5E-08 50.1 10.1 96 28-152 221-323 (336)
343 PF05049 IIGP: Interferon-indu 97.5 0.00075 1.6E-08 52.5 7.9 109 24-145 79-202 (376)
344 KOG0099|consensus 97.5 0.00074 1.6E-08 50.0 7.3 90 13-103 185-282 (379)
345 TIGR00991 3a0901s02IAP34 GTP-b 97.4 0.012 2.7E-07 44.7 13.1 80 18-103 74-166 (313)
346 COG3640 CooC CO dehydrogenase 97.3 0.00056 1.2E-08 49.7 4.9 65 28-102 132-197 (255)
347 KOG0410|consensus 97.3 0.0004 8.8E-09 52.7 4.3 107 17-151 212-333 (410)
348 COG0378 HypB Ni2+-binding GTPa 97.2 0.00059 1.3E-08 48.2 4.6 91 30-150 97-192 (202)
349 KOG0447|consensus 97.2 0.0012 2.5E-08 53.6 6.2 86 13-105 392-494 (980)
350 KOG1486|consensus 97.2 0.0024 5.2E-08 47.1 7.2 52 15-66 94-152 (364)
351 KOG0448|consensus 97.1 0.0029 6.2E-08 52.3 8.0 99 31-143 207-310 (749)
352 KOG1547|consensus 97.1 0.018 4E-07 42.3 10.8 100 17-128 89-218 (336)
353 PRK10463 hydrogenase nickel in 97.0 0.00061 1.3E-08 51.3 3.3 49 93-151 233-281 (290)
354 cd02038 FleN-like FleN is a me 97.0 0.0092 2E-07 40.0 8.7 64 30-102 45-109 (139)
355 PF00735 Septin: Septin; Inte 97.0 0.019 4.2E-07 43.2 10.9 103 13-128 44-176 (281)
356 COG5019 CDC3 Septin family pro 97.0 0.028 6E-07 43.5 11.7 103 13-127 63-195 (373)
357 KOG1424|consensus 96.9 0.0075 1.6E-07 48.5 8.6 78 46-143 167-244 (562)
358 COG1161 Predicted GTPases [Gen 96.9 0.0049 1.1E-07 47.3 7.5 96 33-151 13-109 (322)
359 TIGR01425 SRP54_euk signal rec 96.9 0.0045 9.8E-08 49.1 7.4 66 28-103 181-252 (429)
360 KOG2484|consensus 96.9 0.011 2.3E-07 46.2 9.1 55 43-104 136-191 (435)
361 PTZ00258 GTP-binding protein; 96.9 0.0032 7E-08 49.4 6.2 52 13-64 51-126 (390)
362 cd02036 MinD Bacterial cell di 96.8 0.016 3.6E-07 39.9 8.7 63 31-102 64-126 (179)
363 KOG3887|consensus 96.8 0.023 4.9E-07 41.9 9.5 105 30-142 75-186 (347)
364 cd01900 YchF YchF subfamily. 96.8 0.0047 1E-07 46.3 6.0 52 13-64 28-103 (274)
365 cd03115 SRP The signal recogni 96.7 0.013 2.8E-07 40.5 7.7 66 28-104 81-153 (173)
366 cd03114 ArgK-like The function 96.7 0.0071 1.5E-07 41.1 6.0 59 28-101 90-148 (148)
367 cd02037 MRP-like MRP (Multiple 96.7 0.0079 1.7E-07 41.5 6.2 66 28-102 66-133 (169)
368 KOG3905|consensus 96.6 0.0051 1.1E-07 47.0 5.2 56 88-150 221-281 (473)
369 TIGR01007 eps_fam capsular exo 96.6 0.013 2.8E-07 41.7 7.0 68 28-103 126-193 (204)
370 PRK09601 GTP-binding protein Y 96.6 0.0094 2E-07 46.4 6.6 53 12-64 31-107 (364)
371 cd03111 CpaE_like This protein 96.5 0.012 2.5E-07 37.6 5.8 60 31-99 44-106 (106)
372 PRK00771 signal recognition pa 96.5 0.053 1.1E-06 43.4 10.6 65 29-103 175-245 (437)
373 PF00448 SRP54: SRP54-type pro 96.4 0.016 3.5E-07 41.2 6.8 67 28-104 82-154 (196)
374 COG5192 BMS1 GTP-binding prote 96.4 0.081 1.8E-06 43.6 10.9 110 17-143 97-210 (1077)
375 KOG2655|consensus 96.3 0.13 2.8E-06 40.1 11.4 104 11-127 58-191 (366)
376 cd03112 CobW_like The function 96.3 0.0097 2.1E-07 40.8 4.9 65 29-102 86-158 (158)
377 TIGR00959 ffh signal recogniti 96.3 0.064 1.4E-06 42.8 10.0 65 28-103 181-252 (428)
378 TIGR01969 minD_arch cell divis 96.1 0.027 5.9E-07 41.1 6.8 66 28-102 107-172 (251)
379 PRK10867 signal recognition pa 96.1 0.092 2E-06 42.0 10.0 65 28-103 182-253 (433)
380 KOG1487|consensus 96.1 0.0061 1.3E-07 45.2 3.1 53 15-67 91-150 (358)
381 PHA02518 ParA-like protein; Pr 95.9 0.096 2.1E-06 37.1 8.5 69 28-102 75-145 (211)
382 PRK09602 translation-associate 95.8 0.028 6.1E-07 44.4 6.0 35 30-64 72-113 (396)
383 KOG1534|consensus 95.6 0.017 3.6E-07 41.7 3.6 72 30-104 98-178 (273)
384 CHL00175 minD septum-site dete 95.5 0.043 9.4E-07 41.0 5.9 65 29-102 126-190 (281)
385 TIGR00993 3a0901s04IAP86 chlor 95.5 0.24 5.1E-06 41.8 10.4 84 14-104 151-250 (763)
386 KOG2423|consensus 95.5 0.045 9.8E-07 43.0 5.7 49 49-104 209-258 (572)
387 PRK06731 flhF flagellar biosyn 95.4 0.057 1.2E-06 40.4 6.2 66 29-104 154-225 (270)
388 TIGR01968 minD_bact septum sit 95.4 0.054 1.2E-06 39.7 6.0 65 29-102 111-175 (261)
389 cd02035 ArsA ArsA ATPase funct 95.4 0.34 7.3E-06 34.9 9.9 67 30-103 114-183 (217)
390 COG1149 MinD superfamily P-loo 95.4 0.084 1.8E-06 39.4 6.6 63 30-102 164-226 (284)
391 PRK14722 flhF flagellar biosyn 95.3 0.062 1.3E-06 42.1 6.1 68 28-103 214-294 (374)
392 KOG2485|consensus 95.2 0.07 1.5E-06 40.5 6.0 66 30-105 22-88 (335)
393 PRK12727 flagellar biosynthesi 95.1 0.089 1.9E-06 43.1 6.7 65 28-103 427-497 (559)
394 PRK12724 flagellar biosynthesi 95.1 0.086 1.9E-06 41.9 6.3 66 28-103 298-372 (432)
395 PRK11889 flhF flagellar biosyn 95.0 0.08 1.7E-06 41.9 6.0 66 29-104 320-391 (436)
396 PRK12726 flagellar biosynthesi 94.8 0.078 1.7E-06 41.7 5.3 65 29-103 285-355 (407)
397 PF01656 CbiA: CobQ/CobB/MinD/ 94.7 0.11 2.3E-06 36.3 5.7 65 29-102 94-160 (195)
398 PF05783 DLIC: Dynein light in 94.6 0.051 1.1E-06 43.9 4.0 55 89-150 196-255 (472)
399 KOG0780|consensus 94.5 0.19 4.1E-06 39.6 6.8 64 27-101 181-251 (483)
400 PRK13849 putative crown gall t 94.3 0.4 8.8E-06 35.0 8.0 67 28-101 82-151 (231)
401 COG0541 Ffh Signal recognition 93.9 0.31 6.7E-06 38.8 6.9 64 28-102 181-251 (451)
402 PRK12723 flagellar biosynthesi 93.8 0.28 6.1E-06 38.7 6.7 66 28-103 253-325 (388)
403 TIGR03029 EpsG chain length de 93.7 0.33 7.1E-06 36.1 6.7 64 28-99 211-274 (274)
404 PF08438 MMR_HSR1_C: GTPase of 93.4 0.11 2.3E-06 33.5 3.1 33 96-143 1-33 (109)
405 COG0552 FtsY Signal recognitio 93.4 0.48 1E-05 36.5 7.1 64 28-102 220-296 (340)
406 PRK05703 flhF flagellar biosyn 93.4 0.39 8.4E-06 38.4 6.9 66 28-103 298-370 (424)
407 PRK11670 antiporter inner memb 92.9 0.42 9E-06 37.5 6.4 69 27-102 213-281 (369)
408 cd02032 Bchl_like This family 92.9 0.43 9.4E-06 35.3 6.2 69 28-101 114-183 (267)
409 cd02117 NifH_like This family 92.6 0.56 1.2E-05 33.5 6.3 69 27-102 114-187 (212)
410 TIGR01005 eps_transp_fam exopo 92.4 0.5 1.1E-05 40.4 6.6 67 28-102 654-720 (754)
411 smart00010 small_GTPase Small 92.3 0.065 1.4E-06 34.3 1.1 50 47-102 40-89 (124)
412 TIGR03815 CpaE_hom_Actino heli 92.3 0.45 9.7E-06 36.4 5.7 64 28-101 203-266 (322)
413 COG0523 Putative GTPases (G3E 92.1 0.67 1.5E-05 35.7 6.5 90 30-141 85-184 (323)
414 PRK14721 flhF flagellar biosyn 91.9 0.44 9.5E-06 38.0 5.4 68 27-104 267-340 (420)
415 TIGR03371 cellulose_yhjQ cellu 91.3 0.73 1.6E-05 33.4 5.8 34 30-65 115-148 (246)
416 PRK09602 translation-associate 91.2 0.37 8.1E-06 38.1 4.4 45 88-149 216-260 (396)
417 COG4963 CpaE Flp pilus assembl 91.2 1.1 2.4E-05 35.0 6.7 67 29-104 217-285 (366)
418 PRK10818 cell division inhibit 91.2 0.98 2.1E-05 33.4 6.4 36 29-66 113-148 (270)
419 PRK13185 chlL protochlorophyll 91.1 0.65 1.4E-05 34.4 5.4 69 28-101 116-185 (270)
420 cd00550 ArsA_ATPase Oxyanion-t 90.9 4.8 0.0001 29.7 9.8 68 28-102 123-201 (254)
421 TIGR02475 CobW cobalamin biosy 90.9 3.9 8.5E-05 31.7 9.6 36 30-65 93-135 (341)
422 COG0455 flhG Antiactivator of 90.6 2.5 5.5E-05 31.5 8.0 63 30-101 113-177 (262)
423 TIGR01281 DPOR_bchL light-inde 90.4 0.78 1.7E-05 33.9 5.3 66 28-101 114-183 (268)
424 PRK14723 flhF flagellar biosyn 90.3 1.2 2.6E-05 38.2 6.8 67 28-104 262-337 (767)
425 PRK09841 cryptic autophosphory 90.2 1.4 3E-05 37.7 7.2 66 29-102 640-705 (726)
426 COG1419 FlhF Flagellar GTP-bin 89.6 1.4 3E-05 35.0 6.1 67 28-104 280-352 (407)
427 cd02042 ParA ParA and ParB of 89.3 0.66 1.4E-05 28.9 3.6 34 30-65 40-73 (104)
428 PRK06995 flhF flagellar biosyn 89.2 1.2 2.7E-05 36.2 5.8 67 27-103 332-404 (484)
429 TIGR03348 VI_IcmF type VI secr 89.2 0.77 1.7E-05 41.4 5.1 72 30-103 161-256 (1169)
430 PRK11519 tyrosine kinase; Prov 89.2 2 4.3E-05 36.8 7.3 66 29-102 635-700 (719)
431 PRK10037 cell division protein 89.0 1.8 3.9E-05 31.8 6.3 35 28-64 116-150 (250)
432 PHA02519 plasmid partition pro 88.9 1.4 3.1E-05 34.8 5.9 35 28-64 233-267 (387)
433 CHL00072 chlL photochlorophyll 88.9 1.3 2.7E-05 33.6 5.5 69 28-101 114-183 (290)
434 PF02492 cobW: CobW/HypB/UreG, 88.1 3.6 7.7E-05 28.6 7.0 65 29-103 84-154 (178)
435 KOG0085|consensus 87.7 0.059 1.3E-06 39.5 -2.2 88 14-103 183-279 (359)
436 KOG3022|consensus 87.7 1 2.2E-05 33.9 4.1 65 25-97 152-217 (300)
437 PRK11537 putative GTP-binding 87.6 4.9 0.00011 30.9 8.0 66 30-104 91-164 (318)
438 TIGR03018 pepcterm_TyrKin exop 87.2 3.4 7.4E-05 29.4 6.6 35 31-66 150-184 (207)
439 PRK13705 plasmid-partitioning 86.4 3.4 7.4E-05 32.6 6.7 35 28-64 233-267 (388)
440 TIGR03453 partition_RepA plasm 86.3 2.6 5.7E-05 33.1 6.1 36 28-65 233-268 (387)
441 cd01851 GBP Guanylate-binding 86.1 3.7 8.1E-05 29.8 6.4 50 16-65 43-103 (224)
442 TIGR00092 GTP-binding protein 85.1 3.1 6.7E-05 32.7 5.8 52 14-65 34-109 (368)
443 PRK13869 plasmid-partitioning 84.1 5 0.00011 31.9 6.7 36 28-65 250-285 (405)
444 PRK13505 formate--tetrahydrofo 83.3 7.1 0.00015 32.3 7.2 43 76-127 359-401 (557)
445 PF10087 DUF2325: Uncharacteri 82.2 6.4 0.00014 24.4 5.4 45 41-95 36-80 (97)
446 KOG1533|consensus 82.1 2 4.2E-05 31.8 3.4 73 29-104 96-177 (290)
447 PRK00090 bioD dithiobiotin syn 81.9 3.2 6.8E-05 29.8 4.5 68 28-102 102-174 (222)
448 cd02040 NifH NifH gene encodes 81.6 6.5 0.00014 28.9 6.2 38 28-65 115-153 (270)
449 PF09547 Spore_IV_A: Stage IV 81.5 8.3 0.00018 31.1 6.8 50 79-143 170-219 (492)
450 TIGR00347 bioD dethiobiotin sy 80.9 6.5 0.00014 26.7 5.6 10 30-39 100-109 (166)
451 COG0012 Predicted GTPase, prob 80.7 7.8 0.00017 30.5 6.4 35 30-64 67-108 (372)
452 PRK13231 nitrogenase reductase 80.6 4 8.6E-05 30.1 4.7 38 28-65 112-150 (264)
453 PF05014 Nuc_deoxyrib_tr: Nucl 80.4 6 0.00013 25.2 5.0 47 46-101 54-100 (113)
454 TIGR03596 GTPase_YlqF ribosome 78.9 2 4.3E-05 32.2 2.7 27 11-40 147-173 (276)
455 PRK09563 rbgA GTPase YlqF; Rev 78.6 2.4 5.2E-05 31.9 3.1 27 12-41 151-177 (287)
456 KOG2485|consensus 77.1 2 4.3E-05 33.0 2.2 31 10-40 176-206 (335)
457 cd01983 Fer4_NifH The Fer4_Nif 76.1 14 0.00029 21.8 5.6 36 31-66 35-71 (99)
458 PF07015 VirC1: VirC1 protein; 75.5 22 0.00049 26.1 7.2 67 29-102 83-152 (231)
459 COG1161 Predicted GTPases [Gen 75.4 2 4.4E-05 33.0 1.9 29 9-40 159-187 (322)
460 TIGR00157 ribosome small subun 74.1 3 6.5E-05 30.7 2.4 26 14-43 159-184 (245)
461 KOG1707|consensus 72.0 4.7 0.0001 33.5 3.2 65 52-129 494-559 (625)
462 PRK13232 nifH nitrogenase redu 71.8 16 0.00035 27.1 5.9 38 28-65 115-153 (273)
463 PRK13796 GTPase YqeH; Provisio 71.6 2.8 6.2E-05 32.8 1.9 30 9-41 192-221 (365)
464 TIGR03597 GTPase_YqeH ribosome 71.5 3.9 8.5E-05 31.9 2.7 56 9-67 186-251 (360)
465 PF14331 ImcF-related_N: ImcF- 70.5 7.3 0.00016 29.1 3.8 15 88-103 68-82 (266)
466 COG0489 Mrp ATPases involved i 70.2 27 0.00058 26.1 6.8 69 27-103 164-232 (265)
467 KOG3859|consensus 70.0 21 0.00045 27.3 6.0 86 30-127 95-209 (406)
468 COG1192 Soj ATPases involved i 69.7 19 0.00042 26.3 5.9 34 28-63 118-151 (259)
469 TIGR02016 BchX chlorophyllide 69.5 13 0.00027 28.3 5.0 70 29-102 122-194 (296)
470 COG0012 Predicted GTPase, prob 68.5 9 0.00019 30.1 4.0 51 89-151 206-256 (372)
471 PF10609 ParA: ParA/MinD ATPas 68.1 24 0.00053 21.4 5.9 61 31-100 2-63 (81)
472 TIGR01287 nifH nitrogenase iro 67.0 8.3 0.00018 28.6 3.5 38 28-65 114-152 (275)
473 COG1908 FrhD Coenzyme F420-red 66.2 27 0.00058 23.0 5.2 62 85-147 49-110 (132)
474 KOG4146|consensus 66.1 14 0.00031 23.0 3.7 10 93-102 67-76 (101)
475 PF06564 YhjQ: YhjQ protein; 65.0 54 0.0012 24.3 8.7 34 28-63 116-149 (243)
476 PF09140 MipZ: ATPase MipZ; I 64.2 7.4 0.00016 29.0 2.7 94 29-129 98-207 (261)
477 PRK12288 GTPase RsgA; Reviewed 63.8 8 0.00017 30.1 3.0 25 16-43 246-270 (347)
478 COG3523 IcmF Type VI protein s 63.3 15 0.00033 33.4 4.9 77 22-104 165-270 (1188)
479 KOG2743|consensus 62.6 72 0.0016 24.8 8.2 85 30-122 146-239 (391)
480 PF03193 DUF258: Protein of un 61.9 2.7 5.9E-05 29.0 0.1 13 31-43 88-100 (161)
481 PRK13233 nifH nitrogenase redu 61.1 12 0.00026 27.7 3.4 33 28-65 117-155 (275)
482 cd01854 YjeQ_engC YjeQ/EngC. 60.7 8.4 0.00018 29.0 2.6 26 15-43 201-226 (287)
483 COG3613 Nucleoside 2-deoxyribo 59.6 42 0.00091 23.5 5.5 50 44-101 59-108 (172)
484 KOG0781|consensus 58.9 34 0.00074 28.2 5.6 39 28-66 465-509 (587)
485 PF13614 AAA_31: AAA domain; P 58.3 11 0.00024 25.0 2.7 33 30-63 118-150 (157)
486 PRK09601 GTP-binding protein Y 57.3 43 0.00092 26.4 5.9 47 89-147 199-245 (364)
487 PRK12289 GTPase RsgA; Reviewed 56.7 8.6 0.00019 30.0 2.1 26 16-44 213-238 (352)
488 PRK13695 putative NTPase; Prov 52.6 40 0.00086 23.0 4.7 43 49-101 92-137 (174)
489 cd04170 EF-G_bact Elongation f 52.6 11 0.00024 27.8 2.1 18 133-150 240-257 (268)
490 KOG1980|consensus 50.3 49 0.0011 28.1 5.4 52 44-105 132-184 (754)
491 PTZ00258 GTP-binding protein; 48.5 60 0.0013 25.9 5.6 47 89-147 220-268 (390)
492 PRK13230 nitrogenase reductase 48.4 12 0.00027 27.8 1.7 38 28-65 115-153 (279)
493 KOG0446|consensus 47.3 3.3 7.1E-05 35.1 -1.6 35 30-64 132-179 (657)
494 PRK13601 putative L7Ae-like ri 47.0 44 0.00094 20.3 3.7 48 45-102 14-62 (82)
495 PF00532 Peripla_BP_1: Peripla 46.4 1.2E+02 0.0026 22.5 7.2 60 28-102 30-91 (279)
496 PF05368 NmrA: NmrA-like famil 44.6 1.1E+02 0.0024 21.7 7.8 79 44-128 55-135 (233)
497 cd02033 BchX Chlorophyllide re 44.2 36 0.00078 26.4 3.7 68 29-102 147-219 (329)
498 PRK06683 hypothetical protein; 40.0 70 0.0015 19.3 3.8 50 44-102 16-65 (82)
499 PRK13234 nifH nitrogenase redu 39.6 45 0.00097 25.2 3.6 38 28-65 118-156 (295)
500 PRK13602 putative ribosomal pr 39.5 73 0.0016 19.1 3.9 49 45-102 17-65 (82)
No 1
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.6e-31 Score=199.52 Aligned_cols=144 Identities=49% Similarity=0.796 Sum_probs=136.8
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+|.+++|||||+|++.....|+.+.+.|+|+|+|||++|.+.++..+.+||++|||||+..+.|+++|....|+.+++..
T Consensus 60 lD~tkeERerGvTi~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~L 139 (428)
T COG5256 60 LDKTKEERERGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFL 139 (428)
T ss_pred ecCChhHHhcceEEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++..|+.++|+++||||++ +|++.+++++++++..+.+..|+.+. +++|||+||.+|.|+.+..
T Consensus 140 a~tlGi~~lIVavNKMD~v--~wde~rf~ei~~~v~~l~k~~G~~~~-~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 140 ARTLGIKQLIVAVNKMDLV--SWDEERFEEIVSEVSKLLKMVGYNPK-DVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred HHhcCCceEEEEEEccccc--ccCHHHHHHHHHHHHHHHHHcCCCcc-CCeEEecccccCCcccccC
Confidence 9999999999999999965 59999999999999998889999765 7899999999999998765
No 2
>KOG0458|consensus
Probab=99.96 E-value=1.5e-28 Score=192.28 Aligned_cols=146 Identities=47% Similarity=0.824 Sum_probs=136.9
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+|.+.+||+||+|++.....|+.+.+.++|+|+|||.+|+..++....++|+++||+|++.+.|+.+|+...|+.++...
T Consensus 230 LDeT~eERerGvTm~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~l 309 (603)
T KOG0458|consen 230 LDETKEERERGVTMDVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALL 309 (603)
T ss_pred eccchhhhhcceeEEeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHH-HHcCCCCCCCCeEEEeecccCCCCccCCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYL-KKLGFNAAKDLSFMPCSGELEKNPLLLGIE 153 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~~ 153 (156)
++..|+.++|+++|||| ...|++.++++++.++..++ +..||... ++.|||+|+++|+|+-...++
T Consensus 310 lr~Lgi~qlivaiNKmD--~V~Wsq~RF~eIk~~l~~fL~~~~gf~es-~v~FIPiSGl~GeNL~k~~~~ 376 (603)
T KOG0458|consen 310 LRSLGISQLIVAINKMD--LVSWSQDRFEEIKNKLSSFLKESCGFKES-SVKFIPISGLSGENLIKIEQE 376 (603)
T ss_pred HHHcCcceEEEEeeccc--ccCccHHHHHHHHHHHHHHHHHhcCcccC-CcceEecccccCCcccccccc
Confidence 99999999999999999 56899999999999999999 77788543 679999999999999876554
No 3
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.96 E-value=6.6e-28 Score=189.69 Aligned_cols=146 Identities=49% Similarity=0.774 Sum_probs=133.5
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+|..++|+++|+|++.....++++++.++|+|||||++|...+..++..+|++++|+|+..|.++..|....++.+++..
T Consensus 60 ~D~~~~Er~rGiTid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~ 139 (446)
T PTZ00141 60 LDKLKAERERGITIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALL 139 (446)
T ss_pred hcCChHHHhcCEeEEeeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999877788777899999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...|+|++|+++||||+....+++.+++++.+++..++...++... ++++||+||++|+|+.+.+
T Consensus 140 ~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~-~~~~ipiSa~~g~ni~~~~ 205 (446)
T PTZ00141 140 AFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPE-KVPFIPISGWQGDNMIEKS 205 (446)
T ss_pred HHHcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcc-cceEEEeecccCCCcccCC
Confidence 99999998889999999766667788899999999999999888543 6899999999999997643
No 4
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.96 E-value=7.3e-28 Score=189.41 Aligned_cols=147 Identities=44% Similarity=0.684 Sum_probs=131.9
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|..++||++|+|++.....++++++.++++|||||++|.+.+..++..+|++|+|+|+..|.++..+....++.+++.
T Consensus 59 ~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~ 138 (447)
T PLN00043 59 VLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHAL 138 (447)
T ss_pred hhcCCHhHHhcCceEEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999876777777789999999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+...++|++|+++||||+....+...++.++.+++..+++..|+... +++|+|+||++|+|+.+..
T Consensus 139 ~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~-~~~~ipiSa~~G~ni~~~~ 205 (447)
T PLN00043 139 LAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPD-KIPFVPISGFEGDNMIERS 205 (447)
T ss_pred HHHHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcc-cceEEEEeccccccccccc
Confidence 999999987899999999765556677899999999999999998643 5799999999999997543
No 5
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.95 E-value=1.3e-26 Score=167.55 Aligned_cols=148 Identities=57% Similarity=0.934 Sum_probs=121.1
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|+.++|+++|+|++.....+.+.+..+++||||||.+|...+..+++.+|++++|+|++++..+..|....+..+++.
T Consensus 51 ~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~ 130 (219)
T cd01883 51 VLDTLKEERERGVTIDVGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL 130 (219)
T ss_pred hhcCCHHHhhCccCeecceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999988643333433566777777
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.+...+.+++++++||+|+....+....+..+.+++...++..++... +++++++||++|+|+++-++
T Consensus 131 ~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~-~~~ii~iSA~tg~gi~~~~~ 198 (219)
T cd01883 131 LARTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPK-DVPFIPISGLTGDNLIEKSE 198 (219)
T ss_pred HHHHcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcC-CceEEEeecCcCCCCCcCCC
Confidence 676677665899999999875444455577777888877888776432 57999999999999986653
No 6
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.94 E-value=7.4e-26 Score=160.71 Aligned_cols=134 Identities=31% Similarity=0.453 Sum_probs=117.4
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|+.++|+++|+|++.....+++++.+++++|||||.+|...+..++..+|++++|+|+..+. ..++.+++.
T Consensus 39 ~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~-------~~~~~~~~~ 111 (195)
T cd01884 39 EIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGP-------MPQTREHLL 111 (195)
T ss_pred cccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCC-------cHHHHHHHH
Confidence 3688899999999999999999999999999999999999999999999999999999999886 478888999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCc
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPL 148 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~ 148 (156)
.+...++|++|+++||+|+.. .....+.+++++..+++..++.+. +++++|+||++|.|+.
T Consensus 112 ~~~~~~~~~iIvviNK~D~~~---~~~~~~~~~~~i~~~l~~~g~~~~-~v~iipiSa~~g~n~~ 172 (195)
T cd01884 112 LARQVGVPYIVVFLNKADMVD---DEELLELVEMEVRELLSKYGFDGD-NTPIVRGSALKALEGD 172 (195)
T ss_pred HHHHcCCCcEEEEEeCCCCCC---cHHHHHHHHHHHHHHHHHhccccc-CCeEEEeeCccccCCC
Confidence 999899887789999999852 233456677888888998888643 6899999999999975
No 7
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.93 E-value=3.4e-25 Score=156.55 Aligned_cols=134 Identities=32% Similarity=0.469 Sum_probs=114.6
Q ss_pred ccccHHHhhcCceeeeeeEEEE--eCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFE--TDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~--~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
.+..++|+++|+|+......+. ..++.++++|||||.+|.+.+..+++.+|++|+|||+.+|. ..++.+++
T Consensus 43 ~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~-------~~~~~~~l 115 (188)
T PF00009_consen 43 LDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGI-------QPQTEEHL 115 (188)
T ss_dssp HHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBS-------THHHHHHH
T ss_pred ccccchhhhcccccccccccccccccccceeecccccccceeecccceecccccceeeeeccccc-------cccccccc
Confidence 5778999999999999999999 99999999999999999999999999999999999999887 57889999
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHH-HHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKIL-PYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+...++| +++++||+|+. ...+.+..+++. .+++..++.....+|++++||++|.|++.|.
T Consensus 116 ~~~~~~~~p-~ivvlNK~D~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll 179 (188)
T PF00009_consen 116 KILRELGIP-IIVVLNKMDLI-----EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELL 179 (188)
T ss_dssp HHHHHTT-S-EEEEEETCTSS-----HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHH
T ss_pred ccccccccc-eEEeeeeccch-----hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHH
Confidence 999999999 89999999986 334555566665 5556666643225799999999999998764
No 8
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.5e-25 Score=167.04 Aligned_cols=135 Identities=38% Similarity=0.623 Sum_probs=124.4
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|-+.+|||.|+|++..+..|..+.++|++.|||||+.|.+++......||.+|++||+..|+ ..|+..|-..
T Consensus 61 vDGL~AEREQGITIDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-------l~QTrRHs~I 133 (431)
T COG2895 61 VDGLEAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-------LEQTRRHSFI 133 (431)
T ss_pred hhhhHHHHhcCceEEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-------HHHhHHHHHH
Confidence 367899999999999999999999999999999999999999999999999999999999998 5889999888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...|++|+++++|||||. +++++.++++.+.+..+.+++++. ...+||+||+.|.|+-.-+
T Consensus 134 ~sLLGIrhvvvAVNKmDLv--dy~e~~F~~I~~dy~~fa~~L~~~---~~~~IPiSAl~GDNV~~~s 195 (431)
T COG2895 134 ASLLGIRHVVVAVNKMDLV--DYSEEVFEAIVADYLAFAAQLGLK---DVRFIPISALLGDNVVSKS 195 (431)
T ss_pred HHHhCCcEEEEEEeeeccc--ccCHHHHHHHHHHHHHHHHHcCCC---cceEEechhccCCcccccc
Confidence 8889999999999999965 678889999999999999999985 4589999999999986543
No 9
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.93 E-value=5.1e-25 Score=171.92 Aligned_cols=136 Identities=38% Similarity=0.634 Sum_probs=118.8
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|..++|++||+|++.....+.+++.+++|+|||||++|.+.+..++..+|++++|+|+..|. ..++.+++.
T Consensus 54 ~~D~~~eE~~rgiTid~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~-------~~qt~~~~~ 126 (406)
T TIGR02034 54 LVDGLQAEREQGITIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGV-------LEQTRRHSY 126 (406)
T ss_pred eccCChHHhcCCcCeEeeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-------ccccHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999999987 478888888
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+...+++++|+++||+|+.. +....++++++++..+++..++. +.+++|+||++|+|++.++
T Consensus 127 ~~~~~~~~~iivviNK~D~~~--~~~~~~~~i~~~~~~~~~~~~~~---~~~iipiSA~~g~ni~~~~ 189 (406)
T TIGR02034 127 IASLLGIRHVVLAVNKMDLVD--YDEEVFENIKKDYLAFAEQLGFR---DVTFIPLSALKGDNVVSRS 189 (406)
T ss_pred HHHHcCCCcEEEEEEeccccc--chHHHHHHHHHHHHHHHHHcCCC---CccEEEeecccCCCCcccc
Confidence 888888887889999999753 33455677777888777777763 5689999999999999765
No 10
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.93 E-value=1.7e-24 Score=169.99 Aligned_cols=139 Identities=43% Similarity=0.677 Sum_probs=117.0
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCC--CccccccCCCcchHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARK--GEFETGFDRGGQTREH 81 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~--~~~~~~~~~~~~~~~~ 81 (156)
.+|..++|+++|+|++.....+.+++++++|||||||++|.+.+..+++.+|++++|+|+++ +. ..++.++
T Consensus 58 ~~D~~~~Er~rG~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~-------~~~~~~~ 130 (425)
T PRK12317 58 VMDRLKEERERGVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGV-------MPQTREH 130 (425)
T ss_pred hhccCHhHhhcCccceeeeEEEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCC-------CcchHHH
Confidence 35888999999999999999999999999999999999999988888999999999999987 54 4667778
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+..+...+.+++++++||+|+.. +....+..+.+++..+++..++... .++++++||++|+|+++++.
T Consensus 131 ~~~~~~~~~~~iivviNK~Dl~~--~~~~~~~~~~~~i~~~l~~~g~~~~-~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 131 VFLARTLGINQLIVAINKMDAVN--YDEKRYEEVKEEVSKLLKMVGYKPD-DIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHcCCCeEEEEEEcccccc--ccHHHHHHHHHHHHHHHHhhCCCcC-cceEEEeecccCCCcccccc
Confidence 77777778766899999999863 2344566677778888887776432 47899999999999998764
No 11
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.92 E-value=4.2e-24 Score=153.27 Aligned_cols=137 Identities=37% Similarity=0.586 Sum_probs=111.8
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..|..++|+++|+|++.....+.+++.++.+|||||+.+|...+..+++.+|++++|+|++.+. ..+....+.
T Consensus 51 ~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~-------~~~~~~~~~ 123 (208)
T cd04166 51 LVDGLQAEREQGITIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGV-------LEQTRRHSY 123 (208)
T ss_pred eccCChhhhcCCcCeecceeEEecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCc-------cHhHHHHHH
Confidence 3688999999999999999999999999999999999999888889999999999999998875 345555666
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.+...+.|++|+++||+|+... ....+..+.+++..+++.+++. ..+++++||++|.|+.+.+.
T Consensus 124 ~~~~~~~~~iIvviNK~D~~~~--~~~~~~~i~~~~~~~~~~~~~~---~~~ii~iSA~~g~ni~~~~~ 187 (208)
T cd04166 124 ILSLLGIRHVVVAVNKMDLVDY--SEEVFEEIVADYLAFAAKLGIE---DITFIPISALDGDNVVSRSE 187 (208)
T ss_pred HHHHcCCCcEEEEEEchhcccC--CHHHHHHHHHHHHHHHHHcCCC---CceEEEEeCCCCCCCccCCC
Confidence 6666676657889999997532 2334556667777777777652 35799999999999998764
No 12
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.92 E-value=6.3e-24 Score=168.34 Aligned_cols=138 Identities=38% Similarity=0.587 Sum_probs=117.6
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|..++|++||+|++.....+.+++.+++|||||||++|.+.+..++..+|++++|+|+..|. ..++.+++.
T Consensus 81 ~~D~~~eEr~rgiTid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~-------~~qt~~~~~ 153 (474)
T PRK05124 81 LVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGV-------LDQTRRHSF 153 (474)
T ss_pred hccCChHHhhcCCCeEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc-------cccchHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999887 367788887
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.+...+++++|+++||+|+.. ++...+.++++++..+++..++. ...+++|+||++|.|++.++.
T Consensus 154 l~~~lg~~~iIvvvNKiD~~~--~~~~~~~~i~~~l~~~~~~~~~~--~~~~iipvSA~~g~ni~~~~~ 218 (474)
T PRK05124 154 IATLLGIKHLVVAVNKMDLVD--YSEEVFERIREDYLTFAEQLPGN--LDIRFVPLSALEGDNVVSQSE 218 (474)
T ss_pred HHHHhCCCceEEEEEeecccc--chhHHHHHHHHHHHHHHHhcCCC--CCceEEEEEeecCCCcccccc
Confidence 787778776899999999753 34455777777787777766632 257899999999999998764
No 13
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.91 E-value=2.2e-23 Score=163.79 Aligned_cols=141 Identities=41% Similarity=0.662 Sum_probs=116.7
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+|+.++|+++|+|++.....+.+++..++|||||||++|.+.+..++..+|++++|+|++++.+ ....++.+++..
T Consensus 60 ~d~~~~e~~rg~Tid~~~~~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~----~~~~~t~~~~~~ 135 (426)
T TIGR00483 60 MDRLKEERERGVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEF----EVQPQTREHAFL 135 (426)
T ss_pred hccCHHHhhcCceEEEEEEEEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCc----ccCCchHHHHHH
Confidence 6888999999999999999999999999999999999999999999999999999999988731 113566666666
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+...+.+++|+++||+|+.. +....+++.++++..+++..++... .++++++||++|.|++++..
T Consensus 136 ~~~~~~~~iIVviNK~Dl~~--~~~~~~~~~~~ei~~~~~~~g~~~~-~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 136 ARTLGINQLIVAINKMDSVN--YDEEEFEAIKKEVSNLIKKVGYNPD-TVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred HHHcCCCeEEEEEEChhccC--ccHHHHHHHHHHHHHHHHHcCCCcc-cceEEEeecccccccccccc
Confidence 66667666899999999853 3345567778888888888876432 57999999999999987653
No 14
>PLN03126 Elongation factor Tu; Provisional
Probab=99.90 E-value=6.2e-23 Score=162.42 Aligned_cols=133 Identities=32% Similarity=0.494 Sum_probs=116.9
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|++++|+++|+|++.....+.+++.++++||||||++|.+.+..++..+|++++|+|+.+|. ..++.+++.
T Consensus 118 ~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~-------~~qt~e~~~ 190 (478)
T PLN03126 118 EIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGP-------MPQTKEHIL 190 (478)
T ss_pred cccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-------cHHHHHHHH
Confidence 3688999999999999999999999999999999999999999999999999999999999987 488999999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNP 147 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi 147 (156)
.+...++|++|+++||+|+.. ....++.+++++..+++..++.. .+++++|+||++|.++
T Consensus 191 ~~~~~gi~~iIvvvNK~Dl~~---~~~~~~~i~~~i~~~l~~~g~~~-~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 191 LAKQVGVPNMVVFLNKQDQVD---DEELLELVELEVRELLSSYEFPG-DDIPIISGSALLALEA 250 (478)
T ss_pred HHHHcCCCeEEEEEecccccC---HHHHHHHHHHHHHHHHHhcCCCc-CcceEEEEEccccccc
Confidence 999999997788999999863 23346667778889999888754 3689999999999764
No 15
>CHL00071 tufA elongation factor Tu
Probab=99.90 E-value=5.7e-23 Score=160.63 Aligned_cols=134 Identities=34% Similarity=0.508 Sum_probs=116.6
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|++++|+++|+|++.....+.+++.++.|+|||||.+|.+.+..++..+|++++|+|+..+. ..++.+++.
T Consensus 49 ~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~-------~~qt~~~~~ 121 (409)
T CHL00071 49 EIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGP-------MPQTKEHIL 121 (409)
T ss_pred cccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCC-------cHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999999887 478889999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCc
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPL 148 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~ 148 (156)
.+...++|++|+++||+|+.. ....++.+++++..+++..++.. +.++++++||++|.|+-
T Consensus 122 ~~~~~g~~~iIvvvNK~D~~~---~~~~~~~~~~~l~~~l~~~~~~~-~~~~ii~~Sa~~g~n~~ 182 (409)
T CHL00071 122 LAKQVGVPNIVVFLNKEDQVD---DEELLELVELEVRELLSKYDFPG-DDIPIVSGSALLALEAL 182 (409)
T ss_pred HHHHcCCCEEEEEEEccCCCC---HHHHHHHHHHHHHHHHHHhCCCC-CcceEEEcchhhccccc
Confidence 988899997788999999863 23345667778888888888754 35899999999998764
No 16
>PRK12736 elongation factor Tu; Reviewed
Probab=99.90 E-value=6.7e-23 Score=159.55 Aligned_cols=131 Identities=33% Similarity=0.487 Sum_probs=112.7
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|..++|+++|+|++.....+..++++++|+|||||++|...+..++..+|++++|+|+..+. ..++.+++.
T Consensus 49 ~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~-------~~~t~~~~~ 121 (394)
T PRK12736 49 SIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGP-------MPQTREHIL 121 (394)
T ss_pred hhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-------chhHHHHHH
Confidence 3688899999999999999999888999999999999999999999999999999999999887 478889999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEK 145 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~ 145 (156)
.+...++|++|+++||+|+.. ....++.+++++..+++..++... ..+++++||++|.
T Consensus 122 ~~~~~g~~~~IvviNK~D~~~---~~~~~~~i~~~i~~~l~~~~~~~~-~~~ii~vSa~~g~ 179 (394)
T PRK12736 122 LARQVGVPYLVVFLNKVDLVD---DEELLELVEMEVRELLSEYDFPGD-DIPVIRGSALKAL 179 (394)
T ss_pred HHHHcCCCEEEEEEEecCCcc---hHHHHHHHHHHHHHHHHHhCCCcC-CccEEEeeccccc
Confidence 999899997788999999863 223445566778888888887543 5799999999984
No 17
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.90 E-value=8.4e-23 Score=159.06 Aligned_cols=131 Identities=33% Similarity=0.457 Sum_probs=111.2
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|..++|+++|+|++.....+..++++++|||||||++|...+..++.++|++++|+|+.++. ..++.+++.
T Consensus 49 ~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~-------~~qt~e~l~ 121 (394)
T TIGR00485 49 QIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGP-------MPQTREHIL 121 (394)
T ss_pred cccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCC-------cHHHHHHHH
Confidence 4688899999999999999999888899999999999999999999999999999999999886 478889999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEK 145 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~ 145 (156)
.+...++|++|+++||+|+... ....+.+++++..+++..++... +++++++||++|.
T Consensus 122 ~~~~~gi~~iIvvvNK~Dl~~~---~~~~~~~~~~i~~~l~~~~~~~~-~~~ii~vSa~~g~ 179 (394)
T TIGR00485 122 LARQVGVPYIVVFLNKCDMVDD---EELLELVEMEVRELLSEYDFPGD-DTPIIRGSALKAL 179 (394)
T ss_pred HHHHcCCCEEEEEEEecccCCH---HHHHHHHHHHHHHHHHhcCCCcc-CccEEECcccccc
Confidence 8888899966679999998631 22345566678888888776432 4799999999985
No 18
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.90 E-value=1.3e-22 Score=166.16 Aligned_cols=137 Identities=34% Similarity=0.588 Sum_probs=117.1
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|.+++|+++|+|++.....+.+++.+++|+|||||++|.+.+..++..+|++++|+|+..+. ..++.+++.
T Consensus 78 ~~d~~~~E~~rg~Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~-------~~~t~e~~~ 150 (632)
T PRK05506 78 LVDGLAAEREQGITIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGV-------LTQTRRHSF 150 (632)
T ss_pred eccCCHHHHhCCcCceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCc-------cccCHHHHH
Confidence 4688899999999999999999999999999999999999999999999999999999999887 467888888
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.+...+++++|+++||+|+.. +....++++.+++..+++..++. +.+++|+||++|.|++.+..
T Consensus 151 ~~~~~~~~~iivvvNK~D~~~--~~~~~~~~i~~~i~~~~~~~~~~---~~~iipiSA~~g~ni~~~~~ 214 (632)
T PRK05506 151 IASLLGIRHVVLAVNKMDLVD--YDQEVFDEIVADYRAFAAKLGLH---DVTFIPISALKGDNVVTRSA 214 (632)
T ss_pred HHHHhCCCeEEEEEEeccccc--chhHHHHHHHHHHHHHHHHcCCC---CccEEEEecccCCCcccccc
Confidence 888788776889999999753 34445677777787777777772 46899999999999987553
No 19
>PRK12735 elongation factor Tu; Reviewed
Probab=99.89 E-value=2.9e-22 Score=156.06 Aligned_cols=133 Identities=33% Similarity=0.455 Sum_probs=112.7
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|..++|+++|+|++.....+..++.+++|+|||||++|.+.+..++..+|++++|+|+.++. ..++.+++.
T Consensus 49 ~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~-------~~qt~e~l~ 121 (396)
T PRK12735 49 QIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGP-------MPQTREHIL 121 (396)
T ss_pred hccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCC-------chhHHHHHH
Confidence 4688899999999999999999989999999999999999999999999999999999999876 477888888
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNP 147 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi 147 (156)
.+...++|++++++||+|+.. ....++.+++++..+++..++.. .+.+++++||++|.|.
T Consensus 122 ~~~~~gi~~iivvvNK~Dl~~---~~~~~~~~~~ei~~~l~~~~~~~-~~~~ii~~Sa~~g~n~ 181 (396)
T PRK12735 122 LARQVGVPYIVVFLNKCDMVD---DEELLELVEMEVRELLSKYDFPG-DDTPIIRGSALKALEG 181 (396)
T ss_pred HHHHcCCCeEEEEEEecCCcc---hHHHHHHHHHHHHHHHHHcCCCc-CceeEEecchhccccC
Confidence 888889996556899999863 23345566677888888887743 2579999999999764
No 20
>PRK00049 elongation factor Tu; Reviewed
Probab=99.89 E-value=4e-22 Score=155.24 Aligned_cols=132 Identities=33% Similarity=0.477 Sum_probs=112.7
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|+.++|+++|+|++.....+.+++.+++|+|||||++|...+..++..+|++++|+|+..+. ..++.+++.
T Consensus 49 ~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~-------~~qt~~~~~ 121 (396)
T PRK00049 49 QIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGP-------MPQTREHIL 121 (396)
T ss_pred hccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCC-------chHHHHHHH
Confidence 4688899999999999999999889999999999999999999999999999999999999886 478888999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKN 146 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~g 146 (156)
.+...++|.+|+++||+|+.. ....++.+++++..++...++.+ .+.+++++||++|.+
T Consensus 122 ~~~~~g~p~iiVvvNK~D~~~---~~~~~~~~~~~i~~~l~~~~~~~-~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 122 LARQVGVPYIVVFLNKCDMVD---DEELLELVEMEVRELLSKYDFPG-DDTPIIRGSALKALE 180 (396)
T ss_pred HHHHcCCCEEEEEEeecCCcc---hHHHHHHHHHHHHHHHHhcCCCc-cCCcEEEeecccccC
Confidence 888899995456899999863 23345666777888888888743 368999999999864
No 21
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.89 E-value=3.2e-22 Score=161.96 Aligned_cols=134 Identities=28% Similarity=0.406 Sum_probs=113.6
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|.+++|+++|+|++..+..+.+++..+.+||||||++|.+.+..++.++|++++|+|++++. .+++.+++..
T Consensus 25 ~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~-------~~qT~ehl~i 97 (581)
T TIGR00475 25 ADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGV-------MTQTGEHLAV 97 (581)
T ss_pred CcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCC-------cHHHHHHHHH
Confidence 367789999999999999999999999999999999999999999999999999999999886 3778888888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...++|++++++||+|+.. ...+....+++..+++..++. .+++++++||++|+|++++.
T Consensus 98 l~~lgi~~iIVVlNK~Dlv~----~~~~~~~~~ei~~~l~~~~~~--~~~~ii~vSA~tG~GI~eL~ 158 (581)
T TIGR00475 98 LDLLGIPHTIVVITKADRVN----EEEIKRTEMFMKQILNSYIFL--KNAKIFKTSAKTGQGIGELK 158 (581)
T ss_pred HHHcCCCeEEEEEECCCCCC----HHHHHHHHHHHHHHHHHhCCC--CCCcEEEEeCCCCCCchhHH
Confidence 88889987899999999863 333455566677777766553 14799999999999998875
No 22
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.89 E-value=2.7e-22 Score=163.02 Aligned_cols=133 Identities=29% Similarity=0.497 Sum_probs=112.4
Q ss_pred ccccHHHhhcCceeeeeeEEEEe-CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFET-DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.|.+++|+++|+|++..+..+.. ++..+.|||||||++|.+.+..++.++|++++|+|+.++. .+++.+++.
T Consensus 25 ~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~-------~~qT~ehl~ 97 (614)
T PRK10512 25 ADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGV-------MAQTREHLA 97 (614)
T ss_pred CccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCC-------cHHHHHHHH
Confidence 57789999999999998888766 4677999999999999999999999999999999999887 478899988
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+...++|++|+|+||+|+.. ...+....+++..++...++. ..++|++||++|+|++.|.
T Consensus 98 il~~lgi~~iIVVlNKiDlv~----~~~~~~v~~ei~~~l~~~~~~---~~~ii~VSA~tG~gI~~L~ 158 (614)
T PRK10512 98 ILQLTGNPMLTVALTKADRVD----EARIAEVRRQVKAVLREYGFA---EAKLFVTAATEGRGIDALR 158 (614)
T ss_pred HHHHcCCCeEEEEEECCccCC----HHHHHHHHHHHHHHHHhcCCC---CCcEEEEeCCCCCCCHHHH
Confidence 888888886789999999862 334556666777777766652 4689999999999998765
No 23
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=5.2e-22 Score=140.63 Aligned_cols=136 Identities=32% Similarity=0.426 Sum_probs=101.8
Q ss_pred ccccHHHhhcCceeeeeeEEEEeC--------------CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCcccc
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETD--------------RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFET 70 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~--------------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~ 70 (156)
.|....|+++|+|++.....+.+. ++.+++|||||+..+......+++.+|++++|+|+.++.
T Consensus 29 ~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~--- 105 (192)
T cd01889 29 FDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGI--- 105 (192)
T ss_pred hccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc---
Confidence 567788999999999998888776 778999999999988888888888999999999998865
Q ss_pred ccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 71 GFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
..+..+.+......+.| +++++||+|+..........+++++.+...+...++ .+++++++||++|+|+++|
T Consensus 106 ----~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~vi~iSa~~g~gi~~L 177 (192)
T cd01889 106 ----QTQTAECLVIGEILCKK-LIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRF---KNSPIIPVSAKPGGGEAEL 177 (192)
T ss_pred ----cHHHHHHHHHHHHcCCC-EEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCc---CCCCEEEEeccCCCCHHHH
Confidence 23444444445556777 899999999864332222344444444443433333 2579999999999999986
Q ss_pred C
Q psy10355 151 G 151 (156)
Q Consensus 151 ~ 151 (156)
.
T Consensus 178 ~ 178 (192)
T cd01889 178 G 178 (192)
T ss_pred H
Confidence 5
No 24
>KOG0459|consensus
Probab=99.89 E-value=7.9e-23 Score=154.63 Aligned_cols=149 Identities=71% Similarity=1.065 Sum_probs=142.1
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|+..+||++|-|++.....|+...+.|++.|+|||..|...++..+.+||..++|+.+..+.++..|+...|++++..
T Consensus 131 ~ldtn~EeR~kgKtvEvGrA~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~ 210 (501)
T KOG0459|consen 131 ALDTNGEERDKGKTVEVGRAYFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAM 210 (501)
T ss_pred EEcCchhhhhccceeeeeeEEEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+++..++.|+|+++||||-+..+|..++++++++++..+++.+|+.+..+..++|+|+.+|.++.+...
T Consensus 211 Lakt~gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 211 LAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred HHHhhccceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 999999999999999999999999999999999999999999999887788999999999999987764
No 25
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.1e-22 Score=147.26 Aligned_cols=128 Identities=33% Similarity=0.501 Sum_probs=117.4
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
-|..|+|+++|+|++.....|+..++.+..+|+|||.+|.++++....+.|++|+|+.+++|.+ +|+.+++..
T Consensus 50 id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpm-------PqTrEHiLl 122 (394)
T COG0050 50 IDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHILL 122 (394)
T ss_pred hccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCC-------Ccchhhhhh
Confidence 4778999999999999999999999999999999999999999999999999999999999994 999999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeeccc
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGEL 143 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 143 (156)
.+..|+|++++++||+|+.. +.+.++....++.+++.+.+|... +.|++.-||+.
T Consensus 123 arqvGvp~ivvflnK~Dmvd---d~ellelVemEvreLLs~y~f~gd-~~Pii~gSal~ 177 (394)
T COG0050 123 ARQVGVPYIVVFLNKVDMVD---DEELLELVEMEVRELLSEYGFPGD-DTPIIRGSALK 177 (394)
T ss_pred hhhcCCcEEEEEEecccccC---cHHHHHHHHHHHHHHHHHcCCCCC-Ccceeechhhh
Confidence 99999999999999999874 455677777889999999999765 78999999875
No 26
>PLN03127 Elongation factor Tu; Provisional
Probab=99.89 E-value=9.1e-22 Score=154.94 Aligned_cols=132 Identities=31% Similarity=0.466 Sum_probs=110.3
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|..++|+++|+|++.....|+.++.+++|+|||||++|...+..++..+|++++|+|+.++. ..++.+++.
T Consensus 98 ~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~-------~~qt~e~l~ 170 (447)
T PLN03127 98 EIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-------MPQTKEHIL 170 (447)
T ss_pred cccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCC-------chhHHHHHH
Confidence 3788899999999999999999999999999999999999999999999999999999999887 478899999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecc---cCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGE---LEKN 146 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~---~g~g 146 (156)
.+...++|++|+++||+|+.. .....+.+++++..++...++.. ..+|++++||+ +|.|
T Consensus 171 ~~~~~gip~iIvviNKiDlv~---~~~~~~~i~~~i~~~l~~~~~~~-~~vpiip~Sa~sa~~g~n 232 (447)
T PLN03127 171 LARQVGVPSLVVFLNKVDVVD---DEELLELVEMELRELLSFYKFPG-DEIPIIRGSALSALQGTN 232 (447)
T ss_pred HHHHcCCCeEEEEEEeeccCC---HHHHHHHHHHHHHHHHHHhCCCC-CcceEEEeccceeecCCC
Confidence 999999996678999999863 22234555566777777766643 25899999887 4554
No 27
>KOG0462|consensus
Probab=99.88 E-value=3.3e-22 Score=156.07 Aligned_cols=127 Identities=24% Similarity=0.302 Sum_probs=107.5
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCC---eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDR---KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~---~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
+|.+..|||||||+..+...+.|.+ +.+++||||||-+|.......+.-||++|+|||+.+|+ +.|+..-
T Consensus 97 LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGv-------qAQT~an 169 (650)
T KOG0462|consen 97 LDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGV-------QAQTVAN 169 (650)
T ss_pred hhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCc-------hHHHHHH
Confidence 6889999999999999999999887 99999999999999999999999999999999999998 5888888
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+..+.+.|.. +|.|+||+|++.++. ++...++...+. +. ..+++.+||++|.|++++
T Consensus 170 f~lAfe~~L~-iIpVlNKIDlp~adp-----e~V~~q~~~lF~---~~---~~~~i~vSAK~G~~v~~l 226 (650)
T KOG0462|consen 170 FYLAFEAGLA-IIPVLNKIDLPSADP-----ERVENQLFELFD---IP---PAEVIYVSAKTGLNVEEL 226 (650)
T ss_pred HHHHHHcCCe-EEEeeeccCCCCCCH-----HHHHHHHHHHhc---CC---ccceEEEEeccCccHHHH
Confidence 8888888988 899999999986633 333444444332 22 347899999999998864
No 28
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.88 E-value=2.4e-21 Score=139.92 Aligned_cols=135 Identities=19% Similarity=0.131 Sum_probs=105.9
Q ss_pred CccccHHHhhcCceeeeeeEEEEeC----------CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccC
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETD----------RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFD 73 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~----------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~ 73 (156)
.+|..++|++||+|+..+...+.+. ++.+++||||||.+|...+..+++.+|++++|+|+.++.
T Consensus 37 ~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~------ 110 (222)
T cd01885 37 YMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGV------ 110 (222)
T ss_pred eccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCC------
Confidence 4688999999999999987766665 788999999999999999999999999999999999987
Q ss_pred CCcchHHHHHHHHHcCCCcEEEEEeCCCCC------CcchhHHHHHHHHHHHHHHHHHcCC-------------CCCCCC
Q psy10355 74 RGGQTREHAMLAKTAGVKHLVVLINKMDDP------TVMWSEARYNECKDKILPYLKKLGF-------------NAAKDL 134 (156)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 134 (156)
..++..++..+...++| +++++||+|+. ...+....+.++.+++..++....- +|. .-
T Consensus 111 -~~~t~~~l~~~~~~~~p-~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~-~g 187 (222)
T cd01885 111 -CVQTETVLRQALKERVK-PVLVINKIDRLILELKLSPEEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQ-KG 187 (222)
T ss_pred -CHHHHHHHHHHHHcCCC-EEEEEECCCcchhhhcCCHHHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeC-CC
Confidence 46778888888878888 89999999975 2223344566666677666655521 111 11
Q ss_pred eEEEeecccCCCC
Q psy10355 135 SFMPCSGELEKNP 147 (156)
Q Consensus 135 ~~i~~Sa~~g~gi 147 (156)
.++..||+.|-+.
T Consensus 188 nv~f~S~~~gw~f 200 (222)
T cd01885 188 NVAFGSALHGWGF 200 (222)
T ss_pred cEEEEecccCEEe
Confidence 3788999988665
No 29
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.88 E-value=5.1e-21 Score=135.78 Aligned_cols=135 Identities=25% Similarity=0.268 Sum_probs=104.2
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|..+.|+++|+|+......+.+++..+.+|||||+.+|...+..+++++|++++|+|++++. ..+....+..
T Consensus 40 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-------~~~~~~~~~~ 112 (194)
T cd01891 40 MDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-------MPQTRFVLKK 112 (194)
T ss_pred cccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-------cHHHHHHHHH
Confidence 456678999999999999999999999999999999999999999999999999999998765 2445555565
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCC-CCCeEEEeecccCCCCccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA-KDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+...++| +++++||+|+.... .....+++..++...+.... .+++++++||++|.|+.+++.
T Consensus 113 ~~~~~~p-~iiv~NK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~ 175 (194)
T cd01891 113 ALELGLK-PIVVINKIDRPDAR-----PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLED 175 (194)
T ss_pred HHHcCCC-EEEEEECCCCCCCC-----HHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccccc
Confidence 5667888 79999999986321 22333444444444433211 257899999999999988754
No 30
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.88 E-value=2.6e-21 Score=156.69 Aligned_cols=131 Identities=26% Similarity=0.325 Sum_probs=108.4
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|..++|+++|+|+..+...+.|+++++++||||||.+|...+..+++.+|++++|+|+..+. ..++..++.
T Consensus 38 ~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~-------~~qT~~~l~ 110 (594)
T TIGR01394 38 VMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGP-------MPQTRFVLK 110 (594)
T ss_pred cccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCC-------cHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999999887 477888888
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCC-CCCeEEEeecccCCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA-KDLSFMPCSGELEKNP 147 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~Sa~~g~gi 147 (156)
.+...++| +|+++||+|+... ...++.+++..++...+.... ..+|++++||++|.+.
T Consensus 111 ~a~~~~ip-~IVviNKiD~~~a-----~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~ 169 (594)
T TIGR01394 111 KALELGLK-PIVVINKIDRPSA-----RPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWAS 169 (594)
T ss_pred HHHHCCCC-EEEEEECCCCCCc-----CHHHHHHHHHHHHHhhccccccccCcEEechhhcCccc
Confidence 88889999 7999999998643 233344455555554444321 2578999999999753
No 31
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.87 E-value=9.7e-22 Score=140.54 Aligned_cols=135 Identities=26% Similarity=0.360 Sum_probs=101.2
Q ss_pred ccccHHHhhcCceeeeeeEEEEeC---------------------------C------eEEEEEeCCCCcChHHHHHhhh
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETD---------------------------R------KHFTILDAPGHKSFVPNMIGGT 51 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~---------------------------~------~~~~iiDtpG~~~~~~~~~~~~ 51 (156)
.|..+.|.++|+|+......+.+. + ..++|||||||++|...+..++
T Consensus 25 ~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~ 104 (203)
T cd01888 25 TVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGA 104 (203)
T ss_pred CCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccccccEEEEEECCChHHHHHHHHHhh
Confidence 678899999999999887776653 3 7899999999999999999999
Q ss_pred hcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCC
Q psy10355 52 AQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA 131 (156)
Q Consensus 52 ~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (156)
..+|++++|+|++++.. ..+..+.+..+...+.+++++++||+|+... .......+.+...++....
T Consensus 105 ~~~D~~llVvd~~~~~~------~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~----~~~~~~~~~i~~~~~~~~~--- 171 (203)
T cd01888 105 AVMDGALLLIAANEPCP------QPQTSEHLAALEIMGLKHIIIVQNKIDLVKE----EQALENYEQIKKFVKGTIA--- 171 (203)
T ss_pred hcCCEEEEEEECCCCCC------CcchHHHHHHHHHcCCCcEEEEEEchhccCH----HHHHHHHHHHHHHHhcccc---
Confidence 99999999999987421 2456667666666676558999999998632 1223333344444433221
Q ss_pred CCCeEEEeecccCCCCccCCC
Q psy10355 132 KDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 132 ~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
..++++++||++|+|+++|.+
T Consensus 172 ~~~~i~~vSA~~g~gi~~L~~ 192 (203)
T cd01888 172 ENAPIIPISAQLKYNIDVLLE 192 (203)
T ss_pred CCCcEEEEeCCCCCCHHHHHH
Confidence 246899999999999988753
No 32
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.87 E-value=9e-22 Score=155.01 Aligned_cols=134 Identities=25% Similarity=0.393 Sum_probs=104.7
Q ss_pred ccccHHHhhcCceeeeeeEEEE---------------eC------------------CeEEEEEeCCCCcChHHHHHhhh
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFE---------------TD------------------RKHFTILDAPGHKSFVPNMIGGT 51 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~---------------~~------------------~~~~~iiDtpG~~~~~~~~~~~~ 51 (156)
.|.+++|.+||+|++..+..+. .. .+.++|+|||||++|.+.+..++
T Consensus 59 ~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~ 138 (460)
T PTZ00327 59 TVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGA 138 (460)
T ss_pred cccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHH
Confidence 5678999999999987776441 11 24799999999999999999999
Q ss_pred hcCCEEEEEEeCCCC-ccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCC
Q psy10355 52 AQADLAVLVISARKG-EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNA 130 (156)
Q Consensus 52 ~~~d~~ilvvD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (156)
..+|++++|+|+.++ . .+++.+++..+...+++++|+++||+|+... ....+..+++..+++....
T Consensus 139 ~~~D~alLVVda~~g~~-------~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~----~~~~~~~~ei~~~l~~~~~-- 205 (460)
T PTZ00327 139 AVMDAALLLIAANESCP-------QPQTSEHLAAVEIMKLKHIIILQNKIDLVKE----AQAQDQYEEIRNFVKGTIA-- 205 (460)
T ss_pred hhCCEEEEEEECCCCcc-------chhhHHHHHHHHHcCCCcEEEEEecccccCH----HHHHHHHHHHHHHHHhhcc--
Confidence 999999999999875 4 4778888888888898878999999998632 2334444455555544322
Q ss_pred CCCCeEEEeecccCCCCccCCC
Q psy10355 131 AKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 131 ~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
...++||+||++|+|++.|.+
T Consensus 206 -~~~~iipVSA~~G~nI~~Ll~ 226 (460)
T PTZ00327 206 -DNAPIIPISAQLKYNIDVVLE 226 (460)
T ss_pred -CCCeEEEeeCCCCCCHHHHHH
Confidence 357999999999999987653
No 33
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.86 E-value=1e-20 Score=129.89 Aligned_cols=132 Identities=28% Similarity=0.424 Sum_probs=97.2
Q ss_pred cccHHHhhcCceeeeeeEEEEeC-CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 6 LWLRQKREKGKTVEVGRAYFETD-RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 6 ~~~~~e~~~g~t~~~~~~~~~~~-~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+.++.++.+|+|++..+..+.+. +..+.+|||||+++|...+..+++++|++++|+|++++. ..+..+.+..
T Consensus 26 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~-------~~~~~~~~~~ 98 (164)
T cd04171 26 DRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGI-------MPQTREHLEI 98 (164)
T ss_pred ccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCc-------cHhHHHHHHH
Confidence 45667788899999988888876 889999999999999888888999999999999998754 2444454444
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...+.+++++++||+|+... .......+++...++..+. ...+++++||++|+|++++.
T Consensus 99 ~~~~~~~~~ilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~l~ 158 (164)
T cd04171 99 LELLGIKRGLVVLTKADLVDE----DWLELVEEEIRELLAGTFL---ADAPIFPVSAVTGEGIEELK 158 (164)
T ss_pred HHHhCCCcEEEEEECccccCH----HHHHHHHHHHHHHHHhcCc---CCCcEEEEeCCCCcCHHHHH
Confidence 444566338999999998632 1122233344444443322 24689999999999998764
No 34
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.86 E-value=9e-22 Score=151.66 Aligned_cols=128 Identities=22% Similarity=0.263 Sum_probs=105.8
Q ss_pred ccccHHHhhcCceeeeeeEEEEeC-----CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETD-----RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~-----~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
+|.+..|||||+|+..+...+.+. .+.++++|||||-+|.-...+++.-|.++++|||+++|. ..|+.
T Consensus 46 LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGv-------eAQTl 118 (603)
T COG0481 46 LDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-------EAQTL 118 (603)
T ss_pred hhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccch-------HHHHH
Confidence 689999999999999998887763 378999999999999989999999999999999999998 57888
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.-...+...+.. +|-|+||+||+.++. +..++++...+ |++. ...+.+||++|.||+++-
T Consensus 119 AN~YlAle~~Le-IiPViNKIDLP~Adp-----ervk~eIe~~i---Gid~---~dav~~SAKtG~gI~~iL 178 (603)
T COG0481 119 ANVYLALENNLE-IIPVLNKIDLPAADP-----ERVKQEIEDII---GIDA---SDAVLVSAKTGIGIEDVL 178 (603)
T ss_pred HHHHHHHHcCcE-EEEeeecccCCCCCH-----HHHHHHHHHHh---CCCc---chheeEecccCCCHHHHH
Confidence 777778888888 899999999986643 34455555443 5433 357999999999998753
No 35
>KOG0460|consensus
Probab=99.85 E-value=1.3e-20 Score=140.26 Aligned_cols=127 Identities=34% Similarity=0.536 Sum_probs=115.4
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
-|..|+|+.||+|+......|+...+.+.-+|+|||.+|+++++....+.|++|+||.+++|.+ +|+.+++.+
T Consensus 92 ID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~M-------PQTrEHlLL 164 (449)
T KOG0460|consen 92 IDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPM-------PQTREHLLL 164 (449)
T ss_pred hhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCC-------cchHHHHHH
Confidence 3778999999999999999999999999999999999999999999999999999999999994 999999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecc
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGE 142 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 142 (156)
++..|++++++.+||.|+.. +++.++-.+-++++.+.+.||+.. +.|+|.-||+
T Consensus 165 ArQVGV~~ivvfiNKvD~V~---d~e~leLVEmE~RElLse~gf~Gd-~~PvI~GSAL 218 (449)
T KOG0460|consen 165 ARQVGVKHIVVFINKVDLVD---DPEMLELVEMEIRELLSEFGFDGD-NTPVIRGSAL 218 (449)
T ss_pred HHHcCCceEEEEEecccccC---CHHHHHHHHHHHHHHHHHcCCCCC-CCCeeecchh
Confidence 99999999999999999873 344556666678999999999886 7899998876
No 36
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.85 E-value=1.4e-20 Score=136.32 Aligned_cols=135 Identities=24% Similarity=0.321 Sum_probs=103.0
Q ss_pred ccccHHHhhcCceeeeee------------------------EEEEeCCeEEEEEeCCCCcChHHHHHhhhh--cCCEEE
Q psy10355 5 GLWLRQKREKGKTVEVGR------------------------AYFETDRKHFTILDAPGHKSFVPNMIGGTA--QADLAV 58 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~------------------------~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~--~~d~~i 58 (156)
.+..++|.++|.|..... ..++..++.++++|||||++|.+.+..++. .+|+++
T Consensus 35 ~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~l 114 (224)
T cd04165 35 LFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAM 114 (224)
T ss_pred hhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEE
Confidence 455678889999875443 123445788999999999999999888875 789999
Q ss_pred EEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCC---------
Q psy10355 59 LVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFN--------- 129 (156)
Q Consensus 59 lvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 129 (156)
+|+|+..+. ..++.+++..+...++| +++++||+|+.. ...+....+++...++..++.
T Consensus 115 lVvda~~g~-------~~~d~~~l~~l~~~~ip-~ivvvNK~D~~~----~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~ 182 (224)
T cd04165 115 LVVAANAGI-------IGMTKEHLGLALALNIP-VFVVVTKIDLAP----ANILQETLKDLKRILKVPGVRKLPVPVKSD 182 (224)
T ss_pred EEEECCCCC-------cHHHHHHHHHHHHcCCC-EEEEEECccccC----HHHHHHHHHHHHHHhcCCCccccceeeecc
Confidence 999998876 47788899999999999 899999999753 334555555666665543322
Q ss_pred -----------CCCCCeEEEeecccCCCCccCC
Q psy10355 130 -----------AAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 130 -----------~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.....|+|++||.+|+|++.|.
T Consensus 183 ~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~ 215 (224)
T cd04165 183 DDVVLAASNFSSERIVPIFQVSNVTGEGLDLLH 215 (224)
T ss_pred cceeehhhcCCccccCcEEEeeCCCccCHHHHH
Confidence 1124599999999999999875
No 37
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=8.6e-21 Score=145.26 Aligned_cols=131 Identities=26% Similarity=0.425 Sum_probs=115.0
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+|..++|++||+|++..++.+..+++.+.|+|.|||+++.+.+..++...|+++||||+++|+ ..++.+++..
T Consensus 25 ~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl-------~~qtgEhL~i 97 (447)
T COG3276 25 TDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGL-------MAQTGEHLLI 97 (447)
T ss_pred cccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCc-------chhhHHHHHH
Confidence 688899999999999999999999999999999999999999999999999999999999998 5899999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+...|+++.++|+||+|++ ++. ++++.+..++..+.+ .+.++|++|+++|+||++|+.
T Consensus 98 Ldllgi~~giivltk~D~~----d~~---r~e~~i~~Il~~l~l---~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 98 LDLLGIKNGIIVLTKADRV----DEA---RIEQKIKQILADLSL---ANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred HHhcCCCceEEEEeccccc----cHH---HHHHHHHHHHhhccc---ccccccccccccCCCHHHHHH
Confidence 9999999889999999986 233 344445555555553 467899999999999999875
No 38
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.85 E-value=4.6e-20 Score=128.79 Aligned_cols=128 Identities=23% Similarity=0.276 Sum_probs=94.1
Q ss_pred ccccHHHhhcCceeeeeeEEEEe-----CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFET-----DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~-----~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
.++.+.|+++|+|.......+.+ .+..+++|||||+++|...+..+++.+|++|+|+|++++. ..+..
T Consensus 37 ~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~-------~~~~~ 109 (179)
T cd01890 37 LDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGV-------EAQTL 109 (179)
T ss_pred ccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCc-------cHhhH
Confidence 46677899999999887766644 4677999999999999999999999999999999998765 23444
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+..+...++| +++++||+|+.... .....+++. +..++. ..+++++||++|+|+++|.
T Consensus 110 ~~~~~~~~~~~~-iiiv~NK~Dl~~~~-----~~~~~~~~~---~~~~~~---~~~~~~~Sa~~g~gi~~l~ 169 (179)
T cd01890 110 ANFYLALENNLE-IIPVINKIDLPSAD-----PERVKQQIE---DVLGLD---PSEAILVSAKTGLGVEDLL 169 (179)
T ss_pred HHHHHHHHcCCC-EEEEEECCCCCcCC-----HHHHHHHHH---HHhCCC---cccEEEeeccCCCCHHHHH
Confidence 555555556788 89999999975321 111122222 223331 2368999999999998764
No 39
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.85 E-value=2.3e-20 Score=138.57 Aligned_cols=123 Identities=24% Similarity=0.229 Sum_probs=99.3
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|..++|+++|+|++.....+.+++.++++|||||+.+|...+..+++.+|++++|+|+..+. ..++...+.
T Consensus 38 ~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~-------~~~t~~~~~ 110 (270)
T cd01886 38 TMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGV-------EPQTETVWR 110 (270)
T ss_pred ccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCC-------CHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999999887 467788888
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELE 144 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g 144 (156)
.+...++| +++++||+|+..++ ...+.+++...+... + ...++|+||..+
T Consensus 111 ~~~~~~~p-~ivviNK~D~~~a~-----~~~~~~~l~~~l~~~---~--~~~~~Pisa~~~ 160 (270)
T cd01886 111 QADRYNVP-RIAFVNKMDRTGAD-----FFRVVEQIREKLGAN---P--VPLQLPIGEEDD 160 (270)
T ss_pred HHHHcCCC-EEEEEECCCCCCCC-----HHHHHHHHHHHhCCC---c--eEEEeccccCCC
Confidence 88888999 78999999986432 222333344333221 1 134689998744
No 40
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.85 E-value=2.3e-20 Score=151.60 Aligned_cols=129 Identities=21% Similarity=0.256 Sum_probs=100.9
Q ss_pred CccccHHHhhcCceeeeeeEEEEeC-----CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcch
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETD-----RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQT 78 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~-----~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~ 78 (156)
.+|..++|+++|+|+......+.|. ++.++|||||||.+|...+..+++.+|++|+|+|++++. ..++
T Consensus 43 ~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv-------~~qt 115 (600)
T PRK05433 43 VLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-------EAQT 115 (600)
T ss_pred cccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCC-------CHHH
Confidence 3688899999999999988888764 578999999999999999999999999999999999886 3566
Q ss_pred HHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 79 REHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 79 ~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+..+...++| +++++||+|+.... .....+++... .++. ...++++||++|.|+++|.
T Consensus 116 ~~~~~~~~~~~lp-iIvViNKiDl~~a~-----~~~v~~ei~~~---lg~~---~~~vi~iSAktG~GI~~Ll 176 (600)
T PRK05433 116 LANVYLALENDLE-IIPVLNKIDLPAAD-----PERVKQEIEDV---IGID---ASDAVLVSAKTGIGIEEVL 176 (600)
T ss_pred HHHHHHHHHCCCC-EEEEEECCCCCccc-----HHHHHHHHHHH---hCCC---cceEEEEecCCCCCHHHHH
Confidence 7777777677888 89999999985432 12222233222 3332 2358999999999997653
No 41
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.84 E-value=3.8e-20 Score=150.20 Aligned_cols=129 Identities=21% Similarity=0.261 Sum_probs=99.3
Q ss_pred CccccHHHhhcCceeeeeeEEEEeC--C---eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcch
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETD--R---KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQT 78 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~--~---~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~ 78 (156)
++|..++|+++|+|+..+...+.|. + +.++|||||||.+|...+..+++.+|++|+|+|++++. ..++
T Consensus 39 ~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~-------~~qt 111 (595)
T TIGR01393 39 VLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGI-------EAQT 111 (595)
T ss_pred ccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCC-------CHhH
Confidence 4688899999999999988877663 2 78999999999999999999999999999999999876 3566
Q ss_pred HHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 79 REHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 79 ~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+..+...++| +++++||+|+.... .....+++.. ..++. ..+++++||++|.|++.|.
T Consensus 112 ~~~~~~~~~~~ip-iIiViNKiDl~~~~-----~~~~~~el~~---~lg~~---~~~vi~vSAktG~GI~~Ll 172 (595)
T TIGR01393 112 LANVYLALENDLE-IIPVINKIDLPSAD-----PERVKKEIEE---VIGLD---ASEAILASAKTGIGIEEIL 172 (595)
T ss_pred HHHHHHHHHcCCC-EEEEEECcCCCccC-----HHHHHHHHHH---HhCCC---cceEEEeeccCCCCHHHHH
Confidence 6666666667888 89999999985322 1222223322 22331 1368999999999998653
No 42
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.84 E-value=4.2e-20 Score=144.38 Aligned_cols=134 Identities=28% Similarity=0.319 Sum_probs=100.3
Q ss_pred ccccHHHhhcCceeeeeeEEEE--------------e------------CCeEEEEEeCCCCcChHHHHHhhhhcCCEEE
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFE--------------T------------DRKHFTILDAPGHKSFVPNMIGGTAQADLAV 58 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~--------------~------------~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~i 58 (156)
.|..++|+++|+|++..+..+. . .+..+++||||||++|.+.+..++..+|+++
T Consensus 29 ~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aI 108 (406)
T TIGR03680 29 TDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAL 108 (406)
T ss_pred cccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEE
Confidence 5788999999999998755432 1 1467999999999999999999999999999
Q ss_pred EEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEE
Q psy10355 59 LVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMP 138 (156)
Q Consensus 59 lvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 138 (156)
+|+|++++.. ..++.+++..+...+++++++++||+|+..... ..+..+++..+++.... .++++++
T Consensus 109 lVVDa~~g~~------~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~----~~~~~~~i~~~l~~~~~---~~~~ii~ 175 (406)
T TIGR03680 109 LVIAANEPCP------QPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEK----ALENYEEIKEFVKGTVA---ENAPIIP 175 (406)
T ss_pred EEEECCCCcc------ccchHHHHHHHHHcCCCeEEEEEEccccCCHHH----HHHHHHHHHhhhhhccc---CCCeEEE
Confidence 9999987641 256778888777778776899999999864221 12222334444333211 2579999
Q ss_pred eecccCCCCccCC
Q psy10355 139 CSGELEKNPLLLG 151 (156)
Q Consensus 139 ~Sa~~g~gi~~l~ 151 (156)
+||++|+|++.|.
T Consensus 176 vSA~~g~gi~~L~ 188 (406)
T TIGR03680 176 VSALHNANIDALL 188 (406)
T ss_pred EECCCCCChHHHH
Confidence 9999999997753
No 43
>PRK10218 GTP-binding protein; Provisional
Probab=99.84 E-value=8.9e-20 Score=147.86 Aligned_cols=130 Identities=23% Similarity=0.224 Sum_probs=106.1
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+|..++|+++|+|+......+.+++.++++||||||.+|...+..+++.+|++++|+|+.++. ..++..++..
T Consensus 43 ~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~-------~~qt~~~l~~ 115 (607)
T PRK10218 43 MDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGP-------MPQTRFVTKK 115 (607)
T ss_pred eccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCc-------cHHHHHHHHH
Confidence 688899999999999999999999999999999999999999999999999999999999886 4678888888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCC-CCCCeEEEeecccCCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNA-AKDLSFMPCSGELEKNP 147 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~Sa~~g~gi 147 (156)
+...++| .++++||+|+..+. ..+..+++...+..++... ...+|++++||++|.|.
T Consensus 116 a~~~gip-~IVviNKiD~~~a~-----~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~ 173 (607)
T PRK10218 116 AFAYGLK-PIVVINKVDRPGAR-----PDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAG 173 (607)
T ss_pred HHHcCCC-EEEEEECcCCCCCc-----hhHHHHHHHHHHhccCccccccCCCEEEeEhhcCccc
Confidence 8888999 68999999986442 2333344444443333321 13589999999999863
No 44
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=3.8e-20 Score=144.70 Aligned_cols=121 Identities=32% Similarity=0.450 Sum_probs=101.0
Q ss_pred hcCceeeeeeEEEEeC---CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC
Q psy10355 13 EKGKTVEVGRAYFETD---RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
.-|+|..+--+.+.++ ...++|+|||||+-|..++.+...-+|+++||||+.+|. .+|+.+.+.+++..+
T Consensus 35 aGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv-------~pQTiEAI~hak~a~ 107 (509)
T COG0532 35 AGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGV-------MPQTIEAINHAKAAG 107 (509)
T ss_pred CCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCc-------chhHHHHHHHHHHCC
Confidence 4589999999999884 478999999999999999999999999999999999999 499999999999999
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCC---CCCeEEEeecccCCCCccC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA---KDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~Sa~~g~gi~~l 150 (156)
.| +|+++||+|++..+.... ..++ .+.|+.++ ....++|+||++|+|+++|
T Consensus 108 vP-~iVAiNKiDk~~~np~~v-----~~el----~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eL 161 (509)
T COG0532 108 VP-IVVAINKIDKPEANPDKV-----KQEL----QEYGLVPEEWGGDVIFVPVSAKTGEGIDEL 161 (509)
T ss_pred CC-EEEEEecccCCCCCHHHH-----HHHH----HHcCCCHhhcCCceEEEEeeccCCCCHHHH
Confidence 99 999999999886544332 2222 23344332 3578999999999999876
No 45
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.83 E-value=1.3e-19 Score=139.61 Aligned_cols=133 Identities=25% Similarity=0.311 Sum_probs=112.5
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|.-..|+|||+|+-.+-..+.|++..++|+|||||-+|....+..+.-.|+++++||+.+|.+ +|+.-.+.
T Consensus 42 vMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpM-------PQTrFVlk 114 (603)
T COG1217 42 VMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-------PQTRFVLK 114 (603)
T ss_pred hcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCC-------CchhhhHH
Confidence 36778899999999999999999999999999999999999999999999999999999999994 89998888
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCC-CCCeEEEeecccCCCCcc
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA-KDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~Sa~~g~gi~~ 149 (156)
-+...|.++ |+|+||+|++.+ +.++..++..+++-.++...+ -++|++..||+.|.--..
T Consensus 115 KAl~~gL~P-IVVvNKiDrp~A-----rp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~ 175 (603)
T COG1217 115 KALALGLKP-IVVINKIDRPDA-----RPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLD 175 (603)
T ss_pred HHHHcCCCc-EEEEeCCCCCCC-----CHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccC
Confidence 888899985 889999998754 334555566666666665432 378999999999875333
No 46
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.82 E-value=1.2e-19 Score=141.87 Aligned_cols=134 Identities=28% Similarity=0.338 Sum_probs=98.2
Q ss_pred ccccHHHhhcCceeeeeeEEEEeC--------------------------CeEEEEEeCCCCcChHHHHHhhhhcCCEEE
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETD--------------------------RKHFTILDAPGHKSFVPNMIGGTAQADLAV 58 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~--------------------------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~i 58 (156)
.|..++|+++|+|++.....+.+. .+.++|||||||++|...+..++..+|+++
T Consensus 34 ~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~l 113 (411)
T PRK04000 34 TDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAI 113 (411)
T ss_pred cccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEE
Confidence 578899999999999876443321 368999999999999999999999999999
Q ss_pred EEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEE
Q psy10355 59 LVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMP 138 (156)
Q Consensus 59 lvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 138 (156)
+|+|++.+.. ..++.+++..+...+++++++++||+|+.... ......+++..+++.... .+.++++
T Consensus 114 lVVDa~~~~~------~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~----~~~~~~~~i~~~l~~~~~---~~~~ii~ 180 (411)
T PRK04000 114 LVIAANEPCP------QPQTKEHLMALDIIGIKNIVIVQNKIDLVSKE----RALENYEQIKEFVKGTVA---ENAPIIP 180 (411)
T ss_pred EEEECCCCCC------ChhHHHHHHHHHHcCCCcEEEEEEeeccccch----hHHHHHHHHHHHhccccC---CCCeEEE
Confidence 9999987641 25566777777777776589999999986321 122222334444332211 2578999
Q ss_pred eecccCCCCccCC
Q psy10355 139 CSGELEKNPLLLG 151 (156)
Q Consensus 139 ~Sa~~g~gi~~l~ 151 (156)
+||++|+|++.|.
T Consensus 181 vSA~~g~gI~~L~ 193 (411)
T PRK04000 181 VSALHKVNIDALI 193 (411)
T ss_pred EECCCCcCHHHHH
Confidence 9999999997754
No 47
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.5e-19 Score=147.76 Aligned_cols=99 Identities=25% Similarity=0.319 Sum_probs=92.5
Q ss_pred cCccccHHHhhcCceeeeeeEEEEeCC-eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 3 GQGLWLRQKREKGKTVEVGRAYFETDR-KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 3 ~~~~~~~~e~~~g~t~~~~~~~~~~~~-~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
.++||.++|++||+|+......+.|.+ +.+++||||||-+|...+.++++.+|++++|+|+.+|. .+|++..
T Consensus 48 ~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV-------~~QTEtv 120 (697)
T COG0480 48 ATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGV-------EPQTETV 120 (697)
T ss_pred ccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCe-------eecHHHH
Confidence 478999999999999999999999996 99999999999999999999999999999999999998 5999999
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCCcchhH
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPTVMWSE 109 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~~~~~~ 109 (156)
|+++...++| .++++||||+..++...
T Consensus 121 ~rqa~~~~vp-~i~fiNKmDR~~a~~~~ 147 (697)
T COG0480 121 WRQADKYGVP-RILFVNKMDRLGADFYL 147 (697)
T ss_pred HHHHhhcCCC-eEEEEECccccccChhh
Confidence 9999999999 59999999998765433
No 48
>KOG0084|consensus
Probab=99.82 E-value=1e-19 Score=125.97 Aligned_cols=129 Identities=15% Similarity=0.082 Sum_probs=102.4
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
.+.++++....+.++.+...++.++ .++.+|||+|+++|+..+.++|++|+++|+|+|.+. +.+|....+|...+
T Consensus 31 ~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~---~~SF~~v~~Wi~Ei 107 (205)
T KOG0084|consen 31 DDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITK---QESFNNVKRWIQEI 107 (205)
T ss_pred cCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEccc---HHHhhhHHHHHHHh
Confidence 3667788888888888888888766 469999999999999999999999999999999998 67888888898888
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCe-EEEeecccCCCCcc
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLS-FMPCSGELEKNPLL 149 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~Sa~~g~gi~~ 149 (156)
......++| .++|+||+|+....... -++...+...+ +++ ++++||+.+.|++.
T Consensus 108 ~~~~~~~v~-~lLVGNK~Dl~~~~~v~------~~~a~~fa~~~------~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 108 DRYASENVP-KLLVGNKCDLTEKRVVS------TEEAQEFADEL------GIPIFLETSAKDSTNVED 162 (205)
T ss_pred hhhccCCCC-eEEEeeccccHhheecC------HHHHHHHHHhc------CCcceeecccCCccCHHH
Confidence 777777888 69999999985321111 11223344444 456 99999999998875
No 49
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.81 E-value=9.8e-19 Score=122.60 Aligned_cols=135 Identities=32% Similarity=0.440 Sum_probs=103.1
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.++...++++|+|.......+.+.+..+.+|||||+.++...+..+++.+|++++|+|+..+. .....+.+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------~~~~~~~~~~ 109 (189)
T cd00881 37 LDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGV-------QPQTREHLRI 109 (189)
T ss_pred ccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCC-------cHHHHHHHHH
Confidence 456678899999999999999999999999999999999999999999999999999998765 2445555566
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCC--------CCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFN--------AAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...+.| +++++||+|+.. ........+.+...++..+.. .....+++++||++|.|++++.
T Consensus 110 ~~~~~~~-i~iv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~ 179 (189)
T cd00881 110 AREGGLP-IIVAINKIDRVG----EEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELL 179 (189)
T ss_pred HHHCCCC-eEEEEECCCCcc----hhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHH
Confidence 6666778 899999999863 122333344454444443320 0135789999999999998764
No 50
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.80 E-value=2.3e-18 Score=125.72 Aligned_cols=104 Identities=28% Similarity=0.397 Sum_probs=88.8
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|+.++|+++|+|+......+.+++.++++|||||+.+|...+..+++.+|++++|+|+.++. ..+....+..
T Consensus 39 ~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~-------~~~~~~~~~~ 111 (237)
T cd04168 39 TDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGV-------QAQTRILWRL 111 (237)
T ss_pred CCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCC-------CHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999876 3567777788
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHH
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKD 117 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~ 117 (156)
+...++| +++++||+|+..++. ...++++++
T Consensus 112 ~~~~~~P-~iivvNK~D~~~a~~-~~~~~~i~~ 142 (237)
T cd04168 112 LRKLNIP-TIIFVNKIDRAGADL-EKVYQEIKE 142 (237)
T ss_pred HHHcCCC-EEEEEECccccCCCH-HHHHHHHHH
Confidence 8788999 799999999875543 223444443
No 51
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.80 E-value=1.4e-18 Score=143.93 Aligned_cols=123 Identities=33% Similarity=0.419 Sum_probs=98.3
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCC
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVK 91 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (156)
..+|+|.......+.+++..++|||||||.+|..++..+++.+|++|+|+|++++. .+++.+++.++...++|
T Consensus 319 e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv-------~~qT~e~i~~a~~~~vP 391 (787)
T PRK05306 319 EAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGV-------MPQTIEAINHAKAAGVP 391 (787)
T ss_pred ccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCC-------CHhHHHHHHHHHhcCCc
Confidence 35789999988899999999999999999999999999999999999999999887 47888899988888999
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHH---HHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILP---YLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|+++||+|+...+. ..+..++.. +.+.++ ..++++++||++|+|++.|.
T Consensus 392 -iIVviNKiDl~~a~~-----e~V~~eL~~~~~~~e~~g----~~vp~vpvSAktG~GI~eLl 444 (787)
T PRK05306 392 -IIVAINKIDKPGANP-----DRVKQELSEYGLVPEEWG----GDTIFVPVSAKTGEGIDELL 444 (787)
T ss_pred -EEEEEECccccccCH-----HHHHHHHHHhcccHHHhC----CCceEEEEeCCCCCCchHHH
Confidence 899999999864321 222222221 111111 24789999999999998864
No 52
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.79 E-value=2.3e-18 Score=139.46 Aligned_cols=124 Identities=31% Similarity=0.389 Sum_probs=96.0
Q ss_pred HhhcCceeeeeeEEEEeCCe-EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC
Q psy10355 11 KREKGKTVEVGRAYFETDRK-HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~-~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
...+|+|.+.....+.+++. .++|||||||++|...+..++..+|++++|+|++++. .+++.+.+..+...+
T Consensus 115 ~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv-------~~qT~e~i~~~~~~~ 187 (587)
T TIGR00487 115 GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGV-------MPQTIEAISHAKAAN 187 (587)
T ss_pred ccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCC-------CHhHHHHHHHHHHcC
Confidence 34568999988888888655 8999999999999999999999999999999999887 478888888888889
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCC---CCCeEEEeecccCCCCccCC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA---KDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+| +++++||+|+...+. +++.+.+. ..++.+. ...+++++||++|+|+++|.
T Consensus 188 vP-iIVviNKiDl~~~~~-----e~v~~~L~----~~g~~~~~~~~~~~~v~iSAktGeGI~eLl 242 (587)
T TIGR00487 188 VP-IIVAINKIDKPEANP-----DRVKQELS----EYGLVPEDWGGDTIFVPVSALTGDGIDELL 242 (587)
T ss_pred CC-EEEEEECcccccCCH-----HHHHHHHH----HhhhhHHhcCCCceEEEEECCCCCChHHHH
Confidence 99 899999999864322 22222222 1221110 13689999999999998764
No 53
>PRK00007 elongation factor G; Reviewed
Probab=99.79 E-value=1.8e-18 Score=142.99 Aligned_cols=124 Identities=24% Similarity=0.279 Sum_probs=101.8
Q ss_pred cCccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 3 GQGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 3 ~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
..+|+.++|+++|+|++.....+.+.+++++++|||||.+|...+..+++.+|++++|+|+..|. ..++..++
T Consensus 48 ~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~-------~~qt~~~~ 120 (693)
T PRK00007 48 ATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGV-------EPQSETVW 120 (693)
T ss_pred ccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCc-------chhhHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999987 57889999
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELE 144 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g 144 (156)
..+...++| .|+++||+|+...+ +....+++...+ ++.. -...+|+||..+
T Consensus 121 ~~~~~~~~p-~iv~vNK~D~~~~~-----~~~~~~~i~~~l---~~~~--~~~~ipisa~~~ 171 (693)
T PRK00007 121 RQADKYKVP-RIAFVNKMDRTGAD-----FYRVVEQIKDRL---GANP--VPIQLPIGAEDD 171 (693)
T ss_pred HHHHHcCCC-EEEEEECCCCCCCC-----HHHHHHHHHHHh---CCCe--eeEEecCccCCc
Confidence 999999999 68999999987543 222333333322 3211 235789998877
No 54
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.78 E-value=1e-17 Score=124.28 Aligned_cols=94 Identities=29% Similarity=0.472 Sum_probs=83.4
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..|+.++|+++|+|+......+++.+.++++|||||+.+|...+..+++.+|++|+|+|++.+. ..+....+.
T Consensus 45 ~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~-------~~~~~~i~~ 117 (267)
T cd04169 45 TSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGV-------EPQTRKLFE 117 (267)
T ss_pred cCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCc-------cHHHHHHHH
Confidence 3688999999999999999999999999999999999999998999999999999999998875 345566677
Q ss_pred HHHHcCCCcEEEEEeCCCCCCc
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~ 105 (156)
.+...++| +++++||+|+..+
T Consensus 118 ~~~~~~~P-~iivvNK~D~~~a 138 (267)
T cd04169 118 VCRLRGIP-IITFINKLDREGR 138 (267)
T ss_pred HHHhcCCC-EEEEEECCccCCC
Confidence 77777899 7999999998654
No 55
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.78 E-value=1.5e-17 Score=119.74 Aligned_cols=136 Identities=18% Similarity=0.215 Sum_probs=102.1
Q ss_pred ccccHHHhhcCceeeeeeEEEEeC-----CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETD-----RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~-----~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
.|..++|+++|+|+......+.+. ...+++|||||+.+|...+..+++.+|++++|+|+..+. .....
T Consensus 41 ~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~-------~~~~~ 113 (213)
T cd04167 41 TDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGV-------TSNTE 113 (213)
T ss_pred CCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCC-------CHHHH
Confidence 577789999999999888887654 378999999999999999999999999999999998765 23444
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCc------chhHHHHHHHHHHHHHHHHHcCCCCC-----CCCeEEEeecccCCCCc
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTV------MWSEARYNECKDKILPYLKKLGFNAA-----KDLSFMPCSGELEKNPL 148 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~Sa~~g~gi~ 148 (156)
..+..+...+.| +++++||+|+... ......+.++.+++..+++..++.+. .+.+++..||+.|-+..
T Consensus 114 ~~~~~~~~~~~p-~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 114 RLIRHAILEGLP-IVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHHcCCC-EEEEEECcccCcccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 555555566778 8999999997521 12224566666777777777765321 13457788999887653
No 56
>PRK12739 elongation factor G; Reviewed
Probab=99.78 E-value=2.9e-18 Score=141.76 Aligned_cols=125 Identities=26% Similarity=0.293 Sum_probs=101.3
Q ss_pred cCccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 3 GQGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 3 ~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
..+|+.++|+++|+|++.....+.+++++++++|||||.+|...+..+++.+|++++|+|+.++. ..++..++
T Consensus 46 ~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~-------~~qt~~i~ 118 (691)
T PRK12739 46 ATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGV-------EPQSETVW 118 (691)
T ss_pred cccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCC-------CHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999887 47788888
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEK 145 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~ 145 (156)
..+...++| +|+++||+|+.... +..+.+++...+ ++.. ....+|+|+..+.
T Consensus 119 ~~~~~~~~p-~iv~iNK~D~~~~~-----~~~~~~~i~~~l---~~~~--~~~~iPis~~~~f 170 (691)
T PRK12739 119 RQADKYGVP-RIVFVNKMDRIGAD-----FFRSVEQIKDRL---GANA--VPIQLPIGAEDDF 170 (691)
T ss_pred HHHHHcCCC-EEEEEECCCCCCCC-----HHHHHHHHHHHh---CCCc--eeEEecccccccc
Confidence 988888999 68999999987532 233334444333 2211 1245788887654
No 57
>KOG0092|consensus
Probab=99.78 E-value=1.4e-19 Score=124.86 Aligned_cols=124 Identities=15% Similarity=0.193 Sum_probs=89.3
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (156)
|...|..+-.+...+.....+|.||||+|+++|......|||+|+++|+|+|.++ ..+|.....|...+......++
T Consensus 35 e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~---~~SF~~aK~WvkeL~~~~~~~~ 111 (200)
T KOG0092|consen 35 EPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITD---EESFEKAKNWVKELQRQASPNI 111 (200)
T ss_pred ccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEeccc---HHHHHHHHHHHHHHHhhCCCCe
Confidence 4445555555555555555889999999999999999999999999999999988 5566666666666654444444
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
. +-+|+||+||... ....+ ++...+.+.. +..++++||++|.|++++
T Consensus 112 v-ialvGNK~DL~~~--R~V~~----~ea~~yAe~~------gll~~ETSAKTg~Nv~~i 158 (200)
T KOG0092|consen 112 V-IALVGNKADLLER--REVEF----EEAQAYAESQ------GLLFFETSAKTGENVNEI 158 (200)
T ss_pred E-EEEecchhhhhhc--ccccH----HHHHHHHHhc------CCEEEEEecccccCHHHH
Confidence 4 5669999998641 11122 2344445544 468999999999999874
No 58
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.78 E-value=1.2e-18 Score=124.46 Aligned_cols=128 Identities=16% Similarity=0.094 Sum_probs=85.5
Q ss_pred HHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH
Q psy10355 9 RQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK 86 (156)
Q Consensus 9 ~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
..+....++.+.....+..++ ..+.+|||||+++|...+..+++++|++|+|+|.++. .+|+....|...+....
T Consensus 26 ~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~---~Sf~~l~~w~~~i~~~~ 102 (202)
T cd04120 26 CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKK---ETFDDLPKWMKMIDKYA 102 (202)
T ss_pred CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCH---HHHHHHHHHHHHHHHhC
Confidence 344445555555555566665 6789999999999999999999999999999999884 33433334444333322
Q ss_pred HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 87 TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 87 ~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+.| +++|+||+|+..... +. .++...+.+.. .+++++++||++|+||+++-
T Consensus 103 ~~~~p-iilVgNK~DL~~~~~----v~--~~~~~~~a~~~-----~~~~~~etSAktg~gV~e~F 155 (202)
T cd04120 103 SEDAE-LLLVGNKLDCETDRE----IS--RQQGEKFAQQI-----TGMRFCEASAKDNFNVDEIF 155 (202)
T ss_pred CCCCc-EEEEEECcccccccc----cC--HHHHHHHHHhc-----CCCEEEEecCCCCCCHHHHH
Confidence 34577 899999999853111 00 11122223322 14689999999999998753
No 59
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.78 E-value=6.1e-18 Score=139.88 Aligned_cols=125 Identities=25% Similarity=0.280 Sum_probs=100.4
Q ss_pred cCccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 3 GQGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 3 ~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
.++|+.+.|+++|+|++.....+.+++.++++|||||+.+|...+..+++.+|++++|+|+.++. ..++..++
T Consensus 48 ~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~-------~~~~~~~~ 120 (689)
T TIGR00484 48 ATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGV-------QPQSETVW 120 (689)
T ss_pred cccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCC-------ChhHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999886 46677888
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEK 145 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~ 145 (156)
..+...++| +++++||+|+..+. +....+++...+ ++.. ...++|+||..+.
T Consensus 121 ~~~~~~~~p-~ivviNK~D~~~~~-----~~~~~~~i~~~l---~~~~--~~~~ipis~~~~~ 172 (689)
T TIGR00484 121 RQANRYEVP-RIAFVNKMDKTGAN-----FLRVVNQIKQRL---GANA--VPIQLPIGAEDNF 172 (689)
T ss_pred HHHHHcCCC-EEEEEECCCCCCCC-----HHHHHHHHHHHh---CCCc--eeEEeccccCCCc
Confidence 888888999 78999999987542 223333343332 3321 1247899998774
No 60
>KOG1145|consensus
Probab=99.77 E-value=2.7e-18 Score=134.46 Aligned_cols=121 Identities=35% Similarity=0.450 Sum_probs=100.0
Q ss_pred hcCceeeeeeEEEEe-CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCC
Q psy10355 13 EKGKTVEVGRAYFET-DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVK 91 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (156)
--|+|..+.-+.+.. ++..++|+|||||.-|..++.++...+|++++||.+.+|. .+|+.+.+.+++..++|
T Consensus 183 ~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGV-------mpQT~EaIkhAk~A~Vp 255 (683)
T KOG1145|consen 183 AGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGV-------MPQTLEAIKHAKSANVP 255 (683)
T ss_pred cCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCc-------cHhHHHHHHHHHhcCCC
Confidence 358888887777765 6688999999999999999999999999999999999999 49999999999999999
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHH---HHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILP---YLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+|+++||+|.++++... .++++.. .++.+| .+++++|+||++|+|++.|
T Consensus 256 -iVvAinKiDkp~a~pek-----v~~eL~~~gi~~E~~G----GdVQvipiSAl~g~nl~~L 307 (683)
T KOG1145|consen 256 -IVVAINKIDKPGANPEK-----VKRELLSQGIVVEDLG----GDVQVIPISALTGENLDLL 307 (683)
T ss_pred -EEEEEeccCCCCCCHHH-----HHHHHHHcCccHHHcC----CceeEEEeecccCCChHHH
Confidence 99999999988664433 3333322 133443 3689999999999999876
No 61
>KOG0098|consensus
Probab=99.76 E-value=6.1e-19 Score=121.18 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=91.6
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEE
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLV 94 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (156)
|+........+.....++++|||+|++.|.+.+.++|+.+.++|||+|.+. ..+|.-...|.+-+++....+.. ++
T Consensus 40 Gvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~---r~sF~hL~~wL~D~rq~~~~Nmv-Im 115 (216)
T KOG0098|consen 40 GVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITR---RESFNHLTSWLEDARQHSNENMV-IM 115 (216)
T ss_pred eeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccc---hhhHHHHHHHHHHHHHhcCCCcE-EE
Confidence 444444444445455679999999999999999999999999999999987 44555556666666655556777 89
Q ss_pred EEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 95 VLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 95 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
++.||+||... .+--+++...+.+++|+ .+.++||++++|+++.
T Consensus 116 LiGNKsDL~~r------R~Vs~EEGeaFA~ehgL------ifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 116 LIGNKSDLEAR------REVSKEEGEAFAREHGL------IFMETSAKTAENVEEA 159 (216)
T ss_pred EEcchhhhhcc------ccccHHHHHHHHHHcCc------eeehhhhhhhhhHHHH
Confidence 99999998632 13335667788888764 7889999999999874
No 62
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=3.3e-18 Score=126.69 Aligned_cols=133 Identities=28% Similarity=0.376 Sum_probs=107.9
Q ss_pred ccccHHHhhcCceeeeeeEEEEe------C--------------------CeEEEEEeCCCCcChHHHHHhhhhcCCEEE
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFET------D--------------------RKHFTILDAPGHKSFVPNMIGGTAQADLAV 58 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~------~--------------------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~i 58 (156)
+|..++|-+||+|+...+..... . -+.+.|+|+|||+-+...+.+...-.|+++
T Consensus 35 T~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAl 114 (415)
T COG5257 35 TDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGAL 114 (415)
T ss_pred eechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceE
Confidence 46678999999999876654321 0 067999999999999999999999999999
Q ss_pred EEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEE
Q psy10355 59 LVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMP 138 (156)
Q Consensus 59 lvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 138 (156)
+|+++++..- ++|+.+++..+.-.|+.++|++.||+|+.. .++..+--++++.|++..-. ++.|+||
T Consensus 115 LvIaANEpcP------QPQT~EHl~AleIigik~iiIvQNKIDlV~----~E~AlE~y~qIk~FvkGt~A---e~aPIIP 181 (415)
T COG5257 115 LVIAANEPCP------QPQTREHLMALEIIGIKNIIIVQNKIDLVS----RERALENYEQIKEFVKGTVA---ENAPIIP 181 (415)
T ss_pred EEEecCCCCC------CCchHHHHHHHhhhccceEEEEecccceec----HHHHHHHHHHHHHHhccccc---CCCceee
Confidence 9999987652 799999999999999998999999999984 33344444556666665532 5789999
Q ss_pred eecccCCCCccC
Q psy10355 139 CSGELEKNPLLL 150 (156)
Q Consensus 139 ~Sa~~g~gi~~l 150 (156)
+||.++.||+.|
T Consensus 182 iSA~~~~NIDal 193 (415)
T COG5257 182 ISAQHKANIDAL 193 (415)
T ss_pred ehhhhccCHHHH
Confidence 999999999876
No 63
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.76 E-value=1.3e-18 Score=118.91 Aligned_cols=116 Identities=21% Similarity=0.259 Sum_probs=82.3
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChH------HHHHhhh--hcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFV------PNMIGGT--AQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~------~~~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
-+|+|++...+.+.+.+..+.++|+||..++. +.+..++ ...|++++|+|++.. .+......+
T Consensus 30 ~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l---------~r~l~l~~q 100 (156)
T PF02421_consen 30 WPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL---------ERNLYLTLQ 100 (156)
T ss_dssp STTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH---------HHHHHHHHH
T ss_pred CCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH---------HHHHHHHHH
Confidence 47999999999999999999999999975542 1233333 578999999999762 455667777
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...++| +++++||+|++.......+.+.+.+.+ ++|++++||++|+|+++|+
T Consensus 101 l~e~g~P-~vvvlN~~D~a~~~g~~id~~~Ls~~L-------------g~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 101 LLELGIP-VVVVLNKMDEAERKGIEIDAEKLSERL-------------GVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp HHHTTSS-EEEEEETHHHHHHTTEEE-HHHHHHHH-------------TS-EEEEBTTTTBTHHHHH
T ss_pred HHHcCCC-EEEEEeCHHHHHHcCCEECHHHHHHHh-------------CCCEEEEEeCCCcCHHHHH
Confidence 8889999 899999999753322222233333222 4799999999999999875
No 64
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.76 E-value=7.2e-18 Score=138.78 Aligned_cols=125 Identities=30% Similarity=0.404 Sum_probs=94.7
Q ss_pred HhhcCceeeeeeEEEEe----CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH
Q psy10355 11 KREKGKTVEVGRAYFET----DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK 86 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~----~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
+..+|+|.+...+.+.+ .+..++|||||||+.|...+..+++.+|++|+|+|+.++. ..++.+.+..+.
T Consensus 272 ~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv-------~~QT~E~I~~~k 344 (742)
T CHL00189 272 KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGV-------KPQTIEAINYIQ 344 (742)
T ss_pred ccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCC-------ChhhHHHHHHHH
Confidence 34568888776666554 3588999999999999999999999999999999999887 477888888888
Q ss_pred HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHH---HHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 87 TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPY---LKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 87 ~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
..++| +|+++||+|+.... ...+.+++... ....+ ..++++++||++|+|++.|.+
T Consensus 345 ~~~iP-iIVViNKiDl~~~~-----~e~v~~eL~~~~ll~e~~g----~~vpvv~VSAktG~GIdeLle 403 (742)
T CHL00189 345 AANVP-IIVAINKIDKANAN-----TERIKQQLAKYNLIPEKWG----GDTPMIPISASQGTNIDKLLE 403 (742)
T ss_pred hcCce-EEEEEECCCccccC-----HHHHHHHHHHhccchHhhC----CCceEEEEECCCCCCHHHHHH
Confidence 88999 89999999986432 22223333221 11111 247899999999999987643
No 65
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=9.2e-18 Score=128.60 Aligned_cols=106 Identities=24% Similarity=0.360 Sum_probs=93.7
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
-||+..|++|||++-.+..+|.+.+..++++|||||++|...+.+.+.-+|.++.|+|+..|+ .+++...+..
T Consensus 56 SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGi-------E~qT~KLfeV 128 (528)
T COG4108 56 SDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGI-------EPQTLKLFEV 128 (528)
T ss_pred cHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCc-------cHHHHHHHHH
Confidence 499999999999999999999999999999999999999999999999999999999999998 5899999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHH
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKI 119 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~ 119 (156)
++..++| ++-++||+|+...+.- +.++++.+++
T Consensus 129 crlR~iP-I~TFiNKlDR~~rdP~-ELLdEiE~~L 161 (528)
T COG4108 129 CRLRDIP-IFTFINKLDREGRDPL-ELLDEIEEEL 161 (528)
T ss_pred HhhcCCc-eEEEeeccccccCChH-HHHHHHHHHh
Confidence 9999999 9999999998654332 2344544444
No 66
>KOG0078|consensus
Probab=99.75 E-value=5.1e-18 Score=118.87 Aligned_cols=119 Identities=16% Similarity=0.090 Sum_probs=88.7
Q ss_pred ceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcE
Q psy10355 16 KTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHL 93 (156)
Q Consensus 16 ~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (156)
+.++.+...++.++ ..+.+|||+|+++|...+.+|+++|+++++|+|.+. +.+|+....|...+......+++ +
T Consensus 45 iGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitn---e~Sfeni~~W~~~I~e~a~~~v~-~ 120 (207)
T KOG0078|consen 45 IGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITN---EKSFENIRNWIKNIDEHASDDVV-K 120 (207)
T ss_pred EEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccc---hHHHHHHHHHHHHHHhhCCCCCc-E
Confidence 34444444555544 569999999999999999999999999999999988 55666666677777666666888 8
Q ss_pred EEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 94 VVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 94 ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
++|+||+|+...- .--.+.-..+..++ +++|+++||++|.||++.
T Consensus 121 ~LvGNK~D~~~~R------~V~~e~ge~lA~e~------G~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 121 ILVGNKCDLEEKR------QVSKERGEALAREY------GIKFFETSAKTNFNIEEA 165 (207)
T ss_pred EEeeccccccccc------cccHHHHHHHHHHh------CCeEEEccccCCCCHHHH
Confidence 9999999985311 11122233444444 579999999999999763
No 67
>PTZ00099 rab6; Provisional
Probab=99.75 E-value=9.2e-18 Score=117.51 Aligned_cols=128 Identities=13% Similarity=0.143 Sum_probs=82.4
Q ss_pred cHHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 8 LRQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 8 ~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
+.++..+.+..+.....+..++ .++.||||||++++...+..+++++|++|+|+|.++.. +|.....+...+...
T Consensus 5 F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~---sf~~~~~w~~~i~~~ 81 (176)
T PTZ00099 5 FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQ---SFENTTKWIQDILNE 81 (176)
T ss_pred cCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHH---HHHHHHHHHHHHHHh
Confidence 4455555665555544555444 67999999999999999999999999999999998742 222222233222222
Q ss_pred HHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 86 KTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 86 ~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+.| +++|+||+|+...... ...+ .....+.. ++.++++||++|+|++++.
T Consensus 82 ~~~~~p-iilVgNK~DL~~~~~v--~~~e----~~~~~~~~------~~~~~e~SAk~g~nV~~lf 134 (176)
T PTZ00099 82 RGKDVI-IALVGNKTDLGDLRKV--TYEE----GMQKAQEY------NTMFHETSAKAGHNIKVLF 134 (176)
T ss_pred cCCCCe-EEEEEECcccccccCC--CHHH----HHHHHHHc------CCEEEEEECCCCCCHHHHH
Confidence 223466 8999999998531110 1111 22222322 3578999999999998753
No 68
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.74 E-value=6.1e-17 Score=129.88 Aligned_cols=94 Identities=26% Similarity=0.409 Sum_probs=85.3
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|+.+.|+++|+|+......+.+++..+++||||||.+|...+..+++.+|++|+|+|++.+. ..++...+..
T Consensus 54 ~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-------~~~t~~l~~~ 126 (526)
T PRK00741 54 SDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGV-------EPQTRKLMEV 126 (526)
T ss_pred CCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCC-------CHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999999999886 3667777888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcc
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
+...++| +++++||+|+..++
T Consensus 127 ~~~~~iP-iiv~iNK~D~~~a~ 147 (526)
T PRK00741 127 CRLRDTP-IFTFINKLDRDGRE 147 (526)
T ss_pred HHhcCCC-EEEEEECCcccccC
Confidence 8788999 89999999986543
No 69
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.74 E-value=4.1e-17 Score=135.64 Aligned_cols=136 Identities=19% Similarity=0.183 Sum_probs=102.1
Q ss_pred CccccHHHhhcCceeeeeeEEEEe----CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFET----DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~----~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
.+|+.++|++||+|+......+.| ++..++|+|||||.+|...+..+++.+|++|+|+|+..|. ..++.
T Consensus 57 ~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~-------~~~t~ 129 (731)
T PRK07560 57 ALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGV-------MPQTE 129 (731)
T ss_pred ecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCC-------CccHH
Confidence 479999999999999998877665 4788999999999999999999999999999999999887 47888
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcch------hHHHHHHHHHHHHHHHHHcC---------CCCCCCCeEEEeecccC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMW------SEARYNECKDKILPYLKKLG---------FNAAKDLSFMPCSGELE 144 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~~Sa~~g 144 (156)
.++..+...+.| .|+++||+|+...+. ....+....+++..++.... +.+. +-.++..||+.+
T Consensus 130 ~~~~~~~~~~~~-~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~-~~~v~~~sa~~~ 207 (731)
T PRK07560 130 TVLRQALRERVK-PVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVE-DGTVAFGSALYN 207 (731)
T ss_pred HHHHHHHHcCCC-eEEEEECchhhcccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCC-CCcEeeeecccc
Confidence 888887778888 699999999764321 12223333334444443221 1111 234667899887
Q ss_pred CCCc
Q psy10355 145 KNPL 148 (156)
Q Consensus 145 ~gi~ 148 (156)
.+..
T Consensus 208 ~~~~ 211 (731)
T PRK07560 208 WAIS 211 (731)
T ss_pred ccee
Confidence 7654
No 70
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.74 E-value=5.2e-17 Score=112.00 Aligned_cols=126 Identities=28% Similarity=0.367 Sum_probs=89.1
Q ss_pred hhcCceeeeeeEEEEeC---CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc
Q psy10355 12 REKGKTVEVGRAYFETD---RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA 88 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
..+++|.+.....+... +..+.+|||||+..+...+..+++.+|++++|+|++++. ..+..+.+..+...
T Consensus 29 ~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~-------~~~~~~~~~~~~~~ 101 (168)
T cd01887 29 EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGV-------MPQTIEAIKLAKAA 101 (168)
T ss_pred cCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCc-------cHHHHHHHHHHHHc
Confidence 44577777777777764 788999999999999888888999999999999998764 24555566666677
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCC-CCCCCCeEEEeecccCCCCccCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF-NAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++| +++++||+|+.... . ..+.+.+...... .. .....++++++||++|+|+++|.
T Consensus 102 ~~p-~ivv~NK~Dl~~~~--~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l~ 158 (168)
T cd01887 102 NVP-FIVALNKIDKPNAN--P---ERVKNELSELGLQ-GEDEWGGDVQIVPTSAKTGEGIDDLL 158 (168)
T ss_pred CCC-EEEEEEceeccccc--H---HHHHHHHHHhhcc-ccccccCcCcEEEeecccCCCHHHHH
Confidence 888 89999999976321 1 1112222221111 00 00124689999999999998764
No 71
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.73 E-value=3.9e-17 Score=137.37 Aligned_cols=92 Identities=22% Similarity=0.247 Sum_probs=84.2
Q ss_pred CccccHHHhhcCceeeeeeEEEEeC----------------CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCc
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETD----------------RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~----------------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~ 67 (156)
++|..++|+++|+|+......+.+. ++.++++|||||.+|...+..+++.+|++|+|+|+..|.
T Consensus 56 ~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv 135 (843)
T PLN00116 56 MTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135 (843)
T ss_pred eccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCC
Confidence 4799999999999999888777773 678999999999999999999999999999999999998
Q ss_pred cccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
..+++.+++++...++| +|+++||+|+.
T Consensus 136 -------~~~t~~~~~~~~~~~~p-~i~~iNK~D~~ 163 (843)
T PLN00116 136 -------CVQTETVLRQALGERIR-PVLTVNKMDRC 163 (843)
T ss_pred -------cccHHHHHHHHHHCCCC-EEEEEECCccc
Confidence 57899999999999999 79999999986
No 72
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.73 E-value=2.3e-17 Score=113.83 Aligned_cols=122 Identities=20% Similarity=0.208 Sum_probs=81.7
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH----HHcCC
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA----KTAGV 90 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 90 (156)
..|+......+.+++..+.+|||||++.+...+..+++.+|++++|+|+++.. .+ ......+..+ ...+.
T Consensus 35 ~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~---~~---~~~~~~~~~~~~~~~~~~~ 108 (167)
T cd04160 35 TPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRE---RF---EESKSALEKVLRNEALEGV 108 (167)
T ss_pred CCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHH---HH---HHHHHHHHHHHhChhhcCC
Confidence 44555556677778999999999999999999999999999999999997642 00 1111222211 12467
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
| +++++||+|+..... ..++.+.+....+..+. ..++++++||++|+|++++
T Consensus 109 p-~ilv~NK~D~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 109 P-LLILANKQDLPDALS----VEEIKEVFQDKAEEIGR---RDCLVLPVSALEGTGVREG 160 (167)
T ss_pred C-EEEEEEccccccCCC----HHHHHHHhccccccccC---CceEEEEeeCCCCcCHHHH
Confidence 8 899999999754211 22222223222222221 2468999999999999875
No 73
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=5.4e-17 Score=127.74 Aligned_cols=125 Identities=24% Similarity=0.208 Sum_probs=93.5
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChH-----------HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKSFV-----------PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~-----------~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
...+|+|.+.....+..++..+.+|||||+.++. ..+..+++.+|++++|+|++++. ..++.
T Consensus 201 ~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~-------~~~~~ 273 (429)
T TIGR03594 201 SDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGI-------TEQDL 273 (429)
T ss_pred CCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCc-------cHHHH
Confidence 3467999999888998899999999999986542 22456789999999999999876 35566
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+..+...+.| +++|+||+|+.. ......++.+.+...+... ...+++++||++|.|++++.
T Consensus 274 ~~~~~~~~~~~~-iiiv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~-----~~~~vi~~SA~~g~~v~~l~ 336 (429)
T TIGR03594 274 RIAGLILEAGKA-LVIVVNKWDLVK---DEKTREEFKKELRRKLPFL-----DFAPIVFISALTGQGVDKLL 336 (429)
T ss_pred HHHHHHHHcCCc-EEEEEECcccCC---CHHHHHHHHHHHHHhcccC-----CCCceEEEeCCCCCCHHHHH
Confidence 667777777888 899999999862 2233444455554433322 24689999999999998764
No 74
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.72 E-value=1.2e-16 Score=128.30 Aligned_cols=94 Identities=21% Similarity=0.405 Sum_probs=84.1
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..|+.+.|+++|+|+......+.+++.++++||||||.+|...+..+++.+|++|+|+|+..+. ..+....+.
T Consensus 54 ~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-------~~~t~~l~~ 126 (527)
T TIGR00503 54 KSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-------ETRTRKLME 126 (527)
T ss_pred cCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCC-------CHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999998876 356677777
Q ss_pred HHHHcCCCcEEEEEeCCCCCCc
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~ 105 (156)
.+...++| +++++||+|+...
T Consensus 127 ~~~~~~~P-iivviNKiD~~~~ 147 (527)
T TIGR00503 127 VTRLRDTP-IFTFMNKLDRDIR 147 (527)
T ss_pred HHHhcCCC-EEEEEECccccCC
Confidence 77777888 8999999998644
No 75
>PTZ00416 elongation factor 2; Provisional
Probab=99.72 E-value=1.1e-16 Score=134.56 Aligned_cols=92 Identities=22% Similarity=0.264 Sum_probs=83.8
Q ss_pred CccccHHHhhcCceeeeeeEEEEeC----------CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccC
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETD----------RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFD 73 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~----------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~ 73 (156)
.+|..++|+++|+|+......+.+. ++.++|+|||||.+|...+..+++.+|++|+|+|+..|.
T Consensus 56 ~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~------ 129 (836)
T PTZ00416 56 FTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGV------ 129 (836)
T ss_pred ecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCc------
Confidence 4789999999999999887777775 678999999999999999999999999999999999988
Q ss_pred CCcchHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 74 RGGQTREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
..++..++..+...++| +|+++||+|+.
T Consensus 130 -~~~t~~~~~~~~~~~~p-~iv~iNK~D~~ 157 (836)
T PTZ00416 130 -CVQTETVLRQALQERIR-PVLFINKVDRA 157 (836)
T ss_pred -CccHHHHHHHHHHcCCC-EEEEEEChhhh
Confidence 57888999999888988 79999999986
No 76
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.72 E-value=1.3e-16 Score=135.13 Aligned_cols=134 Identities=28% Similarity=0.380 Sum_probs=98.3
Q ss_pred HHHhhcCceeeeeeEEEEeCC------------------eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCcccc
Q psy10355 9 RQKREKGKTVEVGRAYFETDR------------------KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFET 70 (156)
Q Consensus 9 ~~e~~~g~t~~~~~~~~~~~~------------------~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~ 70 (156)
.++-..|+|..+....+.++. ..++|||||||+.|......++..+|++++|+|++++.
T Consensus 487 ~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi--- 563 (1049)
T PRK14845 487 AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGF--- 563 (1049)
T ss_pred ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccC---
Confidence 445577999998887776542 12899999999999988888889999999999999876
Q ss_pred ccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh---------------HHHHHHHHHHHHH---HHHHcCCCC--
Q psy10355 71 GFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS---------------EARYNECKDKILP---YLKKLGFNA-- 130 (156)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~---------------~~~~~~~~~~~~~---~~~~~~~~~-- 130 (156)
.+++.+.+..+...++| +++++||+|+... |. +....++...+.. .+.+.|+..
T Consensus 564 ----~~qT~e~I~~lk~~~iP-iIVViNKiDL~~~-~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~ 637 (1049)
T PRK14845 564 ----KPQTIEAINILRQYKTP-FVVAANKIDLIPG-WNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADR 637 (1049)
T ss_pred ----CHhHHHHHHHHHHcCCC-EEEEEECCCCccc-cccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhh
Confidence 47788888888888888 8999999998521 11 1112232222222 244555532
Q ss_pred -------CCCCeEEEeecccCCCCccCC
Q psy10355 131 -------AKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 131 -------~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...++++|+||++|+||+.|.
T Consensus 638 ~~~~~d~~~~v~iVpVSA~tGeGId~Ll 665 (1049)
T PRK14845 638 FDRVQDFTRTVAIVPVSAKTGEGIPELL 665 (1049)
T ss_pred hhhhhhcCCCceEEEEEcCCCCCHHHHH
Confidence 135799999999999999875
No 77
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.72 E-value=1.2e-16 Score=129.47 Aligned_cols=112 Identities=27% Similarity=0.377 Sum_probs=81.3
Q ss_pred EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhH-
Q psy10355 31 HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSE- 109 (156)
Q Consensus 31 ~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~- 109 (156)
.+.|||||||+.|...+..+++.+|++++|+|++++. ..++.+.+..+...++| +++++||+|+.. .+..
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~-------~~qt~e~i~~l~~~~vp-iIVv~NK~Dl~~-~~~~~ 140 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGF-------KPQTQEALNILRMYKTP-FVVAANKIDRIP-GWRSH 140 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCC-------CHhHHHHHHHHHHcCCC-EEEEEECCCccc-hhhhc
Confidence 4899999999999999999999999999999999876 46777777777778899 899999999853 1110
Q ss_pred ----------HHHHHHHH-------HHHHHHHHcCCCCC---------CCCeEEEeecccCCCCccCC
Q psy10355 110 ----------ARYNECKD-------KILPYLKKLGFNAA---------KDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 110 ----------~~~~~~~~-------~~~~~~~~~~~~~~---------~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..-..++. .+...+...|+..+ .+.+++|+||++|+|+++|.
T Consensus 141 ~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl 208 (590)
T TIGR00491 141 EGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELL 208 (590)
T ss_pred cCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHH
Confidence 00001111 11122344444321 25799999999999999874
No 78
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.72 E-value=1.6e-16 Score=122.75 Aligned_cols=124 Identities=27% Similarity=0.293 Sum_probs=105.0
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcCh-----------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSF-----------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~-----------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
..|+|++.....+++++.++.++||+|.++- ...+..++..+|++++|+|++++. ..++..+
T Consensus 209 ~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~-------~~qD~~i 281 (444)
T COG1160 209 IAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGI-------SEQDLRI 281 (444)
T ss_pred CCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCc-------hHHHHHH
Confidence 7899999999999999999999999998653 345778889999999999999998 4788999
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..++...|.+ +|+++||+|+... +....+..++++...+..+++ .|++++||++|.|++.|.
T Consensus 282 a~~i~~~g~~-~vIvvNKWDl~~~--~~~~~~~~k~~i~~~l~~l~~-----a~i~~iSA~~~~~i~~l~ 343 (444)
T COG1160 282 AGLIEEAGRG-IVIVVNKWDLVEE--DEATMEEFKKKLRRKLPFLDF-----APIVFISALTGQGLDKLF 343 (444)
T ss_pred HHHHHHcCCC-eEEEEEccccCCc--hhhHHHHHHHHHHHHhccccC-----CeEEEEEecCCCChHHHH
Confidence 9999999999 7999999997643 334567777778777776654 588999999999998763
No 79
>KOG0094|consensus
Probab=99.71 E-value=3.9e-17 Score=113.10 Aligned_cols=118 Identities=16% Similarity=0.174 Sum_probs=80.9
Q ss_pred eeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEE
Q psy10355 18 VEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLI 97 (156)
Q Consensus 18 ~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~ 97 (156)
+......++...+.+.+|||+|+++|.....+|++++.++|+|+|.++. .+|.....|.+-+...+...-.-+++|+
T Consensus 59 Flskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~---~Sfe~t~kWi~dv~~e~gs~~viI~LVG 135 (221)
T KOG0094|consen 59 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDR---NSFENTSKWIEDVRRERGSDDVIIFLVG 135 (221)
T ss_pred EEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEecccc---chHHHHHHHHHHHHhccCCCceEEEEEc
Confidence 3333333333446799999999999999999999999999999999873 3454445555554443333223378899
Q ss_pred eCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 98 NKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 98 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
||.||... ..+. .++-....+++ +..|+++||+.|+|+.+|
T Consensus 136 nKtDL~dk----rqvs--~eEg~~kAkel------~a~f~etsak~g~NVk~l 176 (221)
T KOG0094|consen 136 NKTDLSDK----RQVS--IEEGERKAKEL------NAEFIETSAKAGENVKQL 176 (221)
T ss_pred ccccccch----hhhh--HHHHHHHHHHh------CcEEEEecccCCCCHHHH
Confidence 99998742 2221 22223334444 468999999999999765
No 80
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.71 E-value=1.2e-16 Score=109.06 Aligned_cols=117 Identities=23% Similarity=0.211 Sum_probs=81.9
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHH------HHHhhh--hcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVP------NMIGGT--AQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~------~~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..+|+|.+.....+.+++..+.+|||||+.++.. .+..++ ..+|++++|+|+.+.. .....+.
T Consensus 25 ~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~---------~~~~~~~ 95 (158)
T cd01879 25 NWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLE---------RNLYLTL 95 (158)
T ss_pred CCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcch---------hHHHHHH
Confidence 3578899988888999889999999999987653 234444 4899999999997632 2233344
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+...+.| +++++||+|+....... .....+.+.. +.+++++||++|.|+..+.
T Consensus 96 ~~~~~~~~-~iiv~NK~Dl~~~~~~~-------~~~~~~~~~~------~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 96 QLLELGLP-VVVALNMIDEAEKRGIK-------IDLDKLSELL------GVPVVPTSARKGEGIDELK 149 (158)
T ss_pred HHHHcCCC-EEEEEehhhhcccccch-------hhHHHHHHhh------CCCeEEEEccCCCCHHHHH
Confidence 45556788 89999999986432111 1111222222 3589999999999988754
No 81
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.71 E-value=4.9e-17 Score=112.18 Aligned_cols=125 Identities=16% Similarity=0.087 Sum_probs=82.5
Q ss_pred hhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC
Q psy10355 12 REKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
..+.++.+.....+.+++ ..+.+|||||++++...+...++.+|++++|+|+++.. +|.....+...+......+
T Consensus 32 ~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~---s~~~~~~~~~~i~~~~~~~ 108 (165)
T cd01864 32 QGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRS---SFESVPHWIEEVEKYGASN 108 (165)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHH---HHHhHHHHHHHHHHhCCCC
Confidence 333444445555566666 57899999999999998999999999999999998743 2222233333333332346
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+| +++|+||+|+...... ..+....+.+..+ ...++++||++|.|++++.
T Consensus 109 ~p-~ivv~nK~Dl~~~~~~------~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~v~~~~ 158 (165)
T cd01864 109 VV-LLLIGNKCDLEEQREV------LFEEACTLAEKNG-----MLAVLETSAKESQNVEEAF 158 (165)
T ss_pred Cc-EEEEEECccccccccc------CHHHHHHHHHHcC-----CcEEEEEECCCCCCHHHHH
Confidence 77 8999999998532110 1112233333332 2478999999999998764
No 82
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.71 E-value=3.8e-16 Score=116.05 Aligned_cols=93 Identities=25% Similarity=0.342 Sum_probs=82.8
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|+.++|+++|+|+......+.++++.+++|||||+.+|...+..+++.+|++++|+|++.+. ..+....+..
T Consensus 39 ~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~-------~~~~~~~~~~ 111 (268)
T cd04170 39 SDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGV-------EVGTEKLWEF 111 (268)
T ss_pred CCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCC-------CHHHHHHHHH
Confidence 577899999999999999999999999999999999999999999999999999999998876 3556677777
Q ss_pred HHHcCCCcEEEEEeCCCCCCc
Q psy10355 85 AKTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~ 105 (156)
+...++| .++++||+|+...
T Consensus 112 ~~~~~~p-~iivvNK~D~~~~ 131 (268)
T cd04170 112 ADEAGIP-RIIFINKMDRERA 131 (268)
T ss_pred HHHcCCC-EEEEEECCccCCC
Confidence 7788899 7889999998654
No 83
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.70 E-value=6.6e-17 Score=114.38 Aligned_cols=122 Identities=13% Similarity=0.072 Sum_probs=83.1
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (156)
...++.+.....+..++ ..+.+|||||+++|...+..+++++|++|+|+|.++. .+|+....|.+.+... ..+.
T Consensus 36 ~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~---~Sf~~~~~w~~~i~~~-~~~~ 111 (189)
T cd04121 36 GYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNR---WSFDGIDRWIKEIDEH-APGV 111 (189)
T ss_pred CCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCH---HHHHHHHHHHHHHHHh-CCCC
Confidence 34445554444455555 6789999999999999999999999999999999874 3444334444444322 2467
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
| +|+++||+|+..... ...++...+.+.. +++++++||++|.|++++-
T Consensus 112 p-iilVGNK~DL~~~~~------v~~~~~~~~a~~~------~~~~~e~SAk~g~~V~~~F 159 (189)
T cd04121 112 P-KILVGNRLHLAFKRQ------VATEQAQAYAERN------GMTFFEVSPLCNFNITESF 159 (189)
T ss_pred C-EEEEEECccchhccC------CCHHHHHHHHHHc------CCEEEEecCCCCCCHHHHH
Confidence 7 899999999852110 0122233444443 4689999999999998753
No 84
>COG1159 Era GTPase [General function prediction only]
Probab=99.70 E-value=2.1e-16 Score=116.33 Aligned_cols=122 Identities=20% Similarity=0.204 Sum_probs=91.7
Q ss_pred HHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcC--------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKS--------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~--------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
..+.+.+|.....+-+..++.++.|+||||.++ +.+....++..+|+++||+|+.++. ...+..+
T Consensus 34 vS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~-------~~~d~~i 106 (298)
T COG1159 34 VSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGW-------GPGDEFI 106 (298)
T ss_pred ecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccC-------CccHHHH
Confidence 345778999999999999999999999999754 3566888889999999999998876 4566667
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHH-HHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYL-KKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+..++..+.| +++++||+|..... ..+.. +...+ .... ...++|+||++|.|++.|.
T Consensus 107 l~~lk~~~~p-vil~iNKID~~~~~---~~l~~----~~~~~~~~~~-----f~~ivpiSA~~g~n~~~L~ 164 (298)
T COG1159 107 LEQLKKTKTP-VILVVNKIDKVKPK---TVLLK----LIAFLKKLLP-----FKEIVPISALKGDNVDTLL 164 (298)
T ss_pred HHHHhhcCCC-eEEEEEccccCCcH---HHHHH----HHHHHHhhCC-----cceEEEeeccccCCHHHHH
Confidence 7777776678 79999999976321 11112 22222 2222 3489999999999998764
No 85
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.70 E-value=4.9e-17 Score=112.34 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=71.8
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
...+.+|||||++++...+..+++++|++|+|+|+++.. +|.....+...+......+.| +++++||+|+......
T Consensus 50 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~~~~ 125 (166)
T cd04122 50 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS---TYNHLSSWLTDARNLTNPNTV-IFLIGNKADLEAQRDV 125 (166)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCc
Confidence 357899999999999999999999999999999998743 222222222222222223566 8999999998532111
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
. .++...+++.. +++++++||++|+|++++
T Consensus 126 --~----~~~~~~~~~~~------~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 126 --T----YEEAKQFADEN------GLLFLECSAKTGENVEDA 155 (166)
T ss_pred --C----HHHHHHHHHHc------CCEEEEEECCCCCCHHHH
Confidence 1 11223333333 468999999999999875
No 86
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=6e-16 Score=122.10 Aligned_cols=124 Identities=27% Similarity=0.244 Sum_probs=93.2
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChH-----------HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKSFV-----------PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~-----------~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
...+|+|.+.....+.+++..+.+|||||+.+.. ..+..+++.+|++|+|+|++.+. ..+..
T Consensus 202 ~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~-------~~~~~ 274 (435)
T PRK00093 202 SDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGI-------TEQDL 274 (435)
T ss_pred cCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCC-------CHHHH
Confidence 3467999999988898999999999999975421 23456788999999999999876 35666
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+..+...+.| +++++||+|+.. .....++.+.+...+... ...+++++||++|.|++++.
T Consensus 275 ~i~~~~~~~~~~-~ivv~NK~Dl~~----~~~~~~~~~~~~~~l~~~-----~~~~i~~~SA~~~~gv~~l~ 336 (435)
T PRK00093 275 RIAGLALEAGRA-LVIVVNKWDLVD----EKTMEEFKKELRRRLPFL-----DYAPIVFISALTGQGVDKLL 336 (435)
T ss_pred HHHHHHHHcCCc-EEEEEECccCCC----HHHHHHHHHHHHHhcccc-----cCCCEEEEeCCCCCCHHHHH
Confidence 777777777888 899999999862 223444455554433322 24699999999999998764
No 87
>PRK12740 elongation factor G; Reviewed
Probab=99.69 E-value=5.9e-16 Score=127.90 Aligned_cols=94 Identities=26% Similarity=0.348 Sum_probs=84.2
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..|+.+.|+++|+|++.....+.++++.+++|||||+.+|...+..+++.+|++++|+|++.+. ..+....+.
T Consensus 34 ~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~-------~~~~~~~~~ 106 (668)
T PRK12740 34 TMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGV-------EPQTETVWR 106 (668)
T ss_pred cCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCc-------CHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999998876 356666777
Q ss_pred HHHHcCCCcEEEEEeCCCCCCc
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~ 105 (156)
.+...++| +++++||+|+...
T Consensus 107 ~~~~~~~p-~iiv~NK~D~~~~ 127 (668)
T PRK12740 107 QAEKYGVP-RIIFVNKMDRAGA 127 (668)
T ss_pred HHHHcCCC-EEEEEECCCCCCC
Confidence 77778899 7999999998654
No 88
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.69 E-value=2.6e-16 Score=108.24 Aligned_cols=113 Identities=19% Similarity=0.167 Sum_probs=73.9
Q ss_pred EEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCcEEEEEe
Q psy10355 23 AYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKHLVVLIN 98 (156)
Q Consensus 23 ~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ivv~N 98 (156)
..+..+...+.+|||||+.++...+..+++++|++++|+|+++.. +| .+..+.+..+. ..+.| +++++|
T Consensus 37 ~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-iilv~N 109 (159)
T cd04150 37 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE---RI---GEAREELQRMLNEDELRDAV-LLVFAN 109 (159)
T ss_pred EEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH---HH---HHHHHHHHHHHhcHHhcCCC-EEEEEE
Confidence 345667889999999999999999999999999999999997642 11 11222222221 12466 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+|+..... ..++.+.+ ..... ....+.++++||++|+|++++.
T Consensus 110 K~Dl~~~~~----~~~i~~~~----~~~~~-~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 110 KQDLPNAMS----AAEVTDKL----GLHSL-RNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred CCCCCCCCC----HHHHHHHh----Ccccc-CCCCEEEEEeeCCCCCCHHHHH
Confidence 999853211 11111111 11111 1124578899999999998764
No 89
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.69 E-value=1.2e-16 Score=113.89 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=78.3
Q ss_pred hcCceeeeeeEEEEeC--CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC
Q psy10355 13 EKGKTVEVGRAYFETD--RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (156)
.+.+..+.....+..+ ...+.||||||+++|...+..+++++|++|+|+|+++.. +|.....|...+.... .++
T Consensus 25 ~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~---S~~~i~~w~~~i~~~~-~~~ 100 (200)
T smart00176 25 VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARV---TYKNVPNWHRDLVRVC-ENI 100 (200)
T ss_pred CCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChH---HHHHHHHHHHHHHHhC-CCC
Confidence 3333333333444443 467999999999999999999999999999999998843 2222223333333221 467
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
| +++|+||+|+....... + .+ .+.+. ..++++++||++|+||+++
T Consensus 101 p-iilvgNK~Dl~~~~v~~---~----~~-~~~~~------~~~~~~e~SAk~~~~v~~~ 145 (200)
T smart00176 101 P-IVLCGNKVDVKDRKVKA---K----SI-TFHRK------KNLQYYDISAKSNYNFEKP 145 (200)
T ss_pred C-EEEEEECcccccccCCH---H----HH-HHHHH------cCCEEEEEeCCCCCCHHHH
Confidence 8 89999999975321111 1 11 22222 2578999999999999865
No 90
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.69 E-value=2.9e-16 Score=127.41 Aligned_cols=111 Identities=30% Similarity=0.411 Sum_probs=84.1
Q ss_pred EEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh---
Q psy10355 32 FTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS--- 108 (156)
Q Consensus 32 ~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~--- 108 (156)
++|||||||++|...+..+++.+|++++|+|++++. .+++.+.+..+...++| +++++||+|+.. .+.
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~-------~~qt~e~i~~~~~~~vp-iIvviNK~D~~~-~~~~~~ 143 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGF-------QPQTIEAINILKRRKTP-FVVAANKIDRIP-GWKSTE 143 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCC-------CHhHHHHHHHHHHcCCC-EEEEEECcCCch-hhhhhc
Confidence 799999999999999999999999999999999876 46778888888888899 899999999742 111
Q ss_pred ---------------HHHHHHHHHHHHHHHHHcCCCCC---------CCCeEEEeecccCCCCccCC
Q psy10355 109 ---------------EARYNECKDKILPYLKKLGFNAA---------KDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ---------------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+.+...++...+...|+... ..++++|+||++|+|+++|.
T Consensus 144 ~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl 210 (586)
T PRK04004 144 DAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLL 210 (586)
T ss_pred CchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHH
Confidence 11222223334445555565431 35789999999999997653
No 91
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.68 E-value=9e-16 Score=104.39 Aligned_cols=118 Identities=19% Similarity=0.154 Sum_probs=85.4
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHH--------HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVP--------NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~--------~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
+...++|.+........++..+.+|||||+.++.. .+...++.+|++++|+|+.++. ........
T Consensus 26 ~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~-------~~~~~~~~ 98 (157)
T cd01894 26 EDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGL-------TPADEEIA 98 (157)
T ss_pred cCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccC-------CccHHHHH
Confidence 34567888888888888899999999999987543 4566788999999999997754 23344555
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
..+...+.| +++++||+|+..... . .. .+...+. .+++++||++|.|++++.+
T Consensus 99 ~~~~~~~~p-iiiv~nK~D~~~~~~----~---~~----~~~~~~~-----~~~~~~Sa~~~~gv~~l~~ 151 (157)
T cd01894 99 KYLRKSKKP-VILVVNKVDNIKEED----E---AA----EFYSLGF-----GEPIPISAEHGRGIGDLLD 151 (157)
T ss_pred HHHHhcCCC-EEEEEECcccCChHH----H---HH----HHHhcCC-----CCeEEEecccCCCHHHHHH
Confidence 666667788 899999999863211 0 11 1122222 2689999999999987653
No 92
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.68 E-value=6.7e-16 Score=108.49 Aligned_cols=113 Identities=18% Similarity=0.187 Sum_probs=75.3
Q ss_pred eeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCcEEE
Q psy10355 20 VGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKHLVV 95 (156)
Q Consensus 20 ~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~iv 95 (156)
.....+..++..+.+|||||++++...+..+++++|++|+|+|+++.. ++ ......+.... ..+.| +++
T Consensus 51 ~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~---s~---~~~~~~l~~~l~~~~~~~~p-iil 123 (181)
T PLN00223 51 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV---VEARDELHRMLNEDELRDAV-LLV 123 (181)
T ss_pred eeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHH---HH---HHHHHHHHHHhcCHhhCCCC-EEE
Confidence 334456778899999999999999999999999999999999998742 11 11122222221 13567 899
Q ss_pred EEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCC--CCCCeEEEeecccCCCCccC
Q psy10355 96 LINKMDDPTVMWSEARYNECKDKILPYLKKLGFNA--AKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 96 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~Sa~~g~gi~~l 150 (156)
++||+|+.... ..+++.+ .+++.. ...+.++++||++|+|++++
T Consensus 124 v~NK~Dl~~~~----~~~~~~~-------~l~l~~~~~~~~~~~~~Sa~~g~gv~e~ 169 (181)
T PLN00223 124 FANKQDLPNAM----NAAEITD-------KLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
T ss_pred EEECCCCCCCC----CHHHHHH-------HhCccccCCCceEEEeccCCCCCCHHHH
Confidence 99999986431 1122222 223211 12346789999999999865
No 93
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.68 E-value=2.9e-16 Score=121.35 Aligned_cols=116 Identities=21% Similarity=0.235 Sum_probs=93.0
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcC---------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKS---------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~---------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|+|.|..+...+|.++.|.++||+|... ...++..++..||++|||+|+..|+ .+.+.+...
T Consensus 34 ~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Gi-------t~~D~~ia~ 106 (444)
T COG1160 34 TPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGI-------TPADEEIAK 106 (444)
T ss_pred CCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCC-------CHHHHHHHH
Confidence 469999999999999999999999999863 2456888899999999999999998 478888888
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.++..+.| +|+|+||+|-.. .+. ...-+-.+|+. .++++||.+|.|+..|.+
T Consensus 107 ~Lr~~~kp-viLvvNK~D~~~-------~e~----~~~efyslG~g-----~~~~ISA~Hg~Gi~dLld 158 (444)
T COG1160 107 ILRRSKKP-VILVVNKIDNLK-------AEE----LAYEFYSLGFG-----EPVPISAEHGRGIGDLLD 158 (444)
T ss_pred HHHhcCCC-EEEEEEcccCch-------hhh----hHHHHHhcCCC-----CceEeehhhccCHHHHHH
Confidence 88877788 899999999431 111 11112345553 669999999999988754
No 94
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.68 E-value=5.1e-16 Score=106.42 Aligned_cols=117 Identities=15% Similarity=0.051 Sum_probs=74.6
Q ss_pred eEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH---HHHcCCCcEEEEEe
Q psy10355 22 RAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML---AKTAGVKHLVVLIN 98 (156)
Q Consensus 22 ~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ivv~N 98 (156)
...+...+..+.+|||||++++...+..+++++|++++|+|+++.. ++.....+...+.. +...++| +++++|
T Consensus 37 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~N 112 (162)
T cd04157 37 VESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRL---RLVVVKDELELLLNHPDIKHRRVP-ILFFAN 112 (162)
T ss_pred eEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHH---HHHHHHHHHHHHHcCcccccCCCC-EEEEEe
Confidence 3445667889999999999999999999999999999999998743 11000111111111 1123678 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+|+..... ..++.+.+ ..... ....++++++||++|+|++++.
T Consensus 113 K~Dl~~~~~----~~~~~~~l----~~~~~-~~~~~~~~~~Sa~~g~gv~~~~ 156 (162)
T cd04157 113 KMDLPDALT----AVKITQLL----GLENI-KDKPWHIFASNALTGEGLDEGV 156 (162)
T ss_pred CccccCCCC----HHHHHHHh----CCccc-cCceEEEEEeeCCCCCchHHHH
Confidence 999864211 11111111 10000 0123578999999999998764
No 95
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.68 E-value=2.5e-16 Score=109.34 Aligned_cols=122 Identities=14% Similarity=0.144 Sum_probs=76.3
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH-HHHHcCCCcEEE
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM-LAKTAGVKHLVV 95 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~iv 95 (156)
|+......+..++..+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+...+. .....+.| +++
T Consensus 30 T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~---s~~~~~~~~~~~~~~~~~~~~p-iil 105 (169)
T cd04158 30 TIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD---RVSEAHSELAKLLTEKELRDAL-LLI 105 (169)
T ss_pred cCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH---HHHHHHHHHHHHhcChhhCCCC-EEE
Confidence 444444556778899999999999999999999999999999999997742 1111111111111 11112356 899
Q ss_pred EEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 96 LINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 96 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
++||+|+.... ...+ +..+++..+......+.++++||++|.|++++
T Consensus 106 v~NK~Dl~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~ 152 (169)
T cd04158 106 FANKQDVAGAL----SVEE----MTELLSLHKLCCGRSWYIQGCDARSGMGLYEG 152 (169)
T ss_pred EEeCcCcccCC----CHHH----HHHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence 99999985321 1122 22222111110011357899999999999875
No 96
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.68 E-value=2.8e-16 Score=109.10 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=73.4
Q ss_pred EEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCcEEEEEeC
Q psy10355 24 YFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKHLVVLINK 99 (156)
Q Consensus 24 ~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ivv~NK 99 (156)
.+...+..+.+|||||++++...+..+++++|++|+|+|+++.. +| ......+.... ..+.| +++++||
T Consensus 47 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~---s~---~~~~~~~~~~~~~~~~~~~p-iilv~NK 119 (168)
T cd04149 47 TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRD---RI---DEARQELHRIINDREMRDAL-LLVFANK 119 (168)
T ss_pred EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchh---hH---HHHHHHHHHHhcCHhhcCCc-EEEEEEC
Confidence 45567889999999999999988999999999999999998742 11 11222222221 23567 9999999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 100 MDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+|+.... ..++ +...++..... ...++++++||++|+|++++
T Consensus 120 ~Dl~~~~----~~~~----i~~~~~~~~~~-~~~~~~~~~SAk~g~gv~~~ 161 (168)
T cd04149 120 QDLPDAM----KPHE----IQEKLGLTRIR-DRNWYVQPSCATSGDGLYEG 161 (168)
T ss_pred cCCccCC----CHHH----HHHHcCCCccC-CCcEEEEEeeCCCCCChHHH
Confidence 9975321 1122 22222111111 12357899999999999765
No 97
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.68 E-value=4.2e-16 Score=108.47 Aligned_cols=118 Identities=20% Similarity=0.210 Sum_probs=76.4
Q ss_pred eeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHH-HHHHHHHcCCCcEEEEEeC
Q psy10355 21 GRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTRE-HAMLAKTAGVKHLVVLINK 99 (156)
Q Consensus 21 ~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ivv~NK 99 (156)
....+..++..+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+.. .+......+.| +++++||
T Consensus 49 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK 124 (173)
T cd04154 49 QIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRL---RLDDCKRELKELLQEERLAGAT-LLILANK 124 (173)
T ss_pred ceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHH---HHHHHHHHHHHHHhChhhcCCC-EEEEEEC
Confidence 33445567889999999999999888999999999999999997742 1110111111 11111224677 8999999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 100 MDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|+.... ..++ +...++..... ...++++++||++|+|++++.
T Consensus 125 ~Dl~~~~----~~~~----~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~ 167 (173)
T cd04154 125 QDLPGAL----SEEE----IREALELDKIS-SHHWRIQPCSAVTGEGLLQGI 167 (173)
T ss_pred cccccCC----CHHH----HHHHhCccccC-CCceEEEeccCCCCcCHHHHH
Confidence 9986421 1122 22222211111 135689999999999998764
No 98
>KOG0086|consensus
Probab=99.68 E-value=4.5e-17 Score=108.90 Aligned_cols=121 Identities=16% Similarity=0.087 Sum_probs=87.6
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCc
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKH 92 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (156)
..|+.+......+-....++.||||+|+++|...+.++++++-++++|+|++. ..+|+....|..-.+.+...++.
T Consensus 41 TiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Ts---rdsfnaLtnWL~DaR~lAs~nIv- 116 (214)
T KOG0086|consen 41 TIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS---RDSFNALTNWLTDARTLASPNIV- 116 (214)
T ss_pred eeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccc---hhhHHHHHHHHHHHHhhCCCcEE-
Confidence 34555555555555556789999999999999999999999999999999987 34455556666666777777777
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
+|++.||.|+-. ...... .+...++++ +..-+.++||++|+|+++
T Consensus 117 viL~GnKkDL~~----~R~Vtf--lEAs~FaqE------nel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 117 VILCGNKKDLDP----EREVTF--LEASRFAQE------NELMFLETSALTGENVEE 161 (214)
T ss_pred EEEeCChhhcCh----hhhhhH--HHHHhhhcc------cceeeeeecccccccHHH
Confidence 899999999852 111221 123333332 345789999999999986
No 99
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.68 E-value=1.3e-15 Score=113.35 Aligned_cols=120 Identities=17% Similarity=0.170 Sum_probs=81.8
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcCh--------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKSF--------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~--------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
...+++|..........++.++.||||||+.+. .+.+..+++.+|++++|+|++... ......+
T Consensus 29 s~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~--------~~~~~i~ 100 (270)
T TIGR00436 29 SPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWN--------GDGEFVL 100 (270)
T ss_pred CCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCC--------chHHHHH
Confidence 345678887666666667788999999998542 233567789999999999998754 2223444
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+...+.| +++|+||+|+.. .. .+.+.+..+....++ .+++++||++|.|+++|.
T Consensus 101 ~~l~~~~~p-~ilV~NK~Dl~~----~~---~~~~~~~~~~~~~~~-----~~v~~iSA~~g~gi~~L~ 156 (270)
T TIGR00436 101 TKLQNLKRP-VVLTRNKLDNKF----KD---KLLPLIDKYAILEDF-----KDIVPISALTGDNTSFLA 156 (270)
T ss_pred HHHHhcCCC-EEEEEECeeCCC----HH---HHHHHHHHHHhhcCC-----CceEEEecCCCCCHHHHH
Confidence 555566788 899999999852 11 112222222222222 378999999999999764
No 100
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.68 E-value=3.3e-16 Score=113.16 Aligned_cols=125 Identities=13% Similarity=0.013 Sum_probs=76.4
Q ss_pred EEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 23 AYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 23 ~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
....+....+.+|||||+++|...+..+++.+|++|+|+|.++.. +|.....+...+......++| +|+|+||+|+
T Consensus 37 ~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~---Sf~~l~~~~~~l~~~~~~~~p-iIlVgNK~DL 112 (220)
T cd04126 37 YLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQ---SLEELEDRFLGLTDTANEDCL-FAVVGNKLDL 112 (220)
T ss_pred EEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCc-EEEEEECccc
Confidence 334456678999999999999999999999999999999998742 222212222222211123567 8999999998
Q ss_pred CCcchh-------------HHHHHHHHHHHHHHHHHcC--------CCCCCCCeEEEeecccCCCCccCC
Q psy10355 103 PTVMWS-------------EARYNECKDKILPYLKKLG--------FNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 103 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...... .....-..++...+.+..+ +.+....+++++||++|+||+++-
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf 182 (220)
T cd04126 113 TEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELF 182 (220)
T ss_pred ccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHH
Confidence 531000 0000001122333333332 111123689999999999998763
No 101
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.67 E-value=4e-16 Score=107.63 Aligned_cols=123 Identities=17% Similarity=0.117 Sum_probs=80.2
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (156)
.++++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+...+......+.
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~~~l~~~~~~~~~~~~~~~ 108 (166)
T cd01869 32 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SFNNVKQWLQEIDRYASENV 108 (166)
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHH---HHHhHHHHHHHHHHhCCCCC
Confidence 34445555555555554 46899999999999999999999999999999998732 22222223222222222356
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
| +++++||+|+...... ..+ +...+.+.. +++++++||++|+|++++.
T Consensus 109 ~-~iiv~nK~Dl~~~~~~--~~~----~~~~~~~~~------~~~~~~~Sa~~~~~v~~~~ 156 (166)
T cd01869 109 N-KLLVGNKCDLTDKRVV--DYS----EAQEFADEL------GIPFLETSAKNATNVEQAF 156 (166)
T ss_pred c-EEEEEEChhcccccCC--CHH----HHHHHHHHc------CCeEEEEECCCCcCHHHHH
Confidence 7 8999999997532111 111 122233332 4689999999999998764
No 102
>KOG0394|consensus
Probab=99.67 E-value=7.9e-17 Score=110.62 Aligned_cols=123 Identities=18% Similarity=0.175 Sum_probs=88.6
Q ss_pred CceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----c
Q psy10355 15 GKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----A 88 (156)
Q Consensus 15 g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~ 88 (156)
.|..+.....+..++ ..+.||||+|+++|.+.....+|++|++++|+|... .++|+....|...+..... .
T Consensus 41 TIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~---~~Sfe~L~~Wr~EFl~qa~~~~Pe 117 (210)
T KOG0394|consen 41 TIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNN---PKSFENLENWRKEFLIQASPQDPE 117 (210)
T ss_pred ccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCC---hhhhccHHHHHHHHHHhcCCCCCC
Confidence 333344444444444 569999999999999999999999999999999977 4566666777765544443 2
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
..| +|+++||+|+..... .....++...+|+..| ++|+|++|||.+.|++..
T Consensus 118 ~FP-FVilGNKiD~~~~~~----r~VS~~~Aq~WC~s~g-----nipyfEtSAK~~~NV~~A 169 (210)
T KOG0394|consen 118 TFP-FVILGNKIDVDGGKS----RQVSEKKAQTWCKSKG-----NIPYFETSAKEATNVDEA 169 (210)
T ss_pred ccc-EEEEcccccCCCCcc----ceeeHHHHHHHHHhcC-----CceeEEecccccccHHHH
Confidence 356 999999999854211 1222344566676664 789999999999998764
No 103
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.67 E-value=3.8e-16 Score=109.85 Aligned_cols=130 Identities=13% Similarity=0.078 Sum_probs=80.9
Q ss_pred HhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc
Q psy10355 11 KREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA 88 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
+..+.+..+.....+..++ ..+.+|||+|+++|...+..+++++|++++|+|.++.. +|.....+...+......
T Consensus 28 ~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~---s~~~i~~~~~~~~~~~~~ 104 (182)
T cd04128 28 DYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKS---TLNSIKEWYRQARGFNKT 104 (182)
T ss_pred CCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhCCC
Confidence 3444444444434455555 57999999999999999999999999999999998743 232222333333222122
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
..| |+|+||+|+........ ...+.++...+.+.. +++++++||++|.|++++.+
T Consensus 105 ~~p--ilVgnK~Dl~~~~~~~~-~~~~~~~~~~~a~~~------~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 105 AIP--ILVGTKYDLFADLPPEE-QEEITKQARKYAKAM------KAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred CCE--EEEEEchhccccccchh-hhhhHHHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 333 67899999853111111 111223333444433 36899999999999988643
No 104
>KOG0465|consensus
Probab=99.67 E-value=1.7e-16 Score=125.67 Aligned_cols=106 Identities=27% Similarity=0.298 Sum_probs=94.8
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|+++.||++|+|+...-..+.|.++.+++||||||-+|....+.+++..|++++|+|+..|. +.|+...++
T Consensus 78 ~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GV-------qsQt~tV~r 150 (721)
T KOG0465|consen 78 TMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGV-------ESQTETVWR 150 (721)
T ss_pred eeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccce-------ehhhHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999999998 689999999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHH
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDK 118 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~ 118 (156)
++++.++| .|..+||||+-+++.... +..+..+
T Consensus 151 Q~~ry~vP-~i~FiNKmDRmGa~~~~~-l~~i~~k 183 (721)
T KOG0465|consen 151 QMKRYNVP-RICFINKMDRMGASPFRT-LNQIRTK 183 (721)
T ss_pred HHHhcCCC-eEEEEehhhhcCCChHHH-HHHHHhh
Confidence 99999999 599999999887765443 3443333
No 105
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.67 E-value=7.8e-16 Score=105.49 Aligned_cols=115 Identities=18% Similarity=0.164 Sum_probs=75.5
Q ss_pred eEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH-HHH---HcCCCcEEEEE
Q psy10355 22 RAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM-LAK---TAGVKHLVVLI 97 (156)
Q Consensus 22 ~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~ivv~ 97 (156)
...+...+..+.+|||||+.++...+..+++.+|++++|+|+++... + ....+.+. .+. ..+.| +++++
T Consensus 35 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-iiiv~ 107 (158)
T cd04151 35 VETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDR---L---GTAKEELHAMLEEEELKGAV-LLVFA 107 (158)
T ss_pred eEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhcCCc-EEEEE
Confidence 34556678899999999999999999999999999999999976420 0 11112222 111 23677 89999
Q ss_pred eCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 98 NKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 98 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
||+|+..... ..++.+. +....+ .....+++++||++|.|++++.+
T Consensus 108 nK~Dl~~~~~----~~~i~~~----~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 108 NKQDMPGALS----EAEISEK----LGLSEL-KDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred eCCCCCCCCC----HHHHHHH----hCcccc-CCCcEEEEEeeccCCCCHHHHHH
Confidence 9999853221 1111111 111111 11245899999999999988653
No 106
>KOG0095|consensus
Probab=99.67 E-value=1.9e-16 Score=105.50 Aligned_cols=121 Identities=16% Similarity=0.103 Sum_probs=89.8
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEE
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLV 94 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (156)
|+.+-+++..+..+..++.||||+|+++|+..+.++++.++++|+|+|.+- +.+|+..++|...+......++- -|
T Consensus 41 gvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydisc---qpsfdclpewlreie~yan~kvl-ki 116 (213)
T KOG0095|consen 41 GVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC---QPSFDCLPEWLREIEQYANNKVL-KI 116 (213)
T ss_pred eeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEeccc---CcchhhhHHHHHHHHHHhhcceE-EE
Confidence 444445556666677889999999999999999999999999999999977 55777788898877766666666 48
Q ss_pred EEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 95 VLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 95 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|.||+|+...-.. -+.+.+++.+ . .++-+.++||+...|++.|.
T Consensus 117 lvgnk~d~~drrev---p~qigeefs~---~------qdmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 117 LVGNKIDLADRREV---PQQIGEEFSE---A------QDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred eeccccchhhhhhh---hHHHHHHHHH---h------hhhhhhhhcccchhhHHHHH
Confidence 99999997532111 1222222221 1 14578999999999998764
No 107
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.67 E-value=9.9e-16 Score=122.00 Aligned_cols=124 Identities=20% Similarity=0.167 Sum_probs=88.0
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcC----------hHHH-HHhhhhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKS----------FVPN-MIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~----------~~~~-~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
+..+|+|.+.....+.+++..+.+|||||+.+ |... +..+++.+|++++|+|++++. ..+..
T Consensus 240 s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~-------s~~~~ 312 (472)
T PRK03003 240 DDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPI-------SEQDQ 312 (472)
T ss_pred cCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCC-------CHHHH
Confidence 44679999998888999999999999999742 2111 344678999999999998876 24555
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+..+...+.| +|+|+||+|+... .......+++...+... ...+++++||++|.|++++.
T Consensus 313 ~~~~~~~~~~~p-iIiV~NK~Dl~~~----~~~~~~~~~i~~~l~~~-----~~~~~~~~SAk~g~gv~~lf 374 (472)
T PRK03003 313 RVLSMVIEAGRA-LVLAFNKWDLVDE----DRRYYLEREIDRELAQV-----PWAPRVNISAKTGRAVDKLV 374 (472)
T ss_pred HHHHHHHHcCCC-EEEEEECcccCCh----hHHHHHHHHHHHhcccC-----CCCCEEEEECCCCCCHHHHH
Confidence 566666667888 8999999998631 11222233333222221 13689999999999998764
No 108
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.67 E-value=4.5e-16 Score=110.92 Aligned_cols=124 Identities=15% Similarity=0.086 Sum_probs=80.2
Q ss_pred hcCceeeeeeEEEEeC---CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH---
Q psy10355 13 EKGKTVEVGRAYFETD---RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK--- 86 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~--- 86 (156)
.+.+..+.....+..+ ...+.+|||||+++|...+..+++++|++|+|+|.++.. +|.....|...+....
T Consensus 30 ~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~---s~~~~~~~~~~i~~~~~~~ 106 (201)
T cd04107 30 KATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPS---TFEAVLKWKADLDSKVTLP 106 (201)
T ss_pred CCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhhccc
Confidence 3444444444444444 467899999999999999999999999999999998742 2222222322222111
Q ss_pred -HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 87 -TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 87 -~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..++| +++|+||+|+..... ...+++..+++..++ .+++++||++|.|++++.
T Consensus 107 ~~~~~p-iilv~NK~Dl~~~~~------~~~~~~~~~~~~~~~-----~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 107 NGEPIP-CLLLANKCDLKKRLA------KDGEQMDQFCKENGF-----IGWFETSAKEGINIEEAM 160 (201)
T ss_pred CCCCCc-EEEEEECCCcccccc------cCHHHHHHHHHHcCC-----ceEEEEeCCCCCCHHHHH
Confidence 14567 899999999852110 011224444454432 589999999999998753
No 109
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.66 E-value=1.1e-15 Score=105.22 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=70.0
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH--cCCCcEEEEEeCCCCCCc
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT--AGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~NK~Dl~~~ 105 (156)
....+.+|||||+++|...+..+++.+|++++|+|++++. ++. .....+..+.. .+.| +++++||+|+...
T Consensus 47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~p-~ivv~nK~Dl~~~ 119 (161)
T cd04124 47 KTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKI---TYK---NLSKWYEELREYRPEIP-CIVVANKIDLDPS 119 (161)
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhCCCCc-EEEEEECccCchh
Confidence 3457899999999999999999999999999999998753 111 11112222222 2577 8999999997421
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 106 MWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.. ++...+.+.. +++++++||++|.|++++.
T Consensus 120 -----~~----~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~ 150 (161)
T cd04124 120 -----VT----QKKFNFAEKH------NLPLYYVSAADGTNVVKLF 150 (161)
T ss_pred -----HH----HHHHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 01 1112222222 4689999999999998764
No 110
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.66 E-value=4e-16 Score=108.51 Aligned_cols=129 Identities=13% Similarity=0.078 Sum_probs=78.7
Q ss_pred HHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH
Q psy10355 10 QKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT 87 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.+..+.+..+.....+..++ ..+.+|||||+++|...+..+++.+|++++|+|+++.. +|.....|...+.....
T Consensus 27 ~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~ 103 (170)
T cd04108 27 KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVA---SLEHTRQWLEDALKEND 103 (170)
T ss_pred CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcC
Confidence 34444444444444444444 57999999999999999999999999999999997632 11111122221111111
Q ss_pred cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 88 AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 88 ~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.+++++|+||+|+..... .....+....+.++. ..+++++||++|.|++++.
T Consensus 104 ~~~~~iilVgnK~Dl~~~~~----~~~~~~~~~~~~~~~------~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 104 PSSVLLFLVGTKKDLSSPAQ----YALMEQDAIKLAAEM------QAEYWSVSALSGENVREFF 157 (170)
T ss_pred CCCCeEEEEEEChhcCcccc----ccccHHHHHHHHHHc------CCeEEEEECCCCCCHHHHH
Confidence 12233899999999753211 111122233333333 3588999999999998764
No 111
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.66 E-value=3.7e-15 Score=104.42 Aligned_cols=117 Identities=19% Similarity=0.157 Sum_probs=77.7
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcC----------hHHHHHhhhh---cCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKS----------FVPNMIGGTA---QADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~----------~~~~~~~~~~---~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
..|.|.+...+.+ + ..+.+|||||+.. +......+++ .++++++|+|++.+. .....
T Consensus 50 ~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~-------~~~~~ 119 (179)
T TIGR03598 50 TPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPL-------KELDL 119 (179)
T ss_pred CCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCC-------CHHHH
Confidence 4566666655444 2 3799999999632 3333334444 468999999998765 24445
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCc
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPL 148 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~ 148 (156)
..+..+...+.| +++++||+|+.. ........+++...++..+ ..+++|++||++|+|++
T Consensus 120 ~~~~~~~~~~~p-viiv~nK~D~~~----~~~~~~~~~~i~~~l~~~~----~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 120 EMLEWLRERGIP-VLIVLTKADKLK----KSELNKQLKKIKKALKKDA----DDPSVQLFSSLKKTGID 179 (179)
T ss_pred HHHHHHHHcCCC-EEEEEECcccCC----HHHHHHHHHHHHHHHhhcc----CCCceEEEECCCCCCCC
Confidence 556666667888 899999999863 2223334445555555443 24689999999999985
No 112
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.66 E-value=4.9e-16 Score=107.28 Aligned_cols=108 Identities=14% Similarity=0.070 Sum_probs=72.3
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
...+.+|||||++++...+..+++++|++++|+|.++.. +|+....+...+......+.| +++++||+|+......
T Consensus 49 ~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~ 124 (165)
T cd01865 49 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE---SFNAVQDWSTQIKTYSWDNAQ-VILVGNKCDMEDERVV 124 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHH---HHHHHHHHHHHHHHhCCCCCC-EEEEEECcccCccccc
Confidence 367999999999999999999999999999999997632 222222333332222213456 8999999998532111
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
. .+ ....+.+.. +++++++||++|.|+++|.+
T Consensus 125 ~--~~----~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~ 156 (165)
T cd01865 125 S--SE----RGRQLADQL------GFEFFEASAKENINVKQVFE 156 (165)
T ss_pred C--HH----HHHHHHHHc------CCEEEEEECCCCCCHHHHHH
Confidence 0 11 122223333 35899999999999987643
No 113
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.66 E-value=6.9e-16 Score=107.78 Aligned_cols=106 Identities=13% Similarity=0.065 Sum_probs=71.3
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||++++...+..+++++|++++|+|+++.. +|.....+...+.... ..+.| +++|+||+|+......
T Consensus 63 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~v 138 (180)
T cd04127 63 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQ---SFLNVRNWMSQLQTHAYCENPD-IVLCGNKADLEDQRQV 138 (180)
T ss_pred EEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-EEEEEeCccchhcCcc
Confidence 67999999999999999999999999999999998732 2222222222222111 12456 8999999998532110
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. .++...+.+.. +.+++++||++|.|++++.
T Consensus 139 ~------~~~~~~~~~~~------~~~~~e~Sak~~~~v~~l~ 169 (180)
T cd04127 139 S------EEQAKALADKY------GIPYFETSAATGTNVEKAV 169 (180)
T ss_pred C------HHHHHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 0 11233334433 3589999999999998764
No 114
>KOG0083|consensus
Probab=99.66 E-value=1.2e-16 Score=104.65 Aligned_cols=106 Identities=20% Similarity=0.162 Sum_probs=76.0
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...++.+|||+|+++|.+.+.++++.+|+.++++|... ..+|+.-+.|...+.......+. +.++.||+|++..-.
T Consensus 45 ~kvklqiwdtagqerfrsvt~ayyrda~allllydian---kasfdn~~~wlsei~ey~k~~v~-l~llgnk~d~a~er~ 120 (192)
T KOG0083|consen 45 KKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIAN---KASFDNCQAWLSEIHEYAKEAVA-LMLLGNKCDLAHERA 120 (192)
T ss_pred cEEEEEEeeccchHHHhhhhHhhhcccceeeeeeeccc---chhHHHHHHHHHHHHHHHHhhHh-Hhhhccccccchhhc
Confidence 34679999999999999999999999999999999977 45666556666555444444455 788999999752100
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
.+ .+.-+.+.+.. ++||.++||++|-|++.
T Consensus 121 v~------~ddg~kla~~y------~ipfmetsaktg~nvd~ 150 (192)
T KOG0083|consen 121 VK------RDDGEKLAEAY------GIPFMETSAKTGFNVDL 150 (192)
T ss_pred cc------cchHHHHHHHH------CCCceeccccccccHhH
Confidence 00 01122222333 57999999999999874
No 115
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.66 E-value=9.7e-16 Score=104.99 Aligned_cols=126 Identities=15% Similarity=0.124 Sum_probs=83.0
Q ss_pred HhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc
Q psy10355 11 KREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA 88 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
+..++++.+.....+..++ .++.+|||||+.++...+...++.+|++++|+|+++.. +|.....+...+......
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~ 104 (161)
T cd01861 28 QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQ---SFDNTDKWIDDVRDERGN 104 (161)
T ss_pred cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHhCCC
Confidence 4566777777777776666 46999999999999999999999999999999997743 221112222222111112
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+.| +++++||+|+.... ....+ +.....+.. +++++++||++|.|++++.+
T Consensus 105 ~~~-iilv~nK~D~~~~~--~~~~~----~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 105 DVI-IVLVGNKTDLSDKR--QVSTE----EGEKKAKEL------NAMFIETSAKAGHNVKELFR 155 (161)
T ss_pred CCE-EEEEEEChhccccC--ccCHH----HHHHHHHHh------CCEEEEEeCCCCCCHHHHHH
Confidence 377 99999999984211 11111 122222222 36899999999999987643
No 116
>PRK15494 era GTPase Era; Provisional
Probab=99.65 E-value=1.7e-15 Score=115.99 Aligned_cols=119 Identities=21% Similarity=0.173 Sum_probs=81.5
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcCh--------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSF--------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~--------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
...++|.+.....+..++.++.||||||+.+. .+....++..+|++++|+|+.+.. .......+.
T Consensus 82 ~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~-------~~~~~~il~ 154 (339)
T PRK15494 82 PKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSF-------DDITHNILD 154 (339)
T ss_pred CCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCC-------CHHHHHHHH
Confidence 45678888777788889999999999998532 233445678999999999987654 122334455
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+...+.| .++|+||+|+... ...+ +...+...+ ...+++++||++|.|++.|.
T Consensus 155 ~l~~~~~p-~IlViNKiDl~~~-----~~~~----~~~~l~~~~----~~~~i~~iSAktg~gv~eL~ 208 (339)
T PRK15494 155 KLRSLNIV-PIFLLNKIDIESK-----YLND----IKAFLTENH----PDSLLFPISALSGKNIDGLL 208 (339)
T ss_pred HHHhcCCC-EEEEEEhhcCccc-----cHHH----HHHHHHhcC----CCcEEEEEeccCccCHHHHH
Confidence 55566778 5889999998531 1222 222233221 13589999999999998753
No 117
>PRK13351 elongation factor G; Reviewed
Probab=99.65 E-value=2.6e-15 Score=124.43 Aligned_cols=95 Identities=28% Similarity=0.381 Sum_probs=85.1
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..|+.+.|+++|+|+......+.+++..+++||||||.+|...+..+++.+|++++|+|++++. ..+....+.
T Consensus 47 ~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~-------~~~~~~~~~ 119 (687)
T PRK13351 47 VTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGV-------QPQTETVWR 119 (687)
T ss_pred cCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCC-------CHHHHHHHH
Confidence 4688899999999999999999999999999999999999999999999999999999998876 356677777
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcc
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
.+...++| +++++||+|+..++
T Consensus 120 ~~~~~~~p-~iiviNK~D~~~~~ 141 (687)
T PRK13351 120 QADRYGIP-RLIFINKMDRVGAD 141 (687)
T ss_pred HHHhcCCC-EEEEEECCCCCCCC
Confidence 77778899 79999999987653
No 118
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.65 E-value=1e-15 Score=106.88 Aligned_cols=112 Identities=15% Similarity=0.157 Sum_probs=73.6
Q ss_pred EEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCcEEEEEe
Q psy10355 23 AYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKHLVVLIN 98 (156)
Q Consensus 23 ~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ivv~N 98 (156)
..+..++..+.+|||||+.++...+..+++++|++|+|+|+++.. ++ ....+.+..+. ..+.| +++++|
T Consensus 50 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~---s~---~~~~~~l~~~~~~~~~~~~p-iilv~N 122 (175)
T smart00177 50 ETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRD---RI---DEAREELHRMLNEDELRDAV-ILVFAN 122 (175)
T ss_pred EEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHH---HH---HHHHHHHHHHhhCHhhcCCc-EEEEEe
Confidence 345567889999999999999999999999999999999998742 11 11222222221 13467 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
|+|+..... ..++.+.+ ...... ...+.++++||++|+|++++
T Consensus 123 K~Dl~~~~~----~~~i~~~~----~~~~~~-~~~~~~~~~Sa~~g~gv~e~ 165 (175)
T smart00177 123 KQDLPDAMK----AAEITEKL----GLHSIR-DRNWYIQPTCATSGDGLYEG 165 (175)
T ss_pred CcCcccCCC----HHHHHHHh----CccccC-CCcEEEEEeeCCCCCCHHHH
Confidence 999853211 11222211 111111 12456889999999999875
No 119
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.65 E-value=1e-15 Score=105.93 Aligned_cols=123 Identities=15% Similarity=0.045 Sum_probs=79.7
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (156)
.+.++.+.....+..++ ..+.+|||||++++...+..+++++|++++|+|+++.. +|....++...+......+.
T Consensus 33 ~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~ 109 (167)
T cd01867 33 ISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEK---SFENIRNWMRNIEEHASEDV 109 (167)
T ss_pred ccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHH---HHHhHHHHHHHHHHhCCCCC
Confidence 33444444444444444 57899999999999888889999999999999997743 23222333333333222456
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
| +++++||+|+...... ..++ .....+.. ..+++++||++|.|++++.
T Consensus 110 p-~iiv~nK~Dl~~~~~~--~~~~----~~~~~~~~------~~~~~~~Sa~~~~~v~~~~ 157 (167)
T cd01867 110 E-RMLVGNKCDMEEKRVV--SKEE----GEALADEY------GIKFLETSAKANINVEEAF 157 (167)
T ss_pred c-EEEEEECcccccccCC--CHHH----HHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 7 8999999998632111 1111 22222332 3589999999999998764
No 120
>KOG0464|consensus
Probab=99.65 E-value=5.4e-17 Score=124.19 Aligned_cols=106 Identities=25% Similarity=0.305 Sum_probs=93.0
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+|++..|||||+|+...-.++.|.++.++++|||||-+|.-..+..++..|+++.|+|++.|. ..++...|++
T Consensus 77 tdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagv-------e~qtltvwrq 149 (753)
T KOG0464|consen 77 TDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGV-------EAQTLTVWRQ 149 (753)
T ss_pred HHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCc-------ccceeeeehh
Confidence 588899999999999999999999999999999999999999999999999999999999998 5899999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHH
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKI 119 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~ 119 (156)
..+.++| -++.+||||...+++.. ..+.+.+++
T Consensus 150 adk~~ip-~~~finkmdk~~anfe~-avdsi~ekl 182 (753)
T KOG0464|consen 150 ADKFKIP-AHCFINKMDKLAANFEN-AVDSIEEKL 182 (753)
T ss_pred ccccCCc-hhhhhhhhhhhhhhhhh-HHHHHHHHh
Confidence 9999999 48999999987655433 244444433
No 121
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.65 E-value=7.1e-16 Score=109.10 Aligned_cols=107 Identities=18% Similarity=0.094 Sum_probs=70.8
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
...+.+|||||+.++...+..+++.+|++|+|+|++... +|.....+...+......++| +++++||+|+......
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~---s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~~ 124 (191)
T cd04112 49 KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKA---SFDNIRAWLTEIKEYAQEDVV-IMLLGNKADMSGERVV 124 (191)
T ss_pred EEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhCCCCCc-EEEEEEcccchhcccc
Confidence 357999999999999988889999999999999997642 121112222222222223567 8999999997521110
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. .. +...+.+.. +.+++++||++|.|+++|.
T Consensus 125 ~--~~----~~~~l~~~~------~~~~~e~Sa~~~~~v~~l~ 155 (191)
T cd04112 125 K--RE----DGERLAKEY------GVPFMETSAKTGLNVELAF 155 (191)
T ss_pred C--HH----HHHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 0 11 122222322 3589999999999998764
No 122
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.65 E-value=1.1e-15 Score=105.88 Aligned_cols=121 Identities=19% Similarity=0.182 Sum_probs=77.5
Q ss_pred CceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----Hc
Q psy10355 15 GKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TA 88 (156)
Q Consensus 15 g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~ 88 (156)
.++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|.++.. +|.....+...+.... ..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~ 113 (170)
T cd04116 37 TIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQ---SFQNLSNWKKEFIYYADVKEPE 113 (170)
T ss_pred ceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHH---HHHhHHHHHHHHHHhcccccCC
Confidence 333333333444444 56889999999999999999999999999999997642 2222222332222211 13
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++| +++++||+|+...... .+++..+++..+ ..+++++||++|.|+.++.
T Consensus 114 ~~p-iilv~nK~Dl~~~~~~-------~~~~~~~~~~~~-----~~~~~e~Sa~~~~~v~~~~ 163 (170)
T cd04116 114 SFP-FVVLGNKNDIPERQVS-------TEEAQAWCRENG-----DYPYFETSAKDATNVAAAF 163 (170)
T ss_pred CCc-EEEEEECccccccccC-------HHHHHHHHHHCC-----CCeEEEEECCCCCCHHHHH
Confidence 467 8999999997522111 122333444443 2588999999999998753
No 123
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.65 E-value=1e-15 Score=106.03 Aligned_cols=106 Identities=22% Similarity=0.177 Sum_probs=71.2
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
...+.+|||||++++...+..+++.+|++++|+|+++.. +|....++...+......+.| +++++||+|+.....
T Consensus 52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~- 126 (168)
T cd01866 52 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLTSWLEDARQHSNSNMT-IMLIGNKCDLESRRE- 126 (168)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccC-
Confidence 467999999999999988899999999999999998632 222222222222222223577 899999999752211
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.... +...+.... +++++++||++|+|++++
T Consensus 127 -~~~~----~~~~~~~~~------~~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 127 -VSYE----EGEAFAKEH------GLIFMETSAKTASNVEEA 157 (168)
T ss_pred -CCHH----HHHHHHHHc------CCEEEEEeCCCCCCHHHH
Confidence 0111 122233333 468999999999999875
No 124
>KOG0087|consensus
Probab=99.65 E-value=2e-16 Score=110.81 Aligned_cols=130 Identities=15% Similarity=0.052 Sum_probs=93.1
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
.+++..|....+.++..+..+..++ .+.+||||+|+++|+..+.++++++-++++|+|.+.. ..|+...+|...+
T Consensus 36 rnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~---~Tfenv~rWL~EL 112 (222)
T KOG0087|consen 36 RNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRR---QTFENVERWLKEL 112 (222)
T ss_pred ccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhH---HHHHHHHHHHHHH
Confidence 3555566666677777777776666 5689999999999999999999999999999999874 3444455666666
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+.-...+++ +++|.||+||...-..+ . ++.+.+.+. ++..|+++||+.+.|++..
T Consensus 113 Rdhad~niv-imLvGNK~DL~~lraV~--t----e~~k~~Ae~------~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 113 RDHADSNIV-IMLVGNKSDLNHLRAVP--T----EDGKAFAEK------EGLFFLETSALDATNVEKA 167 (222)
T ss_pred HhcCCCCeE-EEEeecchhhhhccccc--h----hhhHhHHHh------cCceEEEecccccccHHHH
Confidence 655556888 89999999974210001 1 112222222 2468999999999998764
No 125
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.65 E-value=1.5e-15 Score=109.41 Aligned_cols=127 Identities=12% Similarity=-0.025 Sum_probs=81.9
Q ss_pred HHHhhcCceeeeeeEEEEeC---CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 9 RQKREKGKTVEVGRAYFETD---RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 9 ~~e~~~g~t~~~~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
..+..+.++.+.....+..+ ...+.+|||||++.+...+..+++.+|++|+|+|+++.. +|.....+...+...
T Consensus 26 ~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~---s~~~~~~w~~~l~~~ 102 (215)
T cd04109 26 GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQ---SFENLEDWYSMVRKV 102 (215)
T ss_pred CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHh
Confidence 34445555556555555553 367999999999999999999999999999999998742 222222333333322
Q ss_pred HH---cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 86 KT---AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 86 ~~---~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.. .+.| +++|+||+|+.... . ...++...+.+.. +++++++||++|+|++.+.
T Consensus 103 ~~~~~~~~p-iilVgNK~DL~~~~--~----v~~~~~~~~~~~~------~~~~~~iSAktg~gv~~lf 158 (215)
T cd04109 103 LKSSETQPL-VVLVGNKTDLEHNR--T----VKDDKHARFAQAN------GMESCLVSAKTGDRVNLLF 158 (215)
T ss_pred ccccCCCce-EEEEEECccccccc--c----cCHHHHHHHHHHc------CCEEEEEECCCCCCHHHHH
Confidence 21 1234 89999999985211 1 0111233333333 3588999999999998764
No 126
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.64 E-value=1.6e-15 Score=125.93 Aligned_cols=94 Identities=27% Similarity=0.326 Sum_probs=82.0
Q ss_pred CccccHHHhhcCceeeeeeEE----EEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAY----FETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~----~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
.+|+.++|+++|+|+...... +.++++++++||||||.+|...+..+++.+|++++|+|+..+. ..++.
T Consensus 56 ~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~-------~~~t~ 128 (720)
T TIGR00490 56 YLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGV-------MPQTE 128 (720)
T ss_pred ecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCC-------CccHH
Confidence 368899999999999977654 5678899999999999999999999999999999999999887 46778
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCc
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~ 105 (156)
.++..+...++| .++++||+|+...
T Consensus 129 ~~~~~~~~~~~p-~ivviNKiD~~~~ 153 (720)
T TIGR00490 129 TVLRQALKENVK-PVLFINKVDRLIN 153 (720)
T ss_pred HHHHHHHHcCCC-EEEEEEChhcccc
Confidence 888887778888 6899999998644
No 127
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.64 E-value=9e-16 Score=105.70 Aligned_cols=124 Identities=17% Similarity=0.074 Sum_probs=80.5
Q ss_pred hhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC
Q psy10355 12 REKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
..+.++.+.....+..++ ..+.+|||||++++...+..+++.++++++|+|+++.. +|.....+...+......+
T Consensus 32 ~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~ 108 (165)
T cd01868 32 SKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQ---TFENVERWLKELRDHADSN 108 (165)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhCCCC
Confidence 344555555555565555 46899999999999999999999999999999997632 2221222222222222234
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.| +++++||+|+...... .. ++...++... +++++++||++|+|++.+.
T Consensus 109 ~p-i~vv~nK~Dl~~~~~~--~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 157 (165)
T cd01868 109 IV-IMLVGNKSDLRHLRAV--PT----EEAKAFAEKN------GLSFIETSALDGTNVEEAF 157 (165)
T ss_pred Ce-EEEEEECccccccccC--CH----HHHHHHHHHc------CCEEEEEECCCCCCHHHHH
Confidence 67 8999999997532111 11 1222333322 4689999999999998764
No 128
>KOG0093|consensus
Probab=99.64 E-value=1.7e-16 Score=105.42 Aligned_cols=108 Identities=17% Similarity=0.140 Sum_probs=82.0
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...++.+|||+|+++|...+..++++++++|+++|.+. +.+|...+.|...+....-.+.+ +|+++||+|+-.-
T Consensus 68 kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitN---eeSf~svqdw~tqIktysw~naq-vilvgnKCDmd~e-- 141 (193)
T KOG0093|consen 68 KRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN---EESFNSVQDWITQIKTYSWDNAQ-VILVGNKCDMDSE-- 141 (193)
T ss_pred cEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCC---HHHHHHHHHHHHHheeeeccCce-EEEEecccCCccc--
Confidence 44679999999999999999999999999999999987 44555455666666555556788 9999999997421
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+ .-..+....+.+++|| .+|++||+...|+..+-
T Consensus 142 ---R-vis~e~g~~l~~~LGf------efFEtSaK~NinVk~~F 175 (193)
T KOG0093|consen 142 ---R-VISHERGRQLADQLGF------EFFETSAKENINVKQVF 175 (193)
T ss_pred ---e-eeeHHHHHHHHHHhCh------HHhhhcccccccHHHHH
Confidence 1 1112334556677764 78999999999987653
No 129
>KOG0461|consensus
Probab=99.64 E-value=1.3e-15 Score=114.22 Aligned_cols=136 Identities=29% Similarity=0.411 Sum_probs=111.5
Q ss_pred cccHHHhhcCceeeeeeEEEEe---------CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc
Q psy10355 6 LWLRQKREKGKTVEVGRAYFET---------DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG 76 (156)
Q Consensus 6 ~~~~~e~~~g~t~~~~~~~~~~---------~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~ 76 (156)
|.-+..++||+|.+..+..+.. +.-+++++|+|||..+++..+.+..-.|..++|+|+..|. +.
T Consensus 37 Dk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~-------Qt 109 (522)
T KOG0461|consen 37 DKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGK-------QT 109 (522)
T ss_pred ccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhccc-------cc
Confidence 5667889999999988887764 3357899999999999999999999999999999999988 57
Q ss_pred chHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccC----CCCccCC
Q psy10355 77 QTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELE----KNPLLLG 151 (156)
Q Consensus 77 ~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g----~gi~~l~ 151 (156)
++.+++......-.. .|+|+||+|...-+.....++++.+++..-++..++.. +.|++++||+.| ++|.+|+
T Consensus 110 QtAEcLiig~~~c~k-lvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g--~~PI~~vsa~~G~~~~~~i~eL~ 185 (522)
T KOG0461|consen 110 QTAECLIIGELLCKK-LVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDG--NSPIVEVSAADGYFKEEMIQELK 185 (522)
T ss_pred ccchhhhhhhhhccc-eEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCC--CCceeEEecCCCccchhHHHHHH
Confidence 888887665555445 79999999987655556667778888888888888863 589999999999 6666554
No 130
>KOG0080|consensus
Probab=99.64 E-value=2e-16 Score=106.51 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=81.8
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcE
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHL 93 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 93 (156)
|+.+..+...+.....++.||||+|+++|+..+.+++++|.++|+|+|.+.. ..|.....|...+..... .++- .
T Consensus 45 GvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~R---dtf~kLd~W~~Eld~Ystn~dii-k 120 (209)
T KOG0080|consen 45 GVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSR---DTFVKLDIWLKELDLYSTNPDII-K 120 (209)
T ss_pred eeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccch---hhHHhHHHHHHHHHhhcCCccHh-H
Confidence 4444444444555567899999999999999999999999999999999873 344444444444432222 2344 4
Q ss_pred EEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 94 VVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 94 ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
++|.||+|.-. ....-+++-..+.+.++ +-|+++||++.+|+...
T Consensus 121 mlVgNKiDkes------~R~V~reEG~kfAr~h~------~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 121 MLVGNKIDKES------ERVVDREEGLKFARKHR------CLFIECSAKTRENVQCC 165 (209)
T ss_pred hhhcccccchh------cccccHHHHHHHHHhhC------cEEEEcchhhhccHHHH
Confidence 77999999531 11122344555666653 58999999999998653
No 131
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.64 E-value=6.8e-16 Score=106.73 Aligned_cols=114 Identities=15% Similarity=0.112 Sum_probs=75.3
Q ss_pred eEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH--HcCCCcEEEEEeC
Q psy10355 22 RAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK--TAGVKHLVVLINK 99 (156)
Q Consensus 22 ~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ivv~NK 99 (156)
...+...+..+.+|||||+.++...+..+++++|++++|+|+++.. +| ......+..+. ..++| +++++||
T Consensus 36 ~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~---s~---~~~~~~l~~~~~~~~~~p-iilv~NK 108 (164)
T cd04162 36 SVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE---RL---PLARQELHQLLQHPPDLP-LVVLANK 108 (164)
T ss_pred eEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH---HH---HHHHHHHHHHHhCCCCCc-EEEEEeC
Confidence 4556677889999999999999999999999999999999997742 11 11112122221 24677 8999999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeeccc------CCCCccC
Q psy10355 100 MDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGEL------EKNPLLL 150 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~------g~gi~~l 150 (156)
+|+.... ...++.+.+ ....+....+++++++||++ ++|+.++
T Consensus 109 ~Dl~~~~----~~~~i~~~~----~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~ 157 (164)
T cd04162 109 QDLPAAR----SVQEIHKEL----ELEPIARGRRWILQGTSLDDDGSPSRMEAVKDL 157 (164)
T ss_pred cCCcCCC----CHHHHHHHh----CChhhcCCCceEEEEeeecCCCChhHHHHHHHH
Confidence 9985321 122222111 11112112357899999998 8888765
No 132
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.64 E-value=1.1e-15 Score=104.89 Aligned_cols=121 Identities=16% Similarity=0.136 Sum_probs=77.4
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEE
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLV 94 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (156)
|.+.......+...+..+.+|||||++++...+..+++++|++++|+|+++.. +|.....+...+......+.| ++
T Consensus 35 ~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~-ii 110 (163)
T cd01860 35 GAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEE---SFEKAKSWVKELQRNASPNII-IA 110 (163)
T ss_pred ceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHhCCCCCe-EE
Confidence 43344444455545577999999999999888888999999999999997642 121112222222222113466 89
Q ss_pred EEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 95 VLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 95 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++||+|+...... ... ....+.... +++++++||++|.|++++.
T Consensus 111 vv~nK~D~~~~~~~--~~~----~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd01860 111 LVGNKADLESKRQV--STE----EAQEYADEN------GLLFFETSAKTGENVNELF 155 (163)
T ss_pred EEEECccccccCcC--CHH----HHHHHHHHc------CCEEEEEECCCCCCHHHHH
Confidence 99999997532110 111 122333333 3589999999999998764
No 133
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.64 E-value=1.1e-15 Score=124.35 Aligned_cols=119 Identities=18% Similarity=0.144 Sum_probs=84.1
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHH------HHhhh--hcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPN------MIGGT--AQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~------~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
...+|+|++.....+.+++.++.+|||||+.++... +..++ ..+|++++|+|+++. .+.....
T Consensus 22 ~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l---------er~l~l~ 92 (591)
T TIGR00437 22 GNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL---------ERNLYLT 92 (591)
T ss_pred cCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc---------hhhHHHH
Confidence 346799999999999999999999999999876432 22222 478999999999763 2334444
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.+....+.| +++++||+|+........ ....+.+.. +.+++++||++|+|++++.+
T Consensus 93 ~ql~~~~~P-iIIVlNK~Dl~~~~~i~~-------d~~~L~~~l------g~pvv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 93 LQLLELGIP-MILALNLVDEAEKKGIRI-------DEEKLEERL------GVPVVPTSATEGRGIERLKD 148 (591)
T ss_pred HHHHhcCCC-EEEEEehhHHHHhCCChh-------hHHHHHHHc------CCCEEEEECCCCCCHHHHHH
Confidence 555567888 899999999753211111 122222333 46899999999999998754
No 134
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.64 E-value=1.3e-15 Score=107.87 Aligned_cols=111 Identities=10% Similarity=0.118 Sum_probs=72.0
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||+++|...+..+++++|++|+|+|.++.. +|+... .|...+.. ...++| +++|+||.|+......
T Consensus 51 ~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~---Sf~~~~~~w~~~i~~-~~~~~p-iilvgNK~DL~~~~~~ 125 (191)
T cd01875 51 VSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPS---SYENVRHKWHPEVCH-HCPNVP-ILLVGTKKDLRNDADT 125 (191)
T ss_pred EEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHH---HHHHHHHHHHHHHHh-hCCCCC-EEEEEeChhhhcChhh
Confidence 56999999999999999999999999999999998743 333222 12222221 124677 8999999998532110
Q ss_pred HHHHHH------HHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 109 EARYNE------CKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 109 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
...+.+ ..++...+.+..+ .++++++||++|+|++++
T Consensus 126 ~~~~~~~~~~~v~~~~~~~~a~~~~-----~~~~~e~SAk~g~~v~e~ 168 (191)
T cd01875 126 LKKLKEQGQAPITPQQGGALAKQIH-----AVKYLECSALNQDGVKEV 168 (191)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHcC-----CcEEEEeCCCCCCCHHHH
Confidence 000000 0112233333332 258999999999999875
No 135
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.63 E-value=9.3e-16 Score=110.86 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=77.8
Q ss_pred hhcCceeeeeeEEEEe--CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC
Q psy10355 12 REKGKTVEVGRAYFET--DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
..+.+..+.....+.. ....+.+|||||+++|...+..+++.+|++|+|+|.++.. +|.....|...+... ..+
T Consensus 42 ~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~---s~~~i~~w~~~i~~~-~~~ 117 (219)
T PLN03071 42 YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNVPTWHRDLCRV-CEN 117 (219)
T ss_pred cCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHH---HHHHHHHHHHHHHHh-CCC
Confidence 3333333333334433 3468999999999999988889999999999999998743 222222333333222 246
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+| +++|+||+|+....... + .+ .+.+. ..++++++||++|+|++++
T Consensus 118 ~p-iilvgNK~Dl~~~~v~~---~----~~-~~~~~------~~~~~~e~SAk~~~~i~~~ 163 (219)
T PLN03071 118 IP-IVLCGNKVDVKNRQVKA---K----QV-TFHRK------KNLQYYEISAKSNYNFEKP 163 (219)
T ss_pred Cc-EEEEEEchhhhhccCCH---H----HH-HHHHh------cCCEEEEcCCCCCCCHHHH
Confidence 77 89999999975321111 1 11 22222 2468999999999999875
No 136
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.63 E-value=4e-15 Score=103.77 Aligned_cols=119 Identities=18% Similarity=0.133 Sum_probs=78.1
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH-HHH---HcCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM-LAK---TAGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~ 92 (156)
|.......+..++..+.+|||||+.++...+..+++++|++++|+|+++.. ++ ......+. .+. ..+.|
T Consensus 46 t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~---~~---~~~~~~l~~~~~~~~~~~~p- 118 (174)
T cd04153 46 TIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRE---RL---PLTKEELYKMLAHEDLRKAV- 118 (174)
T ss_pred ccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHH---HH---HHHHHHHHHHHhchhhcCCC-
Confidence 444455667778899999999999999999999999999999999998742 11 11112122 111 13567
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++++||+|+.... . ..++.+.+. ..... ...++++++||++|+|++++.
T Consensus 119 ~viv~NK~Dl~~~~-~---~~~i~~~l~----~~~~~-~~~~~~~~~SA~~g~gi~e~~ 168 (174)
T cd04153 119 LLVLANKQDLKGAM-T---PAEISESLG----LTSIR-DHTWHIQGCCALTGEGLPEGL 168 (174)
T ss_pred EEEEEECCCCCCCC-C---HHHHHHHhC----ccccc-CCceEEEecccCCCCCHHHHH
Confidence 89999999985421 1 122222211 00000 124689999999999998763
No 137
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.63 E-value=1.8e-15 Score=103.76 Aligned_cols=122 Identities=18% Similarity=0.138 Sum_probs=78.8
Q ss_pred hcCceeeeeeEEEEeC----CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc
Q psy10355 13 EKGKTVEVGRAYFETD----RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA 88 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~----~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.+++..+.....+... ...+.+|||||++++...+..+++++|++++|+|+++.. +|.....+...+. ....
T Consensus 30 ~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~---s~~~l~~~~~~~~-~~~~ 105 (162)
T cd04106 30 KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRE---SFEAIESWKEKVE-AECG 105 (162)
T ss_pred CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHH---HHHHHHHHHHHHH-HhCC
Confidence 3444444433444443 467999999999999999999999999999999997743 2221122222221 1123
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++| +++++||+|+....... . ++...+.+.. +++++++||++|.|++++.
T Consensus 106 ~~p-~iiv~nK~Dl~~~~~v~--~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 155 (162)
T cd04106 106 DIP-MVLVQTKIDLLDQAVIT--N----EEAEALAKRL------QLPLFRTSVKDDFNVTELF 155 (162)
T ss_pred CCC-EEEEEEChhcccccCCC--H----HHHHHHHHHc------CCeEEEEECCCCCCHHHHH
Confidence 678 89999999975321110 1 1223333333 3589999999999998764
No 138
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.63 E-value=1.3e-15 Score=106.47 Aligned_cols=117 Identities=9% Similarity=0.066 Sum_probs=72.9
Q ss_pred EEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 25 FETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 25 ~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
+..++ ..+.+|||||+++|...+..+++++|++|+|+|.++.. +|.... .|...+... ..+.| +++|+||+|
T Consensus 42 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~---s~~~~~~~w~~~i~~~-~~~~p-iilvgnK~D 116 (175)
T cd01874 42 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS---SFENVKEKWVPEITHH-CPKTP-FLLVGTQID 116 (175)
T ss_pred EEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHH---HHHHHHHHHHHHHHHh-CCCCC-EEEEEECHh
Confidence 44445 67899999999999888888999999999999998743 222111 122222211 23567 899999999
Q ss_pred CCCcchhHHHHHH------HHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 102 DPTVMWSEARYNE------CKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 102 l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+.........+.. ..++...+.+..+ .++++++||++|+|++++-
T Consensus 117 l~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~-----~~~~~e~SA~tg~~v~~~f 167 (175)
T cd01874 117 LRDDPSTIEKLAKNKQKPITPETGEKLARDLK-----AVKYVECSALTQKGLKNVF 167 (175)
T ss_pred hhhChhhHHHhhhccCCCcCHHHHHHHHHHhC-----CcEEEEecCCCCCCHHHHH
Confidence 7532110000000 0011222222222 3689999999999998753
No 139
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.63 E-value=2.6e-15 Score=103.43 Aligned_cols=123 Identities=15% Similarity=0.057 Sum_probs=80.0
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (156)
.+++..+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|.++. .+|+....+...+......+.
T Consensus 30 ~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~sf~~~~~~~~~~~~~~~~~~ 106 (161)
T cd04117 30 ISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSE---RSYQHIMKWVSDVDEYAPEGV 106 (161)
T ss_pred CCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCH---HHHHHHHHHHHHHHHhCCCCC
Confidence 34444444444555555 5689999999999998899999999999999999773 333333333333322222356
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
| +++++||.|+....... .++...+.+.. +.+++++||++|.|++++.
T Consensus 107 ~-iilvgnK~Dl~~~~~v~------~~~~~~~~~~~------~~~~~e~Sa~~~~~v~~~f 154 (161)
T cd04117 107 Q-KILIGNKADEEQKRQVG------DEQGNKLAKEY------GMDFFETSACTNSNIKESF 154 (161)
T ss_pred e-EEEEEECcccccccCCC------HHHHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 7 89999999975321100 11122223333 3589999999999998764
No 140
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.63 E-value=2.2e-15 Score=103.33 Aligned_cols=124 Identities=18% Similarity=0.097 Sum_probs=79.5
Q ss_pred hhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC
Q psy10355 12 REKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
..+.++.+.....+..++ ..+.+|||||+.++...+..+++.+|++++|+|+++.. +++...++...+......+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~l~~~~~~~~~~ 105 (164)
T smart00175 29 YKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRE---SFENLKNWLKELREYADPN 105 (164)
T ss_pred CCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhCCCC
Confidence 334455555555566655 57899999999999999999999999999999997743 1111111222111111135
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+| +++++||+|+..... ...+. ...+.+.. +++++++||++|.|++++.
T Consensus 106 ~p-ivvv~nK~D~~~~~~--~~~~~----~~~~~~~~------~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 106 VV-IMLVGNKSDLEDQRQ--VSREE----AEAFAEEH------GLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred Ce-EEEEEEchhcccccC--CCHHH----HHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 77 899999999753111 01111 22233333 4579999999999998754
No 141
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.63 E-value=4e-15 Score=118.52 Aligned_cols=117 Identities=20% Similarity=0.194 Sum_probs=86.2
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcC--------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKS--------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~--------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
+..+|+|.+.....+.+.+..+.+|||||+.. +...+..+++.+|++|+|+|++++. ........
T Consensus 67 ~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~-------s~~~~~i~ 139 (472)
T PRK03003 67 EDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGA-------TATDEAVA 139 (472)
T ss_pred cCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCC-------CHHHHHHH
Confidence 45789999999999999999999999999863 4455677889999999999998875 23344555
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+...+.| +++|+||+|+.... . + ...+ ...++. ..+++||++|.|+++|.
T Consensus 140 ~~l~~~~~p-iilV~NK~Dl~~~~--~----~----~~~~-~~~g~~-----~~~~iSA~~g~gi~eL~ 191 (472)
T PRK03003 140 RVLRRSGKP-VILAANKVDDERGE--A----D----AAAL-WSLGLG-----EPHPVSALHGRGVGDLL 191 (472)
T ss_pred HHHHHcCCC-EEEEEECccCCccc--h----h----hHHH-HhcCCC-----CeEEEEcCCCCCcHHHH
Confidence 666667888 89999999975321 1 0 1111 123331 34799999999998864
No 142
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.63 E-value=8.8e-15 Score=100.80 Aligned_cols=125 Identities=26% Similarity=0.205 Sum_probs=84.4
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcChH-----------HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFV-----------PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTRE 80 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~-----------~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~ 80 (156)
..++++.+.....+..++..+.+|||||+.+.. .....+++.+|++++|+|+..+. ......
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~ 104 (174)
T cd01895 32 DIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGI-------TEQDLR 104 (174)
T ss_pred CCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCc-------chhHHH
Confidence 356777777777788888899999999975431 12345678999999999998765 233344
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 81 HAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 81 ~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+..+...+.| +++++||+|+.... ........+.+...+... ...+++++||++|+|++++.
T Consensus 105 ~~~~~~~~~~~-~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~ 167 (174)
T cd01895 105 IAGLILEEGKA-LVIVVNKWDLVEKD--SKTMKEFKKEIRRKLPFL-----DYAPIVFISALTGQGVDKLF 167 (174)
T ss_pred HHHHHHhcCCC-EEEEEeccccCCcc--HHHHHHHHHHHHhhcccc-----cCCceEEEeccCCCCHHHHH
Confidence 45555556777 89999999986421 112333333333322211 23689999999999998764
No 143
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.63 E-value=4.9e-15 Score=101.27 Aligned_cols=110 Identities=16% Similarity=0.112 Sum_probs=72.3
Q ss_pred EEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCC
Q psy10355 25 FETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMD 101 (156)
Q Consensus 25 ~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~D 101 (156)
+..++ ..+.+|||||++++...+..+++.+|++++|+|.++.. +|.....+...+.... ..+.| +++++||+|
T Consensus 42 ~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~D 117 (162)
T cd04138 42 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRK---SFEDIHTYREQIKRVKDSDDVP-MVLVGNKCD 117 (162)
T ss_pred EEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECcc
Confidence 44444 45888999999999999999999999999999997632 1211111222222111 23567 899999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 102 DPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...... .++...+.+.. +++++++||++|.|++++.
T Consensus 118 l~~~~~~-------~~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 154 (162)
T cd04138 118 LAARTVS-------SRQGQDLAKSY------GIPYIETSAKTRQGVEEAF 154 (162)
T ss_pred cccceec-------HHHHHHHHHHh------CCeEEEecCCCCCCHHHHH
Confidence 8642111 11222333333 3589999999999998764
No 144
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.63 E-value=8.4e-16 Score=107.60 Aligned_cols=113 Identities=14% Similarity=0.095 Sum_probs=73.3
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC-cchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG-GQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
..++.+|||+|+++|...+..+++++|++|+|+|.++. .+|... ..|...+... ..++| +++|+||+|+.....
T Consensus 48 ~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~---~Sf~~~~~~w~~~i~~~-~~~~p-iilvgnK~Dl~~~~~ 122 (176)
T cd04133 48 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISR---ASYENVLKKWVPELRHY-APNVP-IVLVGTKLDLRDDKQ 122 (176)
T ss_pred EEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCH---HHHHHHHHHHHHHHHHh-CCCCC-EEEEEeChhhccChh
Confidence 36799999999999999999999999999999999874 334332 2333333222 23577 899999999843110
Q ss_pred hH----HHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 108 SE----ARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 108 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.. .......++...+.+..+. .+++++||++|.||+++-
T Consensus 123 ~~~~~~~~~~v~~~~~~~~a~~~~~-----~~~~E~SAk~~~nV~~~F 165 (176)
T cd04133 123 YLADHPGASPITTAQGEELRKQIGA-----AAYIECSSKTQQNVKAVF 165 (176)
T ss_pred hhhhccCCCCCCHHHHHHHHHHcCC-----CEEEECCCCcccCHHHHH
Confidence 00 0000012223333343321 269999999999998753
No 145
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.63 E-value=2.5e-15 Score=105.64 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=73.8
Q ss_pred eEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-H---HcCCCcEEEEE
Q psy10355 22 RAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-K---TAGVKHLVVLI 97 (156)
Q Consensus 22 ~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~ivv~ 97 (156)
...+...+..+.+|||||++++...+..+++++|++|+|+|+++.. +|. .....+... . ..+.| +++++
T Consensus 53 ~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~---s~~---~~~~~l~~~~~~~~~~~~p-iilv~ 125 (182)
T PTZ00133 53 VETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRE---RIG---DAREELERMLSEDELRDAV-LLVFA 125 (182)
T ss_pred eEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH---HHH---HHHHHHHHHHhCHhhcCCC-EEEEE
Confidence 3455668899999999999999999999999999999999997632 111 122222222 1 12456 89999
Q ss_pred eCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 98 NKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 98 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
||.|+..... ..++.+.+ ....+ ....+.++++||++|+|++++.
T Consensus 126 NK~Dl~~~~~----~~~i~~~l----~~~~~-~~~~~~~~~~Sa~tg~gv~e~~ 170 (182)
T PTZ00133 126 NKQDLPNAMS----TTEVTEKL----GLHSV-RQRNWYIQGCCATTAQGLYEGL 170 (182)
T ss_pred eCCCCCCCCC----HHHHHHHh----CCCcc-cCCcEEEEeeeCCCCCCHHHHH
Confidence 9999753211 11221111 11111 1123567899999999998753
No 146
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.62 E-value=2.1e-15 Score=105.29 Aligned_cols=113 Identities=13% Similarity=0.135 Sum_probs=72.4
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||++++...+..+++++|++|+|+|.++.. +|.... .+...+.. ...+.| +++|+||+|+......
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---sf~~~~~~~~~~~~~-~~~~~p-iilvgnK~Dl~~~~~~ 123 (174)
T cd01871 49 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPA---SFENVRAKWYPEVRH-HCPNTP-IILVGTKLDLRDDKDT 123 (174)
T ss_pred EEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHH-hCCCCC-EEEEeeChhhccChhh
Confidence 57899999999999988889999999999999998742 222111 12222221 123577 8999999998532111
Q ss_pred HHHHHH------HHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 109 EARYNE------CKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 109 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.....+ ..++...+.+..+ ..+++++||++|+|++++-+
T Consensus 124 ~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~i~~~f~ 168 (174)
T cd01871 124 IEKLKEKKLTPITYPQGLAMAKEIG-----AVKYLECSALTQKGLKTVFD 168 (174)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHcC-----CcEEEEecccccCCHHHHHH
Confidence 111100 0122233444442 24899999999999987643
No 147
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.62 E-value=3.7e-15 Score=102.34 Aligned_cols=112 Identities=16% Similarity=0.121 Sum_probs=74.2
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-HHcCCCcEEEEEeCC
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-KTAGVKHLVVLINKM 100 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ivv~NK~ 100 (156)
.+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+...+... ...++| +++++||+
T Consensus 42 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~ 117 (164)
T cd04145 42 QCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRG---SFEEVDKFHTQILRVKDRDEFP-MILVGNKA 117 (164)
T ss_pred EEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhCCCCCC-EEEEeeCc
Confidence 344444 46889999999999999999999999999999998742 222222232222222 123677 89999999
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 101 DDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 101 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+...... .. +....+++.. +++++++||++|.|++++.
T Consensus 118 Dl~~~~~~--~~----~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 118 DLEHQRKV--SR----EEGQELARKL------KIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ccccccee--cH----HHHHHHHHHc------CCcEEEeeCCCCCCHHHHH
Confidence 98532110 11 1122333332 3589999999999998764
No 148
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.62 E-value=1.9e-15 Score=105.25 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=74.4
Q ss_pred EEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCC
Q psy10355 25 FETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMD 101 (156)
Q Consensus 25 ~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~D 101 (156)
+..++ ..+.+|||||..+|...+..+++.+|++++|+|.++.. +|.....+...+.... ..++| +++|+||+|
T Consensus 43 ~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~---Sf~~~~~~~~~i~~~~~~~~~p-iilvgNK~D 118 (172)
T cd04141 43 ARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRH---SFQEASEFKKLITRVRLTEDIP-LVLVGNKVD 118 (172)
T ss_pred EEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchh---HHHHHHHHHHHHHHhcCCCCCC-EEEEEEChh
Confidence 34444 56999999999999999999999999999999998743 3332233333333332 24577 899999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 102 DPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+..... .. .++...+.+.. +++++++||++|.|++++
T Consensus 119 l~~~~~----v~--~~~~~~~a~~~------~~~~~e~Sa~~~~~v~~~ 155 (172)
T cd04141 119 LESQRQ----VT--TEEGRNLAREF------NCPFFETSAALRHYIDDA 155 (172)
T ss_pred hhhcCc----cC--HHHHHHHHHHh------CCEEEEEecCCCCCHHHH
Confidence 742110 00 11122233333 468999999999999875
No 149
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.62 E-value=3.3e-15 Score=105.04 Aligned_cols=112 Identities=20% Similarity=0.207 Sum_probs=70.8
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH-HHHHHHHHcCCCcEEEEEeCCCCCCcc
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR-EHAMLAKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
.+..+.+|||||++++...+..+++++|++++|+|+++.. ++.....+. +........+.| +++++||+|+....
T Consensus 50 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---~~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~~ 125 (183)
T cd04152 50 KGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVE---RMEEAKTELHKITRFSENQGVP-VLVLANKQDLPNAL 125 (183)
T ss_pred CceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHhhhhcCCCc-EEEEEECcCccccC
Confidence 4578999999999999999999999999999999997742 110001111 122222335678 89999999975311
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. ..+ +...+..........++++++||++|+|++++.
T Consensus 126 -~---~~~----~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 162 (183)
T cd04152 126 -S---VSE----VEKLLALHELSASTPWHVQPACAIIGEGLQEGL 162 (183)
T ss_pred -C---HHH----HHHHhCccccCCCCceEEEEeecccCCCHHHHH
Confidence 1 111 111111111111123578999999999998763
No 150
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.62 E-value=2.3e-15 Score=103.43 Aligned_cols=124 Identities=11% Similarity=0.045 Sum_probs=77.9
Q ss_pred hhcCceeeeeeEEEEeC--CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH--
Q psy10355 12 REKGKTVEVGRAYFETD--RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-- 87 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-- 87 (156)
..+.++.+.....+..+ ...+.+|||||++++...+..+++.+|++|+|+|+++.. +|.....+...+.....
T Consensus 29 ~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~---s~~~~~~~~~~~~~~~~~~ 105 (168)
T cd04119 29 YLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQ---SFEALDSWLKEMKQEGGPH 105 (168)
T ss_pred CCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHH---HHHhHHHHHHHHHHhcccc
Confidence 34444444444444443 467999999999999988999999999999999998742 22212223332222221
Q ss_pred ---cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 88 ---AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 88 ---~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.| +++++||+|+..... ....+ ...+.+.. +.+++++||++|.|++++.
T Consensus 106 ~~~~~~p-iilv~nK~Dl~~~~~--~~~~~----~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 106 GNMENIV-VVVCANKIDLTKHRA--VSEDE----GRLWAESK------GFKYFETSACTGEGVNEMF 159 (168)
T ss_pred ccCCCce-EEEEEEchhcccccc--cCHHH----HHHHHHHc------CCeEEEEECCCCCCHHHHH
Confidence 3456 899999999752110 01111 22222332 3589999999999998764
No 151
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.62 E-value=2.1e-15 Score=103.83 Aligned_cols=112 Identities=20% Similarity=0.124 Sum_probs=73.4
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-HHcCCCcEEEEEeCC
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-KTAGVKHLVVLINKM 100 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ivv~NK~ 100 (156)
.+..++ ..+.+|||||++++...+..+++++|++++|+|.++.. +|+....+...+... ...+.| +++++||+
T Consensus 41 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~ 116 (164)
T cd04175 41 QVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQS---TFNDLQDLREQILRVKDTEDVP-MILVGNKC 116 (164)
T ss_pred EEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECC
Confidence 444444 45789999999999999999999999999999987632 222122222222211 124578 89999999
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 101 DDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 101 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+....... .. ....+.+.. +++++++||++|.|++++.
T Consensus 117 Dl~~~~~~~--~~----~~~~~~~~~------~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 117 DLEDERVVG--KE----QGQNLARQW------GCAFLETSAKAKINVNEIF 155 (164)
T ss_pred cchhccEEc--HH----HHHHHHHHh------CCEEEEeeCCCCCCHHHHH
Confidence 985321111 11 122222332 3689999999999998753
No 152
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=8.5e-15 Score=100.75 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=88.9
Q ss_pred hcCceeeeeeEEEEeCC-eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC-C
Q psy10355 13 EKGKTVEVGRAYFETDR-KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG-V 90 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~-~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 90 (156)
.|.+|+..-++.+...+ ..++++|||||++|.-+|....+++.++|+++|++++. ......++......+ +
T Consensus 50 kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~-------~~~a~~ii~f~~~~~~i 122 (187)
T COG2229 50 KRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPI-------TFHAEEIIDFLTSRNPI 122 (187)
T ss_pred ccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCc-------chHHHHHHHHHhhccCC
Confidence 44589999999999877 89999999999999999999999999999999999875 123355566666666 6
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
| +++++||.|+..+...+ .+++.+ +... ...|+|+++|..+++..+
T Consensus 123 p-~vVa~NK~DL~~a~ppe----~i~e~l----~~~~----~~~~vi~~~a~e~~~~~~ 168 (187)
T COG2229 123 P-VVVAINKQDLFDALPPE----KIREAL----KLEL----LSVPVIEIDATEGEGARD 168 (187)
T ss_pred C-EEEEeeccccCCCCCHH----HHHHHH----Hhcc----CCCceeeeecccchhHHH
Confidence 7 89999999997553322 222222 2111 157999999999887653
No 153
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.62 E-value=5.9e-15 Score=116.24 Aligned_cols=116 Identities=22% Similarity=0.223 Sum_probs=88.9
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCC--------cChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGH--------KSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~--------~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..+|+|.+.....+.+.+..+.+|||||+ +.+...+..+++.+|++++|+|+..+. .....+...
T Consensus 29 ~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~-------~~~d~~i~~ 101 (429)
T TIGR03594 29 DTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGL-------TPEDEEIAK 101 (429)
T ss_pred CCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCC-------CHHHHHHHH
Confidence 35799999999999999999999999997 334566788899999999999998876 355666777
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+...+.| +++|+||+|+...... ... +..+++ .+++++||++|.|+++|.
T Consensus 102 ~l~~~~~p-iilVvNK~D~~~~~~~----------~~~-~~~lg~-----~~~~~vSa~~g~gv~~ll 152 (429)
T TIGR03594 102 WLRKSGKP-VILVANKIDGKKEDAV----------AAE-FYSLGF-----GEPIPISAEHGRGIGDLL 152 (429)
T ss_pred HHHHhCCC-EEEEEECccCCccccc----------HHH-HHhcCC-----CCeEEEeCCcCCChHHHH
Confidence 77777888 8999999997532110 111 122333 368999999999998753
No 154
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.62 E-value=2.4e-15 Score=103.06 Aligned_cols=122 Identities=14% Similarity=0.134 Sum_probs=76.9
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-HHcCCC
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-KTAGVK 91 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 91 (156)
..|.+.......+......+.+|||||++++.......++.+|++++|+|+++.. +|.....+...+... ...+.|
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~~ 108 (161)
T cd01863 32 TIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRD---TFTNLETWLNELETYSTNNDIV 108 (161)
T ss_pred cccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHH---HHHhHHHHHHHHHHhCCCCCCc
Confidence 3334333333333333467999999999999888888999999999999997643 111111122211111 224567
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++++||+|+....... ++...+.+.. +++++++||++|+|++++.
T Consensus 109 -~~iv~nK~D~~~~~~~~-------~~~~~~~~~~------~~~~~~~Sa~~~~gi~~~~ 154 (161)
T cd01863 109 -KMLVGNKIDKENREVTR-------EEGLKFARKH------NMLFIETSAKTRDGVQQAF 154 (161)
T ss_pred -EEEEEECCcccccccCH-------HHHHHHHHHc------CCEEEEEecCCCCCHHHHH
Confidence 89999999986322221 1122333332 4689999999999998764
No 155
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.62 E-value=4.7e-15 Score=104.81 Aligned_cols=106 Identities=20% Similarity=0.162 Sum_probs=70.4
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---cCCCcEEEEEeCCCCCCcc
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT---AGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~NK~Dl~~~~ 106 (156)
..+.+|||||+++|...+..+++.+|++++|+|.++.. +|.....+...+..... .+.| +++|+||+|+....
T Consensus 47 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl~~~~ 122 (190)
T cd04144 47 CMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRS---TFERVERFREQIQRVKDESAADVP-IMIVGNKCDKVYER 122 (190)
T ss_pred EEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhcccCCCCC-EEEEEEChhccccC
Confidence 45889999999999999999999999999999997743 22212223332322221 3567 89999999975311
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.. ...+ ...+.+.. +++++++||++|.|++++.
T Consensus 123 ~v--~~~~----~~~~~~~~------~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 123 EV--STEE----GAALARRL------GCEFIEASAKTNVNVERAF 155 (190)
T ss_pred cc--CHHH----HHHHHHHh------CCEEEEecCCCCCCHHHHH
Confidence 10 0111 22222332 3589999999999998753
No 156
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.62 E-value=2.9e-15 Score=102.47 Aligned_cols=117 Identities=18% Similarity=0.213 Sum_probs=77.2
Q ss_pred eeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH----HHHcCCCcE
Q psy10355 18 VEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML----AKTAGVKHL 93 (156)
Q Consensus 18 ~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 93 (156)
.......+.+++..+.+|||||+..+...+..+++.+|++++|+|++... ++ ......+.. ....+.| +
T Consensus 31 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~---~~~~~~~~~~~~~~~~~~~p-i 103 (158)
T cd00878 31 IGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE---RI---EEAKEELHKLLNEEELKGVP-L 103 (158)
T ss_pred cCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH---HH---HHHHHHHHHHHhCcccCCCc-E
Confidence 33444456667889999999999999888999999999999999998752 00 111222221 1124677 8
Q ss_pred EEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 94 VVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 94 ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
++++||+|+.... ..+++.+.+.. ... ....++++++||++|.|++++
T Consensus 104 iiv~nK~D~~~~~----~~~~~~~~~~~----~~~-~~~~~~~~~~Sa~~~~gv~~~ 151 (158)
T cd00878 104 LIFANKQDLPGAL----SVSELIEKLGL----EKI-LGRRWHIQPCSAVTGDGLDEG 151 (158)
T ss_pred EEEeeccCCcccc----CHHHHHHhhCh----hhc-cCCcEEEEEeeCCCCCCHHHH
Confidence 9999999986422 12222222211 101 112568999999999999875
No 157
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.62 E-value=4e-15 Score=102.69 Aligned_cols=108 Identities=17% Similarity=0.116 Sum_probs=71.0
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---cCCCcEEEEEeCCCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT---AGVKHLVVLINKMDDPT 104 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~NK~Dl~~ 104 (156)
....+.+|||||+++|...+..+++.+|++++|+|.++.. +|....++.+.+..... .++| +++|+||+|+..
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~ 122 (165)
T cd04140 47 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQ---SLEELKPIYELICEIKGNNIEKIP-IMLVGNKCDESH 122 (165)
T ss_pred EEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhcCCCCCCC-EEEEEECccccc
Confidence 4467999999999999988888999999999999997743 12111222222222221 3577 899999999853
Q ss_pred cchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 105 VMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..... .. ....+.... ..+++++||++|+|++++.
T Consensus 123 ~~~v~--~~----~~~~~~~~~------~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 123 KREVS--SN----EGAACATEW------NCAFMETSAKTNHNVQELF 157 (165)
T ss_pred cCeec--HH----HHHHHHHHh------CCcEEEeecCCCCCHHHHH
Confidence 11100 11 111122222 3588999999999998764
No 158
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.61 E-value=4.1e-15 Score=103.06 Aligned_cols=117 Identities=17% Similarity=0.175 Sum_probs=75.2
Q ss_pred eeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCcE
Q psy10355 18 VEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKHL 93 (156)
Q Consensus 18 ~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 93 (156)
+......+..++..+.+|||||+.++...+..+++++|++++|+|+++.. ++ ......+..+. ..+.| +
T Consensus 31 ~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~---s~---~~~~~~l~~l~~~~~~~~~p-i 103 (167)
T cd04161 31 VGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD---RV---QEVKEILRELLQHPRVSGKP-I 103 (167)
T ss_pred ccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh---HH---HHHHHHHHHHHcCccccCCc-E
Confidence 33444566778899999999999999999999999999999999998742 11 11122222221 13667 8
Q ss_pred EEEEeCCCCCCcchhHHHHHHHHHHH--HHHHHHcCCCCCCCCeEEEeecccC------CCCcc
Q psy10355 94 VVLINKMDDPTVMWSEARYNECKDKI--LPYLKKLGFNAAKDLSFMPCSGELE------KNPLL 149 (156)
Q Consensus 94 ivv~NK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~Sa~~g------~gi~~ 149 (156)
++++||+|+..... ..++.+.+ ..+.+..+ ..++++++||++| .|+.+
T Consensus 104 liv~NK~Dl~~~~~----~~~i~~~~~l~~~~~~~~----~~~~~~~~Sa~~g~~~~~~~g~~~ 159 (167)
T cd04161 104 LVLANKQDKKNALL----GADVIEYLSLEKLVNENK----SLCHIEPCSAIEGLGKKIDPSIVE 159 (167)
T ss_pred EEEEeCCCCcCCCC----HHHHHHhcCcccccCCCC----ceEEEEEeEceeCCCCccccCHHH
Confidence 99999999864321 11212111 11111111 2468899999998 66653
No 159
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.61 E-value=3.2e-15 Score=102.75 Aligned_cols=106 Identities=17% Similarity=0.085 Sum_probs=69.3
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||+++|...+..+++++|++++|+|.++.. +|.....+...+.... ..++| +++++||+|+......
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~~~~ 124 (163)
T cd04176 49 SVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQ---TFQDIKPMRDQIVRVKGYEKVP-IILVGNKVDLESEREV 124 (163)
T ss_pred EEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcCcc
Confidence 45889999999999999999999999999999998742 2211122222222111 14678 8999999997531110
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
... +...+.+.. +.+++++||++|.|++++.
T Consensus 125 --~~~----~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04176 125 --SSA----EGRALAEEW------GCPFMETSAKSKTMVNELF 155 (163)
T ss_pred --CHH----HHHHHHHHh------CCEEEEecCCCCCCHHHHH
Confidence 001 112222222 3589999999999998753
No 160
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.61 E-value=2.2e-15 Score=106.04 Aligned_cols=113 Identities=13% Similarity=0.096 Sum_probs=73.4
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC-cchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG-GQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.+|||+|+++|...+..+++++|++++|+|.++. .+|... ..|...+.... .+.| +++|+||+|+.....
T Consensus 52 ~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~---~Sf~~~~~~w~~~i~~~~-~~~p-iilVgNK~DL~~~~~ 126 (182)
T cd04172 52 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP---ETLDSVLKKWKGEIQEFC-PNTK-MLLVGCKSDLRTDLT 126 (182)
T ss_pred EEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHC-CCCC-EEEEeEChhhhcChh
Confidence 35699999999999999999999999999999999874 233322 23333333221 3567 899999999742100
Q ss_pred hH------HHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCC-CccCC
Q psy10355 108 SE------ARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKN-PLLLG 151 (156)
Q Consensus 108 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~g-i~~l~ 151 (156)
.. ....-..++...+.+..++ .+++++||++|+| ++++-
T Consensus 127 ~~~~~~~~~~~~v~~~~~~~~a~~~~~-----~~~~E~SAk~~~n~v~~~F 172 (182)
T cd04172 127 TLVELSNHRQTPVSYDQGANMAKQIGA-----ATYIECSALQSENSVRDIF 172 (182)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHcCC-----CEEEECCcCCCCCCHHHHH
Confidence 00 0000011234444454431 4899999999998 87653
No 161
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.61 E-value=3.4e-15 Score=106.39 Aligned_cols=127 Identities=17% Similarity=0.192 Sum_probs=73.9
Q ss_pred HHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChH--------HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 10 QKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFV--------PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~--------~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
.+..++++.+.....+.+++ ..+.+|||||..++. .....+++.+|++++|+|+++.. +|+....+.
T Consensus 27 ~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~---S~~~~~~~~ 103 (198)
T cd04142 27 EEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPD---SFHYVKLLR 103 (198)
T ss_pred cccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHH---HHHHHHHHH
Confidence 33444444443333444555 568899999986542 12345678999999999998743 221111222
Q ss_pred HHHHHHH---HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 80 EHAMLAK---TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 80 ~~~~~~~---~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+.... ..++| +++|+||+|+....... .+ .+..+.+.. .+++++++||++|.|+++|-
T Consensus 104 ~~i~~~~~~~~~~~p-iiivgNK~Dl~~~~~~~--~~----~~~~~~~~~-----~~~~~~e~Sak~g~~v~~lf 166 (198)
T cd04142 104 QQILETRPAGNKEPP-IVVVGNKRDQQRHRFAP--RH----VLSVLVRKS-----WKCGYLECSAKYNWHILLLF 166 (198)
T ss_pred HHHHHhcccCCCCCC-EEEEEECcccccccccc--HH----HHHHHHHHh-----cCCcEEEecCCCCCCHHHHH
Confidence 2222221 24577 89999999985321111 11 122222211 24689999999999998764
No 162
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.61 E-value=2.7e-15 Score=102.93 Aligned_cols=122 Identities=17% Similarity=0.092 Sum_probs=79.4
Q ss_pred cCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCC
Q psy10355 14 KGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVK 91 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (156)
+.++.+.....+..++ ..+.+|||||++++...+...++.+|++++|+|+++.. +|.....+...+......+.|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~ 107 (161)
T cd04113 31 HTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRT---SFEALPTWLSDARALASPNIV 107 (161)
T ss_pred CceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhCCCCCe
Confidence 3344444444444444 56899999999999988999999999999999998743 222122333333333334677
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++++||+|+.... ... .++...+.+.. +++++++||++|.|++++-
T Consensus 108 -iivv~nK~D~~~~~--~~~----~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 108 -VILVGNKSDLADQR--EVT----FLEASRFAQEN------GLLFLETSALTGENVEEAF 154 (161)
T ss_pred -EEEEEEchhcchhc--cCC----HHHHHHHHHHc------CCEEEEEECCCCCCHHHHH
Confidence 89999999975311 001 11222333333 3689999999999998764
No 163
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.61 E-value=8.5e-15 Score=100.25 Aligned_cols=110 Identities=19% Similarity=0.201 Sum_probs=71.3
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH----HHHcCCCcEEEEEeCCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML----AKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ivv~NK~Dl~ 103 (156)
....+.+|||||+.++...+..+++.+|++++|+|+++.. ++ ......+.. ....+.| +++++||+|+.
T Consensus 42 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~---~~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 114 (160)
T cd04156 42 KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEA---RL---DESQKELKHILKNEHIKGVP-VVLLANKQDLP 114 (160)
T ss_pred CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHH---HH---HHHHHHHHHHHhchhhcCCC-EEEEEECcccc
Confidence 3568999999999999988999999999999999997742 11 111111111 1124678 89999999985
Q ss_pred CcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 104 TVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.... ..+ +...+....+....+++++++||++|+|++++.+
T Consensus 115 ~~~~----~~~----i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 155 (160)
T cd04156 115 GALT----AEE----ITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFR 155 (160)
T ss_pred cCcC----HHH----HHHHcCCcccCCCCcEEEEecccccCCChHHHHH
Confidence 3211 112 2111111111111246899999999999987643
No 164
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.61 E-value=2.1e-15 Score=104.41 Aligned_cols=104 Identities=15% Similarity=0.142 Sum_probs=69.6
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
...+.+|||||++++...+...++.+|++|+|+|.++.. +|.....+...+.... .++| +++++||+|+......
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~-~~~p-iiiv~nK~Dl~~~~~~ 122 (166)
T cd00877 48 KIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRV---TYKNVPNWHRDLVRVC-GNIP-IVLCGNKVDIKDRKVK 122 (166)
T ss_pred EEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhC-CCCc-EEEEEEchhcccccCC
Confidence 467999999999998888888899999999999998743 2211122222222221 2678 8999999998521111
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. +...+.+. ...+++++||++|+|++++.
T Consensus 123 ~--------~~~~~~~~------~~~~~~e~Sa~~~~~v~~~f 151 (166)
T cd00877 123 A--------KQITFHRK------KNLQYYEISAKSNYNFEKPF 151 (166)
T ss_pred H--------HHHHHHHH------cCCEEEEEeCCCCCChHHHH
Confidence 1 11112222 24689999999999998764
No 165
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.61 E-value=3.4e-15 Score=102.38 Aligned_cols=111 Identities=22% Similarity=0.153 Sum_probs=72.0
Q ss_pred EEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCC
Q psy10355 25 FETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMD 101 (156)
Q Consensus 25 ~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~D 101 (156)
+..++ ..+.+|||||+++|...+..+++++|++++|+|.++.. +|.....+...+.... ..+.| +++++||+|
T Consensus 42 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~D 117 (163)
T cd04136 42 IEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQS---SFNDLQDLREQILRVKDTENVP-MVLVGNKCD 117 (163)
T ss_pred EEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECcc
Confidence 44444 56789999999999999999999999999999997742 2221122222222211 23577 899999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 102 DPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...... . .+....+.+.. +.+++++||++|.|++++.
T Consensus 118 l~~~~~~--~----~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04136 118 LEDERVV--S----REEGQALARQW------GCPFYETSAKSKINVDEVF 155 (163)
T ss_pred cccccee--c----HHHHHHHHHHc------CCeEEEecCCCCCCHHHHH
Confidence 7532110 0 11122222322 3689999999999998764
No 166
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.60 E-value=5.5e-15 Score=123.07 Aligned_cols=117 Identities=21% Similarity=0.213 Sum_probs=83.6
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHH----------HHhhh--hcCCEEEEEEeCCCCccccccCCCcchHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPN----------MIGGT--AQADLAVLVISARKGEFETGFDRGGQTRE 80 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~----------~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~ 80 (156)
.+|+|++.+...+.+++..+.+|||||+.++... ...++ ..+|++++|+|++... +...
T Consensus 33 ~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le---------r~l~ 103 (772)
T PRK09554 33 WAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE---------RNLY 103 (772)
T ss_pred CCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcch---------hhHH
Confidence 4799999999999999999999999999876421 11222 3789999999997743 2333
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 81 HAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 81 ~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
...++.+.++| +++++||+|+........+.+. + .+.+ +.|++++||++|+|++++++
T Consensus 104 l~~ql~e~giP-vIvVlNK~Dl~~~~~i~id~~~----L---~~~L------G~pVvpiSA~~g~GIdeL~~ 161 (772)
T PRK09554 104 LTLQLLELGIP-CIVALNMLDIAEKQNIRIDIDA----L---SARL------GCPVIPLVSTRGRGIEALKL 161 (772)
T ss_pred HHHHHHHcCCC-EEEEEEchhhhhccCcHHHHHH----H---HHHh------CCCEEEEEeecCCCHHHHHH
Confidence 44566677899 8999999997532221112222 2 2233 46899999999999887653
No 167
>PLN03110 Rab GTPase; Provisional
Probab=99.60 E-value=5.9e-15 Score=106.46 Aligned_cols=124 Identities=17% Similarity=0.064 Sum_probs=79.7
Q ss_pred hhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC
Q psy10355 12 REKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
..+.+..+.....+..++ ..+.+|||||++++...+..+++.++++|+|+|+++.. +|.....|...+......+
T Consensus 41 ~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~ 117 (216)
T PLN03110 41 SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ---TFDNVQRWLRELRDHADSN 117 (216)
T ss_pred CCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChH---HHHHHHHHHHHHHHhCCCC
Confidence 334444555445555554 57999999999999999999999999999999997743 2221122322222222246
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+| +++++||+|+....... . +....+.... .++++++||++|.|++++.
T Consensus 118 ~p-iiiv~nK~Dl~~~~~~~---~---~~~~~l~~~~------~~~~~e~SA~~g~~v~~lf 166 (216)
T PLN03110 118 IV-IMMAGNKSDLNHLRSVA---E---EDGQALAEKE------GLSFLETSALEATNVEKAF 166 (216)
T ss_pred Ce-EEEEEEChhcccccCCC---H---HHHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 77 89999999974321110 0 1112222222 4689999999999998753
No 168
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.60 E-value=7.5e-15 Score=101.40 Aligned_cols=120 Identities=15% Similarity=0.063 Sum_probs=77.4
Q ss_pred ceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcE
Q psy10355 16 KTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHL 93 (156)
Q Consensus 16 ~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (156)
++.+.....+.+.+ ..+.+|||||+.++...+..+++.+|++++|+|++++. +|.....+...+......+.| +
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~~-~ 115 (169)
T cd04114 40 IGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEE---SFRCLPEWLREIEQYANNKVI-T 115 (169)
T ss_pred eeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhCCCCCe-E
Confidence 33445555566665 56899999999999988899999999999999997643 111112233333333334677 7
Q ss_pred EEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 94 VVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 94 ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++++||+|+...... .....+.+ .+. ...+++++||++|.|++++-
T Consensus 116 i~v~NK~D~~~~~~i---~~~~~~~~---~~~------~~~~~~~~Sa~~~~gv~~l~ 161 (169)
T cd04114 116 ILVGNKIDLAERREV---SQQRAEEF---SDA------QDMYYLETSAKESDNVEKLF 161 (169)
T ss_pred EEEEECccccccccc---CHHHHHHH---HHH------cCCeEEEeeCCCCCCHHHHH
Confidence 999999997532110 11111112 111 13689999999999998753
No 169
>PTZ00369 Ras-like protein; Provisional
Probab=99.60 E-value=4.7e-15 Score=104.72 Aligned_cols=106 Identities=17% Similarity=0.117 Sum_probs=70.3
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-HHcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-KTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.+|||||+++|...+..+++.+|++++|+|+++.. +|.....+...+... ...++| +++++||+|+.....
T Consensus 52 ~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~---s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~ 127 (189)
T PTZ00369 52 TCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRS---SFEEIASFREQILRVKDKDRVP-MILVGNKCDLDSERQ 127 (189)
T ss_pred EEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccc
Confidence 356889999999999999999999999999999998743 222122222222221 123667 899999999753210
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
. ...+ ...+.+.. +++++++||++|.|++++
T Consensus 128 i--~~~~----~~~~~~~~------~~~~~e~Sak~~~gi~~~ 158 (189)
T PTZ00369 128 V--STGE----GQELAKSF------GIPFLETSAKQRVNVDEA 158 (189)
T ss_pred c--CHHH----HHHHHHHh------CCEEEEeeCCCCCCHHHH
Confidence 0 0111 12222222 368999999999999864
No 170
>KOG0081|consensus
Probab=99.60 E-value=4.4e-15 Score=99.98 Aligned_cols=105 Identities=17% Similarity=0.111 Sum_probs=78.5
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhH
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSE 109 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~ 109 (156)
..+.+|||+|+++|.+.+...++.|=+.++++|.+. +.+|-...+|...++.-....-|.+|++.||.|+.. .
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~---eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~----~ 139 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTS---EQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED----Q 139 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccc---hHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh----h
Confidence 459999999999999999999999999999999988 445544455665554444445577999999999852 2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 110 ARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
. .....+...+..+.| .|+|++||.+|.|+++
T Consensus 140 R--~Vs~~qa~~La~kyg------lPYfETSA~tg~Nv~k 171 (219)
T KOG0081|consen 140 R--VVSEDQAAALADKYG------LPYFETSACTGTNVEK 171 (219)
T ss_pred h--hhhHHHHHHHHHHhC------CCeeeeccccCcCHHH
Confidence 1 112233445556554 6999999999999875
No 171
>KOG0467|consensus
Probab=99.60 E-value=1.4e-14 Score=117.23 Aligned_cols=91 Identities=21% Similarity=0.274 Sum_probs=85.3
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|..++|+.||+|+..+-..+..+++.+++||+|||-+|.....++.+-+|+++++||+.+|. -+++...++
T Consensus 46 fld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv-------~~qt~~vlr 118 (887)
T KOG0467|consen 46 FLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGV-------CSQTYAVLR 118 (887)
T ss_pred eccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeecccc-------chhHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999999999998 589999999
Q ss_pred HHHHcCCCcEEEEEeCCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl 102 (156)
++-..+.. .++|+||+|+
T Consensus 119 q~~~~~~~-~~lvinkidr 136 (887)
T KOG0467|consen 119 QAWIEGLK-PILVINKIDR 136 (887)
T ss_pred HHHHccCc-eEEEEehhhh
Confidence 88888888 6999999994
No 172
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.60 E-value=4.7e-15 Score=107.92 Aligned_cols=113 Identities=14% Similarity=0.118 Sum_probs=72.6
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCC-CcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR-GGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.||||||+++|...+..+++++|++++|+|.++.. +|.. ...|...+... ..+.| +|+|+||+|+.....
T Consensus 60 ~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~---Sf~~~~~~w~~~i~~~-~~~~p-iilVgNK~DL~~~~~ 134 (232)
T cd04174 60 RVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPE---TVDSALKKWKAEIMDY-CPSTR-ILLIGCKTDLRTDLS 134 (232)
T ss_pred EEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChH---HHHHHHHHHHHHHHHh-CCCCC-EEEEEECcccccccc
Confidence 366999999999999999999999999999999998743 3321 12333333221 13567 899999999742100
Q ss_pred h------HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCC-CCccCC
Q psy10355 108 S------EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEK-NPLLLG 151 (156)
Q Consensus 108 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~-gi~~l~ 151 (156)
. ........++...+.+..++ .++++|||++|+ |++++-
T Consensus 135 ~~~~l~~~~~~~Vs~~e~~~~a~~~~~-----~~~~EtSAktg~~~V~e~F 180 (232)
T cd04174 135 TLMELSNQKQAPISYEQGCALAKQLGA-----EVYLECSAFTSEKSIHSIF 180 (232)
T ss_pred hhhhhccccCCcCCHHHHHHHHHHcCC-----CEEEEccCCcCCcCHHHHH
Confidence 0 00000011234455555532 268999999998 787653
No 173
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.60 E-value=9.1e-15 Score=104.12 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=77.7
Q ss_pred cCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCC
Q psy10355 14 KGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVK 91 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (156)
+.++.+.....+..++ ..+.+|||||++.+...+..++++++++++|+|+++.. +|.....+...+.. .....|
T Consensus 37 ~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~---s~~~~~~~~~~i~~-~~~~~p 112 (199)
T cd04110 37 TTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGE---SFVNVKRWLQEIEQ-NCDDVC 112 (199)
T ss_pred ccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHH---HHHHHHHHHHHHHH-hCCCCC
Confidence 3444444444555544 46899999999999999999999999999999998743 22211222222211 112466
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++++||+|+....... .++...+.+.. +++++++||++|.|++++.
T Consensus 113 -iivVgNK~Dl~~~~~~~------~~~~~~~~~~~------~~~~~e~Sa~~~~gi~~lf 159 (199)
T cd04110 113 -KVLVGNKNDDPERKVVE------TEDAYKFAGQM------GISLFETSAKENINVEEMF 159 (199)
T ss_pred -EEEEEECcccccccccC------HHHHHHHHHHc------CCEEEEEECCCCcCHHHHH
Confidence 89999999985321100 11222333333 3689999999999998764
No 174
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.59 E-value=1.7e-14 Score=113.83 Aligned_cols=115 Identities=21% Similarity=0.237 Sum_probs=85.9
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcC--------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKS--------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~--------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.+|+|.+.....+.+++..+.+|||||+.. +...+..+++.+|++++|+|+..+. .....+...+
T Consensus 32 ~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~-------~~~~~~~~~~ 104 (435)
T PRK00093 32 TPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGL-------TPADEEIAKI 104 (435)
T ss_pred CCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCC-------CHHHHHHHHH
Confidence 578999999999999999999999999987 3445677889999999999998865 2444556666
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...+.| +++++||+|+... . . ...++ ...++ ..++++||++|.|++++.
T Consensus 105 l~~~~~p-iilv~NK~D~~~~---~---~----~~~~~-~~lg~-----~~~~~iSa~~g~gv~~l~ 154 (435)
T PRK00093 105 LRKSNKP-VILVVNKVDGPDE---E---A----DAYEF-YSLGL-----GEPYPISAEHGRGIGDLL 154 (435)
T ss_pred HHHcCCc-EEEEEECccCccc---h---h----hHHHH-HhcCC-----CCCEEEEeeCCCCHHHHH
Confidence 7777888 8999999996421 1 1 11111 22332 246999999999998753
No 175
>KOG0088|consensus
Probab=99.59 E-value=4.5e-16 Score=104.67 Aligned_cols=108 Identities=17% Similarity=0.104 Sum_probs=83.1
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...++.||||+|+++|...-..||++++++++|+|.++ +.+|.....|...++.+....+- +++|.||+|+-.
T Consensus 60 ~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITD---rdSFqKVKnWV~Elr~mlGnei~-l~IVGNKiDLEe--- 132 (218)
T KOG0088|consen 60 CRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITD---RDSFQKVKNWVLELRTMLGNEIE-LLIVGNKIDLEE--- 132 (218)
T ss_pred ceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccc---hHHHHHHHHHHHHHHHHhCCeeE-EEEecCcccHHH---
Confidence 34679999999999999999999999999999999998 56777677787777777666666 899999999741
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+ .....++...+.+.. +..++.+||+...||.+|.
T Consensus 133 -e--R~Vt~qeAe~YAesv------GA~y~eTSAk~N~Gi~elF 167 (218)
T KOG0088|consen 133 -E--RQVTRQEAEAYAESV------GALYMETSAKDNVGISELF 167 (218)
T ss_pred -h--hhhhHHHHHHHHHhh------chhheecccccccCHHHHH
Confidence 1 122223344444444 3578999999999998763
No 176
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.59 E-value=2.8e-14 Score=98.43 Aligned_cols=121 Identities=14% Similarity=0.079 Sum_probs=73.6
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcCh-------H-HHHHhh-hhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSF-------V-PNMIGG-TAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~-------~-~~~~~~-~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..+.|.+.....+.+++..+.+|||||+.+. . .....+ ...+|++++|+|+++.. ++. .......+.
T Consensus 30 ~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~---~~~-~~~~~~~~~ 105 (168)
T cd01897 30 YPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETC---GYS-LEEQLSLFE 105 (168)
T ss_pred CCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCccc---ccc-hHHHHHHHH
Confidence 3466777777777778899999999998421 0 111112 23368999999997642 110 011122233
Q ss_pred HHHHc--CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 84 LAKTA--GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 84 ~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.+... +.| +++++||+|+... ....+ ...+.+. ..++++++||++|+|++++.+
T Consensus 106 ~l~~~~~~~p-vilv~NK~Dl~~~----~~~~~----~~~~~~~------~~~~~~~~Sa~~~~gi~~l~~ 161 (168)
T cd01897 106 EIKPLFKNKP-VIVVLNKIDLLTF----EDLSE----IEEEEEL------EGEEVLKISTLTEEGVDEVKN 161 (168)
T ss_pred HHHhhcCcCC-eEEEEEccccCch----hhHHH----HHHhhhh------ccCceEEEEecccCCHHHHHH
Confidence 33333 677 8999999998532 11111 1111111 246899999999999988753
No 177
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.59 E-value=9.7e-15 Score=100.36 Aligned_cols=106 Identities=18% Similarity=0.122 Sum_probs=70.1
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-HHcCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-KTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+...+... ...+.| +++++||+|+......
T Consensus 48 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~~~~~ 123 (164)
T smart00173 48 CLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQ---SFEEIKKFREQILRVKDRDDVP-IVLVGNKCDLESERVV 123 (164)
T ss_pred EEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceE
Confidence 57889999999999999999999999999999997642 121112222222211 123567 8999999998532111
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. .+....+.+.. +.+++++||++|.|++++.
T Consensus 124 ~------~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~ 154 (164)
T smart00173 124 S------TEEGKELARQW------GCPFLETSAKERVNVDEAF 154 (164)
T ss_pred c------HHHHHHHHHHc------CCEEEEeecCCCCCHHHHH
Confidence 1 11122222322 3689999999999998764
No 178
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.59 E-value=2.2e-14 Score=119.24 Aligned_cols=117 Identities=21% Similarity=0.234 Sum_probs=86.9
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcC--------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKS--------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~--------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
+..+|+|.+.......+++..+.+|||||+.. +...+..+++.+|++|+|+|++.+. ........
T Consensus 304 ~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~-------~~~d~~i~ 376 (712)
T PRK09518 304 EDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGL-------TSTDERIV 376 (712)
T ss_pred cCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCC-------CHHHHHHH
Confidence 44689999999999999999999999999863 4556777889999999999998865 24444556
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+...+.| +++|+||+|+... . .. ...+. ..++ ...+++||++|.|+++|.
T Consensus 377 ~~Lr~~~~p-vIlV~NK~D~~~~---~---~~----~~~~~-~lg~-----~~~~~iSA~~g~GI~eLl 428 (712)
T PRK09518 377 RMLRRAGKP-VVLAVNKIDDQAS---E---YD----AAEFW-KLGL-----GEPYPISAMHGRGVGDLL 428 (712)
T ss_pred HHHHhcCCC-EEEEEECcccccc---h---hh----HHHHH-HcCC-----CCeEEEECCCCCCchHHH
Confidence 667777888 8999999997521 0 00 11111 2233 135799999999998764
No 179
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.59 E-value=1.6e-14 Score=99.23 Aligned_cols=107 Identities=14% Similarity=0.083 Sum_probs=69.7
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
....+.+|||||++.+...+..+++.+|++++|+|.++.. +|.....+.+.+... ..+.| +++|+||+|+.....
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~-~~~~p-~ilv~nK~Dl~~~~~ 124 (164)
T cd04101 50 NTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKA---SFENCSRWVNKVRTA-SKHMP-GVLVGNKMDLADKAE 124 (164)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHH---HHHHHHHHHHHHHHh-CCCCC-EEEEEECcccccccC
Confidence 3478999999999999888899999999999999997742 111111222222111 13577 899999999853211
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
... .. ...+.... +.+++++||++|.|++++.
T Consensus 125 ~~~--~~----~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 156 (164)
T cd04101 125 VTD--AQ----AQAFAQAN------QLKFFKTSALRGVGYEEPF 156 (164)
T ss_pred CCH--HH----HHHHHHHc------CCeEEEEeCCCCCChHHHH
Confidence 110 01 11111221 4689999999999998764
No 180
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.59 E-value=8.4e-15 Score=103.23 Aligned_cols=107 Identities=18% Similarity=0.062 Sum_probs=70.3
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
...+.+|||||++++...+...++++|++++|+|+++.. +|.....+...+......+.| +++++||+|+......
T Consensus 48 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~---s~~~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~~~~~v 123 (188)
T cd04125 48 IIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQE---SFENLKFWINEINRYARENVI-KVIVANKSDLVNNKVV 123 (188)
T ss_pred EEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhCCCCCe-EEEEEECCCCcccccC
Confidence 356899999999999989999999999999999998743 222222222222222223456 8999999997532111
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. .. ....+.+.. +++++++||++|.|++++.
T Consensus 124 ~--~~----~~~~~~~~~------~~~~~evSa~~~~~i~~~f 154 (188)
T cd04125 124 D--SN----IAKSFCDSL------NIPFFETSAKQSINVEEAF 154 (188)
T ss_pred C--HH----HHHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 0 01 111222222 3589999999999998653
No 181
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.58 E-value=1.1e-14 Score=102.56 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=78.2
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH----HHcCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA----KTAGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 92 (156)
|.......+.+++..+.+|||||+.++...+..+++++|++++|+|+++.. +|. .....+... ...+.|
T Consensus 50 T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~---s~~---~~~~~~~~i~~~~~~~~~p- 122 (190)
T cd00879 50 TLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPE---RFQ---ESKEELDSLLSDEELANVP- 122 (190)
T ss_pred ccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHH---HHH---HHHHHHHHHHcCccccCCC-
Confidence 445556677788899999999999999888899999999999999997642 111 111121111 124577
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCC----------CCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF----------NAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++++||+|+..... .+++++.+ ..... .....++++++||++|+|++++.
T Consensus 123 vivv~NK~Dl~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~ 183 (190)
T cd00879 123 FLILGNKIDLPGAVS----EEELRQAL----GLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAF 183 (190)
T ss_pred EEEEEeCCCCCCCcC----HHHHHHHh----CcccccccccccccccCceeEEEEEeEecCCCChHHHH
Confidence 899999999853211 12222222 11110 00123579999999999998753
No 182
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.58 E-value=8.8e-15 Score=99.20 Aligned_cols=121 Identities=17% Similarity=0.144 Sum_probs=76.9
Q ss_pred CceeeeeeEEEEe--CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCc
Q psy10355 15 GKTVEVGRAYFET--DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKH 92 (156)
Q Consensus 15 g~t~~~~~~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (156)
..+.......+.. ....+.+||+||+..+...+..+++++|++++|+|+++.. ++.....+...+......+.|
T Consensus 32 t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~p- 107 (159)
T cd00154 32 TIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRE---SFENLDKWLKELKEYAPENIP- 107 (159)
T ss_pred ceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhCCCCCc-
Confidence 3333344444444 4477999999999999999999999999999999997732 111111122211111112467
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++++||+|+.... . ...+++..+.... ..+++++||++|.|++++.
T Consensus 108 ~ivv~nK~D~~~~~--~----~~~~~~~~~~~~~------~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 108 IILVGNKIDLEDQR--Q----VSTEEAQQFAKEN------GLLFFETSAKTGENVEELF 154 (159)
T ss_pred EEEEEEcccccccc--c----ccHHHHHHHHHHc------CCeEEEEecCCCCCHHHHH
Confidence 89999999975111 1 1122233333332 4689999999999998764
No 183
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.58 E-value=2e-14 Score=119.48 Aligned_cols=124 Identities=18% Similarity=0.152 Sum_probs=87.7
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcC---------hHH--HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKS---------FVP--NMIGGTAQADLAVLVISARKGEFETGFDRGGQTRE 80 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~---------~~~--~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~ 80 (156)
...|+|.+.....+.+++..+.+|||||+.+ +.. ....+++.+|++++|+|++++. ..+...
T Consensus 480 ~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~-------s~~~~~ 552 (712)
T PRK09518 480 DLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPI-------SEQDLK 552 (712)
T ss_pred CCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCC-------CHHHHH
Confidence 3578999998888889999999999999743 111 1345678999999999999876 345555
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 81 HAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 81 ~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.+..+...+.| +++|+||+|+... ...+.+++.+...+... ...+++++||++|.|+++|.+
T Consensus 553 i~~~~~~~~~p-iIiV~NK~DL~~~----~~~~~~~~~~~~~l~~~-----~~~~ii~iSAktg~gv~~L~~ 614 (712)
T PRK09518 553 VMSMAVDAGRA-LVLVFNKWDLMDE----FRRQRLERLWKTEFDRV-----TWARRVNLSAKTGWHTNRLAP 614 (712)
T ss_pred HHHHHHHcCCC-EEEEEEchhcCCh----hHHHHHHHHHHHhccCC-----CCCCEEEEECCCCCCHHHHHH
Confidence 66666667888 8999999998632 11223333333222221 235789999999999987643
No 184
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.58 E-value=6.1e-15 Score=103.38 Aligned_cols=112 Identities=14% Similarity=0.105 Sum_probs=71.6
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC-cchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG-GQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.+|||||+++|......+++++|++|+|+|.++.. +|... ..|...+... ..+.| +++|+||+|+.....
T Consensus 48 ~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~---Sf~~~~~~w~~~i~~~-~~~~~-iilVgnK~DL~~~~~ 122 (178)
T cd04131 48 RIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPE---TLDSVLKKWRGEIQEF-CPNTK-VLLVGCKTDLRTDLS 122 (178)
T ss_pred EEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChh---hHHHHHHHHHHHHHHH-CCCCC-EEEEEEChhhhcChh
Confidence 356899999999999888888999999999999998743 33321 2333333222 13567 899999999842100
Q ss_pred hHHHH------HHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCC-CccC
Q psy10355 108 SEARY------NECKDKILPYLKKLGFNAAKDLSFMPCSGELEKN-PLLL 150 (156)
Q Consensus 108 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~g-i~~l 150 (156)
....+ .-..++...+.+..++ .+++++||++|+| ++++
T Consensus 123 ~~~~~~~~~~~~v~~~e~~~~a~~~~~-----~~~~E~SA~~~~~~v~~~ 167 (178)
T cd04131 123 TLMELSHQRQAPVSYEQGCAIAKQLGA-----EIYLECSAFTSEKSVRDI 167 (178)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhCC-----CEEEECccCcCCcCHHHH
Confidence 00000 0011223344444432 3799999999995 8765
No 185
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.57 E-value=1.5e-14 Score=101.78 Aligned_cols=122 Identities=18% Similarity=0.129 Sum_probs=77.8
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH----HHcCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA----KTAGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 92 (156)
|.......+..++.++.+|||||+.++...+..+++++|++++|+|+++.. ++ ......+..+ ...+.|
T Consensus 48 t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~---~~---~~~~~~l~~l~~~~~~~~~p- 120 (184)
T smart00178 48 TQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKE---RF---AESKRELDALLSDEELATVP- 120 (184)
T ss_pred ccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHH---HH---HHHHHHHHHHHcChhhcCCC-
Confidence 344445566678899999999999999999999999999999999997642 11 1111122211 124677
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHc---CCCCCCCCeEEEeecccCCCCccC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKL---GFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+++++||+|+.... ..+++.+.+.- .+.. +......+.++++||++|+|++++
T Consensus 121 iliv~NK~Dl~~~~----~~~~i~~~l~l-~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~ 176 (184)
T smart00178 121 FLILGNKIDAPYAA----SEDELRYALGL-TNTTGSKGKVGVRPLEVFMCSVVRRMGYGEG 176 (184)
T ss_pred EEEEEeCccccCCC----CHHHHHHHcCC-CcccccccccCCceeEEEEeecccCCChHHH
Confidence 89999999975321 12233332210 0000 000012457999999999999864
No 186
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.56 E-value=1.1e-14 Score=101.08 Aligned_cols=112 Identities=10% Similarity=0.104 Sum_probs=70.5
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||++++...+..+++++|++|+|+|.++.. +|+... .+...+.. ...+.| +++++||+|+......
T Consensus 46 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~~i~~-~~~~~p-iilv~nK~Dl~~~~~~ 120 (174)
T smart00174 46 VELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPA---SFENVKEKWYPEVKH-FCPNTP-IILVGTKLDLREDKST 120 (174)
T ss_pred EEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHh-hCCCCC-EEEEecChhhhhChhh
Confidence 46999999999999888888899999999999997642 221111 12221111 123677 8999999998531110
Q ss_pred HHHHH------HHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYN------ECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+. ...++...+.+..+ ..+++++||++|.|++++.
T Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~v~~lf 164 (174)
T smart00174 121 LRELSKQKQEPVTYEQGEALAKRIG-----AVKYLECSALTQEGVREVF 164 (174)
T ss_pred hhhhhcccCCCccHHHHHHHHHHcC-----CcEEEEecCCCCCCHHHHH
Confidence 00000 00122333444443 2488999999999998764
No 187
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.56 E-value=4.5e-14 Score=97.51 Aligned_cols=122 Identities=17% Similarity=0.100 Sum_probs=75.2
Q ss_pred cCceeeeeeEEEEeCCe-EEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCCC-ccccccCCCcchHHHHHH
Q psy10355 14 KGKTVEVGRAYFETDRK-HFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARKG-EFETGFDRGGQTREHAML 84 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~-~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~~-~~~~~~~~~~~~~~~~~~ 84 (156)
.+.|.+.....+..++. .+.+|||||+.+ +...+...+..+|++++|+|+++. .. +.....+.+.+..
T Consensus 31 ~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~---~~~~~~~~~~l~~ 107 (170)
T cd01898 31 PFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDP---VEDYKTIRNELEL 107 (170)
T ss_pred CccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCH---HHHHHHHHHHHHH
Confidence 45677777777777776 999999999742 233444556679999999999875 21 0001112222211
Q ss_pred HH--HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AK--TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~--~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.. ..+.| +++|+||+|+..... . .+.+..+.... ...+++++||++|.|++++.
T Consensus 108 ~~~~~~~~p-~ivv~NK~Dl~~~~~----~---~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~ 163 (170)
T cd01898 108 YNPELLEKP-RIVVLNKIDLLDEEE----L---FELLKELLKEL-----WGKPVFPISALTGEGLDELL 163 (170)
T ss_pred hCccccccc-cEEEEEchhcCCchh----h---HHHHHHHHhhC-----CCCCEEEEecCCCCCHHHHH
Confidence 11 12567 799999999853211 1 11222223221 14588999999999998764
No 188
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.56 E-value=2e-14 Score=98.46 Aligned_cols=108 Identities=18% Similarity=0.167 Sum_probs=72.0
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.+|||||+.++...+..+++.+|++++|+|..+.. +|.....+...+.... ..++| +++|+||+|+.....
T Consensus 47 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~~ 122 (164)
T cd04139 47 DVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDME---SFTATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKRQ 122 (164)
T ss_pred EEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEEccccccccc
Confidence 357999999999999999999999999999999987632 1211122323222221 24678 899999999864110
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
. ... ....+.+.. +.+++++||++|+|++++.+
T Consensus 123 ~--~~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 123 V--SSE----EAANLARQW------GVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred c--CHH----HHHHHHHHh------CCeEEEeeCCCCCCHHHHHH
Confidence 0 011 122223333 35899999999999988653
No 189
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.56 E-value=4.9e-14 Score=98.53 Aligned_cols=118 Identities=22% Similarity=0.228 Sum_probs=80.7
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 92 (156)
|.+.....+.+++..+.+||.+|+..+...|..++.++|++|||+|+++.. . ..+..+.+..+. ..+.|
T Consensus 45 T~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~---~---l~e~~~~L~~ll~~~~~~~~p- 117 (175)
T PF00025_consen 45 TIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPE---R---LQEAKEELKELLNDPELKDIP- 117 (175)
T ss_dssp ESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGG---G---HHHHHHHHHHHHTSGGGTTSE-
T ss_pred ccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEecccce---e---ecccccchhhhcchhhcccce-
Confidence 445556667789999999999999999999999999999999999998742 0 112222222222 13567
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
+++++||.|+..+.. ..+ +...+....+.....+.++++||++|+|+.+
T Consensus 118 iLIl~NK~D~~~~~~----~~~----i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e 166 (175)
T PF00025_consen 118 ILILANKQDLPDAMS----EEE----IKEYLGLEKLKNKRPWSVFSCSAKTGEGVDE 166 (175)
T ss_dssp EEEEEESTTSTTSST----HHH----HHHHTTGGGTTSSSCEEEEEEBTTTTBTHHH
T ss_pred EEEEeccccccCcch----hhH----HHhhhhhhhcccCCceEEEeeeccCCcCHHH
Confidence 899999999864322 122 2222222222212467899999999999865
No 190
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.56 E-value=3.2e-14 Score=98.71 Aligned_cols=126 Identities=13% Similarity=0.095 Sum_probs=76.9
Q ss_pred HHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHH-HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 9 RQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVP-NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 9 ~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~-~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
+.+....++.+.....+.+++ ..+.+|||||++++.. .+..+++++|++++|+|+++.. +|.....+...+...
T Consensus 28 ~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~ 104 (170)
T cd04115 28 PERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMA---SFHSLPSWIEECEQH 104 (170)
T ss_pred CCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHH---HHHhHHHHHHHHHHh
Confidence 334444555555555566555 6799999999998864 5777889999999999998743 222222233222221
Q ss_pred H-HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeeccc---CCCCccC
Q psy10355 86 K-TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGEL---EKNPLLL 150 (156)
Q Consensus 86 ~-~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~---g~gi~~l 150 (156)
. ..++| +++++||+|+....... .+....+.+.. .++++++||++ +.|++++
T Consensus 105 ~~~~~~p-~iiv~nK~Dl~~~~~~~------~~~~~~~~~~~------~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 105 SLPNEVP-RILVGNKCDLREQIQVP------TDLAQRFADAH------SMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred cCCCCCC-EEEEEECccchhhcCCC------HHHHHHHHHHc------CCcEEEEeccCCcCCCCHHHH
Confidence 1 23578 89999999975321111 01112222222 46899999999 5555543
No 191
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.56 E-value=3.3e-14 Score=101.11 Aligned_cols=116 Identities=22% Similarity=0.214 Sum_probs=73.2
Q ss_pred eEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-HHcCCCcEEEEEe
Q psy10355 22 RAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-KTAGVKHLVVLIN 98 (156)
Q Consensus 22 ~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ivv~N 98 (156)
...+.+.+ ..+.+|||||+.+|...+..+++.+|++++|+|+++.. +|.....+...+... ...++| +++++|
T Consensus 37 ~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~N 112 (198)
T cd04147 37 RKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPE---SFEEVERLREEILEVKEDKFVP-IVVVGN 112 (198)
T ss_pred eEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-EEEEEE
Confidence 34455555 67899999999999888888999999999999997743 111111222222211 124678 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+|+..... ........ .... .. .+.+++++||++|.|++++.
T Consensus 113 K~Dl~~~~~-~v~~~~~~----~~~~-~~----~~~~~~~~Sa~~g~gv~~l~ 155 (198)
T cd04147 113 KADSLEEER-QVPAKDAL----STVE-LD----WNCGFVETSAKDNENVLEVF 155 (198)
T ss_pred ccccccccc-cccHHHHH----HHHH-hh----cCCcEEEecCCCCCCHHHHH
Confidence 999853211 10011111 1111 11 13588999999999998764
No 192
>PRK00089 era GTPase Era; Reviewed
Probab=99.56 E-value=1.3e-13 Score=103.67 Aligned_cols=120 Identities=17% Similarity=0.112 Sum_probs=79.7
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcCh--------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSF--------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~--------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.+++|.......+..++.++.++||||+.+. ...+..++..+|++++|+|++++. .......+..
T Consensus 36 ~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~-------~~~~~~i~~~ 108 (292)
T PRK00089 36 KPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKI-------GPGDEFILEK 108 (292)
T ss_pred CCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCC-------ChhHHHHHHH
Confidence 3455555555555556689999999998553 334556778999999999998754 2334455555
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...+.| +++|+||+|+... . ..+...+..+.+..+ ..+++++||++|.|++.|.
T Consensus 109 l~~~~~p-vilVlNKiDl~~~---~---~~l~~~~~~l~~~~~-----~~~i~~iSA~~~~gv~~L~ 163 (292)
T PRK00089 109 LKKVKTP-VILVLNKIDLVKD---K---EELLPLLEELSELMD-----FAEIVPISALKGDNVDELL 163 (292)
T ss_pred HhhcCCC-EEEEEECCcCCCC---H---HHHHHHHHHHHhhCC-----CCeEEEecCCCCCCHHHHH
Confidence 5555678 8999999998621 1 112222222222222 3589999999999988763
No 193
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.56 E-value=2.9e-14 Score=102.50 Aligned_cols=122 Identities=15% Similarity=0.092 Sum_probs=76.4
Q ss_pred cCceeeeeeEEEEeC---CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cC
Q psy10355 14 KGKTVEVGRAYFETD---RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AG 89 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 89 (156)
++++.+.....+... ...+.+|||||++++...+..+++++|++++|+|.++.. +|.....+...+..... .+
T Consensus 33 ~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~---Sf~~l~~~~~~i~~~~~~~~ 109 (211)
T cd04111 33 PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRE---SFEHVHDWLEEARSHIQPHR 109 (211)
T ss_pred ceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCC
Confidence 344444444444442 357999999999999998999999999999999998742 22222222222221111 23
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.| +++++||+|+...... ..++...+.+.. +++++++||++|+|++++.
T Consensus 110 ~~-iilvgNK~Dl~~~~~v------~~~~~~~~~~~~------~~~~~e~Sak~g~~v~e~f 158 (211)
T cd04111 110 PV-FILVGHKCDLESQRQV------TREEAEKLAKDL------GMKYIETSARTGDNVEEAF 158 (211)
T ss_pred Ce-EEEEEEcccccccccc------CHHHHHHHHHHh------CCEEEEEeCCCCCCHHHHH
Confidence 44 7889999997531110 011122233333 3689999999999998764
No 194
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.56 E-value=1.4e-14 Score=102.95 Aligned_cols=110 Identities=11% Similarity=-0.029 Sum_probs=68.0
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.+|||||+++. ....+++++|++++|+|.++.. +|+... .|...+... ..+.| +++|+||+|+.....
T Consensus 65 ~v~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~---Sf~~~~~~w~~~i~~~-~~~~p-iilvgNK~DL~~~~~ 137 (195)
T cd01873 65 SVSLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPN---SLRNVKTMWYPEIRHF-CPRVP-VILVGCKLDLRYADL 137 (195)
T ss_pred EEEEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChh---HHHHHHHHHHHHHHHh-CCCCC-EEEEEEchhcccccc
Confidence 467999999999763 3456789999999999998743 232221 133322221 13567 899999999853100
Q ss_pred hHH-------------HHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 108 SEA-------------RYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 108 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
... ...-..++...+.+.. ++++++|||++|+|++++-
T Consensus 138 ~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~------~~~~~E~SAkt~~~V~e~F 188 (195)
T cd01873 138 DEVNRARRPLARPIKNADILPPETGRAVAKEL------GIPYYETSVVTQFGVKDVF 188 (195)
T ss_pred chhhhcccccccccccCCccCHHHHHHHHHHh------CCEEEEcCCCCCCCHHHHH
Confidence 000 0000112233444444 4589999999999998753
No 195
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.55 E-value=1.8e-14 Score=104.23 Aligned_cols=132 Identities=14% Similarity=0.136 Sum_probs=78.1
Q ss_pred cHHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC-cchHHHHHH
Q psy10355 8 LRQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG-GQTREHAML 84 (156)
Q Consensus 8 ~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~-~~~~~~~~~ 84 (156)
++.+..+.+..... ..+..++ ..+.||||||++.|...+..+++++|++|+|+|.++.. +|+.. ..|...+.
T Consensus 26 f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~---Sf~~i~~~w~~~~~- 100 (222)
T cd04173 26 YPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPE---TLDSVLKKWQGETQ- 100 (222)
T ss_pred CCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHH---HHHHHHHHHHHHHH-
Confidence 34444444433322 3444444 56899999999999999999999999999999998743 22211 11111111
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHH------HHHHHHHHHHHHcCCCCCCCCeEEEeecccCCC-CccC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYN------ECKDKILPYLKKLGFNAAKDLSFMPCSGELEKN-PLLL 150 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~g-i~~l 150 (156)
....+.| +++|+||+|+........... -..++...+.++.+ ..+++++||++++| ++++
T Consensus 101 ~~~~~~p-iiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~-----~~~y~E~SAk~~~~~V~~~ 167 (222)
T cd04173 101 EFCPNAK-VVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVG-----AVSYVECSSRSSERSVRDV 167 (222)
T ss_pred hhCCCCC-EEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcC-----CCEEEEcCCCcCCcCHHHH
Confidence 1124677 899999999853110000000 00122333334443 24899999999985 8764
No 196
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.55 E-value=2e-14 Score=105.69 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=74.2
Q ss_pred EEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH---------HcCCC
Q psy10355 23 AYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK---------TAGVK 91 (156)
Q Consensus 23 ~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 91 (156)
..+..++ +.+.||||||+++|......++..+|++|+|+|.++. .+|+....+.+.+.... ..+.|
T Consensus 39 k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~---~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~p 115 (247)
T cd04143 39 KLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNR---ESFEEVCRLREQILETKSCLKNKTKENVKIP 115 (247)
T ss_pred EEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCH---HHHHHHHHHHHHHHHhhcccccccccCCCCc
Confidence 3444444 6789999999999988888888999999999999873 23332233333332221 13567
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|+++||+|+.... ....++ +..++... ..++++++||++|.|++++.
T Consensus 116 -iIivgNK~Dl~~~~--~v~~~e----i~~~~~~~-----~~~~~~evSAktg~gI~elf 163 (247)
T cd04143 116 -MVICGNKADRDFPR--EVQRDE----VEQLVGGD-----ENCAYFEVSAKKNSNLDEMF 163 (247)
T ss_pred -EEEEEECccchhcc--ccCHHH----HHHHHHhc-----CCCEEEEEeCCCCCCHHHHH
Confidence 89999999985311 111122 33332211 24689999999999998763
No 197
>PLN03118 Rab family protein; Provisional
Probab=99.55 E-value=1.9e-14 Score=103.29 Aligned_cols=121 Identities=17% Similarity=0.130 Sum_probs=75.6
Q ss_pred CceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcc-hHHHHHHHH-HcCC
Q psy10355 15 GKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQ-TREHAMLAK-TAGV 90 (156)
Q Consensus 15 g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~ 90 (156)
.++.+.....+..++ ..+.+|||||+++|...+..+++.+|++|+|+|+++.. +|..... +...+.... ..+.
T Consensus 45 t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~---sf~~~~~~~~~~~~~~~~~~~~ 121 (211)
T PLN03118 45 TIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRE---TFTNLSDVWGKEVELYSTNQDC 121 (211)
T ss_pred CceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhcCCCCC
Confidence 333444444444443 57899999999999999999999999999999998743 1111111 111111111 1345
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
| +++|+||+|+...... . .++...+.... .++++++||++|.|++++.
T Consensus 122 ~-~ilv~NK~Dl~~~~~i--~----~~~~~~~~~~~------~~~~~e~SAk~~~~v~~l~ 169 (211)
T PLN03118 122 V-KMLVGNKVDRESERDV--S----REEGMALAKEH------GCLFLECSAKTRENVEQCF 169 (211)
T ss_pred C-EEEEEECccccccCcc--C----HHHHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 7 7999999998532111 0 11122222332 3589999999999998764
No 198
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.55 E-value=2e-14 Score=101.62 Aligned_cols=115 Identities=12% Similarity=0.025 Sum_probs=71.7
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.+..++ ..+.+|||||++++...+..+++++|++++|+|+++.. +|.....+...+... ..+.| +++|+||+|
T Consensus 42 ~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~---s~~~~~~~~~~i~~~-~~~~p-iilv~nK~D 116 (193)
T cd04118 42 RMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSS---SFERAKFWVKELQNL-EEHCK-IYLCGTKSD 116 (193)
T ss_pred EEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHH---HHHHHHHHHHHHHhc-CCCCC-EEEEEEccc
Confidence 344444 45779999999999888888899999999999997642 111111122222111 12577 899999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 102 DPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+........... .+++..+.... +.+++++||++|.|++.|.
T Consensus 117 l~~~~~~~~~v~--~~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~ 158 (193)
T cd04118 117 LIEQDRSLRQVD--FHDVQDFADEI------KAQHFETSSKTGQNVDELF 158 (193)
T ss_pred ccccccccCccC--HHHHHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 753211110010 11233333332 3688999999999998654
No 199
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.55 E-value=7.3e-14 Score=106.67 Aligned_cols=122 Identities=15% Similarity=0.061 Sum_probs=77.8
Q ss_pred cCceeeeeeEEEEe-CCeEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 14 KGKTVEVGRAYFET-DRKHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 14 ~g~t~~~~~~~~~~-~~~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
+++|..+....+.+ ++..|++|||||..+ +.......+..++++++|+|+++.. .++....+...+...
T Consensus 189 pfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~---s~e~~~~~~~EL~~~ 265 (335)
T PRK12299 189 PFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVD---PVEDYKTIRNELEKY 265 (335)
T ss_pred CCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCC---CHHHHHHHHHHHHHh
Confidence 57899999998888 567899999999743 3345566677899999999997632 111111122222211
Q ss_pred HH--cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 86 KT--AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 86 ~~--~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.. .+.| +++|+||+|+..... .. .+....+++.. .++++++||++++|+++|.
T Consensus 266 ~~~L~~kp-~IIV~NKiDL~~~~~----~~--~~~~~~~~~~~------~~~i~~iSAktg~GI~eL~ 320 (335)
T PRK12299 266 SPELADKP-RILVLNKIDLLDEEE----ER--EKRAALELAAL------GGPVFLISAVTGEGLDELL 320 (335)
T ss_pred hhhcccCC-eEEEEECcccCCchh----HH--HHHHHHHHHhc------CCCEEEEEcCCCCCHHHHH
Confidence 11 3567 899999999863211 11 11122222222 3689999999999998764
No 200
>KOG0079|consensus
Probab=99.54 E-value=8.3e-15 Score=97.53 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=83.5
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEE
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLV 94 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (156)
|+...+.+..+..+..++.||||+|+++|...+..++++.+++++|+|.+.+. +|.....|.+.++.... .+| -+
T Consensus 42 GvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~E---SF~Nv~rWLeei~~ncd-sv~-~v 116 (198)
T KOG0079|consen 42 GVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGE---SFNNVKRWLEEIRNNCD-SVP-KV 116 (198)
T ss_pred eeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchh---hhHhHHHHHHHHHhcCc-ccc-ce
Confidence 34444444445555678999999999999999999999999999999998853 45444566665543332 467 59
Q ss_pred EEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 95 VLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 95 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+|.||.|.+.... -..+....+..+. ++.+|++||+..+|++..
T Consensus 117 LVGNK~d~~~Rrv------V~t~dAr~~A~~m------gie~FETSaKe~~NvE~m 160 (198)
T KOG0079|consen 117 LVGNKNDDPERRV------VDTEDARAFALQM------GIELFETSAKENENVEAM 160 (198)
T ss_pred ecccCCCCcccee------eehHHHHHHHHhc------CchheehhhhhcccchHH
Confidence 9999999764211 1112233344443 468899999999998763
No 201
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.54 E-value=4.4e-14 Score=97.65 Aligned_cols=118 Identities=19% Similarity=0.176 Sum_probs=74.2
Q ss_pred eeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCc
Q psy10355 19 EVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKH 92 (156)
Q Consensus 19 ~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 92 (156)
+.....+.+.+ ..+.+|||||+..+...+..+++++|++|+++|+.+.. +|.....+...+.... ..++|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p- 111 (172)
T cd01862 36 DFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPK---SFESLDSWRDEFLIQASPSDPENFP- 111 (172)
T ss_pred EEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCccCCCCce-
Confidence 33333445544 45789999999999999999999999999999997643 1111111111111111 12577
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++++||+|+..... ...+ .+..+++..+ ..+++++||++|.|++.+.
T Consensus 112 ~ilv~nK~Dl~~~~~--~~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l~ 159 (172)
T cd01862 112 FVVLGNKIDLEEKRQ--VSTK----KAQQWCQSNG-----NIPYFETSAKEAINVEQAF 159 (172)
T ss_pred EEEEEECcccccccc--cCHH----HHHHHHHHcC-----CceEEEEECCCCCCHHHHH
Confidence 899999999862111 0111 2233334332 3689999999999998764
No 202
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.54 E-value=6.5e-14 Score=106.77 Aligned_cols=124 Identities=16% Similarity=0.080 Sum_probs=77.1
Q ss_pred cCceeeeeeEEEEeCC-eEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 14 KGKTVEVGRAYFETDR-KHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~-~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
+++|..+....+.+++ ..+.+|||||+.+ +.......+..++++++|+|++.......++....+.+.+...
T Consensus 188 ~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~ 267 (329)
T TIGR02729 188 PFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKY 267 (329)
T ss_pred CCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHh
Confidence 4678888888888877 8999999999842 2334455567799999999997631000000001112222111
Q ss_pred H--HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 86 K--TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 86 ~--~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. ..+.| +++|+||+|+... ...+++. ..+.+.. +.+++++||++++|+++|.
T Consensus 268 ~~~l~~kp-~IIV~NK~DL~~~----~~~~~~~---~~l~~~~------~~~vi~iSAktg~GI~eL~ 321 (329)
T TIGR02729 268 SPELAEKP-RIVVLNKIDLLDE----EELAELL---KELKKAL------GKPVFPISALTGEGLDELL 321 (329)
T ss_pred hhhhccCC-EEEEEeCccCCCh----HHHHHHH---HHHHHHc------CCcEEEEEccCCcCHHHHH
Confidence 1 13567 7999999998632 1122222 2222222 3589999999999998864
No 203
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.53 E-value=2.9e-14 Score=100.74 Aligned_cols=112 Identities=18% Similarity=0.204 Sum_probs=70.8
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||+++|...+..+++.+|++++|+|.++.. +|.... .|...+.. ...+.| +++|+||+|+......
T Consensus 48 ~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~---sf~~~~~~~~~~i~~-~~~~~p-iilvgNK~Dl~~~~~~ 122 (189)
T cd04134 48 IELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPD---SLENVESKWLGEIRE-HCPGVK-LVLVALKCDLREARNE 122 (189)
T ss_pred EEEEEEECCCChhccccccccccCCCEEEEEEECCCHH---HHHHHHHHHHHHHHH-hCCCCC-EEEEEEChhhccChhh
Confidence 57999999999999888888899999999999998743 221111 12222221 123677 8999999998532111
Q ss_pred HHHHHH------HHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNE------CKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...... ..++...+.+..+ .++++++||++|.|++++-
T Consensus 123 ~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~SAk~~~~v~e~f 166 (189)
T cd04134 123 RDDLQRYGKHTISYEEGLAVAKRIN-----ALRYLECSAKLNRGVNEAF 166 (189)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHcC-----CCEEEEccCCcCCCHHHHH
Confidence 100000 0111223333332 3689999999999998753
No 204
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.53 E-value=4.4e-14 Score=97.62 Aligned_cols=111 Identities=17% Similarity=0.143 Sum_probs=70.6
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC-cchHHHHHHHHHcCCCcEEEEEeCCCCCCcc
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG-GQTREHAMLAKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
.+..+.+|||||+..+...+..+++.+|++++|+|+++.. +|+.. ..|...+... ..+.| +++|+||+|+....
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~---s~~~~~~~~~~~i~~~-~~~~p-viiv~nK~Dl~~~~ 119 (166)
T cd01893 45 ERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPS---TLERIRTKWLPLIRRL-GVKVP-IILVGNKSDLRDGS 119 (166)
T ss_pred CeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHH---HHHHHHHHHHHHHHHh-CCCCC-EEEEEEchhccccc
Confidence 5578999999999988888888889999999999997743 11110 0122222221 23567 89999999985422
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
... .+++.+..+.+... ...+++++||++|.|++++.
T Consensus 120 ~~~----~~~~~~~~~~~~~~----~~~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 120 SQA----GLEEEMLPIMNEFR----EIETCVECSAKTLINVSEVF 156 (166)
T ss_pred chh----HHHHHHHHHHHHHh----cccEEEEeccccccCHHHHH
Confidence 110 11222222222221 01378999999999998764
No 205
>KOG1144|consensus
Probab=99.53 E-value=4.2e-14 Score=114.35 Aligned_cols=111 Identities=29% Similarity=0.417 Sum_probs=83.7
Q ss_pred EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh--
Q psy10355 31 HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS-- 108 (156)
Q Consensus 31 ~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~-- 108 (156)
.+.+||||||+.|.....++...||.+|+|+|...|+ .+++.+.+.+++..+.| ||+++||+|+. -.|.
T Consensus 541 g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGl-------epqtiESi~lLR~rktp-FivALNKiDRL-Ygwk~~ 611 (1064)
T KOG1144|consen 541 GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGL-------EPQTIESINLLRMRKTP-FIVALNKIDRL-YGWKSC 611 (1064)
T ss_pred eeEEecCCCchhhhhhhhccccccceEEEEeehhccC-------CcchhHHHHHHHhcCCC-eEEeehhhhhh-cccccC
Confidence 5999999999999999999999999999999999998 69999999999999999 99999999963 1111
Q ss_pred -------------HHHHHHHHHHHHHH---HHHcCCCC---------CCCCeEEEeecccCCCCccC
Q psy10355 109 -------------EARYNECKDKILPY---LKKLGFNA---------AKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 109 -------------~~~~~~~~~~~~~~---~~~~~~~~---------~~~~~~i~~Sa~~g~gi~~l 150 (156)
.....+.+..+..+ +.+.|++. ...+.++|+||.+|+||-.|
T Consensus 612 p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdL 678 (1064)
T KOG1144|consen 612 PNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDL 678 (1064)
T ss_pred CCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHH
Confidence 11122222222222 23334321 12356899999999998765
No 206
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.53 E-value=3e-14 Score=99.08 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=72.2
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC-cchHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG-GQTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
.+..++ ..+.+|||||++++...+..+++++|++|+|+|.++.. +|... ..+...+.. ...+.| +++++||+
T Consensus 40 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~---sf~~~~~~~~~~~~~-~~~~~p-iilv~nK~ 114 (173)
T cd04130 40 VVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPS---SFQNISEKWIPEIRK-HNPKAP-IILVGTQA 114 (173)
T ss_pred EEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHH---HHHHHHHHHHHHHHh-hCCCCC-EEEEeeCh
Confidence 344444 57889999999999888888999999999999998743 11111 011111111 113577 89999999
Q ss_pred CCCCcchhHHH------HHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 101 DDPTVMWSEAR------YNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 101 Dl~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+......... ..-..++...+.+..+ ..+++++||++|.|++++.
T Consensus 115 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~-----~~~~~e~Sa~~~~~v~~lf 166 (173)
T cd04130 115 DLRTDVNVLIQLARYGEKPVSQSRAKALAEKIG-----ACEYIECSALTQKNLKEVF 166 (173)
T ss_pred hhccChhHHHHHhhcCCCCcCHHHHHHHHHHhC-----CCeEEEEeCCCCCCHHHHH
Confidence 98532100000 0000112223333332 2489999999999998764
No 207
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.53 E-value=4.9e-14 Score=96.28 Aligned_cols=118 Identities=16% Similarity=0.093 Sum_probs=74.8
Q ss_pred eeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEE
Q psy10355 18 VEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVV 95 (156)
Q Consensus 18 ~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 95 (156)
.......+...+ ..+.+|||||++.+...+..+++.+|++++|+|+++.. ++.....+...+......++| +++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-iii 110 (162)
T cd04123 35 ASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDAD---SFQKVKKWIKELKQMRGNNIS-LVI 110 (162)
T ss_pred eeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhCCCCCe-EEE
Confidence 333333444434 46999999999999888888899999999999997743 111111222222222223567 899
Q ss_pred EEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 96 LINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 96 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++||+|+...... ..+ .+..+.+.. +.+++++||++|+|++++.
T Consensus 111 v~nK~D~~~~~~~--~~~----~~~~~~~~~------~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 111 VGNKIDLERQRVV--SKS----EAEEYAKSV------GAKHFETSAKTGKGIEELF 154 (162)
T ss_pred EEECcccccccCC--CHH----HHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 9999997632111 011 122223332 4578999999999998764
No 208
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.53 E-value=3.8e-14 Score=99.61 Aligned_cols=110 Identities=12% Similarity=0.093 Sum_probs=69.9
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||++++...+..+++++|++++|+|.++.. +|+... .+...+.. ...+.| +++++||.|+......
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~---s~~~~~~~~~~~~~~-~~~~~p-iilv~nK~Dl~~~~~~ 123 (187)
T cd04132 49 IELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPT---SLDNVEDKWFPEVNH-FCPGTP-IMLVGLKTDLRKDKNL 123 (187)
T ss_pred EEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHH-hCCCCC-EEEEEeChhhhhCccc
Confidence 56999999999999988888999999999999998743 221111 11111111 123577 8999999997532110
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.... ..++...+....+. .+++++||++|.|++++-
T Consensus 124 ~~~v--~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~f 159 (187)
T cd04132 124 DRKV--TPAQAESVAKKQGA-----FAYLECSAKTMENVEEVF 159 (187)
T ss_pred cCCc--CHHHHHHHHHHcCC-----cEEEEccCCCCCCHHHHH
Confidence 0000 01123333343321 388999999999998753
No 209
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.53 E-value=3.1e-13 Score=102.71 Aligned_cols=135 Identities=21% Similarity=0.325 Sum_probs=111.6
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCC-----------------------eEEEEEeCCCCcChHHHHHhhh--hcCCEEE
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDR-----------------------KHFTILDAPGHKSFVPNMIGGT--AQADLAV 58 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~-----------------------~~~~iiDtpG~~~~~~~~~~~~--~~~d~~i 58 (156)
+.|..+.|-++|.|.+.+..-+-+++ +-+.|+||.||+.+...++..+ .+.|..+
T Consensus 152 ~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYgl 231 (527)
T COG5258 152 YLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGL 231 (527)
T ss_pred hhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEE
Confidence 35778899999999999988876533 5689999999999999999988 4679999
Q ss_pred EEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCC--------
Q psy10355 59 LVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNA-------- 130 (156)
Q Consensus 59 lvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 130 (156)
+++.+++|. ...+.+++-.+...++| +|++++|+|+. ..++++...+++...++..+--+
T Consensus 232 LvVaAddG~-------~~~tkEHLgi~~a~~lP-viVvvTK~D~~----~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d 299 (527)
T COG5258 232 LVVAADDGV-------TKMTKEHLGIALAMELP-VIVVVTKIDMV----PDDRFQGVVEEISALLKRVGRIPLIVKDTDD 299 (527)
T ss_pred EEEEccCCc-------chhhhHhhhhhhhhcCC-EEEEEEecccC----cHHHHHHHHHHHHHHHHHhcccceeeeccch
Confidence 999999998 47889999999999999 89999999987 45567777777877777655322
Q ss_pred -----------CCCCeEEEeecccCCCCccC
Q psy10355 131 -----------AKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 131 -----------~~~~~~i~~Sa~~g~gi~~l 150 (156)
..-+|+|.+|+.+|+|++-|
T Consensus 300 ~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL 330 (527)
T COG5258 300 VVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL 330 (527)
T ss_pred hHHhhhhhhcCCceEEEEEEecccCccHHHH
Confidence 11368999999999998754
No 210
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.52 E-value=4e-14 Score=97.94 Aligned_cols=107 Identities=20% Similarity=0.185 Sum_probs=71.3
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||+++|...+..++++++++++|+|.++.. ++.....+...+.... ..+.| +++++||+|+......
T Consensus 49 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~~~~~ 124 (168)
T cd04177 49 CDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEA---SLNELGELREQVLRIKDSDNVP-MVLVGNKADLEDDRQV 124 (168)
T ss_pred EEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhhCCCCCC-EEEEEEChhccccCcc
Confidence 57899999999999999999999999999999997742 2221222323222222 34678 8999999997532110
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. .++...+.+..+ ..+++++||++|.|++++-
T Consensus 125 --~----~~~~~~~~~~~~-----~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 125 --S----REDGVSLSQQWG-----NVPFYETSARKRTNVDEVF 156 (168)
T ss_pred --C----HHHHHHHHHHcC-----CceEEEeeCCCCCCHHHHH
Confidence 0 111222223322 2689999999999998753
No 211
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.52 E-value=7.3e-14 Score=110.60 Aligned_cols=112 Identities=17% Similarity=0.148 Sum_probs=80.5
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChH--------HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKSFV--------PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~--------~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
...+|+|.+.....+.+++..+.+|||||++++. ..+..+++.+|++++|+|++.+.. ......+
T Consensus 244 ~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s-------~~~~~~l 316 (449)
T PRK05291 244 TDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLT-------EEDDEIL 316 (449)
T ss_pred CCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCC-------hhHHHHH
Confidence 3467899999989999999999999999997643 234557889999999999987541 2222233
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.. ..+.| +++|+||+|+.... . .. .. ...+++++||++|+|++.|..
T Consensus 317 ~~--~~~~p-iiiV~NK~DL~~~~--~--~~----------~~------~~~~~i~iSAktg~GI~~L~~ 363 (449)
T PRK05291 317 EE--LKDKP-VIVVLNKADLTGEI--D--LE----------EE------NGKPVIRISAKTGEGIDELRE 363 (449)
T ss_pred Hh--cCCCC-cEEEEEhhhccccc--h--hh----------hc------cCCceEEEEeeCCCCHHHHHH
Confidence 22 34677 89999999985311 0 00 00 245889999999999988643
No 212
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.52 E-value=2.8e-14 Score=99.00 Aligned_cols=118 Identities=13% Similarity=0.090 Sum_probs=73.2
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
.+..++ ..+.+|||||+.++...+..+++.+|++++|+|..+.. +|.... .+...+... ..+.| +++++||+
T Consensus 40 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~---s~~~~~~~~~~~l~~~-~~~~p-iivv~nK~ 114 (174)
T cd04135 40 SVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPA---SFQNVKEEWVPELKEY-APNVP-YLLVGTQI 114 (174)
T ss_pred EEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhh-CCCCC-EEEEeEch
Confidence 344444 45789999999999888888899999999999997743 111111 122222211 34677 89999999
Q ss_pred CCCCcchhHHHHHH------HHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 101 DDPTVMWSEARYNE------CKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 101 Dl~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+............ ..++...+.+..++ .+++++||++|.|++++.
T Consensus 115 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~gi~~~f 166 (174)
T cd04135 115 DLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGA-----HCYVECSALTQKGLKTVF 166 (174)
T ss_pred hhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCC-----CEEEEecCCcCCCHHHHH
Confidence 97532111100000 01122333344432 478999999999998764
No 213
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.52 E-value=2.2e-13 Score=92.37 Aligned_cols=113 Identities=16% Similarity=0.138 Sum_probs=73.3
Q ss_pred EEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCcEEEEEe
Q psy10355 23 AYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKHLVVLIN 98 (156)
Q Consensus 23 ~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ivv~N 98 (156)
..+..++..+.+|||||+.++...+..+++.+|++++|+|+++... + ......+.... ..+.| +++++|
T Consensus 37 ~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~iiv~n 109 (159)
T cd04159 37 RKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTA---L---EAAKNELHDLLEKPSLEGIP-LLVLGN 109 (159)
T ss_pred EEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHcChhhcCCC-EEEEEe
Confidence 4456677899999999999999999999999999999999976320 0 11111222211 24678 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+|+..... ...+.+.+ ..... ....++++++||++|.|++++.
T Consensus 110 K~D~~~~~~----~~~~~~~~----~~~~~-~~~~~~~~~~Sa~~~~gi~~l~ 153 (159)
T cd04159 110 KNDLPGALS----VDELIEQM----NLKSI-TDREVSCYSISCKEKTNIDIVL 153 (159)
T ss_pred CccccCCcC----HHHHHHHh----Ccccc-cCCceEEEEEEeccCCChHHHH
Confidence 999753211 11111111 00001 1124689999999999998764
No 214
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.52 E-value=1.8e-13 Score=96.02 Aligned_cols=134 Identities=19% Similarity=0.156 Sum_probs=92.9
Q ss_pred CccCccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCc----------ChHHHHHhhh---hcCCEEEEEEeCCCCc
Q psy10355 1 MTGQGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHK----------SFVPNMIGGT---AQADLAVLVISARKGE 67 (156)
Q Consensus 1 ~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~----------~~~~~~~~~~---~~~d~~ilvvD~~~~~ 67 (156)
|++++........+|.|....+..+... +.++|.||+- ........|+ .+..++++++|+..+.
T Consensus 44 l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~ 120 (200)
T COG0218 44 LTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPP 120 (200)
T ss_pred HhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCC
Confidence 3556666677888999998887776643 9999999972 2334444454 3467899999999887
Q ss_pred cccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCC
Q psy10355 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNP 147 (156)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi 147 (156)
...+.+++.++...++| +++++||+|.......... +....+.+++.+.....++.+|+.++.|+
T Consensus 121 -------~~~D~em~~~l~~~~i~-~~vv~tK~DKi~~~~~~k~-------l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi 185 (200)
T COG0218 121 -------KDLDREMIEFLLELGIP-VIVVLTKADKLKKSERNKQ-------LNKVAEELKKPPPDDQWVVLFSSLKKKGI 185 (200)
T ss_pred -------cHHHHHHHHHHHHcCCC-eEEEEEccccCChhHHHHH-------HHHHHHHhcCCCCccceEEEEecccccCH
Confidence 36678899999999999 7999999998743222221 22222333333221112889999999999
Q ss_pred ccCCC
Q psy10355 148 LLLGI 152 (156)
Q Consensus 148 ~~l~~ 152 (156)
++|+.
T Consensus 186 ~~l~~ 190 (200)
T COG0218 186 DELKA 190 (200)
T ss_pred HHHHH
Confidence 88753
No 215
>KOG0468|consensus
Probab=99.52 E-value=8e-14 Score=111.73 Aligned_cols=93 Identities=25% Similarity=0.275 Sum_probs=84.2
Q ss_pred cCccccHHHhhcCceeeeeeEEEEeC-----CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcc
Q psy10355 3 GQGLWLRQKREKGKTVEVGRAYFETD-----RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQ 77 (156)
Q Consensus 3 ~~~~~~~~e~~~g~t~~~~~~~~~~~-----~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~ 77 (156)
+++|.+..|++||.++..+...+-.. ++-++++|||||-.|...+..+++.+|++++|+|+.+|.+ -+
T Consensus 165 rytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVm-------ln 237 (971)
T KOG0468|consen 165 RYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVM-------LN 237 (971)
T ss_pred cccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCce-------ee
Confidence 46788999999999999999888653 3669999999999999999999999999999999999984 67
Q ss_pred hHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 78 TREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 78 ~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
++..+.++...+.| +++|+||+|+.
T Consensus 238 tEr~ikhaiq~~~~-i~vviNKiDRL 262 (971)
T KOG0468|consen 238 TERIIKHAIQNRLP-IVVVINKVDRL 262 (971)
T ss_pred HHHHHHHHHhccCc-EEEEEehhHHH
Confidence 88999999998999 99999999964
No 216
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.52 E-value=7.1e-14 Score=112.59 Aligned_cols=116 Identities=16% Similarity=0.171 Sum_probs=88.0
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcChH------HHHHhhh--hcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSFV------PNMIGGT--AQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~------~~~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
+|+|++.+.+.+...++.+.++|+||...+. +.+..++ ...|+++.|+|++.- .+......++
T Consensus 34 pGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnL---------eRnLyltlQL 104 (653)
T COG0370 34 PGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNL---------ERNLYLTLQL 104 (653)
T ss_pred CCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchH---------HHHHHHHHHH
Confidence 6999999999999999999999999987652 2233343 357999999999763 3445555677
Q ss_pred HHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 86 KTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 86 ~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.+.|+| +++++|++|.+......-+.+++++.+ ++|++++||++|+|+++++.
T Consensus 105 lE~g~p-~ilaLNm~D~A~~~Gi~ID~~~L~~~L-------------GvPVv~tvA~~g~G~~~l~~ 157 (653)
T COG0370 105 LELGIP-MILALNMIDEAKKRGIRIDIEKLSKLL-------------GVPVVPTVAKRGEGLEELKR 157 (653)
T ss_pred HHcCCC-eEEEeccHhhHHhcCCcccHHHHHHHh-------------CCCEEEEEeecCCCHHHHHH
Confidence 788999 899999999764433333344444333 57999999999999888754
No 217
>PLN03108 Rab family protein; Provisional
Probab=99.52 E-value=4.6e-14 Score=101.38 Aligned_cols=117 Identities=23% Similarity=0.187 Sum_probs=74.4
Q ss_pred eeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEE
Q psy10355 18 VEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVV 95 (156)
Q Consensus 18 ~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 95 (156)
.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|++... +|.....+...+......+.| +++
T Consensus 41 ~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~---s~~~l~~~~~~~~~~~~~~~p-iii 116 (210)
T PLN03108 41 VEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLASWLEDARQHANANMT-IML 116 (210)
T ss_pred ceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHH---HHHHHHHHHHHHHHhcCCCCc-EEE
Confidence 333333444444 46889999999999988999999999999999997642 111111222222212223567 899
Q ss_pred EEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 96 LINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 96 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
++||+|+...... ... +...+.+.. +++++++||++|.|++++
T Consensus 117 v~nK~Dl~~~~~~--~~~----~~~~~~~~~------~~~~~e~Sa~~~~~v~e~ 159 (210)
T PLN03108 117 IGNKCDLAHRRAV--STE----EGEQFAKEH------GLIFMEASAKTAQNVEEA 159 (210)
T ss_pred EEECccCccccCC--CHH----HHHHHHHHc------CCEEEEEeCCCCCCHHHH
Confidence 9999998532110 111 122333333 468999999999999874
No 218
>PRK04213 GTP-binding protein; Provisional
Probab=99.52 E-value=1.2e-13 Score=98.19 Aligned_cols=128 Identities=18% Similarity=0.170 Sum_probs=73.5
Q ss_pred HHHhhcCceeeeeeEEEEeCCeEEEEEeCCCC-----------cChHHHHHhhh----hcCCEEEEEEeCCCCcc-cccc
Q psy10355 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGH-----------KSFVPNMIGGT----AQADLAVLVISARKGEF-ETGF 72 (156)
Q Consensus 9 ~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~-----------~~~~~~~~~~~----~~~d~~ilvvD~~~~~~-~~~~ 72 (156)
..+..+|+|...... .+. .+.+|||||+ +++...+..++ ..++++++|+|+..... ...+
T Consensus 35 ~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~ 110 (201)
T PRK04213 35 RVGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERW 110 (201)
T ss_pred ccCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCcccccccccc
Confidence 344566888775543 333 6999999994 34444444444 34679999999865310 0000
Q ss_pred C---CCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCC-CCC--CCeEEEeecccCCC
Q psy10355 73 D---RGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFN-AAK--DLSFMPCSGELEKN 146 (156)
Q Consensus 73 ~---~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~i~~Sa~~g~g 146 (156)
. ......+++..+...++| +++++||+|+.... ... ...+.+.++.. +.. ..+++++||++| |
T Consensus 111 ~~~~~~~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-g 179 (201)
T PRK04213 111 EGRGEIPIDVEMFDFLRELGIP-PIVAVNKMDKIKNR--DEV-------LDEIAERLGLYPPWRQWQDIIAPISAKKG-G 179 (201)
T ss_pred ccCCCcHHHHHHHHHHHHcCCC-eEEEEECccccCcH--HHH-------HHHHHHHhcCCccccccCCcEEEEecccC-C
Confidence 0 011234445555567889 89999999985321 111 12222333321 001 236899999999 9
Q ss_pred CccCC
Q psy10355 147 PLLLG 151 (156)
Q Consensus 147 i~~l~ 151 (156)
++++.
T Consensus 180 i~~l~ 184 (201)
T PRK04213 180 IEELK 184 (201)
T ss_pred HHHHH
Confidence 98764
No 219
>KOG0097|consensus
Probab=99.52 E-value=1.8e-14 Score=95.41 Aligned_cols=124 Identities=17% Similarity=0.172 Sum_probs=79.2
Q ss_pred HHhhcCceeeeeeEEEEe--CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH
Q psy10355 10 QKREKGKTVEVGRAYFET--DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT 87 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
..+.-.+.++.....++. ...++.+|||+|+++|...+.++++++-++++|+|.++.. .+.-...|..-.+.+-.
T Consensus 38 adcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrs---tynhlsswl~dar~ltn 114 (215)
T KOG0097|consen 38 ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS---TYNHLSSWLTDARNLTN 114 (215)
T ss_pred hcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhh---hhhhHHHHHhhhhccCC
Confidence 344444444444444444 4567999999999999999999999999999999998743 11111112221122222
Q ss_pred cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 88 AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 88 ~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
.+.. ++++.||.|+... ....+++ .+.+.++. +..|++.||++|+|++.
T Consensus 115 pnt~-i~lignkadle~q--rdv~yee----ak~faeen------gl~fle~saktg~nved 163 (215)
T KOG0097|consen 115 PNTV-IFLIGNKADLESQ--RDVTYEE----AKEFAEEN------GLMFLEASAKTGQNVED 163 (215)
T ss_pred CceE-EEEecchhhhhhc--ccCcHHH----HHHHHhhc------CeEEEEecccccCcHHH
Confidence 2334 6889999997421 1112333 34444544 45899999999999875
No 220
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.51 E-value=5.3e-14 Score=96.95 Aligned_cols=107 Identities=19% Similarity=0.125 Sum_probs=67.8
Q ss_pred CeEEEEEeCCCCcC-hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH--HcCCCcEEEEEeCCCCCCc
Q psy10355 29 RKHFTILDAPGHKS-FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK--TAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 29 ~~~~~iiDtpG~~~-~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ivv~NK~Dl~~~ 105 (156)
...+.+|||||+.+ +...+..+++.+|++++|+|+++.. +|.....+...+.... ..+.| +++|+||+|+...
T Consensus 46 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 121 (165)
T cd04146 46 QVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRS---SFDEISQLKQLIREIKKRDREIP-VILVGNKADLLHY 121 (165)
T ss_pred EEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCchHHh
Confidence 34688999999985 3456777889999999999998743 2222222333333222 23677 8999999997421
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccC-CCCccCC
Q psy10355 106 MWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELE-KNPLLLG 151 (156)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g-~gi~~l~ 151 (156)
.. .. .++...+.+.. +.+++++||++| .|++++.
T Consensus 122 ~~----v~--~~~~~~~~~~~------~~~~~e~Sa~~~~~~v~~~f 156 (165)
T cd04146 122 RQ----VS--TEEGEKLASEL------GCLFFEVSAAEDYDGVHSVF 156 (165)
T ss_pred Cc----cC--HHHHHHHHHHc------CCEEEEeCCCCCchhHHHHH
Confidence 10 00 11122223333 358999999999 4888764
No 221
>KOG0073|consensus
Probab=99.51 E-value=4e-13 Score=90.83 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=79.4
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEE
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVV 95 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iv 95 (156)
|+........++++++++||..|+..+++-|..|+..+|++|+|+|+++.. +++.-. .....+..-+..|.| +++
T Consensus 47 t~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~---r~~e~~~~L~~lL~eerlaG~~-~Lv 122 (185)
T KOG0073|consen 47 TLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRM---RMQECKQELTELLVEERLAGAP-LLV 122 (185)
T ss_pred ccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHH---HHHHHHHHHHHHHhhhhhcCCc-eEE
Confidence 344555567788999999999999999999999999999999999997643 111001 111122222235778 899
Q ss_pred EEeCCCCCCcchhHHHHHHHHH--HHHHHHHHcCCCCCCCCeEEEeecccCCCCc
Q psy10355 96 LINKMDDPTVMWSEARYNECKD--KILPYLKKLGFNAAKDLSFMPCSGELEKNPL 148 (156)
Q Consensus 96 v~NK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~ 148 (156)
++||.|+.++-. ..++.. .+..+. +...++++.+||.+|+++.
T Consensus 123 lank~dl~~~l~----~~~i~~~~~L~~l~------ks~~~~l~~cs~~tge~l~ 167 (185)
T KOG0073|consen 123 LANKQDLPGALS----LEEISKALDLEELA------KSHHWRLVKCSAVTGEDLL 167 (185)
T ss_pred EEecCcCccccC----HHHHHHhhCHHHhc------cccCceEEEEeccccccHH
Confidence 999999874321 122221 122222 2247899999999998764
No 222
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.51 E-value=5.8e-14 Score=107.91 Aligned_cols=119 Identities=16% Similarity=0.101 Sum_probs=76.7
Q ss_pred hhcCceeeeeeEEEEe-CCeEEEEEeCCCCc-Ch-------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 12 REKGKTVEVGRAYFET-DRKHFTILDAPGHK-SF-------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~-~~~~~~iiDtpG~~-~~-------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
-..|.|.+.....+.+ ++..+.+|||||+. +. ...+...+.++|++++|+|++++... .....+...+
T Consensus 218 ~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~---~~~~~~~~~L 294 (351)
T TIGR03156 218 DQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDRE---EQIEAVEKVL 294 (351)
T ss_pred cCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchH---HHHHHHHHHH
Confidence 3468889998888888 57899999999982 21 22344567899999999999875410 0000111223
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
..+...+.| +++|+||+|+... .. +..... + ..+++++||++|+|+++|..
T Consensus 295 ~~l~~~~~p-iIlV~NK~Dl~~~----~~-------v~~~~~--~-----~~~~i~iSAktg~GI~eL~~ 345 (351)
T TIGR03156 295 EELGAEDIP-QLLVYNKIDLLDE----PR-------IERLEE--G-----YPEAVFVSAKTGEGLDLLLE 345 (351)
T ss_pred HHhccCCCC-EEEEEEeecCCCh----Hh-------HHHHHh--C-----CCCEEEEEccCCCCHHHHHH
Confidence 332223577 8999999998531 11 111111 1 23689999999999988753
No 223
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.51 E-value=4.3e-13 Score=106.60 Aligned_cols=125 Identities=17% Similarity=0.155 Sum_probs=78.7
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCCCcc-ccccCCCcchHHHHH-
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARKGEF-ETGFDRGGQTREHAM- 83 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~~~~-~~~~~~~~~~~~~~~- 83 (156)
.+++|+.+....+.+.+..|+++||||+.. +.......+..+|++|+|+|++.... ...+.........+.
T Consensus 189 ypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~ 268 (500)
T PRK12296 189 YPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAA 268 (500)
T ss_pred cCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHH
Confidence 468899999999999999999999999742 12234556678999999999974210 000000011111221
Q ss_pred HH----------HHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LA----------KTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~----------~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+. ...+.| .|+|+||+|+... .++.+.+...++.. .++++++||++++|+++|.
T Consensus 269 y~~~l~~~~~~~~l~~kP-~IVVlNKiDL~da-------~el~e~l~~~l~~~------g~~Vf~ISA~tgeGLdEL~ 332 (500)
T PRK12296 269 YAPALDGDLGLGDLAERP-RLVVLNKIDVPDA-------RELAEFVRPELEAR------GWPVFEVSAASREGLRELS 332 (500)
T ss_pred hhhcccccchhhhhcCCC-EEEEEECccchhh-------HHHHHHHHHHHHHc------CCeEEEEECCCCCCHHHHH
Confidence 11 123567 7999999998531 11222222223322 4689999999999998764
No 224
>KOG0075|consensus
Probab=99.51 E-value=2.3e-13 Score=90.54 Aligned_cols=118 Identities=18% Similarity=0.179 Sum_probs=85.3
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH----HHHHHcCC
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA----MLAKTAGV 90 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 90 (156)
+-|++.....++-++..+.+||.||+++|..+|..+.+++++++++||+++.. . .....+.+ ....-.++
T Consensus 50 iptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~---k---~~~sr~EL~~LL~k~~l~gi 123 (186)
T KOG0075|consen 50 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPD---K---LEASRSELHDLLDKPSLTGI 123 (186)
T ss_pred cccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcc---c---chhhHHHHHHHhcchhhcCC
Confidence 44677778888889999999999999999999999999999999999998743 1 11222222 22223578
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCC--CCCeEEEeecccCCCCccC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA--KDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~Sa~~g~gi~~l 150 (156)
| ++++.||.|+.++..... +....|+... ..+-.+.+|++...||+..
T Consensus 124 p-~LVLGnK~d~~~AL~~~~-----------li~rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 124 P-LLVLGNKIDLPGALSKIA-----------LIERMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred c-EEEecccccCcccccHHH-----------HHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence 8 899999999876533222 2233444321 2456899999999998753
No 225
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.51 E-value=1e-13 Score=107.63 Aligned_cols=114 Identities=18% Similarity=0.143 Sum_probs=85.5
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcCh--------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSF--------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~--------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
-+|+|+|.....+..+|+.+.++||+|.++- .......+.+||.+++|+|++.+. ...+...+.
T Consensus 248 I~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~-------~~~d~~~~~- 319 (454)
T COG0486 248 IAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPL-------DKEDLALIE- 319 (454)
T ss_pred CCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCC-------chhhHHHHH-
Confidence 4699999999999999999999999998753 456778889999999999998864 233444444
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
....+.| +++++||.|+....... . + .. ..+.+++.+||++|+|++.|++
T Consensus 320 ~~~~~~~-~i~v~NK~DL~~~~~~~----~----~-----~~----~~~~~~i~iSa~t~~Gl~~L~~ 369 (454)
T COG0486 320 LLPKKKP-IIVVLNKADLVSKIELE----S----E-----KL----ANGDAIISISAKTGEGLDALRE 369 (454)
T ss_pred hcccCCC-EEEEEechhcccccccc----h----h-----hc----cCCCceEEEEecCccCHHHHHH
Confidence 3445667 79999999987432110 0 1 00 0244789999999999998764
No 226
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.50 E-value=2.9e-13 Score=91.87 Aligned_cols=110 Identities=19% Similarity=0.143 Sum_probs=77.2
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHH--------HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVP--------NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~--------~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.+|+|.+.....+..++..+.+|||||+.++.. .....+..+|++++|+|++... .......+..
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~-------~~~~~~~~~~ 104 (157)
T cd04164 32 IAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGL-------DEEDLEILEL 104 (157)
T ss_pred CCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCC-------CHHHHHHHHh
Confidence 457888877778888888999999999876532 3445678999999999998643 1222222222
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+.| +++++||+|+..... . ... . ...+++++||++|.|+++|.
T Consensus 105 --~~~~~-vi~v~nK~D~~~~~~----~---------~~~--~----~~~~~~~~Sa~~~~~v~~l~ 149 (157)
T cd04164 105 --PADKP-IIVVLNKSDLLPDSE----L---------LSL--L----AGKPIIAISAKTGEGLDELK 149 (157)
T ss_pred --hcCCC-EEEEEEchhcCCccc----c---------ccc--c----CCCceEEEECCCCCCHHHHH
Confidence 35677 899999999763211 0 000 0 24689999999999998764
No 227
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.50 E-value=1.4e-13 Score=95.37 Aligned_cols=127 Identities=16% Similarity=0.109 Sum_probs=77.1
Q ss_pred hcCceeeeeeEEEEeC-CeEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCCCcc---ccccCCCcchHHH
Q psy10355 13 EKGKTVEVGRAYFETD-RKHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARKGEF---ETGFDRGGQTREH 81 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~-~~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~~~~---~~~~~~~~~~~~~ 81 (156)
.++.|.+.....+.++ +..+.+|||||+.+ +.......++.+|++++|+|+.+... ...+.....+...
T Consensus 26 ~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 105 (176)
T cd01881 26 YPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAE 105 (176)
T ss_pred CCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHH
Confidence 4577888887888888 89999999999743 22344566788999999999976410 0000000111111
Q ss_pred HHHHH-------HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 82 AMLAK-------TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 82 ~~~~~-------~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+.... ..+.| +++++||+|+.... ...... ... .... ...+++++||++|.|++++.+
T Consensus 106 ~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~----~~~~~~--~~~-~~~~-----~~~~~~~~Sa~~~~gl~~l~~ 170 (176)
T cd01881 106 LKLYDLETILGLLTAKP-VIYVLNKIDLDDAE----ELEEEL--VRE-LALE-----EGAEVVPISAKTEEGLDELIR 170 (176)
T ss_pred HHHhhhhhHHHHHhhCC-eEEEEEchhcCchh----HHHHHH--HHH-HhcC-----CCCCEEEEehhhhcCHHHHHH
Confidence 21111 13677 89999999986321 111110 111 1111 246799999999999987653
No 228
>KOG0091|consensus
Probab=99.49 E-value=7.4e-14 Score=94.47 Aligned_cols=106 Identities=12% Similarity=0.084 Sum_probs=73.6
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
.++.+|||+|+++|...+.++++++=++++|+|.+. ..+|+-...|......... ...+-+.+|..|+||... .
T Consensus 58 iklqlwdtagqerfrsitksyyrnsvgvllvyditn---r~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq--R 132 (213)
T KOG0091|consen 58 IKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITN---RESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ--R 132 (213)
T ss_pred EEEEEeeccchHHHHHHHHHHhhcccceEEEEeccc---hhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh--c
Confidence 579999999999999999999999999999999987 3344434444443322222 112226779999998631 2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+... ++...+.+.+ ++.||+|||++|.|+++.
T Consensus 133 qVt~----EEaEklAa~h------gM~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 133 QVTA----EEAEKLAASH------GMAFVETSAKNGCNVEEA 164 (213)
T ss_pred cccH----HHHHHHHHhc------CceEEEecccCCCcHHHH
Confidence 2122 2333344444 579999999999999863
No 229
>KOG0070|consensus
Probab=99.49 E-value=1.1e-13 Score=95.37 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=82.2
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH-HHHHH---cCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA-MLAKT---AGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~ 92 (156)
|++.....+++.+..|++||..|+.+++..|..|+++.+++|||+|+++.. ++. ...+.+ ..+.. .+.|
T Consensus 48 TiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~---Ri~---eak~eL~~~l~~~~l~~~~- 120 (181)
T KOG0070|consen 48 TIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRE---RIE---EAKEELHRMLAEPELRNAP- 120 (181)
T ss_pred ccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHH---HHH---HHHHHHHHHHcCcccCCce-
Confidence 455666677788999999999999999999999999999999999998743 111 111211 11221 3566
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
+++..||.|++++-.. .+ +...+....+.. ..|.+-.++|.+|+|+.+
T Consensus 121 llv~aNKqD~~~als~----~e----i~~~L~l~~l~~-~~w~iq~~~a~~G~GL~e 168 (181)
T KOG0070|consen 121 LLVFANKQDLPGALSA----AE----ITNKLGLHSLRS-RNWHIQSTCAISGEGLYE 168 (181)
T ss_pred EEEEechhhccccCCH----HH----HHhHhhhhccCC-CCcEEeeccccccccHHH
Confidence 8999999998765331 22 333333333333 468899999999999754
No 230
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.48 E-value=2e-13 Score=93.93 Aligned_cols=95 Identities=17% Similarity=0.186 Sum_probs=63.2
Q ss_pred EEeCCCCc----ChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhH
Q psy10355 34 ILDAPGHK----SFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSE 109 (156)
Q Consensus 34 iiDtpG~~----~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~ 109 (156)
+|||||+. ++...+..+++++|++++|+|++.+.. ......... ..+.| +++++||+|+....
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s-------~~~~~~~~~--~~~~~-ii~v~nK~Dl~~~~--- 107 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPES-------RLPAGLLDI--GVSKR-QIAVISKTDMPDAD--- 107 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCccc-------ccCHHHHhc--cCCCC-eEEEEEccccCccc---
Confidence 79999973 344455666899999999999987541 111222211 23567 89999999985321
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 110 ARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
... +..+++..++ ..|++++||++|+|+++|.
T Consensus 108 --~~~----~~~~~~~~~~----~~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 108 --VAA----TRKLLLETGF----EEPIFELNSHDPQSVQQLV 139 (158)
T ss_pred --HHH----HHHHHHHcCC----CCCEEEEECCCccCHHHHH
Confidence 112 3334444443 2599999999999998865
No 231
>PRK09866 hypothetical protein; Provisional
Probab=99.48 E-value=5.2e-13 Score=107.74 Aligned_cols=111 Identities=20% Similarity=0.156 Sum_probs=75.9
Q ss_pred CeEEEEEeCCCCcC-----hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC--CCcEEEEEeCCC
Q psy10355 29 RKHFTILDAPGHKS-----FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG--VKHLVVLINKMD 101 (156)
Q Consensus 29 ~~~~~iiDtpG~~~-----~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ivv~NK~D 101 (156)
..+++|+||||... +.+.+..++..+|+++||+|+..+. ...+...+..+...+ .| +++++||+|
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~-------s~~DeeIlk~Lkk~~K~~P-VILVVNKID 300 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLK-------SISDEEVREAILAVGQSVP-LYVLVNKFD 300 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCC-------ChhHHHHHHHHHhcCCCCC-EEEEEEccc
Confidence 47899999999854 3445667899999999999998754 244556666666666 37 899999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 102 DPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+.... ....+.+++.+...+...+. ....+||+||++|.|++.|..
T Consensus 301 l~dre--eddkE~Lle~V~~~L~q~~i---~f~eIfPVSAlkG~nid~LLd 346 (741)
T PRK09866 301 QQDRN--SDDADQVRALISGTLMKGCI---TPQQIFPVSSMWGYLANRARH 346 (741)
T ss_pred CCCcc--cchHHHHHHHHHHHHHhcCC---CCceEEEEeCCCCCCHHHHHH
Confidence 74211 11133344444433332222 134799999999999987653
No 232
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.47 E-value=1.3e-13 Score=94.89 Aligned_cols=110 Identities=11% Similarity=0.019 Sum_probs=68.3
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcEEEEEeCC
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHLVVLINKM 100 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~NK~ 100 (156)
.+..++ ..+.+|||+|+++. .+++.+|++++|+|.++. .+|.....+...+..... .++| +++++||+
T Consensus 39 ~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~---~sf~~~~~~~~~i~~~~~~~~~p-iilvgnK~ 109 (158)
T cd04103 39 EVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFSLENE---ASFQTVYNLYHQLSSYRNISEIP-LILVGTQD 109 (158)
T ss_pred EEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEECCCH---HHHHHHHHHHHHHHHhcCCCCCC-EEEEeeHH
Confidence 345555 56999999999752 456789999999999883 344332333333322221 3467 89999999
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 101 DDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 101 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+........ . .++...+.+.. ..+++++|||++|.||+++-
T Consensus 110 Dl~~~~~~~v--~--~~~~~~~~~~~-----~~~~~~e~SAk~~~~i~~~f 151 (158)
T cd04103 110 AISESNPRVI--D--DARARQLCADM-----KRCSYYETCATYGLNVERVF 151 (158)
T ss_pred HhhhcCCccc--C--HHHHHHHHHHh-----CCCcEEEEecCCCCCHHHHH
Confidence 9732111111 1 11222333332 14689999999999998753
No 233
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.47 E-value=8.8e-13 Score=102.59 Aligned_cols=125 Identities=14% Similarity=0.063 Sum_probs=79.3
Q ss_pred hhcCceeeeeeEEEEeCCe-EEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 12 REKGKTVEVGRAYFETDRK-HFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~-~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..+++|..+....+.+.+. .++|+||||+.+ +.......+..+|++++|+|++....... .........
T Consensus 188 ~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~---~e~~~~l~~ 264 (390)
T PRK12298 188 DYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDP---VENARIIIN 264 (390)
T ss_pred CCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccCh---HHHHHHHHH
Confidence 4578999999999988764 599999999854 23345567888999999999862100000 112222222
Q ss_pred HHHH-----cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKT-----AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~-----~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.. .+.| +++|+||+|+... . ++.+.+..+.+..++ ..+++++||++++|+++|.
T Consensus 265 eL~~~~~~L~~kP-~IlVlNKiDl~~~----~---el~~~l~~l~~~~~~----~~~Vi~ISA~tg~GIdeLl 325 (390)
T PRK12298 265 ELEKYSPKLAEKP-RWLVFNKIDLLDE----E---EAEERAKAIVEALGW----EGPVYLISAASGLGVKELC 325 (390)
T ss_pred HHHhhhhhhcCCC-EEEEEeCCccCCh----H---HHHHHHHHHHHHhCC----CCCEEEEECCCCcCHHHHH
Confidence 2222 2567 7999999998532 1 122223333333222 2378999999999998764
No 234
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.47 E-value=3.4e-13 Score=93.66 Aligned_cols=110 Identities=15% Similarity=0.049 Sum_probs=70.1
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCC
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKM 100 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~ 100 (156)
.+..++ ..+.+||++|.+.+...+..+++.+|++++|+|+++.. +|. .....+.... ..++| +++|+||+
T Consensus 46 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~---s~~---~~~~~~~~~~~~~~~p-~iiv~NK~ 118 (169)
T cd01892 46 TVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPK---SFS---YCAEVYKKYFMLGEIP-CLFVAAKA 118 (169)
T ss_pred EEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHH---HHH---HHHHHHHHhccCCCCe-EEEEEEcc
Confidence 344444 57899999999999888888899999999999997742 111 1111122221 13577 89999999
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 101 DDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 101 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+...... ...+...+.+..++ ..++++||++|.|++++.
T Consensus 119 Dl~~~~~~------~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~lf 158 (169)
T cd01892 119 DLDEQQQR------YEVQPDEFCRKLGL-----PPPLHFSSKLGDSSNELF 158 (169)
T ss_pred cccccccc------cccCHHHHHHHcCC-----CCCEEEEeccCccHHHHH
Confidence 97532100 00112223333332 145899999999998753
No 235
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.47 E-value=9.1e-13 Score=104.06 Aligned_cols=109 Identities=18% Similarity=0.171 Sum_probs=76.2
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHH--------HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVP--------NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~--------~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.+|+|.+.....+.+++..+.+|||||++++.. .+..+++.+|++++|+|++.+.. .... .+..
T Consensus 234 ~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s-------~~~~-~l~~ 305 (442)
T TIGR00450 234 IKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLT-------KDDF-LIID 305 (442)
T ss_pred CCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCC-------hhHH-HHHH
Confidence 478999999999999999999999999965432 24567889999999999987541 1122 3333
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
+...+.| +++|+||+|+... .... +.+.. +.+++++||++ .|+++
T Consensus 306 ~~~~~~p-iIlV~NK~Dl~~~-----~~~~-------~~~~~------~~~~~~vSak~-~gI~~ 350 (442)
T TIGR00450 306 LNKSKKP-FILVLNKIDLKIN-----SLEF-------FVSSK------VLNSSNLSAKQ-LKIKA 350 (442)
T ss_pred HhhCCCC-EEEEEECccCCCc-----chhh-------hhhhc------CCceEEEEEec-CCHHH
Confidence 4445777 8999999998532 1111 11111 35789999998 46654
No 236
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.46 E-value=1.4e-12 Score=102.31 Aligned_cols=119 Identities=21% Similarity=0.156 Sum_probs=75.7
Q ss_pred hcCceeeeeeEEEEeC-CeEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 13 EKGKTVEVGRAYFETD-RKHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~-~~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.+++|..+....+.+. +..|++|||||+.. +.......+..++++++|+|++....... ..........
T Consensus 188 ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp---~e~~~~i~~E 264 (424)
T PRK12297 188 YHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDP---IEDYEKINKE 264 (424)
T ss_pred CCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCCh---HHHHHHHHHH
Confidence 3578888888888877 78999999999743 22334455667999999999965310000 0112222222
Q ss_pred HHH-----cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKT-----AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~-----~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+.. .+.| +++|+||+|+... ... +..+.+.+ ..+++++||++|+|+++|.
T Consensus 265 L~~y~~~L~~kP-~IVV~NK~DL~~~---~e~-------l~~l~~~l------~~~i~~iSA~tgeGI~eL~ 319 (424)
T PRK12297 265 LKLYNPRLLERP-QIVVANKMDLPEA---EEN-------LEEFKEKL------GPKVFPISALTGQGLDELL 319 (424)
T ss_pred HhhhchhccCCc-EEEEEeCCCCcCC---HHH-------HHHHHHHh------CCcEEEEeCCCCCCHHHHH
Confidence 222 3567 7999999997421 111 22222222 2478999999999998874
No 237
>KOG0076|consensus
Probab=99.46 E-value=9.4e-14 Score=94.73 Aligned_cols=122 Identities=20% Similarity=0.127 Sum_probs=86.6
Q ss_pred ceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC-cchHHHHHHHHHcCCCcEE
Q psy10355 16 KTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG-GQTREHAMLAKTAGVKHLV 94 (156)
Q Consensus 16 ~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i 94 (156)
.|+......+...+..+.+||..|++...+.|..+|..|+++|+++|+++.. +|... .........-...|+| ++
T Consensus 55 ~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~e---R~~~~~t~~~~v~~~E~leg~p-~L 130 (197)
T KOG0076|consen 55 PTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRE---RFEESKTAFEKVVENEKLEGAP-VL 130 (197)
T ss_pred cccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHH---HHHHHHHHHHHHHHHHHhcCCc-hh
Confidence 4566667777777889999999999999999999999999999999998732 22111 2222333444456899 79
Q ss_pred EEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 95 VLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 95 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
+.+||-|+... ....+ +...+......+..+.++.|+||++|+||.+
T Consensus 131 ~lankqd~q~~----~~~~E----l~~~~~~~e~~~~rd~~~~pvSal~gegv~e 177 (197)
T KOG0076|consen 131 VLANKQDLQNA----MEAAE----LDGVFGLAELIPRRDNPFQPVSALTGEGVKE 177 (197)
T ss_pred hhcchhhhhhh----hhHHH----HHHHhhhhhhcCCccCccccchhhhcccHHH
Confidence 99999998632 12233 3333332223334578999999999999875
No 238
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.46 E-value=1.6e-12 Score=87.76 Aligned_cols=123 Identities=16% Similarity=0.084 Sum_probs=80.3
Q ss_pred hhcCceeeeeeEEEEeC-CeEEEEEeCCCCcChH-------HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 12 REKGKTVEVGRAYFETD-RKHFTILDAPGHKSFV-------PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~-~~~~~iiDtpG~~~~~-------~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
...+.|.......+... ...+.+|||||+..+. ..+..+++.+|++++|+|+..... ........
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~-------~~~~~~~~ 98 (163)
T cd00880 26 PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRAD-------EEEEKLLE 98 (163)
T ss_pred CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHH
Confidence 34566666666666655 7789999999987653 345567889999999999987651 22222245
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.....+.| +++++||+|+..... .....+. ...... .....+++++||+++.|++.+.
T Consensus 99 ~~~~~~~~-~ivv~nK~D~~~~~~----~~~~~~~-~~~~~~----~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 99 LLRERGKP-VLLVLNKIDLLPEEE----EEELLEL-RLLILL----LLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred HHHhcCCe-EEEEEEccccCChhh----HHHHHHH-HHhhcc----cccCCceEEEeeeccCCHHHHH
Confidence 55556788 899999999864221 1111100 000011 1135789999999999998764
No 239
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.46 E-value=4.2e-13 Score=93.02 Aligned_cols=113 Identities=18% Similarity=0.200 Sum_probs=74.1
Q ss_pred eeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH----HHHHHcCCCcEEEE
Q psy10355 21 GRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA----MLAKTAGVKHLVVL 96 (156)
Q Consensus 21 ~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ivv 96 (156)
....+...+..+.+|||||+..+...+..+++.+|++++|+|+.... ++ ......+ ......++| ++++
T Consensus 49 ~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~---~~---~~~~~~~~~~~~~~~~~~~p-~ivv 121 (173)
T cd04155 49 NIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKK---RL---EEAGAELVELLEEEKLAGVP-VLVF 121 (173)
T ss_pred ceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHH---HH---HHHHHHHHHHHhChhhcCCC-EEEE
Confidence 33456677899999999999998888888999999999999997632 11 1111111 112234678 8999
Q ss_pred EeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCC--CCCCeEEEeecccCCCCccCC
Q psy10355 97 INKMDDPTVMWSEARYNECKDKILPYLKKLGFNA--AKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 97 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+||+|+.... ..+++. +..++.. ...++++++||++|+|++++.
T Consensus 122 ~nK~D~~~~~----~~~~i~-------~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 167 (173)
T cd04155 122 ANKQDLATAA----PAEEIA-------EALNLHDLRDRTWHIQACSAKTGEGLQEGM 167 (173)
T ss_pred EECCCCccCC----CHHHHH-------HHcCCcccCCCeEEEEEeECCCCCCHHHHH
Confidence 9999975321 112222 2222211 123468999999999998753
No 240
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.46 E-value=2.4e-13 Score=94.39 Aligned_cols=118 Identities=13% Similarity=0.155 Sum_probs=70.7
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC-cchHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG-GQTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
.+..++ ..+.+|||||++++...+..+++++|++++|+|.++.. +|... ..+...+.. ...+.| +++++||+
T Consensus 41 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~---s~~~~~~~~~~~~~~-~~~~~p-iilv~nK~ 115 (175)
T cd01870 41 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD---SLENIPEKWTPEVKH-FCPNVP-IILVGNKK 115 (175)
T ss_pred EEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHh-hCCCCC-EEEEeeCh
Confidence 344444 46899999999998887778889999999999997632 11100 011111111 113678 89999999
Q ss_pred CCCCcchhHHHHHHH------HHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 101 DDPTVMWSEARYNEC------KDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 101 Dl~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+............. ......+.+..+ ..+++++||++|.|++++.
T Consensus 116 Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~lf 167 (175)
T cd01870 116 DLRNDEHTRRELAKMKQEPVKPEEGRDMANKIG-----AFGYMECSAKTKEGVREVF 167 (175)
T ss_pred hcccChhhhhhhhhccCCCccHHHHHHHHHHcC-----CcEEEEeccccCcCHHHHH
Confidence 975322111100000 011222223222 3589999999999998764
No 241
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.45 E-value=9.4e-13 Score=88.80 Aligned_cols=128 Identities=16% Similarity=0.125 Sum_probs=84.8
Q ss_pred cHHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHH
Q psy10355 8 LRQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAML 84 (156)
Q Consensus 8 ~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~ 84 (156)
.+.+..++++.+.....+..++ ..+.+|||||+.++...+....+.+++++.++|...... .+.... .+...+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~--~~~~~~~~~~~~~~~ 103 (161)
T TIGR00231 26 FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVL--DVEEILEKQTKEIIH 103 (161)
T ss_pred CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeeh--hhhhHhHHHHHHHHH
Confidence 4556667888888877777777 789999999999998888888888888888888755421 111011 22222222
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
....+.| +++++||+|+.... ..+.....+...+ ..+++++||++|.|++.+.
T Consensus 104 ~~~~~~p-~ivv~nK~D~~~~~--------~~~~~~~~~~~~~-----~~~~~~~sa~~~~gv~~~~ 156 (161)
T TIGR00231 104 HAESNVP-IILVGNKIDLRDAK--------LKTHVAFLFAKLN-----GEPIIPLSAETGKNIDSAF 156 (161)
T ss_pred hcccCCc-EEEEEEcccCCcch--------hhHHHHHHHhhcc-----CCceEEeecCCCCCHHHHH
Confidence 2223678 89999999986321 1222333333332 3579999999999998754
No 242
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.45 E-value=1.6e-12 Score=91.94 Aligned_cols=118 Identities=16% Similarity=0.101 Sum_probs=74.2
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCc----------ChHHHHHhhhhc---CCEEEEEEeCCCCccccccCCCcchH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHK----------SFVPNMIGGTAQ---ADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~----------~~~~~~~~~~~~---~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
..|.|........ +.++.+|||||+. ++......+++. ++++++|+|++.+. .....
T Consensus 56 ~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~-------~~~~~ 125 (196)
T PRK00454 56 TPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPL-------KELDL 125 (196)
T ss_pred CCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCC-------CHHHH
Confidence 4566666554432 4789999999963 233334444444 46788899987654 12233
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+....+...+.| +++++||+|+... ...+...+.+...+... ..+++++||++|+|++++.
T Consensus 126 ~i~~~l~~~~~~-~iiv~nK~Dl~~~----~~~~~~~~~i~~~l~~~------~~~~~~~Sa~~~~gi~~l~ 186 (196)
T PRK00454 126 QMIEWLKEYGIP-VLIVLTKADKLKK----GERKKQLKKVRKALKFG------DDEVILFSSLKKQGIDELR 186 (196)
T ss_pred HHHHHHHHcCCc-EEEEEECcccCCH----HHHHHHHHHHHHHHHhc------CCceEEEEcCCCCCHHHHH
Confidence 344555667888 8999999997532 12233333344444322 3588999999999988764
No 243
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.45 E-value=3.2e-13 Score=90.86 Aligned_cols=96 Identities=22% Similarity=0.154 Sum_probs=60.6
Q ss_pred EEEeCCCCc----ChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 33 TILDAPGHK----SFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 33 ~iiDtpG~~----~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
.+|||||+. .+.......++++|++++|+|++++.. + ....... ..+.| +++++||+|+.....
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s---~----~~~~~~~---~~~~p-~ilv~NK~Dl~~~~~- 105 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPES---R----FPPGFAS---IFVKP-VIGLVTKIDLAEADV- 105 (142)
T ss_pred eeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCc---C----CChhHHH---hccCC-eEEEEEeeccCCccc-
Confidence 689999983 233334446899999999999987651 1 1111111 12346 899999999853211
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+ ....+++..+ ..+++++||++|+|++++.
T Consensus 106 --~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 106 --DIE----RAKELLETAG-----AEPIFEISSVDEQGLEALV 137 (142)
T ss_pred --CHH----HHHHHHHHcC-----CCcEEEEecCCCCCHHHHH
Confidence 111 2233333333 2378999999999998764
No 244
>PRK11058 GTPase HflX; Provisional
Probab=99.45 E-value=4.4e-13 Score=105.34 Aligned_cols=120 Identities=14% Similarity=0.039 Sum_probs=76.8
Q ss_pred hhcCceeeeeeEEEEeCCe-EEEEEeCCCCcCh--------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 12 REKGKTVEVGRAYFETDRK-HFTILDAPGHKSF--------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~-~~~iiDtpG~~~~--------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
-..|.|.+.....+.+.+. .+.+|||||+.+. ...+...++.+|++++|+|+++.... .....+...+
T Consensus 226 ~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~---e~l~~v~~iL 302 (426)
T PRK11058 226 DQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQ---ENIEAVNTVL 302 (426)
T ss_pred cCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHH---HHHHHHHHHH
Confidence 3568899998888888664 8999999998442 22345567899999999999875310 0000112233
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCe-EEEeecccCCCCccCCC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLS-FMPCSGELEKNPLLLGI 152 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~Sa~~g~gi~~l~~ 152 (156)
..+...+.| +++|+||+|+... ... . +.. ... +.+ ++++||++|+|++.|.+
T Consensus 303 ~el~~~~~p-vIiV~NKiDL~~~--~~~---~----~~~--~~~------~~~~~v~ISAktG~GIdeL~e 355 (426)
T PRK11058 303 EEIDAHEIP-TLLVMNKIDMLDD--FEP---R----IDR--DEE------NKPIRVWLSAQTGAGIPLLFQ 355 (426)
T ss_pred HHhccCCCC-EEEEEEcccCCCc--hhH---H----HHH--Hhc------CCCceEEEeCCCCCCHHHHHH
Confidence 333334677 8999999998531 110 0 100 011 223 58899999999988753
No 245
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.45 E-value=5.7e-13 Score=90.79 Aligned_cols=117 Identities=22% Similarity=0.147 Sum_probs=74.8
Q ss_pred eeeeEEEEeC--CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcEEE
Q psy10355 19 EVGRAYFETD--RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHLVV 95 (156)
Q Consensus 19 ~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv 95 (156)
+.....+..+ ...+.+||+||+.++.......++.+|++++|+|.++... +.....+...+..... .+.| +++
T Consensus 34 ~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~p-~iv 109 (160)
T cd00876 34 DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRES---FEEIKGYREQILRVKDDEDIP-IVL 109 (160)
T ss_pred HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHH---HHHHHHHHHHHHHhcCCCCCc-EEE
Confidence 3334445555 4678999999999998888999999999999999976431 1111111222221111 3567 899
Q ss_pred EEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 96 LINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 96 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++||+|+..... . ..+.+..+.+.. ..+++++||++|.|++++.
T Consensus 110 v~nK~D~~~~~~--~----~~~~~~~~~~~~------~~~~~~~S~~~~~~i~~l~ 153 (160)
T cd00876 110 VGNKCDLENERQ--V----SKEEGKALAKEW------GCPFIETSAKDNINIDEVF 153 (160)
T ss_pred EEECCcccccce--e----cHHHHHHHHHHc------CCcEEEeccCCCCCHHHHH
Confidence 999999764111 0 112233333333 2589999999999998764
No 246
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.45 E-value=4.6e-13 Score=95.49 Aligned_cols=117 Identities=14% Similarity=0.085 Sum_probs=71.6
Q ss_pred cCceeeeeeEEEEeCCe-EEEEEeCCCCcCh--------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 14 KGKTVEVGRAYFETDRK-HFTILDAPGHKSF--------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~-~~~iiDtpG~~~~--------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.+.|.+.....+.+.+. .+.+|||||+.+. .......+..+|++++|+|+++.... .....+...+..
T Consensus 72 ~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~---~~~~~~~~~l~~ 148 (204)
T cd01878 72 LFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYE---EQIETVEKVLKE 148 (204)
T ss_pred cceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChh---hHHHHHHHHHHH
Confidence 35566666666766665 8999999998431 11123346789999999999875410 000111222222
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
....+.| +++|+||+|+.... ... ..... ...+++++||++|.|++++.
T Consensus 149 ~~~~~~~-viiV~NK~Dl~~~~----~~~-------~~~~~------~~~~~~~~Sa~~~~gi~~l~ 197 (204)
T cd01878 149 LGAEDIP-MILVLNKIDLLDDE----ELE-------ERLEA------GRPDAVFISAKTGEGLDELL 197 (204)
T ss_pred cCcCCCC-EEEEEEccccCChH----HHH-------HHhhc------CCCceEEEEcCCCCCHHHHH
Confidence 2223567 89999999986321 111 11111 24689999999999998753
No 247
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.45 E-value=2.7e-13 Score=92.98 Aligned_cols=124 Identities=16% Similarity=0.148 Sum_probs=83.5
Q ss_pred HhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc
Q psy10355 11 KREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA 88 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
+..+.+..+.....+..++ ..+.+||+||++++.......++++|++|+|+|.++ +.+|.....|...+......
T Consensus 27 ~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~---~~S~~~~~~~~~~i~~~~~~ 103 (162)
T PF00071_consen 27 NYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTD---EESFENLKKWLEEIQKYKPE 103 (162)
T ss_dssp SSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTB---HHHHHTHHHHHHHHHHHSTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccc
Confidence 3334444555555666555 559999999999998888889999999999999977 34444444444444433332
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+.| +++++||.|+.... .... ++...+++.. +.+++++||+++.|+.++
T Consensus 104 ~~~-iivvg~K~D~~~~~--~v~~----~~~~~~~~~~------~~~~~e~Sa~~~~~v~~~ 152 (162)
T PF00071_consen 104 DIP-IIVVGNKSDLSDER--EVSV----EEAQEFAKEL------GVPYFEVSAKNGENVKEI 152 (162)
T ss_dssp TSE-EEEEEETTTGGGGS--SSCH----HHHHHHHHHT------TSEEEEEBTTTTTTHHHH
T ss_pred ccc-ceeeeccccccccc--cchh----hHHHHHHHHh------CCEEEEEECCCCCCHHHH
Confidence 456 89999999975311 1111 2234444544 369999999999998764
No 248
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.44 E-value=3.4e-13 Score=93.10 Aligned_cols=112 Identities=12% Similarity=0.143 Sum_probs=70.1
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH--cCCCcEEEEEeCCCCCCcc
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT--AGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~NK~Dl~~~~ 106 (156)
...+.+|||||++++.......++.+|++++|+|+++.. +|. ......+..+.. .+.| +++|+||+|+....
T Consensus 47 ~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~--~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~ 120 (171)
T cd00157 47 QVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPS---SFE--NVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDE 120 (171)
T ss_pred EEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHH---HHH--HHHHHHHHHHHhhCCCCC-EEEEEccHHhhhch
Confidence 457999999999988777777889999999999997632 110 001111222222 2577 89999999986432
Q ss_pred hhHHH-----HHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEAR-----YNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..... .....+....+....+ ..+++++||++|+|++++.
T Consensus 121 ~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l~ 165 (171)
T cd00157 121 NTLKKLEKGKEPITPEEGEKLAKEIG-----AIGYMECSALTQEGVKEVF 165 (171)
T ss_pred hhhhhcccCCCccCHHHHHHHHHHhC-----CeEEEEeecCCCCCHHHHH
Confidence 11000 0000222333334432 2389999999999998764
No 249
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.44 E-value=5.8e-13 Score=96.41 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=66.0
Q ss_pred EEeCCeEEEEEeCCCCcChHHHHHhhhh-cCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCCC
Q psy10355 25 FETDRKHFTILDAPGHKSFVPNMIGGTA-QADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMDD 102 (156)
Q Consensus 25 ~~~~~~~~~iiDtpG~~~~~~~~~~~~~-~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~Dl 102 (156)
+......+.+|||||++.+. ...+++ ++|++++|+|+++.. +|....++...+.... ..++| +|+|+||+|+
T Consensus 45 ~~~~~~~l~i~Dt~G~~~~~--~~~~~~~~ad~iilV~d~td~~---S~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl 118 (221)
T cd04148 45 VDGEESTLVVIDHWEQEMWT--EDSCMQYQGDAFVVVYSVTDRS---SFERASELRIQLRRNRQLEDRP-IILVGNKSDL 118 (221)
T ss_pred ECCEEEEEEEEeCCCcchHH--HhHHhhcCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhc
Confidence 33345779999999998332 234455 899999999998743 2221222222222111 13577 8999999997
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 103 PTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
....... .++ ...+.... +++++++||++|.|++++.
T Consensus 119 ~~~~~v~--~~~----~~~~a~~~------~~~~~e~SA~~~~gv~~l~ 155 (221)
T cd04148 119 ARSREVS--VQE----GRACAVVF------DCKFIETSAGLQHNVDELL 155 (221)
T ss_pred cccceec--HHH----HHHHHHHc------CCeEEEecCCCCCCHHHHH
Confidence 5321110 111 11222222 4689999999999998764
No 250
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.43 E-value=8.3e-12 Score=85.13 Aligned_cols=117 Identities=17% Similarity=0.123 Sum_probs=75.4
Q ss_pred ceeeeeeEEEEeCCeEEEEEeCCCCcChH--------HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH
Q psy10355 16 KTVEVGRAYFETDRKHFTILDAPGHKSFV--------PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT 87 (156)
Q Consensus 16 ~t~~~~~~~~~~~~~~~~iiDtpG~~~~~--------~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.+.......+...+..+.+|||||+.... ......+..+|++++|+|++... ..........+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~-------~~~~~~~~~~~~~ 109 (168)
T cd04163 37 TTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPI-------GEGDEFILELLKK 109 (168)
T ss_pred ceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCcc-------CchHHHHHHHHHH
Confidence 34444444455567889999999986432 23455678899999999998763 1333444455555
Q ss_pred cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 88 AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 88 ~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.| +++++||+|+... .....+ ....+.... ...+++++|++++.|++++.
T Consensus 110 ~~~~-~iiv~nK~Dl~~~---~~~~~~---~~~~~~~~~-----~~~~~~~~s~~~~~~~~~l~ 161 (168)
T cd04163 110 SKTP-VILVLNKIDLVKD---KEDLLP---LLEKLKELG-----PFAEIFPISALKGENVDELL 161 (168)
T ss_pred hCCC-EEEEEEchhcccc---HHHHHH---HHHHHHhcc-----CCCceEEEEeccCCChHHHH
Confidence 5678 8999999997521 111222 222222222 13588999999999998764
No 251
>KOG0469|consensus
Probab=99.38 E-value=3e-12 Score=100.36 Aligned_cols=94 Identities=23% Similarity=0.278 Sum_probs=81.5
Q ss_pred ccCccccHHHhhcCceeeeeeEEEEe----------------CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCC
Q psy10355 2 TGQGLWLRQKREKGKTVEVGRAYFET----------------DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 2 ~~~~~~~~~e~~~g~t~~~~~~~~~~----------------~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~ 65 (156)
++.+|.-+.|+|||+|+.++-..+.+ ++..+++||.|||-+|.+....+++..|+++.|+|+-+
T Consensus 54 ~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~ 133 (842)
T KOG0469|consen 54 TRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS 133 (842)
T ss_pred ccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccC
Confidence 45678889999999999988776532 34779999999999999999999999999999999999
Q ss_pred CccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 66 GEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
|. --|++..++++....+.+ +++.||+|++
T Consensus 134 Gv-------CVQTETVLrQA~~ERIkP-vlv~NK~DRA 163 (842)
T KOG0469|consen 134 GV-------CVQTETVLRQAIAERIKP-VLVMNKMDRA 163 (842)
T ss_pred ce-------EechHHHHHHHHHhhccc-eEEeehhhHH
Confidence 87 368899998888888875 8899999964
No 252
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.37 E-value=5e-12 Score=88.24 Aligned_cols=106 Identities=16% Similarity=0.065 Sum_probs=68.4
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcch-HHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQT-REHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||+.++...+..++..++++++|+|.++.. +++....+ ...+......+.| +++++||+|+......
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~ 124 (180)
T cd04137 49 YHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRK---SFEVVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQRQV 124 (180)
T ss_pred EEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcCcc
Confidence 56899999999999988889999999999999998743 11101111 1111111123567 8999999997531100
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
... ....+.+.. ..+++++||++|+|++++.
T Consensus 125 --~~~----~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~ 155 (180)
T cd04137 125 --STE----EGKELAESW------GAAFLESSARENENVEEAF 155 (180)
T ss_pred --CHH----HHHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 011 122222322 3589999999999998753
No 253
>KOG0071|consensus
Probab=99.33 E-value=2.1e-11 Score=80.69 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=78.3
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH----HHcCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA----KTAGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 92 (156)
|++.....+.+.+..|++||..|+.+.++.|..|+.+..++|||+|+.+.. . .....+.+..+ .....+
T Consensus 48 TvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~d---r---~eeAr~ELh~ii~~~em~~~~- 120 (180)
T KOG0071|consen 48 TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRD---R---IEEARNELHRIINDREMRDAI- 120 (180)
T ss_pred ccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchh---h---HHHHHHHHHHHhCCHhhhcce-
Confidence 445555566778999999999999999999999999999999999997632 0 01111121111 113466
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCc
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPL 148 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~ 148 (156)
+++..||-|++.+-.. ++ +..+++.-... ...|.+.|+||.+|.|+.
T Consensus 121 ~LvlANkQDlp~A~~p----qe----i~d~leLe~~r-~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 121 ILILANKQDLPDAMKP----QE----IQDKLELERIR-DRNWYVQPSCALSGDGLK 167 (180)
T ss_pred EEEEecCcccccccCH----HH----HHHHhcccccc-CCccEeeccccccchhHH
Confidence 8899999998754322 23 33333222221 136789999999999864
No 254
>KOG0466|consensus
Probab=99.32 E-value=4.9e-12 Score=93.83 Aligned_cols=108 Identities=27% Similarity=0.425 Sum_probs=86.4
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhH
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSE 109 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~ 109 (156)
+.+.|+|+|||.-+...+.....-.|++++++.+++.-- ++|+.+++....-....|++++.||+|+.. +
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCP------QPQTsEHLaaveiM~LkhiiilQNKiDli~----e 194 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCP------QPQTSEHLAAVEIMKLKHIIILQNKIDLIK----E 194 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCC------CCchhhHHHHHHHhhhceEEEEechhhhhh----H
Confidence 568999999999999999999999999999998875431 689999988887788888999999999873 3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 110 ARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
....+-.+++..+++.... ++.|++|+||--+.||+.+
T Consensus 195 ~~A~eq~e~I~kFi~~t~a---e~aPiiPisAQlkyNId~v 232 (466)
T KOG0466|consen 195 SQALEQHEQIQKFIQGTVA---EGAPIIPISAQLKYNIDVV 232 (466)
T ss_pred HHHHHHHHHHHHHHhcccc---CCCceeeehhhhccChHHH
Confidence 3334444556666665544 4679999999999998864
No 255
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.31 E-value=2.4e-11 Score=80.99 Aligned_cols=104 Identities=18% Similarity=0.137 Sum_probs=70.2
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHH-----HHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTRE-----HAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
+..+.+||+||+..+...+...++.+|++++|+|++.+.. ..... ........+.| +++++||+|+.
T Consensus 44 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~~ 115 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRES-------FENVKEWLLLILINKEGENIP-IILVGNKIDLP 115 (157)
T ss_pred EEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHH-------HHHHHHHHHHHHHhhccCCCc-EEEEEeccccc
Confidence 6789999999999988888889999999999999987541 11111 11223335677 89999999976
Q ss_pred CcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 104 TVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
........ . ........ ...+++++|+.++.|++++.
T Consensus 116 ~~~~~~~~--~----~~~~~~~~-----~~~~~~~~s~~~~~~i~~~~ 152 (157)
T cd00882 116 EERVVSEE--E----LAEQLAKE-----LGVPYFETSAKTGENVEELF 152 (157)
T ss_pred cccchHHH--H----HHHHHHhh-----cCCcEEEEecCCCCChHHHH
Confidence 43221110 0 01111111 25789999999999988653
No 256
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.30 E-value=6.3e-11 Score=84.73 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=58.7
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcC-CEEEEEEeCCCCccccccCCCcchHHHH----HHHH--HcCCCcEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQA-DLAVLVISARKGEFETGFDRGGQTREHA----MLAK--TAGVKHLVVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~-d~~ilvvD~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~ivv~NK~ 100 (156)
.+..+.+||||||.++...+..+++.+ +++|+|+|+.... ..+ ....+.+ .... ..++| +++++||+
T Consensus 46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~--~~~---~~~~~~l~~il~~~~~~~~~~p-vliv~NK~ 119 (203)
T cd04105 46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQ--KNL---KDVAEFLYDILTDLEKVKNKIP-VLIACNKQ 119 (203)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccch--hHH---HHHHHHHHHHHHHHhhccCCCC-EEEEecch
Confidence 367899999999999999999999998 9999999998742 000 1111111 1111 13677 89999999
Q ss_pred CCCCcchhHHHHHHHHHHHH
Q psy10355 101 DDPTVMWSEARYNECKDKIL 120 (156)
Q Consensus 101 Dl~~~~~~~~~~~~~~~~~~ 120 (156)
|+..+.......+.+.+++.
T Consensus 120 Dl~~a~~~~~i~~~le~ei~ 139 (203)
T cd04105 120 DLFTAKPAKKIKEQLEKELN 139 (203)
T ss_pred hhcccCCHHHHHHHHHHHHH
Confidence 98765444333444444444
No 257
>KOG0090|consensus
Probab=99.30 E-value=6.6e-11 Score=83.57 Aligned_cols=102 Identities=17% Similarity=0.184 Sum_probs=69.2
Q ss_pred ceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhh---cCCEEEEEEeCCCCccccccCCCcchHHHHH----HHH-H
Q psy10355 16 KTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTA---QADLAVLVISARKGEFETGFDRGGQTREHAM----LAK-T 87 (156)
Q Consensus 16 ~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~---~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~----~~~-~ 87 (156)
++++.....+..++....++|.|||.+.+.....++. .+-+++||||+.... +. .....+.+. ... .
T Consensus 68 tSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~--k~---vrdvaefLydil~~~~~~ 142 (238)
T KOG0090|consen 68 TSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFL--KN---VRDVAEFLYDILLDSRVK 142 (238)
T ss_pred eeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccc--hh---hHHHHHHHHHHHHhhccc
Confidence 4566777778888888999999999999988888887 789999999996532 00 011112221 111 1
Q ss_pred cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHH
Q psy10355 88 AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPY 122 (156)
Q Consensus 88 ~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 122 (156)
.+.|++++++||-|+..+...+.-.+.+++++..+
T Consensus 143 ~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~l 177 (238)
T KOG0090|consen 143 KNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKL 177 (238)
T ss_pred cCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHH
Confidence 34455999999999987765554455555665543
No 258
>KOG0072|consensus
Probab=99.30 E-value=1.6e-11 Score=81.53 Aligned_cols=118 Identities=15% Similarity=0.100 Sum_probs=75.6
Q ss_pred eeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcc-hHHHHHHHHHcCCCcEEEEEe
Q psy10355 20 VGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQ-TREHAMLAKTAGVKHLVVLIN 98 (156)
Q Consensus 20 ~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ivv~N 98 (156)
....++.+.+-++.+||..|+-.....|.-|+.+.|++|+|||+++.. ....... ...++..-...+.. +++++|
T Consensus 52 fnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~d---ris~a~~el~~mL~E~eLq~a~-llv~an 127 (182)
T KOG0072|consen 52 FNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRD---RISIAGVELYSMLQEEELQHAK-LLVFAN 127 (182)
T ss_pred cCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchh---hhhhhHHHHHHHhccHhhcCce-EEEEec
Confidence 344455667889999999999999999999999999999999997642 1110011 11112222223445 889999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
|+|...+....+....+. + ..++. ..+.+|.+||.+|+|+++.
T Consensus 128 KqD~~~~~t~~E~~~~L~--l-~~Lk~------r~~~Iv~tSA~kg~Gld~~ 170 (182)
T KOG0072|consen 128 KQDYSGALTRSEVLKMLG--L-QKLKD------RIWQIVKTSAVKGEGLDPA 170 (182)
T ss_pred cccchhhhhHHHHHHHhC--h-HHHhh------heeEEEeeccccccCCcHH
Confidence 999865432222111111 0 11111 2478999999999999874
No 259
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.29 E-value=2.4e-11 Score=87.39 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=68.8
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
....+.+|||||++++...+..++++++++++|+|.++.. +|.....+...+... ..++| +++++||+|+.....
T Consensus 56 ~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~-~~~~~-i~lv~nK~Dl~~~~~ 130 (215)
T PTZ00132 56 GPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRI---TYKNVPNWHRDIVRV-CENIP-IVLVGNKVDVKDRQV 130 (215)
T ss_pred eEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHh-CCCCC-EEEEEECccCccccC
Confidence 4478999999999999888888899999999999998743 121112222222211 23567 889999999753211
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.. . ...+.+.. ++.++++||++|.|++++
T Consensus 131 ~~---~-----~~~~~~~~------~~~~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 131 KA---R-----QITFHRKK------NLQYYDISAKSNYNFEKP 159 (215)
T ss_pred CH---H-----HHHHHHHc------CCEEEEEeCCCCCCHHHH
Confidence 11 1 11222222 468899999999998763
No 260
>KOG0052|consensus
Probab=99.29 E-value=1.6e-12 Score=98.95 Aligned_cols=124 Identities=51% Similarity=0.793 Sum_probs=105.4
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|++..|+++|++++...+.+....+.++++|.|||.+|.+.+.....++|++++++.+..+.++++.....+..++...
T Consensus 57 ~dk~~ae~~r~i~I~~~l~~~~t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehall 136 (391)
T KOG0052|consen 57 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 136 (391)
T ss_pred echhhhccccceEEEEEeecccceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhh
Confidence 58889999999999999999999999999999999999999999999999999999999777789999999999999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (156)
....+..++++.+||+|-....+...++.++.+......+..+.
T Consensus 137 a~tlgv~qliv~v~k~D~~~~~~s~~r~~ei~k~~~~~~~~~g~ 180 (391)
T KOG0052|consen 137 AFTLGVKQLIVGVNKMDSTEPPYSEARYEEIKKEVSSYIKKIGY 180 (391)
T ss_pred hccccceeeeEEeecccccCCCccccchhhhheeeeeeeecccc
Confidence 88888777899999999765555555666665555444444443
No 261
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.29 E-value=4.3e-11 Score=87.35 Aligned_cols=53 Identities=25% Similarity=0.252 Sum_probs=43.1
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcCh-------HHHHHhhhhcCCEEEEEEeCCCC
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSF-------VPNMIGGTAQADLAVLVISARKG 66 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~-------~~~~~~~~~~~d~~ilvvD~~~~ 66 (156)
.+.|.+...+.+.+++..+.+|||||+.+. .......++++|++++|+|+++.
T Consensus 31 ~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 31 EFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred CCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 467778888888899999999999998532 33566788999999999998653
No 262
>KOG1143|consensus
Probab=99.29 E-value=2.2e-11 Score=92.62 Aligned_cols=111 Identities=26% Similarity=0.325 Sum_probs=89.8
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhc--CCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcc
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQ--ADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~--~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
++-++|+|.+||.+|.+.++.++.+ .+++.+|+.+..|. ...+++++..+...++| ++++++|+|+..
T Consensus 248 SKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi-------~~tTrEHLgl~~AL~iP-fFvlvtK~Dl~~-- 317 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGI-------TWTTREHLGLIAALNIP-FFVLVTKMDLVD-- 317 (591)
T ss_pred cceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCC-------ccccHHHHHHHHHhCCC-eEEEEEeecccc--
Confidence 3679999999999999998888865 58999999999998 46789999999999999 899999999974
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCC--------------------CCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFNA--------------------AKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+..++...+++...+...|+.. .+-.|+|.+|..+|+|++.|+
T Consensus 318 --~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 318 --RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred --chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence 3344555566666666666642 234689999999999987654
No 263
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.28 E-value=1.2e-11 Score=87.13 Aligned_cols=111 Identities=12% Similarity=0.095 Sum_probs=67.4
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||++++.......++.+|++++++|.+... +|.... .|...+.. ....+| +++++||+|+......
T Consensus 49 ~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~---s~~~~~~~~~~~i~~-~~~~~p-iilvgnK~Dl~~~~~~ 123 (187)
T cd04129 49 VQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPD---SLENVRTKWIEEVRR-YCPNVP-VILVGLKKDLRQDAVA 123 (187)
T ss_pred EEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHH-hCCCCC-EEEEeeChhhhhCccc
Confidence 45899999999887666556778999999999997632 222111 12222221 123577 8999999997431110
Q ss_pred H-----HHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 E-----ARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. .+... .+....+.+..+ ..+++++||++|.|++++.
T Consensus 124 ~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~e~Sa~~~~~v~~~f 165 (187)
T cd04129 124 KEEYRTQRFVP-IQQGKRVAKEIG-----AKKYMECSALTGEGVDDVF 165 (187)
T ss_pred ccccccCCcCC-HHHHHHHHHHhC-----CcEEEEccCCCCCCHHHHH
Confidence 0 00000 011222333333 2479999999999998764
No 264
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.27 E-value=1.2e-11 Score=83.15 Aligned_cols=97 Identities=22% Similarity=0.267 Sum_probs=67.2
Q ss_pred EEEeCCCC----cChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 33 TILDAPGH----KSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 33 ~iiDtpG~----~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
.+|||||- ..|..........||.+++|.|+++... .|. + ..+...+.| +|-|+||+|+...
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~--~~p--P------~fa~~f~~p-vIGVITK~Dl~~~--- 104 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRS--VFP--P------GFASMFNKP-VIGVITKIDLPSD--- 104 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCc--cCC--c------hhhcccCCC-EEEEEECccCccc---
Confidence 45999994 4567777888889999999999987531 010 1 222334567 8999999998631
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
..+.+. ...+++..|+. .+|++|+.+|+|+++|+.
T Consensus 105 ~~~i~~----a~~~L~~aG~~-----~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 105 DANIER----AKKWLKNAGVK-----EIFEVSAVTGEGIEELKD 139 (143)
T ss_pred hhhHHH----HHHHHHHcCCC-----CeEEEECCCCcCHHHHHH
Confidence 222333 34455666663 569999999999998864
No 265
>KOG0395|consensus
Probab=99.27 E-value=2.3e-11 Score=86.52 Aligned_cols=107 Identities=21% Similarity=0.214 Sum_probs=75.5
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcEEEEEeCCCCCCcc
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~NK~Dl~~~~ 106 (156)
+...+.|+||+|++.|..+...+++.+++.++|++.++ ..+|+......+.+..... ..+| +++|+||+|+...-
T Consensus 49 ~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd---~~SF~~~~~l~~~I~r~~~~~~~P-ivlVGNK~Dl~~~R 124 (196)
T KOG0395|consen 49 EVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITD---RSSFEEAKQLREQILRVKGRDDVP-IILVGNKCDLERER 124 (196)
T ss_pred EEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCC---HHHHHHHHHHHHHHHHhhCcCCCC-EEEEEEcccchhcc
Confidence 34568899999999999999999999999999999988 4455545555555433332 3467 89999999986311
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.. ..++...+...+ .++++++||+...+++++
T Consensus 125 --~V----~~eeg~~la~~~------~~~f~E~Sak~~~~v~~~ 156 (196)
T KOG0395|consen 125 --QV----SEEEGKALARSW------GCAFIETSAKLNYNVDEV 156 (196)
T ss_pred --cc----CHHHHHHHHHhc------CCcEEEeeccCCcCHHHH
Confidence 11 112222223333 467999999999888764
No 266
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.25 E-value=9.4e-11 Score=83.76 Aligned_cols=71 Identities=15% Similarity=0.063 Sum_probs=54.1
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-------------------HcC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-------------------TAG 89 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~ 89 (156)
...+.+|||+|+++|...+..+++++|++|+|+|.++. .+|+....|...+.... ..+
T Consensus 53 ~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~---~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (202)
T cd04102 53 TFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNR---KSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQ 129 (202)
T ss_pred EEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcCh---HHHHHHHHHHHHHHHhhccccccccccccccccccCCCC
Confidence 35799999999999999999999999999999999884 34433344544443221 125
Q ss_pred CCcEEEEEeCCCCC
Q psy10355 90 VKHLVVLINKMDDP 103 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~ 103 (156)
+| +++|+||+|+.
T Consensus 130 ~P-iilVGnK~Dl~ 142 (202)
T cd04102 130 IP-LLVIGTKLDQI 142 (202)
T ss_pred ce-EEEEEECccch
Confidence 67 89999999985
No 267
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.25 E-value=8.3e-11 Score=80.38 Aligned_cols=122 Identities=19% Similarity=0.155 Sum_probs=74.0
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcC----------hHHHHHhhh---hcCCEEEEEEeCCCCccccccCCCcch
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKS----------FVPNMIGGT---AQADLAVLVISARKGEFETGFDRGGQT 78 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~----------~~~~~~~~~---~~~d~~ilvvD~~~~~~~~~~~~~~~~ 78 (156)
...|.|........ + ..+.+|||||+.. +......++ ..++++++++|..... ....
T Consensus 30 ~~~~~t~~~~~~~~--~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~-------~~~~ 99 (170)
T cd01876 30 KTPGKTQLINFFNV--N-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGP-------TEID 99 (170)
T ss_pred CCCCcceeEEEEEc--c-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCC-------CHhH
Confidence 34455554433322 2 3999999999744 222333333 3467889999987653 1333
Q ss_pred HHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 79 REHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 79 ~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
......+...+.| +++++||+|+.... ........+...++.. . ...+++++||+++.|+.++.+
T Consensus 100 ~~~~~~l~~~~~~-vi~v~nK~D~~~~~----~~~~~~~~~~~~l~~~-~---~~~~~~~~Sa~~~~~~~~l~~ 164 (170)
T cd01876 100 LEMLDWLEELGIP-FLVVLTKADKLKKS----ELAKALKEIKKELKLF-E---IDPPIILFSSLKGQGIDELRA 164 (170)
T ss_pred HHHHHHHHHcCCC-EEEEEEchhcCChH----HHHHHHHHHHHHHHhc-c---CCCceEEEecCCCCCHHHHHH
Confidence 4455666667778 89999999975321 2222333333333311 1 246899999999999887653
No 268
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.24 E-value=3.4e-10 Score=82.20 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=71.0
Q ss_pred eCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcc
Q psy10355 27 TDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 27 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
..+.+++++||||+. ..+...++.+|++++|+|++.+. ..+...++..+...+.|.+++++||+|+...
T Consensus 80 ~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~-------~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~- 148 (225)
T cd01882 80 GKKRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGF-------EMETFEFLNILQVHGFPRVMGVLTHLDLFKK- 148 (225)
T ss_pred cCCceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCC-------CHHHHHHHHHHHHcCCCeEEEEEeccccCCc-
Confidence 367889999999964 55666778999999999998776 3455666777777788855569999997632
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEK 145 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~ 145 (156)
........+.+...+...-+ ...+++++||++.-
T Consensus 149 --~~~~~~~~~~l~~~~~~~~~---~~~ki~~iSa~~~~ 182 (225)
T cd01882 149 --NKTLRKTKKRLKHRFWTEVY---QGAKLFYLSGIVHG 182 (225)
T ss_pred --HHHHHHHHHHHHHHHHHhhC---CCCcEEEEeeccCC
Confidence 22234444455442221111 24699999999874
No 269
>PLN00023 GTP-binding protein; Provisional
Probab=99.22 E-value=7.7e-11 Score=89.11 Aligned_cols=96 Identities=15% Similarity=0.060 Sum_probs=62.9
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH------------cCCCcEEEEE
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT------------AGVKHLVVLI 97 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ivv~ 97 (156)
..+.||||+|+++|...+..+++++|++|+|+|.++. .+|.....|...+..... .++| +++|+
T Consensus 83 v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr---~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ip-IILVG 158 (334)
T PLN00023 83 FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQR---RTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVP-YIVIG 158 (334)
T ss_pred EEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCH---HHHHHHHHHHHHHHHhcccccccccccccCCCCc-EEEEE
Confidence 5699999999999999999999999999999999873 333333344444433211 1367 89999
Q ss_pred eCCCCCCcchhHHHHHHHHHHHHHHHHHcCCC
Q psy10355 98 NKMDDPTVMWSEARYNECKDKILPYLKKLGFN 129 (156)
Q Consensus 98 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (156)
||+|+.........-....+....+++..++.
T Consensus 159 NK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 159 NKADIAPKEGTRGSSGNLVDAARQWVEKQGLL 190 (334)
T ss_pred ECccccccccccccccccHHHHHHHHHHcCCC
Confidence 99998532100000011234556666777653
No 270
>PRK13768 GTPase; Provisional
Probab=99.16 E-value=1.6e-10 Score=85.35 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=64.2
Q ss_pred CeEEEEEeCCCCcChH---HHHHhh---hhc--CCEEEEEEeCCCCccccccCCCcchHHHHHHH-----HHcCCCcEEE
Q psy10355 29 RKHFTILDAPGHKSFV---PNMIGG---TAQ--ADLAVLVISARKGEFETGFDRGGQTREHAMLA-----KTAGVKHLVV 95 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~---~~~~~~---~~~--~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~iv 95 (156)
+..+.+|||||+.++. ..+... +.. ++++++|+|+..+. .+.+......+ ...+.| +++
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~-------~~~d~~~~~~l~~~~~~~~~~~-~i~ 167 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAK-------TPSDFVSLLLLALSVQLRLGLP-QIP 167 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhC-------CHHHHHHHHHHHHHHHHHcCCC-EEE
Confidence 3479999999986532 222222 222 79999999997643 12222222211 146788 799
Q ss_pred EEeCCCCCCcchhHHHHHHHH--------------------HHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 96 LINKMDDPTVMWSEARYNECK--------------------DKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 96 v~NK~Dl~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+||+|+............+. ..+...++..+ ...+++++||++++|+++|.
T Consensus 168 v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~----~~~~vi~iSa~~~~gl~~L~ 239 (253)
T PRK13768 168 VLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETG----LPVRVIPVSAKTGEGFDELY 239 (253)
T ss_pred EEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHC----CCCcEEEEECCCCcCHHHHH
Confidence 999999864322211111111 01111222222 13589999999999998764
No 271
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.14 E-value=1.8e-10 Score=80.52 Aligned_cols=86 Identities=16% Similarity=0.198 Sum_probs=51.5
Q ss_pred CCeEEEEEeCCCCcChHHHHHhh---hhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH------H--cCCCcEEEE
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGG---TAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK------T--AGVKHLVVL 96 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~---~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~ivv 96 (156)
.+..+.++|+|||.++....... ...+.++|||+|++... .+..+...++. . .+.++++++
T Consensus 47 ~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~--------~~~~~~Ae~Ly~iL~~~~~~~~~~piLIa 118 (181)
T PF09439_consen 47 KGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQ--------KELRDVAEYLYDILSDTEVQKNKPPILIA 118 (181)
T ss_dssp CGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHH--------HHHHHHHHHHHHHHHHHHCCTT--EEEEE
T ss_pred CCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccch--------hhHHHHHHHHHHHHHhhhhccCCCCEEEE
Confidence 45679999999999987766665 78899999999997421 11221111111 1 233449999
Q ss_pred EeCCCCCCcchhHHHHHHHHHHHHH
Q psy10355 97 INKMDDPTVMWSEARYNECKDKILP 121 (156)
Q Consensus 97 ~NK~Dl~~~~~~~~~~~~~~~~~~~ 121 (156)
+||.|+..+.....-...+++++..
T Consensus 119 cNK~Dl~~A~~~~~Ik~~LE~Ei~~ 143 (181)
T PF09439_consen 119 CNKQDLFTAKPPKKIKKLLEKEIDK 143 (181)
T ss_dssp EE-TTSTT---HHHHHHHHHHHHHH
T ss_pred EeCccccccCCHHHHHHHHHHHHHH
Confidence 9999987665444434455555543
No 272
>KOG1423|consensus
Probab=99.13 E-value=4e-10 Score=83.74 Aligned_cols=135 Identities=14% Similarity=0.073 Sum_probs=84.0
Q ss_pred ccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCc------C------hHHHHHhhhhcCCEEEEEEeCCCCccccccCC
Q psy10355 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHK------S------FVPNMIGGTAQADLAVLVISARKGEFETGFDR 74 (156)
Q Consensus 7 ~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~------~------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~ 74 (156)
..+..++.-+|.....+.+..+..++.|.||||.- + +......++..||++++++|++...
T Consensus 97 v~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr------- 169 (379)
T KOG1423|consen 97 VSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATR------- 169 (379)
T ss_pred cccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCc-------
Confidence 34567778888999999999999999999999952 1 2334567778999999999998422
Q ss_pred CcchHHHHHHHH-HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHH---------HHHHHcCCCC-----------CCC
Q psy10355 75 GGQTREHAMLAK-TAGVKHLVVLINKMDDPTVMWSEARYNECKDKIL---------PYLKKLGFNA-----------AKD 133 (156)
Q Consensus 75 ~~~~~~~~~~~~-~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-----------~~~ 133 (156)
..-.-..+..+. ..++| -|++.||+|.... ...+-.+++.+. +..+.....+ ...
T Consensus 170 ~~l~p~vl~~l~~ys~ip-s~lvmnkid~~k~---k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshf 245 (379)
T KOG1423|consen 170 TPLHPRVLHMLEEYSKIP-SILVMNKIDKLKQ---KRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHF 245 (379)
T ss_pred CccChHHHHHHHHHhcCC-ceeeccchhcchh---hhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccc
Confidence 111222233233 24688 5999999997532 111111111110 0111111111 012
Q ss_pred CeEEEeecccCCCCccCCC
Q psy10355 134 LSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 134 ~~~i~~Sa~~g~gi~~l~~ 152 (156)
-.+|.+||++|+||++|++
T Consensus 246 e~vF~vSaL~G~Gikdlkq 264 (379)
T KOG1423|consen 246 ERVFMVSALYGEGIKDLKQ 264 (379)
T ss_pred eeEEEEecccccCHHHHHH
Confidence 2589999999999998864
No 273
>KOG0393|consensus
Probab=99.11 E-value=2.4e-10 Score=80.51 Aligned_cols=134 Identities=14% Similarity=0.103 Sum_probs=84.9
Q ss_pred ccccHHHhhcCceeeeeeEEEEeC-C--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccC-CCcchHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETD-R--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFD-RGGQTRE 80 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~-~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~-~~~~~~~ 80 (156)
++.+++++-+.+. +--...+..+ + ..+.+|||+|+++|-..+.-.+.++|+++++++..+.. +|. ....|..
T Consensus 26 ~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~---S~~nv~~kW~p 101 (198)
T KOG0393|consen 26 TNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPE---SFENVKSKWIP 101 (198)
T ss_pred cCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChh---hHHHHHhhhhH
Confidence 3456667666665 3333334442 4 45899999999999887778999999999999886643 221 1233433
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHH---------HHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 81 HAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKD---------KILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 81 ~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.... .+.| +|+|++|.||.. +......+.. +.....+++|. ..++++||++..|+.+..
T Consensus 102 Ei~~~c-p~vp-iiLVGtk~DLr~---d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga-----~~y~EcSa~tq~~v~~vF 171 (198)
T KOG0393|consen 102 EIKHHC-PNVP-IILVGTKADLRD---DPSTLEKLQRQGLEPVTYEQGLELAKEIGA-----VKYLECSALTQKGVKEVF 171 (198)
T ss_pred HHHhhC-CCCC-EEEEeehHHhhh---CHHHHHHHHhccCCcccHHHHHHHHHHhCc-----ceeeeehhhhhCCcHHHH
Confidence 333332 4688 999999999852 1222222221 12233344442 578999999999977654
Q ss_pred C
Q psy10355 152 I 152 (156)
Q Consensus 152 ~ 152 (156)
+
T Consensus 172 ~ 172 (198)
T KOG0393|consen 172 D 172 (198)
T ss_pred H
Confidence 3
No 274
>COG2262 HflX GTPases [General function prediction only]
Probab=99.10 E-value=5.6e-10 Score=85.76 Aligned_cols=119 Identities=13% Similarity=0.072 Sum_probs=80.7
Q ss_pred HHhhcCceeeeeeEEEEeC-CeEEEEEeCCCCcCh--------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHH
Q psy10355 10 QKREKGKTVEVGRAYFETD-RKHFTILDAPGHKSF--------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTRE 80 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~-~~~~~iiDtpG~~~~--------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~ 80 (156)
.+-+.-.|.+++...+.+. +..+.+.||-|+-+- .+.+......+|.+++|+|++++.+ ..+...
T Consensus 219 ~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~------~~~~~~ 292 (411)
T COG2262 219 VADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEI------LEKLEA 292 (411)
T ss_pred ccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhH------HHHHHH
Confidence 4455667889999999887 689999999998543 3456666788999999999988642 122233
Q ss_pred HHHHHHH---cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 81 HAMLAKT---AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 81 ~~~~~~~---~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
....+.. ..+| +|+|.||+|+..... ....+ ... .. +.+++||++|+|++.|++
T Consensus 293 v~~vL~el~~~~~p-~i~v~NKiD~~~~~~-------~~~~~----~~~-----~~-~~v~iSA~~~~gl~~L~~ 349 (411)
T COG2262 293 VEDVLAEIGADEIP-IILVLNKIDLLEDEE-------ILAEL----ERG-----SP-NPVFISAKTGEGLDLLRE 349 (411)
T ss_pred HHHHHHHcCCCCCC-EEEEEecccccCchh-------hhhhh----hhc-----CC-CeEEEEeccCcCHHHHHH
Confidence 3333333 3467 899999999763211 01111 111 01 479999999999998764
No 275
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.09 E-value=6.2e-10 Score=79.98 Aligned_cols=95 Identities=12% Similarity=-0.005 Sum_probs=61.5
Q ss_pred cHHHhhcCceeeeeeEEEEeC--CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 8 LRQKREKGKTVEVGRAYFETD--RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 8 ~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
+..+..+++............ ..++.+|||+|++++...+..++.+++++++++|..... ..++....+...+...
T Consensus 30 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~--~~~~~~~~~~~~l~~~ 107 (219)
T COG1100 30 FPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRE--SSDELTEEWLEELREL 107 (219)
T ss_pred CcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccch--hhhHHHHHHHHHHHHh
Confidence 334444444444333333333 467999999999999999999999999999999997622 1111122222222222
Q ss_pred HHcCCCcEEEEEeCCCCCCc
Q psy10355 86 KTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 86 ~~~~~~~~ivv~NK~Dl~~~ 105 (156)
...+.| ++++.||+|+...
T Consensus 108 ~~~~~~-iilv~nK~Dl~~~ 126 (219)
T COG1100 108 APDDVP-ILLVGNKIDLFDE 126 (219)
T ss_pred CCCCce-EEEEecccccccc
Confidence 222467 8999999998643
No 276
>KOG0463|consensus
Probab=99.09 E-value=3.8e-10 Score=86.11 Aligned_cols=111 Identities=26% Similarity=0.328 Sum_probs=88.6
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhc--CCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQ--ADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~--~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
+-++|||.+||++|.+.+...+.+ .|...+.+.++.|+ ...+.+++..+....+| +.+|++|+|++.++.
T Consensus 219 KviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-------iGmTKEHLgLALaL~VP-VfvVVTKIDMCPANi 290 (641)
T KOG0463|consen 219 KVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-------IGMTKEHLGLALALHVP-VFVVVTKIDMCPANI 290 (641)
T ss_pred eeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-------eeccHHhhhhhhhhcCc-EEEEEEeeccCcHHH
Confidence 569999999999999998888854 79999999999998 47889999999999999 899999999986554
Q ss_pred hHHHHHHHHHHHHHHHHHcCCC--------------------CCCCCeEEEeecccCCCCccCCC
Q psy10355 108 SEARYNECKDKILPYLKKLGFN--------------------AAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
- ++..+.+..+++..||. .+..+|+|.+|..+|+|++.|++
T Consensus 291 L----qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm 351 (641)
T KOG0463|consen 291 L----QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM 351 (641)
T ss_pred H----HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH
Confidence 3 33444455555544442 23467899999999999987764
No 277
>KOG0074|consensus
Probab=99.05 E-value=4.5e-10 Score=74.58 Aligned_cols=120 Identities=20% Similarity=0.178 Sum_probs=78.5
Q ss_pred eeeeeeEEEEeCC-eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEE
Q psy10355 17 TVEVGRAYFETDR-KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLV 94 (156)
Q Consensus 17 t~~~~~~~~~~~~-~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i 94 (156)
|-+.....+.+.+ ..+++||..|++..+.-|..|+.+.|++|+|+|+++. +.|+... ...+.+...+...+| +.
T Consensus 48 T~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~---krfeE~~~el~ELleeeKl~~vp-vl 123 (185)
T KOG0074|consen 48 TNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDE---KRFEEISEELVELLEEEKLAEVP-VL 123 (185)
T ss_pred cCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCch---HhHHHHHHHHHHHhhhhhhhccc-ee
Confidence 3445556666666 8999999999999999999999999999999998874 3333111 111222222234567 88
Q ss_pred EEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 95 VLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 95 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
+..||-|+..+... +++..++ ...++.. ..|.+-.+||++++|+..
T Consensus 124 IfankQdlltaa~~----eeia~kl----nl~~lrd-RswhIq~csals~eg~~d 169 (185)
T KOG0074|consen 124 IFANKQDLLTAAKV----EEIALKL----NLAGLRD-RSWHIQECSALSLEGSTD 169 (185)
T ss_pred ehhhhhHHHhhcch----HHHHHhc----chhhhhh-ceEEeeeCccccccCccC
Confidence 89999998643221 2222111 1112211 357889999999999764
No 278
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.04 E-value=1.4e-09 Score=81.47 Aligned_cols=120 Identities=19% Similarity=0.159 Sum_probs=73.5
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcCh--------HHHHHhhhh-cCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSF--------VPNMIGGTA-QADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~--------~~~~~~~~~-~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+-+|.....+.++.+...++++||||..+- -.+...+++ -.++++|++|++... ++....|.. .+..
T Consensus 199 PFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~c---gy~lE~Q~~-L~~e 274 (346)
T COG1084 199 PFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETC---GYSLEEQIS-LLEE 274 (346)
T ss_pred CccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCcccc---CCCHHHHHH-HHHH
Confidence 456777888888888899999999998542 234555555 467899999997632 221111111 1222
Q ss_pred HH-HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AK-TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~-~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+ ..+.| +++|+||+|+. .....+++...+. ..+ ......+|+..+.+++.++
T Consensus 275 Ik~~f~~p-~v~V~nK~D~~----~~e~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~d~~~ 328 (346)
T COG1084 275 IKELFKAP-IVVVINKIDIA----DEEKLEEIEASVL----EEG-----GEEPLKISATKGCGLDKLR 328 (346)
T ss_pred HHHhcCCC-eEEEEeccccc----chhHHHHHHHHHH----hhc-----cccccceeeeehhhHHHHH
Confidence 22 24556 89999999976 2333444333322 221 1234667888888877654
No 279
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.02 E-value=2.4e-09 Score=73.31 Aligned_cols=86 Identities=16% Similarity=0.135 Sum_probs=55.7
Q ss_pred HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHH
Q psy10355 44 VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYL 123 (156)
Q Consensus 44 ~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 123 (156)
.+......+++|++++|+|++++. ..+.......+...+.| +++++||+|+.. ...... ...+.
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~-------~~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~----~~~~~~----~~~~~ 66 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPE-------LTRSRKLERYVLELGKK-LLIVLNKADLVP----KEVLEK----WKSIK 66 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCc-------ccCCHHHHHHHHhCCCc-EEEEEEhHHhCC----HHHHHH----HHHHH
Confidence 345566677899999999997754 13334444444556778 899999999852 111111 11122
Q ss_pred HHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 124 KKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 124 ~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+.. +.+++++||++|.|++.|.
T Consensus 67 ~~~------~~~~~~iSa~~~~gi~~L~ 88 (156)
T cd01859 67 ESE------GIPVVYVSAKERLGTKILR 88 (156)
T ss_pred HhC------CCcEEEEEccccccHHHHH
Confidence 211 3578999999999998764
No 280
>KOG1489|consensus
Probab=99.02 E-value=3.5e-09 Score=79.05 Aligned_cols=119 Identities=15% Similarity=0.097 Sum_probs=69.7
Q ss_pred CceeeeeeEEEEeCCeE-EEEEeCCCCcCh----HH---HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH
Q psy10355 15 GKTVEVGRAYFETDRKH-FTILDAPGHKSF----VP---NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK 86 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~-~~iiDtpG~~~~----~~---~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
-+|..+..+...+++.. +++-|.||.-+- .. .-..-+..|+..+||+|.+.+.. ...-.+....+..+.
T Consensus 228 FTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~---~~p~~~~~lL~~ELe 304 (366)
T KOG1489|consen 228 FTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQL---RNPWQQLQLLIEELE 304 (366)
T ss_pred eeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCccc---CCHHHHHHHHHHHHH
Confidence 45677777777777765 999999997321 11 12223345699999999987621 000112222222222
Q ss_pred H-----cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 87 T-----AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 87 ~-----~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. ...| .++|+||+|++.+ .. +.++++.+.+. +..++|+||++|+|++.|.
T Consensus 305 ~yek~L~~rp-~liVaNKiD~~ea--e~-------~~l~~L~~~lq-----~~~V~pvsA~~~egl~~ll 359 (366)
T KOG1489|consen 305 LYEKGLADRP-ALIVANKIDLPEA--EK-------NLLSSLAKRLQ-----NPHVVPVSAKSGEGLEELL 359 (366)
T ss_pred HHhhhhccCc-eEEEEeccCchhH--HH-------HHHHHHHHHcC-----CCcEEEeeeccccchHHHH
Confidence 1 2356 6899999997521 11 11233333331 2359999999999998764
No 281
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.99 E-value=1.3e-09 Score=81.59 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=44.4
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcCh-------HHHHHhhhhcCCEEEEEEeCCCCc
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSF-------VPNMIGGTAQADLAVLVISARKGE 67 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~-------~~~~~~~~~~~d~~ilvvD~~~~~ 67 (156)
-+|..+.++.+++++.+++++|+||.-.- .+...+..++||.+++|+|+....
T Consensus 95 FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 95 FTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDP 154 (365)
T ss_pred ceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCCh
Confidence 56788889999999999999999997432 356888899999999999997543
No 282
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.99 E-value=1.6e-08 Score=73.57 Aligned_cols=124 Identities=19% Similarity=0.265 Sum_probs=77.5
Q ss_pred hcCceeeeeeEEEEe-CCeEEEEEeCCCCcChHHH-----HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH
Q psy10355 13 EKGKTVEVGRAYFET-DRKHFTILDAPGHKSFVPN-----MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK 86 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~-----~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.-|.|.+.....+.. +...+.+||+||+..+... ....++++.++|+|+|+....+... .......+..+.
T Consensus 30 ~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~---l~~~~~~i~~l~ 106 (232)
T PF04670_consen 30 RLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDED---LAYLSDCIEALR 106 (232)
T ss_dssp G-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHH---HHHHHHHHHHHH
T ss_pred ccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHH---HHHHHHHHHHHH
Confidence 457788777777764 5569999999999877554 5667799999999999974321100 011223333333
Q ss_pred H--cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeeccc
Q psy10355 87 T--AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGEL 143 (156)
Q Consensus 87 ~--~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 143 (156)
. .++. +-+++.|+|+...+.....+...++.+...+...+.. .+.++.||-+.
T Consensus 107 ~~sp~~~-v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~---~~~~~~TSI~D 161 (232)
T PF04670_consen 107 QYSPNIK-VFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIE---DITFFLTSIWD 161 (232)
T ss_dssp HHSTT-E-EEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-T---SEEEEEE-TTS
T ss_pred HhCCCCe-EEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhcccc---ceEEEeccCcC
Confidence 3 3455 8889999998776666666777778888877776542 46889999775
No 283
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.97 E-value=7.7e-09 Score=73.56 Aligned_cols=108 Identities=19% Similarity=0.130 Sum_probs=64.9
Q ss_pred eEEEEEeCCCCcChHHHH-----HhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCC
Q psy10355 30 KHFTILDAPGHKSFVPNM-----IGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPT 104 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~-----~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~ 104 (156)
..+.+|||||+.+..... ...+..+|+++++.|. .. .......+..+...+.| +++|+||+|+..
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~--~~-------~~~d~~~~~~l~~~~~~-~ilV~nK~D~~~ 121 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST--RF-------SSNDVKLAKAIQCMGKK-FYFVRTKVDRDL 121 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC--CC-------CHHHHHHHHHHHHhCCC-EEEEEecccchh
Confidence 479999999986432211 2225678988887543 22 23344555666666778 899999999843
Q ss_pred cch---------hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecc--cCCCCccC
Q psy10355 105 VMW---------SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGE--LEKNPLLL 150 (156)
Q Consensus 105 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~--~g~gi~~l 150 (156)
.+. ....++++++.+...++..+. ...+++.+|+. .+.|+..|
T Consensus 122 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~---~~p~v~~vS~~~~~~~~~~~l 175 (197)
T cd04104 122 SNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV---SEPPVFLVSNFDPSDYDFPKL 175 (197)
T ss_pred hhhhccccccccHHHHHHHHHHHHHHHHHHcCC---CCCCEEEEeCCChhhcChHHH
Confidence 222 112244444455555544332 13479999998 45665544
No 284
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.96 E-value=7e-09 Score=67.48 Aligned_cols=79 Identities=20% Similarity=0.322 Sum_probs=58.3
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcCh---------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSF---------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~---------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
..++.|.......+.+++..+.++||||...- .......+..+|++++|+|+.... ......++
T Consensus 29 ~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~-------~~~~~~~~ 101 (116)
T PF01926_consen 29 NIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPI-------TEDDKNIL 101 (116)
T ss_dssp SSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHS-------HHHHHHHH
T ss_pred ccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCC-------CHHHHHHH
Confidence 34678888877888899999999999998542 223555568899999999986632 13345555
Q ss_pred HHHHHcCCCcEEEEEeC
Q psy10355 83 MLAKTAGVKHLVVLINK 99 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK 99 (156)
..+. .+.| +++|+||
T Consensus 102 ~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 102 RELK-NKKP-IILVLNK 116 (116)
T ss_dssp HHHH-TTSE-EEEEEES
T ss_pred HHHh-cCCC-EEEEEcC
Confidence 6665 6667 8999998
No 285
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.96 E-value=1.2e-08 Score=68.74 Aligned_cols=80 Identities=21% Similarity=0.183 Sum_probs=52.9
Q ss_pred HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc--CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHH
Q psy10355 45 PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA--GVKHLVVLINKMDDPTVMWSEARYNECKDKILPY 122 (156)
Q Consensus 45 ~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 122 (156)
+.....+..+|++++|+|+.++. ..+.......+... +.| +++++||+|+.. +..... ....
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~-------~~~~~~l~~~l~~~~~~k~-~iivlNK~DL~~----~~~~~~----~~~~ 66 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPL-------LFRPPDLERYVKEVDPRKK-NILLLNKADLLT----EEQRKA----WAEY 66 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCc-------ccCCHHHHHHHHhccCCCc-EEEEEechhcCC----HHHHHH----HHHH
Confidence 35667889999999999998765 23344444555544 778 799999999852 111222 2223
Q ss_pred HHHcCCCCCCCCeEEEeecccCCC
Q psy10355 123 LKKLGFNAAKDLSFMPCSGELEKN 146 (156)
Q Consensus 123 ~~~~~~~~~~~~~~i~~Sa~~g~g 146 (156)
++.. ..+++++||++|.+
T Consensus 67 ~~~~------~~~ii~iSa~~~~~ 84 (141)
T cd01857 67 FKKE------GIVVVFFSALKENA 84 (141)
T ss_pred HHhc------CCeEEEEEecCCCc
Confidence 3333 24789999999875
No 286
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.95 E-value=5.2e-09 Score=73.93 Aligned_cols=94 Identities=13% Similarity=-0.041 Sum_probs=56.9
Q ss_pred ChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHH-
Q psy10355 42 SFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKIL- 120 (156)
Q Consensus 42 ~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~- 120 (156)
.+...+..+++.+|++++|+|+++.. ..+...+ .....+.| +++|+||+|+....... ..++....
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~--------~~~~~~l-~~~~~~~~-~ilV~NK~Dl~~~~~~~---~~~~~~~~~ 89 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFP--------GSLIPRL-RLFGGNNP-VILVGNKIDLLPKDKNL---VRIKNWLRA 89 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCC--------CccchhH-HHhcCCCc-EEEEEEchhcCCCCCCH---HHHHHHHHH
Confidence 35778888899999999999997643 1222222 12234667 89999999986322111 11111110
Q ss_pred HHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 121 PYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 121 ~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+..++. ..+++++||++|.|+++|.
T Consensus 90 ~~~~~~~~~---~~~i~~vSA~~~~gi~eL~ 117 (190)
T cd01855 90 KAAAGLGLK---PKDVILISAKKGWGVEELI 117 (190)
T ss_pred HHHhhcCCC---cccEEEEECCCCCCHHHHH
Confidence 011222221 1368999999999998864
No 287
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.94 E-value=1.7e-09 Score=79.53 Aligned_cols=93 Identities=17% Similarity=0.148 Sum_probs=59.4
Q ss_pred cChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHH
Q psy10355 41 KSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKIL 120 (156)
Q Consensus 41 ~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 120 (156)
+++......+++++|++++|+|+.+... ++ ......+..+...++| +++|+||+||... . ... .+..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~--s~---~~l~r~l~~~~~~~i~-~vIV~NK~DL~~~---~-~~~--~~~~- 90 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPEL--SL---NQLDRFLVVAEAQNIE-PIIVLNKIDLLDD---E-DME--KEQL- 90 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCC--CH---HHHHHHHHHHHHCCCC-EEEEEECcccCCC---H-HHH--HHHH-
Confidence 4556666678999999999999986431 11 1122223334456788 7999999998531 1 111 1112
Q ss_pred HHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 121 PYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 121 ~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
..++.. +.+++.+||++|+|+++|.+
T Consensus 91 ~~~~~~------g~~v~~~SAktg~gi~eLf~ 116 (245)
T TIGR00157 91 DIYRNI------GYQVLMTSSKNQDGLKELIE 116 (245)
T ss_pred HHHHHC------CCeEEEEecCCchhHHHHHh
Confidence 222333 46899999999999988764
No 288
>KOG1191|consensus
Probab=98.94 E-value=1.3e-09 Score=85.41 Aligned_cols=124 Identities=17% Similarity=0.169 Sum_probs=81.0
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcC---------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKS---------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~---------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
.+.|+|.|.....++.+|+.+.+.||+|.++ -.......+..+|++++|+|+..+.+ .....+.
T Consensus 298 pv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t-------~sd~~i~ 370 (531)
T KOG1191|consen 298 PVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDT-------ESDLKIA 370 (531)
T ss_pred CCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEeccccccc-------ccchHHH
Confidence 4789999999999999999999999999976 13446667788999999999966553 2333333
Q ss_pred HHHHHcC-----------CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeE-EEeecccCCCCccC
Q psy10355 83 MLAKTAG-----------VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSF-MPCSGELEKNPLLL 150 (156)
Q Consensus 83 ~~~~~~~-----------~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~Sa~~g~gi~~l 150 (156)
+.+...+ ..+++++.||+|+.... .++......+....+. ...++ ..+|+++++|++.|
T Consensus 371 ~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~------~~~~~~~~~~~~~~~~---~~~~i~~~vs~~tkeg~~~L 441 (531)
T KOG1191|consen 371 RILETEGVGLVVIVNKMEKQRIILVANKSDLVSKI------PEMTKIPVVYPSAEGR---SVFPIVVEVSCTTKEGCERL 441 (531)
T ss_pred HHHHHhccceEEEeccccccceEEEechhhccCcc------ccccCCceeccccccC---cccceEEEeeechhhhHHHH
Confidence 3333211 13378999999986431 1111111111111111 13444 45999999999877
Q ss_pred C
Q psy10355 151 G 151 (156)
Q Consensus 151 ~ 151 (156)
.
T Consensus 442 ~ 442 (531)
T KOG1191|consen 442 S 442 (531)
T ss_pred H
Confidence 4
No 289
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.90 E-value=8.1e-09 Score=71.85 Aligned_cols=91 Identities=16% Similarity=0.138 Sum_probs=58.3
Q ss_pred CCCCc-ChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHH
Q psy10355 37 APGHK-SFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNEC 115 (156)
Q Consensus 37 tpG~~-~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~ 115 (156)
-|||- +...+....++++|++++|+|++.+.. .........+ .+.| .++++||+|+.. ......
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~-------~~~~~i~~~~--~~k~-~ilVlNK~Dl~~----~~~~~~- 66 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLS-------SRNPLLEKIL--GNKP-RIIVLNKADLAD----PKKTKK- 66 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccC-------cCChhhHhHh--cCCC-EEEEEehhhcCC----hHHHHH-
Confidence 36763 456778889999999999999976541 2222232222 3567 799999999852 111111
Q ss_pred HHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 116 KDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
....++.. ..+++++||++|.|+++|.
T Consensus 67 ---~~~~~~~~------~~~vi~iSa~~~~gi~~L~ 93 (171)
T cd01856 67 ---WLKYFESK------GEKVLFVNAKSGKGVKKLL 93 (171)
T ss_pred ---HHHHHHhc------CCeEEEEECCCcccHHHHH
Confidence 11222221 2468999999999998764
No 290
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.88 E-value=7.5e-09 Score=70.98 Aligned_cols=83 Identities=17% Similarity=0.086 Sum_probs=51.9
Q ss_pred HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH--cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHH
Q psy10355 47 MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT--AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLK 124 (156)
Q Consensus 47 ~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 124 (156)
+..++..+|++++|+|+..+. ......+...+.. .+.| +++|+||+|+.. +.. +...+.. +.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~-------~~~~~~i~~~l~~~~~~~p-~ilVlNKiDl~~----~~~---~~~~~~~-~~ 65 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPM-------GTRCKHVEEYLKKEKPHKH-LIFVLNKCDLVP----TWV---TARWVKI-LS 65 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCc-------cccCHHHHHHHHhccCCCC-EEEEEEchhcCC----HHH---HHHHHHH-Hh
Confidence 456788999999999998754 1334444444443 2477 799999999852 111 1222222 11
Q ss_pred HcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 125 KLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 125 ~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+. + ...++++||+++.|++.|
T Consensus 66 ~~-~----~~~~~~iSa~~~~~~~~L 86 (157)
T cd01858 66 KE-Y----PTIAFHASINNPFGKGSL 86 (157)
T ss_pred cC-C----cEEEEEeeccccccHHHH
Confidence 11 1 123689999999998765
No 291
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.84 E-value=9.3e-08 Score=71.51 Aligned_cols=102 Identities=18% Similarity=0.248 Sum_probs=63.2
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHH---------------------HHH-----hhhh--cCCEEEEEEe
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVP---------------------NMI-----GGTA--QADLAVLVIS 62 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~---------------------~~~-----~~~~--~~d~~ilvvD 62 (156)
.+.+++......+..++ .++.+|||||+.++.. ... ..+. .+++++++++
T Consensus 44 ~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~ 123 (276)
T cd01850 44 DKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIE 123 (276)
T ss_pred CCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEe
Confidence 33444555555566666 4699999999754321 111 1111 3678899998
Q ss_pred CCC-CccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcC
Q psy10355 63 ARK-GEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127 (156)
Q Consensus 63 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (156)
++. +. ...+.+.+..+.. ++| +++|+||+|+.. .......++.+...++..+
T Consensus 124 ~~~~~l-------~~~D~~~lk~l~~-~v~-vi~VinK~D~l~----~~e~~~~k~~i~~~l~~~~ 176 (276)
T cd01850 124 PTGHGL-------KPLDIEFMKRLSK-RVN-IIPVIAKADTLT----PEELKEFKQRIMEDIEEHN 176 (276)
T ss_pred CCCCCC-------CHHHHHHHHHHhc-cCC-EEEEEECCCcCC----HHHHHHHHHHHHHHHHHcC
Confidence 864 33 2334566666654 688 899999999863 2234456666766666655
No 292
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.83 E-value=9.6e-08 Score=67.81 Aligned_cols=85 Identities=15% Similarity=0.181 Sum_probs=59.9
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChH-------HH----HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFV-------PN----MIGGTAQADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~-------~~----~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
.+|.|.........+++.++.++||||+.+.. .. ...+..++|++++|+|+.. . ...+...
T Consensus 32 ~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~-------t~~d~~~ 103 (196)
T cd01852 32 ASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-F-------TEEEEQA 103 (196)
T ss_pred CCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-c-------CHHHHHH
Confidence 56889999999999999999999999986541 11 2223467899999999876 3 2445555
Q ss_pred HHHHHHc-C---CCcEEEEEeCCCCCCc
Q psy10355 82 AMLAKTA-G---VKHLVVLINKMDDPTV 105 (156)
Q Consensus 82 ~~~~~~~-~---~~~~ivv~NK~Dl~~~ 105 (156)
+..+... | ..++++++|+.|....
T Consensus 104 l~~l~~~fg~~~~~~~ivv~T~~d~l~~ 131 (196)
T cd01852 104 VETLQELFGEKVLDHTIVLFTRGDDLEG 131 (196)
T ss_pred HHHHHHHhChHhHhcEEEEEECccccCC
Confidence 5544432 2 2347899999996543
No 293
>KOG4252|consensus
Probab=98.82 E-value=2.5e-10 Score=78.62 Aligned_cols=104 Identities=19% Similarity=0.121 Sum_probs=68.9
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
++..+.+|||+|++.|-..+..++++|.+.++|++.++. .+|+....|.+.+.. .-..+| .+++-||+|+.....
T Consensus 67 Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr---~SFea~~~w~~kv~~-e~~~IP-tV~vqNKIDlveds~ 141 (246)
T KOG4252|consen 67 EDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDR---YSFEATLEWYNKVQK-ETERIP-TVFVQNKIDLVEDSQ 141 (246)
T ss_pred HHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccH---HHHHHHHHHHHHHHH-HhccCC-eEEeeccchhhHhhh
Confidence 456688999999999999999999999999999998873 344433344433221 224688 799999999863211
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCc
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPL 148 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~ 148 (156)
. -+.+.....+.+ ...++.+|++...|+.
T Consensus 142 ~------~~~evE~lak~l------~~RlyRtSvked~NV~ 170 (246)
T KOG4252|consen 142 M------DKGEVEGLAKKL------HKRLYRTSVKEDFNVM 170 (246)
T ss_pred c------chHHHHHHHHHh------hhhhhhhhhhhhhhhH
Confidence 1 112222222332 2466888888776653
No 294
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.81 E-value=2.6e-08 Score=74.49 Aligned_cols=90 Identities=16% Similarity=0.167 Sum_probs=58.0
Q ss_pred CCCc-ChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHH
Q psy10355 38 PGHK-SFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECK 116 (156)
Q Consensus 38 pG~~-~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~ 116 (156)
|||. +..+.....+..+|++++|+|+..+. ..........+ .+.| +++|+||+|+.. .....
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~-------~~~~~~i~~~l--~~kp-~IiVlNK~DL~~----~~~~~--- 67 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPL-------SSRNPMIDEIR--GNKP-RLIVLNKADLAD----PAVTK--- 67 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCC-------CCCChhHHHHH--CCCC-EEEEEEccccCC----HHHHH---
Confidence 7774 44667888889999999999997654 12222233322 3567 799999999852 11111
Q ss_pred HHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 117 DKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+ ....++.. +.+++++||+++.|++.|.
T Consensus 68 ~-~~~~~~~~------~~~vi~iSa~~~~gi~~L~ 95 (276)
T TIGR03596 68 Q-WLKYFEEK------GIKALAINAKKGKGVKKII 95 (276)
T ss_pred H-HHHHHHHc------CCeEEEEECCCcccHHHHH
Confidence 1 11122222 2478999999999988763
No 295
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.80 E-value=6.2e-09 Score=67.77 Aligned_cols=83 Identities=19% Similarity=0.202 Sum_probs=52.2
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH--cCCCc
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT--AGVKH 92 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 92 (156)
+.+..............+.+||++|+..+.......+..+|++++|+|.++.. ++....+....+..... .++|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~---s~~~~~~~~~~l~~~~~~~~~~p- 110 (119)
T PF08477_consen 35 EITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPE---SLEYLSQLLKWLKNIRKRDKNIP- 110 (119)
T ss_dssp TSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHH---HHHHHHHHHHHHHHHHHHSSCSE-
T ss_pred CCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChH---HHHHHHHHHHHHHHHHccCCCCC-
Confidence 33444333444444556999999999988877666699999999999998743 11111111112222222 3577
Q ss_pred EEEEEeCCC
Q psy10355 93 LVVLINKMD 101 (156)
Q Consensus 93 ~ivv~NK~D 101 (156)
+++++||.|
T Consensus 111 iilv~nK~D 119 (119)
T PF08477_consen 111 IILVGNKSD 119 (119)
T ss_dssp EEEEEE-TC
T ss_pred EEEEEeccC
Confidence 899999998
No 296
>PRK12289 GTPase RsgA; Reviewed
Probab=98.79 E-value=3.9e-08 Score=75.76 Aligned_cols=85 Identities=19% Similarity=0.099 Sum_probs=55.4
Q ss_pred HHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHH
Q psy10355 47 MIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKK 125 (156)
Q Consensus 47 ~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 125 (156)
...+++++|.+++|+|+.+..+ .. .....+..+...++| +++|+||+|+.. ...... ....++.
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~------~~~~LdR~L~~a~~~~ip-~ILVlNK~DLv~----~~~~~~----~~~~~~~ 147 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPL------DPWQLSRFLVKAESTGLE-IVLCLNKADLVS----PTEQQQ----WQDRLQQ 147 (352)
T ss_pred echhhhcCCEEEEEEECCCCCC------CHHHHHHHHHHHHHCCCC-EEEEEEchhcCC----hHHHHH----HHHHHHh
Confidence 4456889999999999975431 11 223344444456888 799999999862 111111 2222333
Q ss_pred cCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 126 LGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 126 ~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
. +++++++||++|+|+++|..
T Consensus 148 ~------g~~v~~iSA~tg~GI~eL~~ 168 (352)
T PRK12289 148 W------GYQPLFISVETGIGLEALLE 168 (352)
T ss_pred c------CCeEEEEEcCCCCCHHHHhh
Confidence 3 35789999999999988754
No 297
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.78 E-value=4.1e-08 Score=67.21 Aligned_cols=77 Identities=18% Similarity=0.136 Sum_probs=48.1
Q ss_pred CEEEEEEeCCCCccccccCCCcchHHHH-HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy10355 55 DLAVLVISARKGEFETGFDRGGQTREHA-MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKD 133 (156)
Q Consensus 55 d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (156)
|++++|+|+.++. ........ ..+...+.| +|+|+||+|+.. ... +.+.+..+ .... .
T Consensus 1 Dvvl~VvD~~~p~-------~~~~~~i~~~~~~~~~~p-~IiVlNK~Dl~~----~~~---~~~~~~~~-~~~~-----~ 59 (155)
T cd01849 1 DVILEVLDARDPL-------GTRSPDIERVLIKEKGKK-LILVLNKADLVP----KEV---LRKWLAYL-RHSY-----P 59 (155)
T ss_pred CEEEEEEeccCCc-------cccCHHHHHHHHhcCCCC-EEEEEechhcCC----HHH---HHHHHHHH-HhhC-----C
Confidence 7899999997754 12233333 344456788 899999999853 111 11111111 2111 2
Q ss_pred CeEEEeecccCCCCccCCC
Q psy10355 134 LSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 134 ~~~i~~Sa~~g~gi~~l~~ 152 (156)
.+++++||++|.|++.|.+
T Consensus 60 ~~ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 60 TIPFKISATNGQGIEKKES 78 (155)
T ss_pred ceEEEEeccCCcChhhHHH
Confidence 4789999999999988754
No 298
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.76 E-value=9.4e-08 Score=72.21 Aligned_cols=118 Identities=20% Similarity=0.193 Sum_probs=69.2
Q ss_pred CceeeeeeEEEEe-CCeEEEEEeCCCCc-----------ChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 15 GKTVEVGRAYFET-DRKHFTILDAPGHK-----------SFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 15 g~t~~~~~~~~~~-~~~~~~iiDtpG~~-----------~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
-+|..+..+.+.. .+..|++-|.||.- +|.++.+ .|.++++|||.+... ..+.......+.
T Consensus 191 FTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE----Rt~vL~hviD~s~~~---~~dp~~~~~~i~ 263 (369)
T COG0536 191 FTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIE----RTRVLLHVIDLSPID---GRDPIEDYQTIR 263 (369)
T ss_pred cccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHH----hhheeEEEEecCccc---CCCHHHHHHHHH
Confidence 4566666666665 55669999999973 3454444 458999999997532 001112222233
Q ss_pred HHHHH-----cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 83 MLAKT-----AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 83 ~~~~~-----~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+.. .+.| .++|+||+|++. ..+.++.+++.+.. ..++ ....++||.+++|++.|-
T Consensus 264 ~EL~~Y~~~L~~K~-~ivv~NKiD~~~---~~e~~~~~~~~l~~---~~~~-----~~~~~ISa~t~~g~~~L~ 325 (369)
T COG0536 264 NELEKYSPKLAEKP-RIVVLNKIDLPL---DEEELEELKKALAE---ALGW-----EVFYLISALTREGLDELL 325 (369)
T ss_pred HHHHHhhHHhccCc-eEEEEeccCCCc---CHHHHHHHHHHHHH---hcCC-----CcceeeehhcccCHHHHH
Confidence 33322 3567 699999999653 23334444433332 2222 122339999999998763
No 299
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.71 E-value=2.2e-07 Score=70.75 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=28.4
Q ss_pred eEEEEEeCCCC----cChHH---HHHhhhhcCCEEEEEEeCCC
Q psy10355 30 KHFTILDAPGH----KSFVP---NMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 30 ~~~~iiDtpG~----~~~~~---~~~~~~~~~d~~ilvvD~~~ 65 (156)
..+.+|||||. +++.. .....+++||++++|+|+..
T Consensus 69 v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 69 VPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred ceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 57999999998 33333 45556899999999999963
No 300
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.71 E-value=5.7e-08 Score=73.05 Aligned_cols=91 Identities=12% Similarity=0.145 Sum_probs=58.0
Q ss_pred CCCCc-ChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHH
Q psy10355 37 APGHK-SFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNEC 115 (156)
Q Consensus 37 tpG~~-~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~ 115 (156)
-|||. +-.+.....+..+|++++|+|+..+. ........... .+.| +++|+||+|+.. ......
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~-------~~~~~~l~~~~--~~kp-~iiVlNK~DL~~----~~~~~~- 71 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPL-------SSENPMIDKII--GNKP-RLLILNKSDLAD----PEVTKK- 71 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCC-------CCCChhHHHHh--CCCC-EEEEEEchhcCC----HHHHHH-
Confidence 47774 34566788889999999999997654 12222222222 2667 799999999852 111111
Q ss_pred HHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 116 KDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
....++.. +.+++++||+++.|++.|.
T Consensus 72 ---~~~~~~~~------~~~vi~vSa~~~~gi~~L~ 98 (287)
T PRK09563 72 ---WIEYFEEQ------GIKALAINAKKGQGVKKIL 98 (287)
T ss_pred ---HHHHHHHc------CCeEEEEECCCcccHHHHH
Confidence 12222222 2478999999999988764
No 301
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.70 E-value=6e-08 Score=75.12 Aligned_cols=96 Identities=17% Similarity=0.095 Sum_probs=62.4
Q ss_pred CcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHH
Q psy10355 40 HKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKI 119 (156)
Q Consensus 40 ~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~ 119 (156)
.++|......+.+.++++++|+|+.+.. ..+...+.... .+.| +++|+||+|+...... .+.+++.+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~--------~s~~~~l~~~~-~~~p-iilV~NK~DLl~k~~~---~~~~~~~l 116 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE--------GSLIPELKRFV-GGNP-VLLVGNKIDLLPKSVN---LSKIKEWM 116 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC--------CCccHHHHHHh-CCCC-EEEEEEchhhCCCCCC---HHHHHHHH
Confidence 3467777777778999999999996643 22333332222 2557 8999999998643211 23344444
Q ss_pred HHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 120 LPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 120 ~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...++..++. ...++++||++|.|+++|.
T Consensus 117 ~~~~k~~g~~---~~~i~~vSAk~g~gv~eL~ 145 (360)
T TIGR03597 117 KKRAKELGLK---PVDIILVSAKKGNGIDELL 145 (360)
T ss_pred HHHHHHcCCC---cCcEEEecCCCCCCHHHHH
Confidence 4555655542 1258999999999998764
No 302
>KOG0096|consensus
Probab=98.69 E-value=6.5e-08 Score=67.34 Aligned_cols=102 Identities=17% Similarity=0.167 Sum_probs=70.3
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
...|..|||+|++.+......++-++.|+++.+|.+.... +...++|..-+...+ .++| +++++||+|.....
T Consensus 58 ~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t---~~n~~rwhrd~~rv~-~NiP-iv~cGNKvDi~~r~-- 130 (216)
T KOG0096|consen 58 QIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFT---YKNVPRWHRDLVRVR-ENIP-IVLCGNKVDIKARK-- 130 (216)
T ss_pred cEEEEeeecccceeecccccccEEecceeEEEeeeeehhh---hhcchHHHHHHHHHh-cCCC-eeeeccceeccccc--
Confidence 3789999999999999999999999999999999875431 222344544433333 3589 99999999953210
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
.+. +...+....+..++.+||++..|.+.
T Consensus 131 ------~k~------k~v~~~rkknl~y~~iSaksn~Nfek 159 (216)
T KOG0096|consen 131 ------VKA------KPVSFHRKKNLQYYEISAKSNYNFER 159 (216)
T ss_pred ------ccc------ccceeeecccceeEEeeccccccccc
Confidence 111 11122222467899999999888764
No 303
>KOG1673|consensus
Probab=98.69 E-value=4.7e-08 Score=66.05 Aligned_cols=127 Identities=12% Similarity=0.072 Sum_probs=82.0
Q ss_pred ccHHHhhcCceeeeeeEEEEe--CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH-H
Q psy10355 7 WLRQKREKGKTVEVGRAYFET--DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA-M 83 (156)
Q Consensus 7 ~~~~e~~~g~t~~~~~~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~ 83 (156)
...+|++....+..-...+.. -...|.+||..|++++..+...+...+-+++|.+|.++... -.....| +
T Consensus 44 ~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~T-------LnSi~~WY~ 116 (205)
T KOG1673|consen 44 EYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRST-------LNSIKEWYR 116 (205)
T ss_pred hhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHH-------HHHHHHHHH
Confidence 344555444444444444444 44669999999999999999999999999999999987531 1122222 3
Q ss_pred HHHHcC---CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 84 LAKTAG---VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 84 ~~~~~~---~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
+++..+ +| |++++|.|+.- ...++..+.+..+...+.+-. +.+.|.+|+.+..|+.+
T Consensus 117 QAr~~NktAiP--ilvGTKyD~fi-~lp~e~Q~~I~~qar~YAk~m------nAsL~F~Sts~sINv~K 176 (205)
T KOG1673|consen 117 QARGLNKTAIP--ILVGTKYDLFI-DLPPELQETISRQARKYAKVM------NASLFFCSTSHSINVQK 176 (205)
T ss_pred HHhccCCccce--EEeccchHhhh-cCCHHHHHHHHHHHHHHHHHh------CCcEEEeeccccccHHH
Confidence 344333 55 78999999632 223333444444455555544 46789999999888765
No 304
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.68 E-value=4.4e-08 Score=71.71 Aligned_cols=114 Identities=13% Similarity=0.088 Sum_probs=52.1
Q ss_pred EEEEEeCCCCcChHHHHHh------hhh--cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 31 HFTILDAPGHKSFVPNMIG------GTA--QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 31 ~~~iiDtpG~~~~~~~~~~------~~~--~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
.+.++|||||.++...+.. .+. ..=++++++|+........| ..........+.+.+.| .|.|+||+|+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f--~s~~L~s~s~~~~~~lP-~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKF--VSSLLLSLSIMLRLELP-HVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHH--HHHHHHHHHHHHHHTSE-EEEEE--GGG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhH--HHHHHHHHHHHhhCCCC-EEEeeeccCc
Confidence 7999999999776443222 222 33489999998653200000 01111122334446899 6999999998
Q ss_pred CCcchhHHHHHHHH-------------HHH-HHHHHHcCCCCCCCC-eEEEeecccCCCCccC
Q psy10355 103 PTVMWSEARYNECK-------------DKI-LPYLKKLGFNAAKDL-SFMPCSGELEKNPLLL 150 (156)
Q Consensus 103 ~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~~-~~i~~Sa~~g~gi~~l 150 (156)
.... .....+... +.+ ..+++.+. ..... +++|+|+.+++|++.|
T Consensus 169 ~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~--~~~~~~~f~pls~~~~~~~~~L 228 (238)
T PF03029_consen 169 LSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLD--DFGLVIRFIPLSSKDGEGMEEL 228 (238)
T ss_dssp S-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCC--CCSSS---EE-BTTTTTTHHHH
T ss_pred ccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh--hcCCCceEEEEECCChHHHHHH
Confidence 7522 111111110 111 11222221 11134 8999999999998875
No 305
>PRK00098 GTPase RsgA; Reviewed
Probab=98.66 E-value=8.3e-08 Score=72.54 Aligned_cols=82 Identities=23% Similarity=0.325 Sum_probs=52.7
Q ss_pred hhcCCEEEEEEeCCCCccccccCCCcch-HHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCC
Q psy10355 51 TAQADLAVLVISARKGEFETGFDRGGQT-REHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFN 129 (156)
Q Consensus 51 ~~~~d~~ilvvD~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (156)
++++|++++|+|+.+..+ .... ...+..+...++| +++|+||+|+.. ....... ....++..
T Consensus 78 aaniD~vllV~d~~~p~~------~~~~idr~L~~~~~~~ip-~iIVlNK~DL~~---~~~~~~~----~~~~~~~~--- 140 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDF------STDLLDRFLVLAEANGIK-PIIVLNKIDLLD---DLEEARE----LLALYRAI--- 140 (298)
T ss_pred eecCCEEEEEEECCCCCC------CHHHHHHHHHHHHHCCCC-EEEEEEhHHcCC---CHHHHHH----HHHHHHHC---
Confidence 489999999999965431 1111 2333445567888 799999999852 1111111 22223333
Q ss_pred CCCCCeEEEeecccCCCCccCCC
Q psy10355 130 AAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 130 ~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+.+++++||++|+|+++|.+
T Consensus 141 ---g~~v~~vSA~~g~gi~~L~~ 160 (298)
T PRK00098 141 ---GYDVLELSAKEGEGLDELKP 160 (298)
T ss_pred ---CCeEEEEeCCCCccHHHHHh
Confidence 35899999999999988754
No 306
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.65 E-value=1.8e-07 Score=71.44 Aligned_cols=105 Identities=11% Similarity=0.062 Sum_probs=62.2
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
.++.+.|+||+|...-. ......+|.+++|+++..+. ....... ....+. -++|+||+|+....
T Consensus 147 ~g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd----------~iq~~k~-gi~E~a-DIiVVNKaDl~~~~- 210 (332)
T PRK09435 147 AGYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGD----------ELQGIKK-GIMELA-DLIVINKADGDNKT- 210 (332)
T ss_pred cCCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchH----------HHHHHHh-hhhhhh-heEEeehhcccchh-
Confidence 46889999999987322 22466799999998743332 1111110 011223 28899999986422
Q ss_pred hHHHHHHHHHHHHHHHHHcCCC-CCCCCeEEEeecccCCCCccCC
Q psy10355 108 SEARYNECKDKILPYLKKLGFN-AAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.......++...+....-. +....|++++||++|+|+++|-
T Consensus 211 ---~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~ 252 (332)
T PRK09435 211 ---AARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIW 252 (332)
T ss_pred ---HHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHH
Confidence 2233344444444332100 0113589999999999998864
No 307
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.60 E-value=1.7e-07 Score=71.40 Aligned_cols=87 Identities=17% Similarity=0.228 Sum_probs=62.7
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCC--CcchHH---HHHHHHH-
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR--GGQTRE---HAMLAKT- 87 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~--~~~~~~---~~~~~~~- 87 (156)
+.-|.+.....+.+++..+.+||++|++..++.|..++.+++++++|+|.++.. +...+. .....+ .+..+..
T Consensus 145 r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d-~~~~e~~~~nrl~esl~~f~~i~~~ 223 (317)
T cd00066 145 RVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYD-QVLFEDESTNRMQESLNLFDSICNS 223 (317)
T ss_pred ecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcc-cccccCCcchHHHHHHHHHHHHHhC
Confidence 345677888889999999999999999999999999999999999999997632 000000 011222 2222221
Q ss_pred ---cCCCcEEEEEeCCCC
Q psy10355 88 ---AGVKHLVVLINKMDD 102 (156)
Q Consensus 88 ---~~~~~~ivv~NK~Dl 102 (156)
.+.| +++++||.|+
T Consensus 224 ~~~~~~p-ill~~NK~D~ 240 (317)
T cd00066 224 RWFANTS-IILFLNKKDL 240 (317)
T ss_pred ccccCCC-EEEEccChHH
Confidence 3577 9999999995
No 308
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.59 E-value=4.1e-07 Score=70.00 Aligned_cols=89 Identities=12% Similarity=0.155 Sum_probs=63.9
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCC--CcchH---HHHHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR--GGQTR---EHAMLAKT 87 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~--~~~~~---~~~~~~~~ 87 (156)
-+--|.+.....+.+++..+.+||.+|++..++.|..++.++++++||+|.++.. +..++. ..... ..+..+..
T Consensus 167 ~r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d-~~~~Ed~~~nrl~esl~~f~~l~~ 245 (342)
T smart00275 167 SRVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYD-QVLEEDESTNRMQESLNLFESICN 245 (342)
T ss_pred eeCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccc-cchhccCcchHHHHHHHHHHHHHc
Confidence 3455677788889999999999999999999999999999999999999998631 000000 01122 22222221
Q ss_pred ----cCCCcEEEEEeCCCCC
Q psy10355 88 ----AGVKHLVVLINKMDDP 103 (156)
Q Consensus 88 ----~~~~~~ivv~NK~Dl~ 103 (156)
.+.| +++++||.|+.
T Consensus 246 ~~~~~~~p-iil~~NK~D~~ 264 (342)
T smart00275 246 SRWFANTS-IILFLNKIDLF 264 (342)
T ss_pred CccccCCc-EEEEEecHHhH
Confidence 3567 99999999964
No 309
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.57 E-value=2.3e-07 Score=69.80 Aligned_cols=82 Identities=22% Similarity=0.168 Sum_probs=52.3
Q ss_pred hhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCC
Q psy10355 51 TAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNA 130 (156)
Q Consensus 51 ~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (156)
+.++|.+++|+|+.++.+ + .......+..+...++| +++|+||+|+... .. . .. ........
T Consensus 76 ~anvD~vllV~d~~~p~~----s-~~~ldr~L~~~~~~~ip-~iIVlNK~DL~~~---~~---~-~~-~~~~~~~~---- 137 (287)
T cd01854 76 AANVDQLVIVVSLNEPFF----N-PRLLDRYLVAAEAAGIE-PVIVLTKADLLDD---EE---E-EL-ELVEALAL---- 137 (287)
T ss_pred EEeCCEEEEEEEcCCCCC----C-HHHHHHHHHHHHHcCCC-EEEEEEHHHCCCh---HH---H-HH-HHHHHHhC----
Confidence 788999999999977531 0 01223334444556888 7999999998632 11 0 11 11111222
Q ss_pred CCCCeEEEeecccCCCCccCCC
Q psy10355 131 AKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 131 ~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+.+++++||++|.|++.|..
T Consensus 138 --g~~v~~vSA~~g~gi~~L~~ 157 (287)
T cd01854 138 --GYPVLAVSAKTGEGLDELRE 157 (287)
T ss_pred --CCeEEEEECCCCccHHHHHh
Confidence 46899999999999987754
No 310
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.56 E-value=5e-07 Score=68.35 Aligned_cols=105 Identities=12% Similarity=0.032 Sum_probs=59.0
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
.++.+.|+||||... ........+|.++++.++..+. ....... ...+.| .++++||+|+.....
T Consensus 125 ~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~~----------el~~~~~-~l~~~~-~ivv~NK~Dl~~~~~ 189 (300)
T TIGR00750 125 AGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTGD----------DLQGIKA-GLMEIA-DIYVVNKADGEGATN 189 (300)
T ss_pred CCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCccH----------HHHHHHH-HHhhhc-cEEEEEcccccchhH
Confidence 578899999999642 2334566788888886553321 1111111 123567 589999999864321
Q ss_pred hHHHHHHHHHHHHHHHHHcCCC-CCCCCeEEEeecccCCCCccCC
Q psy10355 108 SEARYNECKDKILPYLKKLGFN-AAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.......+...+...... .....+++++||++|+|+++|.
T Consensus 190 ----~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~ 230 (300)
T TIGR00750 190 ----VTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELW 230 (300)
T ss_pred ----HHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHH
Confidence 111111111111111100 0012469999999999998864
No 311
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.54 E-value=1.1e-06 Score=64.90 Aligned_cols=111 Identities=18% Similarity=0.209 Sum_probs=74.5
Q ss_pred EeCCeEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC-CcEEEEE
Q psy10355 26 ETDRKHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV-KHLVVLI 97 (156)
Q Consensus 26 ~~~~~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ivv~ 97 (156)
.+++..+++|||||..+ +......++...|.+++++|+.+.. ...+...++.....+. .++++++
T Consensus 83 ~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~dra-------L~~d~~f~~dVi~~~~~~~~i~~V 155 (296)
T COG3596 83 SYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRA-------LGTDEDFLRDVIILGLDKRVLFVV 155 (296)
T ss_pred hccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCcc-------ccCCHHHHHHHHHhccCceeEEEE
Confidence 35678899999999976 6677888889999999999997765 2445555555554433 3489999
Q ss_pred eCCCCCCcc--h-------hHHHHHHHHHH---HHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 98 NKMDDPTVM--W-------SEARYNECKDK---ILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 98 NK~Dl~~~~--~-------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
|-+|++... | .+...+.+.++ +..++++ -.|++..|+..+-|++.|
T Consensus 156 tQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~-------V~pV~~~~~r~~wgl~~l 213 (296)
T COG3596 156 TQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE-------VKPVVAVSGRLPWGLKEL 213 (296)
T ss_pred ehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh-------cCCeEEeccccCccHHHH
Confidence 999975441 1 11222222222 3333333 248888888888888765
No 312
>KOG2486|consensus
Probab=98.53 E-value=2.8e-07 Score=67.92 Aligned_cols=125 Identities=15% Similarity=0.077 Sum_probs=78.0
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCC----------cChHHHHHhhhhc---CCEEEEEEeCCCCccccccCCCcchH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGH----------KSFVPNMIGGTAQ---ADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~----------~~~~~~~~~~~~~---~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
..|.|..+ ++..-+..+.++|.||+ .++.+.+..|+.+ --.+.+++|++.+. .+.+.
T Consensus 169 K~g~Tq~i---n~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i-------~~~D~ 238 (320)
T KOG2486|consen 169 KNGKTQAI---NHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPI-------QPTDN 238 (320)
T ss_pred CCccceee---eeeeccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCC-------CCCCh
Confidence 44544433 34445688999999994 2345556666543 34677888998887 57788
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcch--hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMW--SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.++.++.+.++| +.+|.||||...... .......++..+..+.++. +. ...|++.+|+.++.|++.|.
T Consensus 239 ~~i~~~ge~~VP-~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~-f~--~~~Pw~~~Ssvt~~Grd~Ll 308 (320)
T KOG2486|consen 239 PEIAWLGENNVP-MTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV-FL--VDLPWIYVSSVTSLGRDLLL 308 (320)
T ss_pred HHHHHHhhcCCC-eEEeeehhhhhhhccccccCccccceeehhhccccc-ee--ccCCceeeecccccCceeee
Confidence 889999999999 899999999632110 0000000011011111111 11 24578899999999999875
No 313
>KOG0077|consensus
Probab=98.50 E-value=6.5e-07 Score=61.17 Aligned_cols=86 Identities=21% Similarity=0.173 Sum_probs=62.3
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH-HHHHHcCCCcEEE
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA-MLAKTAGVKHLVV 95 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~iv 95 (156)
|..++...+...+..|+-+|..||..-+..|..++..+|++++.||+.+. .+|.......+.+ ......+.| +++
T Consensus 51 TlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~---er~~es~~eld~ll~~e~la~vp-~li 126 (193)
T KOG0077|consen 51 TLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQ---ERFAESKKELDALLSDESLATVP-FLI 126 (193)
T ss_pred CcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhH---HHhHHHHHHHHHHHhHHHHhcCc-cee
Confidence 44455556778899999999999999999999999999999999999763 2222222222222 222235788 799
Q ss_pred EEeCCCCCCcc
Q psy10355 96 LINKMDDPTVM 106 (156)
Q Consensus 96 v~NK~Dl~~~~ 106 (156)
..||+|.+.+.
T Consensus 127 lgnKId~p~a~ 137 (193)
T KOG0077|consen 127 LGNKIDIPYAA 137 (193)
T ss_pred ecccccCCCcc
Confidence 99999987654
No 314
>PRK12288 GTPase RsgA; Reviewed
Probab=98.47 E-value=1e-06 Score=67.89 Aligned_cols=83 Identities=14% Similarity=0.127 Sum_probs=51.2
Q ss_pred hhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCC
Q psy10355 51 TAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNA 130 (156)
Q Consensus 51 ~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (156)
..++|.+++|++..... ++ ......+..+...++| .++|+||+|+.... ....+.+ ....++..
T Consensus 118 aANvD~vlIV~s~~p~~---s~---~~Ldr~L~~a~~~~i~-~VIVlNK~DL~~~~----~~~~~~~-~~~~y~~~---- 181 (347)
T PRK12288 118 AANIDQIVIVSAVLPEL---SL---NIIDRYLVACETLGIE-PLIVLNKIDLLDDE----GRAFVNE-QLDIYRNI---- 181 (347)
T ss_pred EEEccEEEEEEeCCCCC---CH---HHHHHHHHHHHhcCCC-EEEEEECccCCCcH----HHHHHHH-HHHHHHhC----
Confidence 46789999999876533 11 1222333444556788 68999999986321 1111222 22223333
Q ss_pred CCCCeEEEeecccCCCCccCC
Q psy10355 131 AKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 131 ~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+.+++++||++|+|+++|.
T Consensus 182 --g~~v~~vSA~tg~GideL~ 200 (347)
T PRK12288 182 --GYRVLMVSSHTGEGLEELE 200 (347)
T ss_pred --CCeEEEEeCCCCcCHHHHH
Confidence 3589999999999998765
No 315
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.43 E-value=2.7e-06 Score=62.35 Aligned_cols=82 Identities=16% Similarity=0.089 Sum_probs=56.7
Q ss_pred CceeeeeeEEEEeCC-eEEEEEeCCCCcCh-------------HHHHHhhhhc-CCEEEEEEeCCCCccccccCCCcch-
Q psy10355 15 GKTVEVGRAYFETDR-KHFTILDAPGHKSF-------------VPNMIGGTAQ-ADLAVLVISARKGEFETGFDRGGQT- 78 (156)
Q Consensus 15 g~t~~~~~~~~~~~~-~~~~iiDtpG~~~~-------------~~~~~~~~~~-~d~~ilvvD~~~~~~~~~~~~~~~~- 78 (156)
+++-+.....+...+ ..|+++||||.... ..++..|+++ .+.+++|+|+..+.. .+.
T Consensus 109 ~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~-------~~d~ 181 (240)
T smart00053 109 GISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLA-------NSDA 181 (240)
T ss_pred cccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCC-------chhH
Confidence 444444444444433 57999999998521 2346677774 458999999987762 333
Q ss_pred HHHHHHHHHcCCCcEEEEEeCCCCCC
Q psy10355 79 REHAMLAKTAGVKHLVVLINKMDDPT 104 (156)
Q Consensus 79 ~~~~~~~~~~~~~~~ivv~NK~Dl~~ 104 (156)
.++.+.+...+.+ .++|+||+|...
T Consensus 182 l~ia~~ld~~~~r-ti~ViTK~D~~~ 206 (240)
T smart00053 182 LKLAKEVDPQGER-TIGVITKLDLMD 206 (240)
T ss_pred HHHHHHHHHcCCc-EEEEEECCCCCC
Confidence 5677777777888 799999999763
No 316
>KOG1532|consensus
Probab=98.42 E-value=6.9e-07 Score=65.94 Aligned_cols=119 Identities=12% Similarity=0.166 Sum_probs=65.7
Q ss_pred CeEEEEEeCCCCcChH------HHHHhhhh-c-CCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 29 RKHFTILDAPGHKSFV------PNMIGGTA-Q-ADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~------~~~~~~~~-~-~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
..++.++||||+-.-. .....++. . .-++++|+|..+--....| -.+.......+.+.+.| +|++.||.
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tF--MSNMlYAcSilyktklp-~ivvfNK~ 191 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTF--MSNMLYACSILYKTKLP-FIVVFNKT 191 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhH--HHHHHHHHHHHHhccCC-eEEEEecc
Confidence 3679999999985421 11111222 2 2478889998543210000 12223333555667889 89999999
Q ss_pred CCCCcchhH---HHHHHHHHHHHH--------HHHHcCCCC---CCCCeEEEeecccCCCCccC
Q psy10355 101 DDPTVMWSE---ARYNECKDKILP--------YLKKLGFNA---AKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 101 Dl~~~~~~~---~~~~~~~~~~~~--------~~~~~~~~~---~~~~~~i~~Sa~~g~gi~~l 150 (156)
|+....+.. .+++..++.+.+ .....++.- .++...+.+|+.+|.|.+.+
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf 255 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDF 255 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHH
Confidence 987654322 123443333331 000000000 13568899999999998865
No 317
>PRK01889 GTPase RsgA; Reviewed
Probab=98.37 E-value=1.7e-06 Score=67.01 Aligned_cols=80 Identities=16% Similarity=0.090 Sum_probs=54.0
Q ss_pred hhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCC
Q psy10355 51 TAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNA 130 (156)
Q Consensus 51 ~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (156)
+.++|.+++|+++..+.. .......+..+...+++ .++|+||+||... . +...+.+... .
T Consensus 110 aANvD~vliV~s~~p~~~------~~~ldr~L~~a~~~~i~-piIVLNK~DL~~~---~---~~~~~~~~~~----~--- 169 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFN------LRRIERYLALAWESGAE-PVIVLTKADLCED---A---EEKIAEVEAL----A--- 169 (356)
T ss_pred EEeCCEEEEEEecCCCCC------hhHHHHHHHHHHHcCCC-EEEEEEChhcCCC---H---HHHHHHHHHh----C---
Confidence 578999999999965441 12344566667778999 5889999998631 1 1111222221 1
Q ss_pred CCCCeEEEeecccCCCCccCC
Q psy10355 131 AKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 131 ~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.+++++||++|.|++.|.
T Consensus 170 -~g~~Vi~vSa~~g~gl~~L~ 189 (356)
T PRK01889 170 -PGVPVLAVSALDGEGLDVLA 189 (356)
T ss_pred -CCCcEEEEECCCCccHHHHH
Confidence 25689999999999998865
No 318
>KOG1490|consensus
Probab=98.37 E-value=1e-06 Score=69.65 Aligned_cols=109 Identities=14% Similarity=0.170 Sum_probs=62.7
Q ss_pred eEEEEEeCCCCcCh-------HH-HHHhhhhc-CCEEEEEEeCCCCccccccCCCcchHHHHHHHH--HcCCCcEEEEEe
Q psy10355 30 KHFTILDAPGHKSF-------VP-NMIGGTAQ-ADLAVLVISARKGEFETGFDRGGQTREHAMLAK--TAGVKHLVVLIN 98 (156)
Q Consensus 30 ~~~~iiDtpG~~~~-------~~-~~~~~~~~-~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ivv~N 98 (156)
..+.++||||..+- +. ..+.++.. -.+++++.|.+..- +++...|.. .+..++ -.+.| .|+|+|
T Consensus 215 lrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~C---GySva~Qvk-LfhsIKpLFaNK~-~IlvlN 289 (620)
T KOG1490|consen 215 LRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMC---GYSVAAQVK-LYHSIKPLFANKV-TILVLN 289 (620)
T ss_pred eeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhh---CCCHHHHHH-HHHHhHHHhcCCc-eEEEee
Confidence 46999999997542 11 23333333 34788999987532 111111111 111111 13667 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
|+|+.....- .+-.+++...+... .+++++.+|+.+.+|+..+++
T Consensus 290 K~D~m~~edL----~~~~~~ll~~~~~~-----~~v~v~~tS~~~eegVm~Vrt 334 (620)
T KOG1490|consen 290 KIDAMRPEDL----DQKNQELLQTIIDD-----GNVKVVQTSCVQEEGVMDVRT 334 (620)
T ss_pred cccccCcccc----CHHHHHHHHHHHhc-----cCceEEEecccchhceeeHHH
Confidence 9997643322 22223333333333 257999999999999988765
No 319
>PRK13796 GTPase YqeH; Provisional
Probab=98.36 E-value=2.8e-06 Score=65.98 Aligned_cols=89 Identities=18% Similarity=0.094 Sum_probs=55.4
Q ss_pred HHhhhhcCC-EEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHH
Q psy10355 47 MIGGTAQAD-LAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKK 125 (156)
Q Consensus 47 ~~~~~~~~d-~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 125 (156)
+...+...+ .+++|+|+.+.. ..+...+.... .+.| +++|+||+|+...... .+.+++.+....+.
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~--------~s~~~~L~~~~-~~kp-viLViNK~DLl~~~~~---~~~i~~~l~~~~k~ 128 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFN--------GSWIPGLHRFV-GNNP-VLLVGNKADLLPKSVK---KNKVKNWLRQEAKE 128 (365)
T ss_pred HHHhhcccCcEEEEEEECccCC--------CchhHHHHHHh-CCCC-EEEEEEchhhCCCccC---HHHHHHHHHHHHHh
Confidence 556666666 889999997643 23333333322 2567 8999999998642211 22333344444555
Q ss_pred cCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 126 LGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 126 ~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.|+. ...++.+||++|.|+++|.
T Consensus 129 ~g~~---~~~v~~vSAk~g~gI~eL~ 151 (365)
T PRK13796 129 LGLR---PVDVVLISAQKGHGIDELL 151 (365)
T ss_pred cCCC---cCcEEEEECCCCCCHHHHH
Confidence 5542 1268999999999998764
No 320
>KOG4423|consensus
Probab=98.30 E-value=2.7e-07 Score=64.18 Aligned_cols=107 Identities=21% Similarity=0.207 Sum_probs=74.3
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH--HcC--CCcEEEEEeCCCCCCc
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK--TAG--VKHLVVLINKMDDPTV 105 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~ivv~NK~Dl~~~ 105 (156)
..+.+||.+|+++|..++.-+++.+.++.+|+|.++.. .|+....|.+.+.--. ..| +| +++..||+|.-.
T Consensus 75 vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~---tfe~~skwkqdldsk~qLpng~Pv~-~vllankCd~e~- 149 (229)
T KOG4423|consen 75 VRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSL---TFEPVSKWKQDLDSKLQLPNGTPVP-CVLLANKCDQEK- 149 (229)
T ss_pred HHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccc---cccHHHHHHHhccCcccCCCCCcch-heeccchhccCh-
Confidence 35889999999999999999999999999999998743 2333333433321111 123 45 688999999631
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 106 MWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
....+.-..+..+.+.+||. .++.+|++...|+++.
T Consensus 150 ----~a~~~~~~~~d~f~kengf~-----gwtets~Kenkni~Ea 185 (229)
T KOG4423|consen 150 ----SAKNEATRQFDNFKKENGFE-----GWTETSAKENKNIPEA 185 (229)
T ss_pred ----HhhhhhHHHHHHHHhccCcc-----ceeeeccccccChhHH
Confidence 12222234466777888874 4599999999998764
No 321
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.29 E-value=2e-06 Score=59.22 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=47.0
Q ss_pred CCeEEEEEeCCCCcCh----HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSF----VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~----~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
....+.|+||||.... ...+..+++.+|++|+|+++.... .......+........+.+++|+||+
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~-------~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDL-------TESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTG-------GGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCccc-------chHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 4467999999998542 356888889999999999998865 23344444545544445589999985
No 322
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.25 E-value=1.9e-06 Score=56.42 Aligned_cols=94 Identities=19% Similarity=0.234 Sum_probs=61.0
Q ss_pred EEeCCCC----cChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhH
Q psy10355 34 ILDAPGH----KSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSE 109 (156)
Q Consensus 34 iiDtpG~----~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~ 109 (156)
.+||||- +++..........+|++++|-.++++. ..|. +. .+.-...| .|-+++|.|++. .
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~--s~f~--p~------f~~~~~k~-vIgvVTK~DLae----d 105 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPE--SRFP--PG------FLDIGVKK-VIGVVTKADLAE----D 105 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCcc--ccCC--cc------cccccccc-eEEEEecccccc----h
Confidence 6899994 344444566667899999999887763 1111 11 11112345 788999999873 2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 110 ARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.++.. .+.++.+.|. -++|.+|+....|+++|.
T Consensus 106 ~dI~~----~~~~L~eaGa-----~~IF~~s~~d~~gv~~l~ 138 (148)
T COG4917 106 ADISL----VKRWLREAGA-----EPIFETSAVDNQGVEELV 138 (148)
T ss_pred HhHHH----HHHHHHHcCC-----cceEEEeccCcccHHHHH
Confidence 33343 3344455553 488999999999998764
No 323
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.18 E-value=1.6e-05 Score=62.21 Aligned_cols=83 Identities=13% Similarity=0.146 Sum_probs=53.5
Q ss_pred ceeeeee---EEEEeC-----CeEEEEEeCCCCcC-------------------------hHHH----HHhhhh-cCCEE
Q psy10355 16 KTVEVGR---AYFETD-----RKHFTILDAPGHKS-------------------------FVPN----MIGGTA-QADLA 57 (156)
Q Consensus 16 ~t~~~~~---~~~~~~-----~~~~~iiDtpG~~~-------------------------~~~~----~~~~~~-~~d~~ 57 (156)
+|.++++ ..++.. ...+.++||+|+.. |... +...+. .+|.+
T Consensus 69 tTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIg 148 (492)
T TIGR02836 69 MTTEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIG 148 (492)
T ss_pred ccCCCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEE
Confidence 8888888 334331 26799999999732 1111 444455 78999
Q ss_pred EEEE-eCCCCcc-ccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 58 VLVI-SARKGEF-ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 58 ilvv-D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
|+|. |++-+.. +..+ .......+..++..++| +++++||.|
T Consensus 149 ivVtTDgsi~dI~Re~y--~~aEe~~i~eLk~~~kP-fiivlN~~d 191 (492)
T TIGR02836 149 VVVTTDGTITDIPREDY--VEAEERVIEELKELNKP-FIILLNSTH 191 (492)
T ss_pred EEEEcCCCccccccccc--hHHHHHHHHHHHhcCCC-EEEEEECcC
Confidence 9998 8752110 0000 13345566778888999 899999999
No 324
>KOG0082|consensus
Probab=98.16 E-value=1.1e-05 Score=61.78 Aligned_cols=89 Identities=16% Similarity=0.185 Sum_probs=65.2
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCC--CcchHHHHHHHH---H
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR--GGQTREHAMLAK---T 87 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~--~~~~~~~~~~~~---~ 87 (156)
-|--|.++....|.+.+..+-++|.+|++.-++.|...+.+++++|||++.++.. +..++. ..+..+.+.+.. .
T Consensus 178 ~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYd-q~l~ED~~~NRM~eS~~LF~sI~n 256 (354)
T KOG0082|consen 178 SRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYD-QVLEEDETTNRMHESLKLFESICN 256 (354)
T ss_pred hccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhh-hhcccccchhHHHHHHHHHHHHhc
Confidence 3456888899999999999999999999999999999999999999999987543 111211 112222222222 1
Q ss_pred ----cCCCcEEEEEeCCCCC
Q psy10355 88 ----AGVKHLVVLINKMDDP 103 (156)
Q Consensus 88 ----~~~~~~ivv~NK~Dl~ 103 (156)
.+.+ +|+.+||.|+.
T Consensus 257 ~~~F~~ts-iiLFLNK~DLF 275 (354)
T KOG0082|consen 257 NKWFANTS-IILFLNKKDLF 275 (354)
T ss_pred CcccccCc-EEEEeecHHHH
Confidence 2456 99999999974
No 325
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.10 E-value=0.00074 Score=49.88 Aligned_cols=85 Identities=14% Similarity=0.086 Sum_probs=51.8
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChH------HH----HHhhhh--cCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFV------PN----MIGGTA--QADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~------~~----~~~~~~--~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
+.|.........+++..+.+|||||..+.. .. ...++. ..+++++|...+.... ...+...+
T Consensus 64 ~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~------~~~d~~ll 137 (249)
T cd01853 64 SETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRR------DYLDLPLL 137 (249)
T ss_pred CceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCC------CHHHHHHH
Confidence 556777777778889999999999987652 11 222232 5678888865543211 12233444
Q ss_pred HHHHH-cCC---CcEEEEEeCCCCCCc
Q psy10355 83 MLAKT-AGV---KHLVVLINKMDDPTV 105 (156)
Q Consensus 83 ~~~~~-~~~---~~~ivv~NK~Dl~~~ 105 (156)
..+.. .|. .++++|+||+|....
T Consensus 138 k~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 138 RAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 43332 231 248999999997543
No 326
>KOG3886|consensus
Probab=98.09 E-value=6.4e-06 Score=59.45 Aligned_cols=124 Identities=17% Similarity=0.201 Sum_probs=78.1
Q ss_pred HHhhcCceeeeeeEEEEe-CCeEEEEEeCCCCcChHHHHHh-----hhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 10 QKREKGKTVEVGRAYFET-DRKHFTILDAPGHKSFVPNMIG-----GTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~-----~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
+-+..|-|++.......+ ++..+++||+.|++.+.+...+ .+++.+++++|+|+....+++.+. ..+..+.
T Consensus 32 D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~---~yqk~Le 108 (295)
T KOG3886|consen 32 DTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFH---YYQKCLE 108 (295)
T ss_pred hhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHH---HHHHHHH
Confidence 345678888888888766 4478999999999977665444 567899999999997654321111 1222233
Q ss_pred HHHHc--CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeeccc
Q psy10355 84 LAKTA--GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGEL 143 (156)
Q Consensus 84 ~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 143 (156)
.+... ... +.+.+.|+|+..-+.....+++-++.+..+-.. ..+.++|+|-+.
T Consensus 109 ~ll~~SP~Ak-iF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~------~~~~~f~TsiwD 163 (295)
T KOG3886|consen 109 ALLQNSPEAK-IFCLLHKMDLVQEDARELIFQRRKEDLRRLSRP------LECKCFPTSIWD 163 (295)
T ss_pred HHHhcCCcce-EEEEEeechhcccchHHHHHHHHHHHHHHhccc------ccccccccchhh
Confidence 33322 234 788999999876555554444444444332221 135678887764
No 327
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.06 E-value=9.9e-06 Score=58.05 Aligned_cols=98 Identities=11% Similarity=0.064 Sum_probs=55.2
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
+..+.+++|.|.-... ..+....+..+.|+|+..+. .... ......+.+ .++++||+|+....
T Consensus 102 ~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d--------~~~~---~~~~~~~~a-~iiv~NK~Dl~~~~-- 164 (207)
T TIGR00073 102 DIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGD--------DKPL---KYPGMFKEA-DLIVINKADLAEAV-- 164 (207)
T ss_pred CCCEEEEecCCCcCCC---cccccccCeEEEEEecCccc--------chhh---hhHhHHhhC-CEEEEEHHHccccc--
Confidence 4578899999831111 11112345667788886543 1111 111223456 58999999986321
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.....+..+.+. ..+ ...+++++||++|+|++.+.
T Consensus 165 ~~~~~~~~~~l~----~~~----~~~~i~~~Sa~~g~gv~~l~ 199 (207)
T TIGR00073 165 GFDVEKMKADAK----KIN----PEAEIILMSLKTGEGLDEWL 199 (207)
T ss_pred hhhHHHHHHHHH----HhC----CCCCEEEEECCCCCCHHHHH
Confidence 111233333332 222 24689999999999998764
No 328
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.03 E-value=2.9e-05 Score=58.30 Aligned_cols=86 Identities=19% Similarity=0.216 Sum_probs=56.3
Q ss_pred hhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCC
Q psy10355 49 GGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128 (156)
Q Consensus 49 ~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (156)
.-..+.|-+++|+.+..+.+. .......+..+...|+.+ ++++||+|+... ..... ++....+..+
T Consensus 75 p~v~n~d~~iiIvs~~~P~~~-----~~~ldR~Lv~ae~~gi~p-vIvlnK~DL~~~----~~~~~--~~~~~~y~~~-- 140 (301)
T COG1162 75 PPVANNDQAIIVVSLVDPDFN-----TNLLDRYLVLAEAGGIEP-VIVLNKIDLLDD----EEAAV--KELLREYEDI-- 140 (301)
T ss_pred CcccccceEEEEEeccCCCCC-----HHHHHHHHHHHHHcCCcE-EEEEEccccCcc----hHHHH--HHHHHHHHhC--
Confidence 334557778888888766531 123345666667788885 889999998742 11221 3344445555
Q ss_pred CCCCCCeEEEeecccCCCCccCCC
Q psy10355 129 NAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 129 ~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+++++.+|++++.|+++|..
T Consensus 141 ----gy~v~~~s~~~~~~~~~l~~ 160 (301)
T COG1162 141 ----GYPVLFVSAKNGDGLEELAE 160 (301)
T ss_pred ----CeeEEEecCcCcccHHHHHH
Confidence 46899999999999987653
No 329
>KOG1954|consensus
Probab=97.99 E-value=9.7e-05 Score=56.94 Aligned_cols=67 Identities=24% Similarity=0.268 Sum_probs=51.3
Q ss_pred eEEEEEeCCCC-----------cChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEe
Q psy10355 30 KHFTILDAPGH-----------KSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLIN 98 (156)
Q Consensus 30 ~~~~iiDtpG~-----------~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~N 98 (156)
.+++++||||. .+|......++..+|.+++++|+..-.. ..+..+.+..++...-. +-+|+|
T Consensus 147 e~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDI------sdEf~~vi~aLkG~Edk-iRVVLN 219 (532)
T KOG1954|consen 147 ESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDI------SDEFKRVIDALKGHEDK-IRVVLN 219 (532)
T ss_pred hheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccc------cHHHHHHHHHhhCCcce-eEEEec
Confidence 46999999996 3567778888899999999999965332 35566677766654444 778999
Q ss_pred CCCCC
Q psy10355 99 KMDDP 103 (156)
Q Consensus 99 K~Dl~ 103 (156)
|.|..
T Consensus 220 KADqV 224 (532)
T KOG1954|consen 220 KADQV 224 (532)
T ss_pred ccccc
Confidence 99976
No 330
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.99 E-value=2.6e-05 Score=55.69 Aligned_cols=96 Identities=16% Similarity=0.226 Sum_probs=55.9
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcE--EEEEeCCCCCCcc
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHL--VVLINKMDDPTVM 106 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--ivv~NK~Dl~~~~ 106 (156)
+....++.|.|.. ...... ...+|.+|.|+|+..+. ...... ..++. + ++++||+|+...
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~--------~~~~~~-----~~qi~-~ad~~~~~k~d~~~~- 152 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGD--------KIPRKG-----GPGIT-RSDLLVINKIDLAPM- 152 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhh--------hhhhhh-----HhHhh-hccEEEEEhhhcccc-
Confidence 4568899999931 110111 12258899999997754 100110 11222 3 789999998632
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.......+.+.++.+ + ...+++++||++|+|++++.
T Consensus 153 -~~~~~~~~~~~~~~~----~----~~~~i~~~Sa~~g~gi~el~ 188 (199)
T TIGR00101 153 -VGADLGVMERDAKKM----R----GEKPFIFTNLKTKEGLDTVI 188 (199)
T ss_pred -ccccHHHHHHHHHHh----C----CCCCEEEEECCCCCCHHHHH
Confidence 112233333444332 2 24689999999999998764
No 331
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.92 E-value=3.9e-05 Score=60.11 Aligned_cols=87 Identities=17% Similarity=0.265 Sum_probs=60.2
Q ss_pred cCceeeeeeEEEEe-CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCC--CcchHHHH---HHHHH
Q psy10355 14 KGKTVEVGRAYFET-DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR--GGQTREHA---MLAKT 87 (156)
Q Consensus 14 ~g~t~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~--~~~~~~~~---~~~~~ 87 (156)
+.-|.++....+.+ ++..+.++|..|++.-++.|...+.+++++|||++.++.. +..++. .....+.+ ..+..
T Consensus 219 r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~yd-q~~~ed~~~nrl~esl~lF~~i~~ 297 (389)
T PF00503_consen 219 RVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYD-QTLYEDPNTNRLHESLNLFESICN 297 (389)
T ss_dssp ----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGG-SBESSSTTSBHHHHHHHHHHHHHT
T ss_pred cCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchh-hhhcccchHHHHHHHHHHHHHHHh
Confidence 45678888889999 9999999999999999999999999999999999986432 111111 12232323 22222
Q ss_pred ----cCCCcEEEEEeCCCC
Q psy10355 88 ----AGVKHLVVLINKMDD 102 (156)
Q Consensus 88 ----~~~~~~ivv~NK~Dl 102 (156)
.+.| +|+++||+|+
T Consensus 298 ~~~~~~~~-iil~lnK~D~ 315 (389)
T PF00503_consen 298 NPWFKNTP-IILFLNKIDL 315 (389)
T ss_dssp SGGGTTSE-EEEEEE-HHH
T ss_pred CcccccCc-eEEeeecHHH
Confidence 2456 9999999995
No 332
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.85 E-value=0.00021 Score=49.82 Aligned_cols=66 Identities=24% Similarity=0.277 Sum_probs=48.2
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
+.+.+.++|||+... ......+..+|.+++++.++... .......+..+...+.+ +.+++||+|..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~-------~~~~~~~~~~l~~~~~~-~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSG-------LHDLERAVELVRHFGIP-VGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCccc-------HHHHHHHHHHHHHcCCC-EEEEEeCCCCC
Confidence 578899999997643 34556778999999999886543 13344555666667778 68999999953
No 333
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.75 E-value=0.00064 Score=50.85 Aligned_cols=96 Identities=19% Similarity=0.217 Sum_probs=55.5
Q ss_pred CCeEEEEEeCCCCcChHHHHH-------hhhh-----cCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEE
Q psy10355 28 DRKHFTILDAPGHKSFVPNMI-------GGTA-----QADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLV 94 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~-------~~~~-----~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i 94 (156)
.++.+.++||||......... .... .+|..++|+|++.+. +......... ..++. -
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~---------~~~~~~~~f~~~~~~~--g 221 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ---------NALEQAKVFNEAVGLT--G 221 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH---------HHHHHHHHHHhhCCCC--E
Confidence 568899999999764322211 1111 378999999997643 2233222222 33433 6
Q ss_pred EEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 95 VLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 95 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+++||+|....... +..+.... +.|+..++ +|++++.|..
T Consensus 222 ~IlTKlDe~~~~G~----------~l~~~~~~------~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 222 IILTKLDGTAKGGI----------ILSIAYEL------KLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred EEEEccCCCCCccH----------HHHHHHHH------CcCEEEEe--CCCChHhCcc
Confidence 68999997532111 11111222 35777777 8888877753
No 334
>KOG3883|consensus
Probab=97.71 E-value=0.00015 Score=49.19 Aligned_cols=70 Identities=27% Similarity=0.202 Sum_probs=44.8
Q ss_pred eEEEEEeCCCCcCh-HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCCCC
Q psy10355 30 KHFTILDAPGHKSF-VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMDDP 103 (156)
Q Consensus 30 ~~~~iiDtpG~~~~-~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~Dl~ 103 (156)
.++.|.||+|.... ...-..++.-+|+.++|+++.+.. +|+........+...+ ...+| ++++.||+|+.
T Consensus 60 E~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~e---Sf~rv~llKk~Idk~KdKKEvp-iVVLaN~rdr~ 131 (198)
T KOG3883|consen 60 EQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPE---SFQRVELLKKEIDKHKDKKEVP-IVVLANKRDRA 131 (198)
T ss_pred heEEEeecccccCchhhhhHhHhccCceEEEEecCCCHH---HHHHHHHHHHHHhhcccccccc-EEEEechhhcc
Confidence 46999999999888 444455667789999999997743 2221111111111111 13467 89999999985
No 335
>KOG1707|consensus
Probab=97.71 E-value=5.4e-05 Score=61.06 Aligned_cols=116 Identities=16% Similarity=0.079 Sum_probs=68.2
Q ss_pred eEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCC-CcchHHHHHHHHH--cCCCcEEEEEe
Q psy10355 22 RAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR-GGQTREHAMLAKT--AGVKHLVVLIN 98 (156)
Q Consensus 22 ~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~ivv~N 98 (156)
+..+.-+....+++||+.-.+-.......++.||++.++++.+++. .++. ...|..+++.... .++| +|+|.|
T Consensus 48 PadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~---T~D~ist~WLPlir~~~~~~~~~P-VILvGN 123 (625)
T KOG1707|consen 48 PADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDES---TVDRISTKWLPLIRQLFGDYHETP-VILVGN 123 (625)
T ss_pred CCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChH---HhhhhhhhhhhhhhcccCCCccCC-EEEEee
Confidence 3333445566899999977766666788899999999999887632 1111 2344444444331 3578 999999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
|+|........ .+ ..+..++.+.. +--..|.+||++-.++.++
T Consensus 124 K~d~~~~~~~s--~e---~~~~pim~~f~----EiEtciecSA~~~~n~~e~ 166 (625)
T KOG1707|consen 124 KSDNGDNENNS--DE---VNTLPIMIAFA----EIETCIECSALTLANVSEL 166 (625)
T ss_pred ccCCccccccc--hh---HHHHHHHHHhH----HHHHHHhhhhhhhhhhHhh
Confidence 99975432220 01 11222222110 0114577888887776654
No 336
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.66 E-value=0.00022 Score=49.79 Aligned_cols=41 Identities=27% Similarity=0.316 Sum_probs=28.4
Q ss_pred CEEEEEEeCCCCccccccCCCcchHHHHHH--HHHcCCCcEEEEEeCCCCC
Q psy10355 55 DLAVLVISARKGEFETGFDRGGQTREHAML--AKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 55 d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ivv~NK~Dl~ 103 (156)
|++++|+|+..+. .......... +...+.| .|+++||+|+.
T Consensus 1 DvVl~VvDar~p~-------~~~~~~i~~~~~l~~~~kp-~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPL-------GCRCPQVEEAVLQAGGNKK-LVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCC-------CCCCHHHHHHHHhccCCCC-EEEEEehhhcC
Confidence 7899999997764 2333334333 3334667 79999999986
No 337
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.63 E-value=0.00017 Score=54.15 Aligned_cols=101 Identities=16% Similarity=0.123 Sum_probs=56.2
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
-++.++|+-|-|--.-- .....-+|.+++|.=+.-|. ..+.+. ..-..+-. |+|+||.|+.++
T Consensus 142 aG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD----------~~Q~iK-~GimEiaD-i~vINKaD~~~A-- 204 (323)
T COG1703 142 AGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGD----------DLQGIK-AGIMEIAD-IIVINKADRKGA-- 204 (323)
T ss_pred cCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCc----------HHHHHH-hhhhhhhh-eeeEeccChhhH--
Confidence 35778888888853211 22234578888887664443 222111 11112332 779999996543
Q ss_pred hHHHHHHHHHHHHHH---HHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 108 SEARYNECKDKILPY---LKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.....++...+... ....+ +..|++.+||.+|+|+++|
T Consensus 205 -~~a~r~l~~al~~~~~~~~~~~----W~ppv~~t~A~~g~Gi~~L 245 (323)
T COG1703 205 -EKAARELRSALDLLREVWRENG----WRPPVVTTSALEGEGIDEL 245 (323)
T ss_pred -HHHHHHHHHHHHhhcccccccC----CCCceeEeeeccCCCHHHH
Confidence 11233333333221 11222 3568999999999999876
No 338
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.62 E-value=0.0012 Score=50.40 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=55.3
Q ss_pred CCeEEEEEeCCCCcChH----HHHHhhh--------hcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-HHcCCCcEE
Q psy10355 28 DRKHFTILDAPGHKSFV----PNMIGGT--------AQADLAVLVISARKGEFETGFDRGGQTREHAMLA-KTAGVKHLV 94 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~----~~~~~~~--------~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i 94 (156)
.++.+.++||||..... ....... ...+..++|+|++.+. ......... ...++. -
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~---------~~~~~a~~f~~~~~~~--g 263 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ---------NALSQAKAFHEAVGLT--G 263 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh---------HHHHHHHHHHhhCCCC--E
Confidence 56789999999975421 1222211 2357789999998753 222222222 223333 6
Q ss_pred EEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 95 VLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 95 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+++||+|...... . +....... +.|+..++ +|++++.|..
T Consensus 264 iIlTKlD~t~~~G-~---------~l~~~~~~------~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 264 IILTKLDGTAKGG-V---------VFAIADEL------GIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred EEEECCCCCCCcc-H---------HHHHHHHH------CCCEEEEe--CCCChhhCcc
Confidence 7999999643211 1 11122222 46888887 8999988754
No 339
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.59 E-value=0.00024 Score=52.40 Aligned_cols=101 Identities=18% Similarity=0.123 Sum_probs=56.9
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHH-HHHHHHHcCCCcEEEEEeCCCCCCcc
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTRE-HAMLAKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
-++.++|+-|.|.-.- -.....-+|.+++|+-+..|. .-|... -+.. +.. |+|+||.|+.+
T Consensus 120 aG~D~IiiETVGvGQs---E~~I~~~aD~~v~v~~Pg~GD-------~iQ~~KaGimE-----iaD-i~vVNKaD~~g-- 181 (266)
T PF03308_consen 120 AGFDVIIIETVGVGQS---EVDIADMADTVVLVLVPGLGD-------EIQAIKAGIME-----IAD-IFVVNKADRPG-- 181 (266)
T ss_dssp TT-SEEEEEEESSSTH---HHHHHTTSSEEEEEEESSTCC-------CCCTB-TTHHH-----H-S-EEEEE--SHHH--
T ss_pred cCCCEEEEeCCCCCcc---HHHHHHhcCeEEEEecCCCcc-------HHHHHhhhhhh-----hcc-EEEEeCCChHH--
Confidence 4578899999885321 223356789999999886654 112211 0111 232 77999999542
Q ss_pred hhHHHHHHHHHHHHHHHHHcCC-CCCCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGF-NAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+....++...+....- ...+..|++.+||.+|+|+++|.
T Consensus 182 -----A~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~ 222 (266)
T PF03308_consen 182 -----ADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELW 222 (266)
T ss_dssp -----HHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHH
T ss_pred -----HHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHH
Confidence 33444445555543321 11124589999999999998764
No 340
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.57 E-value=0.0014 Score=47.12 Aligned_cols=84 Identities=24% Similarity=0.269 Sum_probs=49.5
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcCh-------HHHHH----hhhhcCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSF-------VPNMI----GGTAQADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~-------~~~~~----~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
....|.........+++..+.++||||+.+- ..... ....+.+++++|+...+ . .......
T Consensus 32 ~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r-~-------t~~~~~~ 103 (212)
T PF04548_consen 32 AKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGR-F-------TEEDREV 103 (212)
T ss_dssp TSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB---------SHHHHHH
T ss_pred cCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCc-c-------hHHHHHH
Confidence 3456777777777899999999999997542 12222 23456899999999863 2 2334444
Q ss_pred HHHHHH-cC---CCcEEEEEeCCCCCC
Q psy10355 82 AMLAKT-AG---VKHLVVLINKMDDPT 104 (156)
Q Consensus 82 ~~~~~~-~~---~~~~ivv~NK~Dl~~ 104 (156)
+..+.. .| ..+.+++.+..|...
T Consensus 104 l~~l~~~FG~~~~k~~ivvfT~~d~~~ 130 (212)
T PF04548_consen 104 LELLQEIFGEEIWKHTIVVFTHADELE 130 (212)
T ss_dssp HHHHHHHHCGGGGGGEEEEEEEGGGGT
T ss_pred HHHHHHHccHHHHhHhhHHhhhccccc
Confidence 433332 23 345888999888544
No 341
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.52 E-value=0.00048 Score=38.92 Aligned_cols=51 Identities=24% Similarity=0.274 Sum_probs=24.2
Q ss_pred HHHhhhh-cCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-Hc-CCCcEEEEEeCCC
Q psy10355 46 NMIGGTA-QADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TA-GVKHLVVLINKMD 101 (156)
Q Consensus 46 ~~~~~~~-~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~ivv~NK~D 101 (156)
....+++ -.++++|++|++..- ++....|.. .+..++ .. +.| +++|+||+|
T Consensus 5 qai~AL~hL~~~ilfi~D~Se~C---Gysie~Q~~-L~~~ik~~F~~~P-~i~V~nK~D 58 (58)
T PF06858_consen 5 QAITALAHLADAILFIIDPSEQC---GYSIEEQLS-LFKEIKPLFPNKP-VIVVLNKID 58 (58)
T ss_dssp HHHHGGGGT-SEEEEEE-TT-TT---SS-HHHHHH-HHHHHHHHTTTS--EEEEE--TT
T ss_pred HHHHHHHhhcceEEEEEcCCCCC---CCCHHHHHH-HHHHHHHHcCCCC-EEEEEeccC
Confidence 3445554 467999999998643 111111111 222222 23 677 899999998
No 342
>PRK14974 cell division protein FtsY; Provisional
Probab=97.50 E-value=0.0016 Score=50.15 Aligned_cols=96 Identities=15% Similarity=0.114 Sum_probs=56.3
Q ss_pred CCeEEEEEeCCCCcChH----HHHHhhh--hcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFV----PNMIGGT--AQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~----~~~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~ 100 (156)
.++.+.++||||..... ....... .+.|.+++|+|+..+. ...+...... ..++. -+++||+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---------d~~~~a~~f~~~~~~~--giIlTKl 289 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---------DAVEQAREFNEAVGID--GVILTKV 289 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---------hHHHHHHHHHhcCCCC--EEEEeee
Confidence 35679999999976432 2222221 2568899999997652 3333333333 34555 6689999
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 101 DDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 101 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
|........ + ...... +.|+..++ +|++++.|..
T Consensus 290 D~~~~~G~~---------l-s~~~~~------~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 290 DADAKGGAA---------L-SIAYVI------GKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred cCCCCccHH---------H-HHHHHH------CcCEEEEe--CCCChhhccc
Confidence 975321111 1 111112 45888877 7999987754
No 343
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.46 E-value=0.00075 Score=52.52 Aligned_cols=109 Identities=17% Similarity=0.140 Sum_probs=56.5
Q ss_pred EEEeCC-eEEEEEeCCCCcChHHHHHh-----hhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEE
Q psy10355 24 YFETDR-KHFTILDAPGHKSFVPNMIG-----GTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLI 97 (156)
Q Consensus 24 ~~~~~~-~~~~iiDtpG~~~~~~~~~~-----~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~ 97 (156)
.|.... -++.+||.||...-.-.... .+...|.+|++.+. .- ...+......+...|.+ +.+|-
T Consensus 79 ~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~-rf--------~~ndv~La~~i~~~gK~-fyfVR 148 (376)
T PF05049_consen 79 PYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSE-RF--------TENDVQLAKEIQRMGKK-FYFVR 148 (376)
T ss_dssp EEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESS-S----------HHHHHHHHHHHHTT-E-EEEEE
T ss_pred eCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCC-CC--------chhhHHHHHHHHHcCCc-EEEEE
Confidence 344444 35999999997432222222 34567987776643 21 24566677778888989 89999
Q ss_pred eCCCCCCc--------ch-hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCC
Q psy10355 98 NKMDDPTV--------MW-SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEK 145 (156)
Q Consensus 98 NK~Dl~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~ 145 (156)
+|+|.... .+ ....++++++.+..-++..|.. ..++|.+|+..-.
T Consensus 149 TKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~---~P~VFLVS~~dl~ 202 (376)
T PF05049_consen 149 TKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVS---EPQVFLVSSFDLS 202 (376)
T ss_dssp --HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-S---S--EEEB-TTTTT
T ss_pred ecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCC---cCceEEEeCCCcc
Confidence 99995110 11 1223455555555556655542 4589999987643
No 344
>KOG0099|consensus
Probab=97.46 E-value=0.00074 Score=49.98 Aligned_cols=90 Identities=17% Similarity=0.210 Sum_probs=65.4
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCC-CcchHHHHHHHHH----
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR-GGQTREHAMLAKT---- 87 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~-~~~~~~~~~~~~~---- 87 (156)
-|-+|.++....|..+..+|+..|..|+++-...|+..+...-++|||+.+++...-..-+. +.+..+.+.+.+.
T Consensus 185 cRvlTsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnN 264 (379)
T KOG0099|consen 185 CRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNN 264 (379)
T ss_pred hhhhccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhh
Confidence 46778888889999999999999999999999999999999999999998875321000010 1222333333222
Q ss_pred ---cCCCcEEEEEeCCCCC
Q psy10355 88 ---AGVKHLVVLINKMDDP 103 (156)
Q Consensus 88 ---~~~~~~ivv~NK~Dl~ 103 (156)
..+. +|+.+||-|+.
T Consensus 265 RwL~tis-vIlFLNKqDll 282 (379)
T KOG0099|consen 265 RWLRTIS-VILFLNKQDLL 282 (379)
T ss_pred hHHhhhh-eeEEecHHHHH
Confidence 2355 89999999974
No 345
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.36 E-value=0.012 Score=44.73 Aligned_cols=80 Identities=10% Similarity=0.005 Sum_probs=45.7
Q ss_pred eeeeeEEEEeCCeEEEEEeCCCCcChH---HHHHhhhh------cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-
Q psy10355 18 VEVGRAYFETDRKHFTILDAPGHKSFV---PNMIGGTA------QADLAVLVISARKGEFETGFDRGGQTREHAMLAKT- 87 (156)
Q Consensus 18 ~~~~~~~~~~~~~~~~iiDtpG~~~~~---~~~~~~~~------~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~- 87 (156)
..........++..+.+|||||..+.. ......++ ..|++++|...+.... ...+...+..+..
T Consensus 74 ~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~------~~~DkqlLk~Iqe~ 147 (313)
T TIGR00991 74 LRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRV------DTLDGQVIRAITDS 147 (313)
T ss_pred eeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccC------CHHHHHHHHHHHHH
Confidence 333344455688999999999987642 12222222 5899999955432111 1222333332222
Q ss_pred cC---CCcEEEEEeCCCCC
Q psy10355 88 AG---VKHLVVLINKMDDP 103 (156)
Q Consensus 88 ~~---~~~~ivv~NK~Dl~ 103 (156)
.| ..+.|+++|+.|..
T Consensus 148 FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 148 FGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred hhhhhhccEEEEEECCccC
Confidence 12 13489999999965
No 346
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.28 E-value=0.00056 Score=49.71 Aligned_cols=65 Identities=26% Similarity=0.469 Sum_probs=46.8
Q ss_pred CCeEEEEEeC-CCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDA-PGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDt-pG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
+.+.+.++|| +|.+.|.+ ...+++|.+|.|+|++.... .....+-......++.++.+++||+|-
T Consensus 132 ~~~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~sl-------~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 132 NRYEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYKSL-------RTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred ccCcEEEEecccchhhhcc---ccccCCCEEEEEeCCcHHHH-------HHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 3477899998 57666653 34467899999999976541 334445566667786669999999993
No 347
>KOG0410|consensus
Probab=97.28 E-value=0.0004 Score=52.72 Aligned_cols=107 Identities=16% Similarity=0.048 Sum_probs=67.8
Q ss_pred eeeeeeEEEEe-CCeEEEEEeCCCCcCh--------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH
Q psy10355 17 TVEVGRAYFET-DRKHFTILDAPGHKSF--------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT 87 (156)
Q Consensus 17 t~~~~~~~~~~-~~~~~~iiDtpG~~~~--------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
|.+++...... ++..+.+.||-|+-.- ...+..-...+|.++.|+|.+.+.+ ..+....+.-+..
T Consensus 212 TLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~a------e~q~e~Vl~vL~~ 285 (410)
T KOG0410|consen 212 TLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNA------EEQRETVLHVLNQ 285 (410)
T ss_pred eccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccH------HHHHHHHHHHHHh
Confidence 34444333333 4577999999998532 2234445577999999999988764 2444455566666
Q ss_pred cCCC------cEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 88 AGVK------HLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 88 ~~~~------~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.++| .+|=|-||+|..... ...+....+++||++|.|++++.
T Consensus 286 igv~~~pkl~~mieVdnkiD~e~~~----------------------~e~E~n~~v~isaltgdgl~el~ 333 (410)
T KOG0410|consen 286 IGVPSEPKLQNMIEVDNKIDYEEDE----------------------VEEEKNLDVGISALTGDGLEELL 333 (410)
T ss_pred cCCCcHHHHhHHHhhcccccccccc----------------------CccccCCccccccccCccHHHHH
Confidence 6664 245588888853211 00012236899999999998764
No 348
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.24 E-value=0.00059 Score=48.20 Aligned_cols=91 Identities=18% Similarity=0.127 Sum_probs=51.9
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCC-EEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCc----EEEEEeCCCCCC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQAD-LAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKH----LVVLINKMDDPT 104 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d-~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ivv~NK~Dl~~ 104 (156)
..+.|+-..|. +. -. ....-.| .-|+|+|.++|.- . + ..+-|. =++|+||.|++.
T Consensus 97 ~Dll~iEs~GN--L~-~~-~sp~L~d~~~v~VidvteGe~--~----P----------~K~gP~i~~aDllVInK~DLa~ 156 (202)
T COG0378 97 LDLLFIESVGN--LV-CP-FSPDLGDHLRVVVIDVTEGED--I----P----------RKGGPGIFKADLLVINKTDLAP 156 (202)
T ss_pred CCEEEEecCcc--ee-cc-cCcchhhceEEEEEECCCCCC--C----c----------ccCCCceeEeeEEEEehHHhHH
Confidence 46777777772 11 11 1222334 8899999988751 0 0 011121 167999999863
Q ss_pred cchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 105 VMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
. ...+++.+.+.. ++.+ .+.|||.+|+++|+|++.+
T Consensus 157 ~--v~~dlevm~~da----~~~n----p~~~ii~~n~ktg~G~~~~ 192 (202)
T COG0378 157 Y--VGADLEVMARDA----KEVN----PEAPIIFTNLKTGEGLDEW 192 (202)
T ss_pred H--hCccHHHHHHHH----HHhC----CCCCEEEEeCCCCcCHHHH
Confidence 2 111223333333 2222 2579999999999998864
No 349
>KOG0447|consensus
Probab=97.18 E-value=0.0012 Score=53.60 Aligned_cols=86 Identities=14% Similarity=0.200 Sum_probs=57.0
Q ss_pred hcCceeeeeeEEEEeCC---eEEEEEeCCCCc-------------ChHHHHHhhhhcCCEEEEEE-eCCCCccccccCCC
Q psy10355 13 EKGKTVEVGRAYFETDR---KHFTILDAPGHK-------------SFVPNMIGGTAQADLAVLVI-SARKGEFETGFDRG 75 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~---~~~~iiDtpG~~-------------~~~~~~~~~~~~~d~~ilvv-D~~~~~~~~~~~~~ 75 (156)
..|-|+..-...++..| -.+.++|.||.- ........++.+.+++|+|+ |++... + .
T Consensus 392 r~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA-E-----R 465 (980)
T KOG0447|consen 392 KEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA-E-----R 465 (980)
T ss_pred cCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch-h-----h
Confidence 45777777777676654 469999999962 34566778889999999887 333222 1 1
Q ss_pred cchHHHHHHHHHcCCCcEEEEEeCCCCCCc
Q psy10355 76 GQTREHAMLAKTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~ 105 (156)
...-..+..+...|.. -|+|++|+|++..
T Consensus 466 SnVTDLVsq~DP~GrR-TIfVLTKVDlAEk 494 (980)
T KOG0447|consen 466 SIVTDLVSQMDPHGRR-TIFVLTKVDLAEK 494 (980)
T ss_pred hhHHHHHHhcCCCCCe-eEEEEeecchhhh
Confidence 1122334444455666 6999999998754
No 350
>KOG1486|consensus
Probab=97.16 E-value=0.0024 Score=47.10 Aligned_cols=52 Identities=23% Similarity=0.242 Sum_probs=42.6
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcCh-------HHHHHhhhhcCCEEEEEEeCCCC
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSF-------VPNMIGGTAQADLAVLVISARKG 66 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~-------~~~~~~~~~~~d~~ilvvD~~~~ 66 (156)
-+|....++.+.+++..+.++|.||.-.- .++..+..+.||.++.|+|++..
T Consensus 94 FTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 94 FTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred eeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 45677888889999999999999997432 34567778899999999999764
No 351
>KOG0448|consensus
Probab=97.13 E-value=0.0029 Score=52.32 Aligned_cols=99 Identities=16% Similarity=0.173 Sum_probs=59.7
Q ss_pred EEEEEeCCCCcC---hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 31 HFTILDAPGHKS---FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 31 ~~~iiDtpG~~~---~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
.+.++|.||..- +....-+....+|++|+|+.+.... -+.+..+-.....+.|.++++.||.|....
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntl--------t~sek~Ff~~vs~~KpniFIlnnkwDasas-- 276 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTL--------TLSEKQFFHKVSEEKPNIFILNNKWDASAS-- 276 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHh--------HHHHHHHHHHhhccCCcEEEEechhhhhcc--
Confidence 699999999743 3445556667899999999986654 233444444444557878889999996432
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCC--CCCeEEEeeccc
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAA--KDLSFMPCSGEL 143 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~Sa~~ 143 (156)
.++..+.+.+++. +++-.-. -.-.++.+||+.
T Consensus 277 e~ec~e~V~~Qi~----eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 277 EPECKEDVLKQIH----ELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred cHHHHHHHHHHHH----hcCcccHhhhcCeeEEEeccc
Confidence 2333333333332 2221100 123578899664
No 352
>KOG1547|consensus
Probab=97.05 E-value=0.018 Score=42.30 Aligned_cols=100 Identities=18% Similarity=0.173 Sum_probs=55.7
Q ss_pred eeeeeeEEEEeCCe--EEEEEeCCCCcCh-------------H-HHHHhhhh--------------cCCEEEEEEeCCCC
Q psy10355 17 TVEVGRAYFETDRK--HFTILDAPGHKSF-------------V-PNMIGGTA--------------QADLAVLVISARKG 66 (156)
Q Consensus 17 t~~~~~~~~~~~~~--~~~iiDtpG~~~~-------------~-~~~~~~~~--------------~~d~~ilvvD~~~~ 66 (156)
.+....-.++.++. +++++||||+-+. + .+...|++ ...|+++.+.++-.
T Consensus 89 eik~~thvieE~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh 168 (336)
T KOG1547|consen 89 EIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH 168 (336)
T ss_pred EEEeeeeeeeecceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC
Confidence 33344444455554 5899999998542 1 12222321 24689999988754
Q ss_pred ccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCC
Q psy10355 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128 (156)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (156)
.. .+-+.+.+..+.+. +. +|-|+-|.|...-.. ..+.++.+..-+..+++
T Consensus 169 sL------rplDieflkrLt~v-vN-vvPVIakaDtlTleE----r~~FkqrI~~el~~~~i 218 (336)
T KOG1547|consen 169 SL------RPLDIEFLKRLTEV-VN-VVPVIAKADTLTLEE----RSAFKQRIRKELEKHGI 218 (336)
T ss_pred cc------CcccHHHHHHHhhh-he-eeeeEeecccccHHH----HHHHHHHHHHHHHhcCc
Confidence 32 35556666555432 34 677999999654322 23344445544454443
No 353
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.05 E-value=0.00061 Score=51.25 Aligned_cols=49 Identities=12% Similarity=0.113 Sum_probs=31.4
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
-++++||+|+... ....++.+.+.+ +.++ ...+++++||++|+|++.|.
T Consensus 233 DIVVLNKiDLl~~--~~~dle~~~~~l----r~ln----p~a~I~~vSA~tGeGld~L~ 281 (290)
T PRK10463 233 SLMLLNKVDLLPY--LNFDVEKCIACA----REVN----PEIEIILISATSGEGMDQWL 281 (290)
T ss_pred cEEEEEhHHcCcc--cHHHHHHHHHHH----HhhC----CCCcEEEEECCCCCCHHHHH
Confidence 3889999998631 112233333333 3222 24689999999999998763
No 354
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.03 E-value=0.0092 Score=39.96 Aligned_cols=64 Identities=14% Similarity=0.160 Sum_probs=42.6
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcEEEEEeCCCC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHLVVLINKMDD 102 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~NK~Dl 102 (156)
+.+.++|||+.. .......+..+|.++++++++.... ......+..+.. .+..++.+++|+++.
T Consensus 45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~~s~-------~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEPTSI-------TDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCChhHH-------HHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 789999999864 3344678899999999998865321 222334434332 233347899999983
No 355
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=96.98 E-value=0.019 Score=43.19 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=57.9
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcCh-------------HHH-HHhhh-------------hcCCEEEEEEeC
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSF-------------VPN-MIGGT-------------AQADLAVLVISA 63 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~-------------~~~-~~~~~-------------~~~d~~ilvvD~ 63 (156)
.+...+......+..++ ..++++||||+.+. +.. ...++ ...+++++++++
T Consensus 44 ~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~p 123 (281)
T PF00735_consen 44 SRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPP 123 (281)
T ss_dssp -SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-T
T ss_pred ccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcC
Confidence 34455555555555554 46999999997532 110 01111 124799999998
Q ss_pred CC-CccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCC
Q psy10355 64 RK-GEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128 (156)
Q Consensus 64 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (156)
+. ++ .+.+.+.+..+. ..++ +|-|+.|.|... ...+..+++.+..-++..+.
T Consensus 124 t~~~L-------~~~Di~~mk~Ls-~~vN-vIPvIaKaD~lt----~~el~~~k~~i~~~l~~~~I 176 (281)
T PF00735_consen 124 TGHGL-------KPLDIEFMKRLS-KRVN-VIPVIAKADTLT----PEELQAFKQRIREDLEENNI 176 (281)
T ss_dssp TSSSS--------HHHHHHHHHHT-TTSE-EEEEESTGGGS-----HHHHHHHHHHHHHHHHHTT-
T ss_pred CCccc-------hHHHHHHHHHhc-cccc-EEeEEecccccC----HHHHHHHHHHHHHHHHHcCc
Confidence 64 33 233444444433 2356 899999999763 44566777777777766653
No 356
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=96.98 E-value=0.028 Score=43.53 Aligned_cols=103 Identities=19% Similarity=0.263 Sum_probs=60.2
Q ss_pred hcCceeeeeeEEEEeCCe--EEEEEeCCCCcCh-------------HHH-HHhhh-------h-------cCCEEEEEEe
Q psy10355 13 EKGKTVEVGRAYFETDRK--HFTILDAPGHKSF-------------VPN-MIGGT-------A-------QADLAVLVIS 62 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~--~~~iiDtpG~~~~-------------~~~-~~~~~-------~-------~~d~~ilvvD 62 (156)
++++.+......+..++. .++++||||+-++ +.. -..++ + ..+++++.+-
T Consensus 63 ~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~ 142 (373)
T COG5019 63 SPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIR 142 (373)
T ss_pred CcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEec
Confidence 344445555445555553 5999999998553 111 11111 1 2468999998
Q ss_pred CCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcC
Q psy10355 63 ARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127 (156)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (156)
++..-. .+.+.+.+..+. ..+. +|-|+.|.|..+ ...++..++.+...++..+
T Consensus 143 Ptgh~l------~~~DIe~Mk~ls-~~vN-lIPVI~KaD~lT----~~El~~~K~~I~~~i~~~n 195 (373)
T COG5019 143 PTGHGL------KPLDIEAMKRLS-KRVN-LIPVIAKADTLT----DDELAEFKERIREDLEQYN 195 (373)
T ss_pred CCCCCC------CHHHHHHHHHHh-cccC-eeeeeeccccCC----HHHHHHHHHHHHHHHHHhC
Confidence 764321 234444443333 2456 888999999764 3346666777777666654
No 357
>KOG1424|consensus
Probab=96.94 E-value=0.0075 Score=48.46 Aligned_cols=78 Identities=18% Similarity=0.193 Sum_probs=45.3
Q ss_pred HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHH
Q psy10355 46 NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKK 125 (156)
Q Consensus 46 ~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 125 (156)
+....+..+|++|.+||+....+.. .+....++.... .. .+.++++||.||... ..+ ..-..++..
T Consensus 167 QLWRVlErSDivvqIVDARnPllfr----~~dLe~Yvke~d-~~-K~~~LLvNKaDLl~~---~qr-----~aWa~YF~~ 232 (562)
T KOG1424|consen 167 QLWRVLERSDIVVQIVDARNPLLFR----SPDLEDYVKEVD-PS-KANVLLVNKADLLPP---EQR-----VAWAEYFRQ 232 (562)
T ss_pred HHHHHHhhcceEEEEeecCCccccC----ChhHHHHHhccc-cc-cceEEEEehhhcCCH---HHH-----HHHHHHHHh
Confidence 3445566789999999998876311 122222322221 11 337999999998742 111 112223333
Q ss_pred cCCCCCCCCeEEEeeccc
Q psy10355 126 LGFNAAKDLSFMPCSGEL 143 (156)
Q Consensus 126 ~~~~~~~~~~~i~~Sa~~ 143 (156)
++++++..||.-
T Consensus 233 ------~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 233 ------NNIPVVFFSALA 244 (562)
T ss_pred ------cCceEEEEeccc
Confidence 357999999986
No 358
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.94 E-value=0.0049 Score=47.26 Aligned_cols=96 Identities=17% Similarity=0.080 Sum_probs=58.7
Q ss_pred EEEeCCCCc-ChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHH
Q psy10355 33 TILDAPGHK-SFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEAR 111 (156)
Q Consensus 33 ~iiDtpG~~-~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~ 111 (156)
.+-+-|||. ++.......+..+|+++-|+|+.+... .....+.+.. .+.+ .++++||.|+...
T Consensus 13 ~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~-------s~~~~l~~~v--~~k~-~i~vlNK~DL~~~------ 76 (322)
T COG1161 13 KIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLG-------TRNPELERIV--KEKP-KLLVLNKADLAPK------ 76 (322)
T ss_pred cccCCCCchHHHHHHHHHhcccCCEEEEEEecccccc-------ccCccHHHHH--ccCC-cEEEEehhhcCCH------
Confidence 445568884 456677888889999999999987651 2222222222 2345 4889999998742
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 112 YNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+++....+.++. +...+.+|+..+.+...+.
T Consensus 77 -~~~~~W~~~~~~~~------~~~~~~v~~~~~~~~~~i~ 109 (322)
T COG1161 77 -EVTKKWKKYFKKEE------GIKPIFVSAKSRQGGKKIR 109 (322)
T ss_pred -HHHHHHHHHHHhcC------CCccEEEEeecccCccchH
Confidence 11223232222221 3456788888887766543
No 359
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.93 E-value=0.0045 Score=49.14 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=40.7
Q ss_pred CCeEEEEEeCCCCcChHH----HHHhh--hhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVP----NMIGG--TAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~----~~~~~--~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.++.+.|+||||...... ..... ....+-++||+|++.|. ............-.+ --+++||+|
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq---------~a~~~a~~F~~~~~~-~g~IlTKlD 250 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ---------AAEAQAKAFKDSVDV-GSVIITKLD 250 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccCh---------hHHHHHHHHHhccCC-cEEEEECcc
Confidence 367899999999754322 22222 23467899999998763 233344444332123 367899999
Q ss_pred CC
Q psy10355 102 DP 103 (156)
Q Consensus 102 l~ 103 (156)
..
T Consensus 251 ~~ 252 (429)
T TIGR01425 251 GH 252 (429)
T ss_pred CC
Confidence 64
No 360
>KOG2484|consensus
Probab=96.92 E-value=0.011 Score=46.21 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=35.2
Q ss_pred hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCCCCC
Q psy10355 43 FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMDDPT 104 (156)
Q Consensus 43 ~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~Dl~~ 104 (156)
|.+.....+..+|++|-|+||.++.- ....+.-.... ..|-.++|+|+||+|+..
T Consensus 136 Y~ke~rkvve~sDVVleVlDARDPlg-------tR~~~vE~~V~~~~gnKkLILVLNK~DLVP 191 (435)
T KOG2484|consen 136 YDKEFRKVVEASDVVLEVLDARDPLG-------TRCPEVEEAVLQAHGNKKLILVLNKIDLVP 191 (435)
T ss_pred HHHHHHHHHhhhheEEEeeeccCCCC-------CCChhHHHHHHhccCCceEEEEeehhccCC
Confidence 44455555677899999999988761 22222222221 234244999999999974
No 361
>PTZ00258 GTP-binding protein; Provisional
Probab=96.88 E-value=0.0032 Score=49.40 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=40.7
Q ss_pred hcCceeeeeeEEEEeCC-----------------eEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCC
Q psy10355 13 EKGKTVEVGRAYFETDR-----------------KHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISAR 64 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~-----------------~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~ 64 (156)
.+++|+++..+.+.+.+ .++.++||||... +.......++.+|++++|+|+.
T Consensus 51 ~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 51 FPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 47889998888887653 3599999999743 3345666788999999999984
No 362
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.80 E-value=0.016 Score=39.88 Aligned_cols=63 Identities=22% Similarity=0.321 Sum_probs=44.0
Q ss_pred EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 31 HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 31 ~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
.+.++||||.... .....+..+|.+|+++++.... .......+..+...+.+.+.+++|+++.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s-------~~~~~~~~~~~~~~~~~~~~iv~N~~~~ 126 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISS-------LRDADRVKGLLEALGIKVVGVIVNRVRP 126 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcch-------HHHHHHHHHHHHHcCCceEEEEEeCCcc
Confidence 7999999986443 3556678999999999886543 1233344455555555546789999985
No 363
>KOG3887|consensus
Probab=96.79 E-value=0.023 Score=41.87 Aligned_cols=105 Identities=18% Similarity=0.234 Sum_probs=58.9
Q ss_pred eEEEEEeCCCCcChHHH---HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCcEEEEEeCCCC
Q psy10355 30 KHFTILDAPGHKSFVPN---MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKHLVVLINKMDD 102 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~---~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivv~NK~Dl 102 (156)
..|.+||.||+-++... .....+++-+.|+|+|+.+... ..-..-+....+. .++. +=+.+-|+|-
T Consensus 75 inf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~------eala~L~~~v~raykvNp~in-~EVfiHKvDG 147 (347)
T KOG3887|consen 75 INFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYM------EALARLHMTVERAYKVNPNIN-FEVFIHKVDG 147 (347)
T ss_pred cceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHH------HHHHHHHHHhhheeecCCCce-EEEEEEeccC
Confidence 56899999999776432 4566788999999999966431 0111111112222 2345 6778999995
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecc
Q psy10355 103 PTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGE 142 (156)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 142 (156)
...+...+....+.+...+-+...|.... .+.+..+|-.
T Consensus 148 Lsdd~kietqrdI~qr~~d~l~d~gle~v-~vsf~LTSIy 186 (347)
T KOG3887|consen 148 LSDDFKIETQRDIHQRTNDELADAGLEKV-QVSFYLTSIY 186 (347)
T ss_pred CchhhhhhhHHHHHHHhhHHHHhhhhccc-eEEEEEeeec
Confidence 43333333333344444444555555321 3345556543
No 364
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=96.76 E-value=0.0047 Score=46.28 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=39.9
Q ss_pred hcCceeeeeeEEEEeCCe-----------------EEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCC
Q psy10355 13 EKGKTVEVGRAYFETDRK-----------------HFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISAR 64 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~-----------------~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~ 64 (156)
.+++|+++..+.+.+.+. ++.++|+||..+ +.......++.+|++++|||+.
T Consensus 28 ~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 28 YPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred ccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 478888888888777653 599999999753 2334556678999999999984
No 365
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.71 E-value=0.013 Score=40.49 Aligned_cols=66 Identities=20% Similarity=0.371 Sum_probs=39.3
Q ss_pred CCeEEEEEeCCCCcCh----HHHHHhhh--hcCCEEEEEEeCCCCccccccCCCcchHHHH-HHHHHcCCCcEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSF----VPNMIGGT--AQADLAVLVISARKGEFETGFDRGGQTREHA-MLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~----~~~~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ivv~NK~ 100 (156)
.++.+.++||||...+ ........ ...+.+++|+|+.... ...+.. ......++. -+++||+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---------~~~~~~~~~~~~~~~~--~viltk~ 149 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---------DAVNQAKAFNEALGIT--GVILTKL 149 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---------HHHHHHHHHHhhCCCC--EEEEECC
Confidence 4567999999998533 22222222 2479999999986532 222222 222334543 5678999
Q ss_pred CCCC
Q psy10355 101 DDPT 104 (156)
Q Consensus 101 Dl~~ 104 (156)
|...
T Consensus 150 D~~~ 153 (173)
T cd03115 150 DGDA 153 (173)
T ss_pred cCCC
Confidence 9753
No 366
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.68 E-value=0.0071 Score=41.09 Aligned_cols=59 Identities=19% Similarity=0.265 Sum_probs=37.7
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.++.+.|+||||.. ......+..+|-+++|..+... +....+.. .....-. ++++||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~----------D~y~~~k~-~~~~~~~-~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAG----------DDIQAIKA-GIMEIAD-IVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCch----------hHHHHhhh-hHhhhcC-EEEEeCCC
Confidence 46789999999964 3334588899999999877532 12222211 1122233 77999998
No 367
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.65 E-value=0.0079 Score=41.50 Aligned_cols=66 Identities=17% Similarity=0.126 Sum_probs=46.2
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhh--hcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGT--AQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
.++.+.++|||+... ......+ ..+|.+++|+.+.... .......+..+...+.+..-+++|+.+-
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s-------~~~~~~~~~~l~~~~~~~~gvv~N~~~~ 133 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVA-------LDDVRKAIDMFKKVNIPILGVVENMSYF 133 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhh-------HHHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence 568899999999743 2223333 5789999999876533 2445566677777788755689999984
No 368
>KOG3905|consensus
Probab=96.60 E-value=0.0051 Score=46.99 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=45.1
Q ss_pred cCCCcEEEEEeCCCCC-----CcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 88 AGVKHLVVLINKMDDP-----TVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 88 ~~~~~~ivv~NK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.|+| +++|++|+|.. ...+..+.++.++..++.+|-.+| ...|.+|++...|++-|
T Consensus 221 lGi~-vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~G------aaLiyTSvKE~KNidll 281 (473)
T KOG3905|consen 221 LGIP-VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYG------AALIYTSVKETKNIDLL 281 (473)
T ss_pred CCCc-EEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcC------ceeEEeecccccchHHH
Confidence 4677 89999999973 233555678999999999998775 57899999999998765
No 369
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=96.58 E-value=0.013 Score=41.71 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=45.9
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
..+.+.|+|||..... .......+.+|.+|+|+++.... .......+..+...+.+.+-+|+||.|..
T Consensus 126 ~~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~~~~-------~~~~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 126 KYFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAGEIK-------KRDVQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred hcCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECCCCC-------HHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 3477999999974322 12233456789999999986543 23445555666667777567799999954
No 370
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=96.55 E-value=0.0094 Score=46.39 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=40.3
Q ss_pred hhcCceeeeeeEEEEeCC-----------------eEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCC
Q psy10355 12 REKGKTVEVGRAYFETDR-----------------KHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISAR 64 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~-----------------~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~ 64 (156)
..+++|+++..+.+...+ .++.++|+||..+ +.......++.+|++++|||+.
T Consensus 31 nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 31 NYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 347889888887777655 2599999999743 2334566678999999999985
No 371
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.50 E-value=0.012 Score=37.62 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=40.1
Q ss_pred EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCC---cEEEEEeC
Q psy10355 31 HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVK---HLVVLINK 99 (156)
Q Consensus 31 ~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ivv~NK 99 (156)
.+.++|||+.... .....+..+|.++++++++... .......+..+...+.+ ++.+++|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~s-------~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLPS-------IRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChHH-------HHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 7999999997543 3456778899999999886543 13334444444444432 47788885
No 372
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.49 E-value=0.053 Score=43.36 Aligned_cols=65 Identities=25% Similarity=0.367 Sum_probs=39.6
Q ss_pred CeEEEEEeCCCCcChHHH------HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPN------MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~------~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
+..+.|+||||....... ....+..+|.+++|+|++.+. +.......... .++.--+++||+|.
T Consensus 175 ~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---------~av~~a~~F~~-~l~i~gvIlTKlD~ 244 (437)
T PRK00771 175 KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---------QAKNQAKAFHE-AVGIGGIIITKLDG 244 (437)
T ss_pred cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---------HHHHHHHHHHh-cCCCCEEEEecccC
Confidence 357999999997654322 223344678999999997642 23333333222 22312568999995
Q ss_pred C
Q psy10355 103 P 103 (156)
Q Consensus 103 ~ 103 (156)
.
T Consensus 245 ~ 245 (437)
T PRK00771 245 T 245 (437)
T ss_pred C
Confidence 4
No 373
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.43 E-value=0.016 Score=41.24 Aligned_cols=67 Identities=16% Similarity=0.273 Sum_probs=40.3
Q ss_pred CCeEEEEEeCCCCcChHH----HHHhhh--hcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVP----NMIGGT--AQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~----~~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
++..+.++||||...... .+...+ ...+-+++|+|++.+. .............++. =++++|+|
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--------~~~~~~~~~~~~~~~~--~lIlTKlD 151 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--------EDLEQALAFYEAFGID--GLILTKLD 151 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--------HHHHHHHHHHHHSSTC--EEEEESTT
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--------HHHHHHHHHhhcccCc--eEEEEeec
Confidence 456899999999765422 222222 2467899999997753 2233333333445666 34699999
Q ss_pred CCC
Q psy10355 102 DPT 104 (156)
Q Consensus 102 l~~ 104 (156)
...
T Consensus 152 et~ 154 (196)
T PF00448_consen 152 ETA 154 (196)
T ss_dssp SSS
T ss_pred CCC
Confidence 653
No 374
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.081 Score=43.55 Aligned_cols=110 Identities=18% Similarity=0.271 Sum_probs=75.1
Q ss_pred eeeeeeEEEEe---CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcE
Q psy10355 17 TVEVGRAYFET---DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHL 93 (156)
Q Consensus 17 t~~~~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (156)
|++-..++++. ..+.++|+.+|. -...++...+-+|.+++++|++-|. .-.+.+.+..+...|.|++
T Consensus 97 ti~~i~GPiTvvsgK~RRiTflEcp~---Dl~~miDvaKIaDLVlLlIdgnfGf-------EMETmEFLnil~~HGmPrv 166 (1077)
T COG5192 97 TIDEIRGPITVVSGKTRRITFLECPS---DLHQMIDVAKIADLVLLLIDGNFGF-------EMETMEFLNILISHGMPRV 166 (1077)
T ss_pred hhhccCCceEEeecceeEEEEEeChH---HHHHHHhHHHhhheeEEEeccccCc-------eehHHHHHHHHhhcCCCce
Confidence 34444444443 447799999992 3445667778899999999998876 3567788888888999998
Q ss_pred EEEEeCCCCCCcchhHHHHHHHHHHHH-HHHHHcCCCCCCCCeEEEeeccc
Q psy10355 94 VVLINKMDDPTVMWSEARYNECKDKIL-PYLKKLGFNAAKDLSFMPCSGEL 143 (156)
Q Consensus 94 ivv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~Sa~~ 143 (156)
+-|++-.|+.. .+..+..+++.++ .+..++ + .+..+|.+|..-
T Consensus 167 lgV~ThlDlfk---~~stLr~~KKrlkhRfWtEi-y---qGaKlFylsgV~ 210 (1077)
T COG5192 167 LGVVTHLDLFK---NPSTLRSIKKRLKHRFWTEI-Y---QGAKLFYLSGVE 210 (1077)
T ss_pred EEEEeeccccc---ChHHHHHHHHHHhhhHHHHH-c---CCceEEEecccc
Confidence 88999999864 2334556665554 233222 1 245677777653
No 375
>KOG2655|consensus
Probab=96.32 E-value=0.13 Score=40.06 Aligned_cols=104 Identities=17% Similarity=0.203 Sum_probs=61.7
Q ss_pred HhhcCceeeeeeEEEEeCCe--EEEEEeCCCCcCh-------------HHH-HHhh-----------hh--cCCEEEEEE
Q psy10355 11 KREKGKTVEVGRAYFETDRK--HFTILDAPGHKSF-------------VPN-MIGG-----------TA--QADLAVLVI 61 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~--~~~iiDtpG~~~~-------------~~~-~~~~-----------~~--~~d~~ilvv 61 (156)
+..+.+.+......++-++. +++++||||+-++ +.. -..+ +. ..+|+++.+
T Consensus 58 ~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI 137 (366)
T KOG2655|consen 58 RIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFI 137 (366)
T ss_pred CccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEe
Confidence 33445556666566665654 5899999998543 111 1111 11 357999999
Q ss_pred eCCCC-ccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcC
Q psy10355 62 SARKG-EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127 (156)
Q Consensus 62 D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (156)
.++.. + .+.+.+....+. ..++ +|-|+-|.|..+ ...+..+++.+...+...+
T Consensus 138 ~P~ghgL-------~p~Di~~Mk~l~-~~vN-iIPVI~KaD~lT----~~El~~~K~~I~~~i~~~n 191 (366)
T KOG2655|consen 138 SPTGHGL-------KPLDIEFMKKLS-KKVN-LIPVIAKADTLT----KDELNQFKKRIRQDIEEHN 191 (366)
T ss_pred CCCCCCC-------cHhhHHHHHHHh-cccc-ccceeeccccCC----HHHHHHHHHHHHHHHHHcC
Confidence 87643 3 244444444333 3566 788999999764 3345666666666665554
No 376
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.30 E-value=0.0097 Score=40.81 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=38.0
Q ss_pred CeEEEEEeCCCCcChHHH--------HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 29 RKHFTILDAPGHKSFVPN--------MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~--------~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
..+..++||||..+-... .....-..|.+++++|+..... .. .+......++... . ++++||+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~--~~---~~~~~~~~Qi~~a--d--~ivlnk~ 156 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQ--HL---DQQTEAQSQIAFA--D--RILLNKT 156 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHH--Hh---hccHHHHHHHHHC--C--EEEEecc
Confidence 457899999998653222 2223445789999999865431 00 1112222333322 3 6699999
Q ss_pred CC
Q psy10355 101 DD 102 (156)
Q Consensus 101 Dl 102 (156)
|+
T Consensus 157 dl 158 (158)
T cd03112 157 DL 158 (158)
T ss_pred cC
Confidence 95
No 377
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.29 E-value=0.064 Score=42.79 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=38.5
Q ss_pred CCeEEEEEeCCCCcChHH----HHHh--hhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFVP----NMIG--GTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~----~~~~--~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~ 100 (156)
.++.+.|+||||...... .... ..-..+.+++|+|+..+ ........... ..++. =+++||+
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---------q~~~~~a~~f~~~v~i~--giIlTKl 249 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---------QDAVNTAKTFNERLGLT--GVVLTKL 249 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---------HHHHHHHHHHHhhCCCC--EEEEeCc
Confidence 456799999999643321 1111 12346888999999754 22333333333 23444 4579999
Q ss_pred CCC
Q psy10355 101 DDP 103 (156)
Q Consensus 101 Dl~ 103 (156)
|-.
T Consensus 250 D~~ 252 (428)
T TIGR00959 250 DGD 252 (428)
T ss_pred cCc
Confidence 953
No 378
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=96.12 E-value=0.027 Score=41.06 Aligned_cols=66 Identities=23% Similarity=0.378 Sum_probs=44.3
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
.++.+.++|||+... ..+...+..+|.++++++++.... .............+.+.+.+++|+.+.
T Consensus 107 ~~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~-------~~~~~~~~~~~~~~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 107 DDTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSI-------TDALKTKIVAEKLGTAILGVVLNRVTR 172 (251)
T ss_pred hhCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchH-------HHHHHHHHHHHhcCCceEEEEEECCCc
Confidence 357899999998654 345566778999999998854321 222333344444566645689999984
No 379
>PRK10867 signal recognition particle protein; Provisional
Probab=96.11 E-value=0.092 Score=41.97 Aligned_cols=65 Identities=20% Similarity=0.320 Sum_probs=37.6
Q ss_pred CCeEEEEEeCCCCcCh----HHHHHhhh--hcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSF----VPNMIGGT--AQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~----~~~~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~ 100 (156)
.++.+.|+||||.... ........ -..+.+++|+|+..+. .......... ..++. -+++||+
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---------~av~~a~~F~~~~~i~--giIlTKl 250 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---------DAVNTAKAFNEALGLT--GVILTKL 250 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---------HHHHHHHHHHhhCCCC--EEEEeCc
Confidence 4577999999996532 22211111 2467789999986542 2333333333 23333 4578999
Q ss_pred CCC
Q psy10355 101 DDP 103 (156)
Q Consensus 101 Dl~ 103 (156)
|-.
T Consensus 251 D~~ 253 (433)
T PRK10867 251 DGD 253 (433)
T ss_pred cCc
Confidence 953
No 380
>KOG1487|consensus
Probab=96.09 E-value=0.0061 Score=45.20 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=40.7
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcCh-------HHHHHhhhhcCCEEEEEEeCCCCc
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSF-------VPNMIGGTAQADLAVLVISARKGE 67 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~-------~~~~~~~~~~~d~~ilvvD~~~~~ 67 (156)
++|.-...+...+++-++.+.|.||.-+- .++.+...+.|+.+++|+|...+.
T Consensus 91 fttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp~ 150 (358)
T KOG1487|consen 91 FTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPL 150 (358)
T ss_pred ceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCcc
Confidence 45555666667788999999999997432 446777788999999999986543
No 381
>PHA02518 ParA-like protein; Provisional
Probab=95.87 E-value=0.096 Score=37.10 Aligned_cols=69 Identities=9% Similarity=0.116 Sum_probs=41.9
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH--cCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT--AGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~NK~Dl 102 (156)
..+.+.|+||||.. ......++..+|.+|+++.++.... ....+....+..... .+.+.+.++.|+.+.
T Consensus 75 ~~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~----~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 75 SGYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDI----WAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred ccCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhH----HHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 45789999999974 3456778889999999998865321 001122222222221 245545667787763
No 382
>PRK09602 translation-associated GTPase; Reviewed
Probab=95.83 E-value=0.028 Score=44.37 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=27.3
Q ss_pred eEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCC
Q psy10355 30 KHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISAR 64 (156)
Q Consensus 30 ~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~ 64 (156)
..+.++||||... ........++.+|++++|+|+.
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5689999999632 2334556689999999999996
No 383
>KOG1534|consensus
Probab=95.61 E-value=0.017 Score=41.70 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=42.3
Q ss_pred eEEEEEeCCCCcCh------HHHHHhhhhcCC---EEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 30 KHFTILDAPGHKSF------VPNMIGGTAQAD---LAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 30 ~~~~iiDtpG~~~~------~~~~~~~~~~~d---~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
..+.++|+||+-.+ .+.....+.+-+ |+++++|+.=-. .+....+.....+..+....+|| |=+++||
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~v--D~~KfiSG~lsAlsAMi~lE~P~-INvlsKM 174 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLV--DSTKFISGCLSALSAMISLEVPH-INVLSKM 174 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhh--hHHHHHHHHHHHHHHHHHhcCcc-hhhhhHH
Confidence 46899999998543 233333443322 678888873211 00000122334455566678996 8899999
Q ss_pred CCCC
Q psy10355 101 DDPT 104 (156)
Q Consensus 101 Dl~~ 104 (156)
|+..
T Consensus 175 DLlk 178 (273)
T KOG1534|consen 175 DLLK 178 (273)
T ss_pred HHhh
Confidence 9864
No 384
>CHL00175 minD septum-site determining protein; Validated
Probab=95.55 E-value=0.043 Score=40.99 Aligned_cols=65 Identities=18% Similarity=0.290 Sum_probs=43.8
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
.+.+.++|||+... .....++..+|.+++|++++... .......+..+...+.+.+-+++|+++.
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~~~s-------i~~~~~~~~~l~~~~~~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPEITA-------IRDADRVAGLLEANGIYNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCChHH-------HHHHHHHHHHHHHcCCCceEEEEeccCh
Confidence 57899999998643 34556667789999998875432 1233344455555555546789999983
No 385
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=95.54 E-value=0.24 Score=41.76 Aligned_cols=84 Identities=14% Similarity=0.066 Sum_probs=48.0
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcCh------HHH----HHhhhh--cCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSF------VPN----MIGGTA--QADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~------~~~----~~~~~~--~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
.++|. ........++..+.+|||||..+. ... ...++. .+|++|+|........ .......
T Consensus 151 ~~TTr-~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~------D~eD~~a 223 (763)
T TIGR00993 151 MGTTS-VQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTR------DSNDLPL 223 (763)
T ss_pred CCceE-EEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccc------cHHHHHH
Confidence 44443 444455668899999999998753 111 222333 4788888876542210 1122223
Q ss_pred HHHHHH-cC---CCcEEEEEeCCCCCC
Q psy10355 82 AMLAKT-AG---VKHLVVLINKMDDPT 104 (156)
Q Consensus 82 ~~~~~~-~~---~~~~ivv~NK~Dl~~ 104 (156)
+..+.. .| ..++||+.|..|...
T Consensus 224 Lr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 224 LRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 332221 22 355899999999764
No 386
>KOG2423|consensus
Probab=95.46 E-value=0.045 Score=43.04 Aligned_cols=49 Identities=27% Similarity=0.322 Sum_probs=31.7
Q ss_pred hhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC-CCcEEEEEeCCCCCC
Q psy10355 49 GGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG-VKHLVVLINKMDDPT 104 (156)
Q Consensus 49 ~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ivv~NK~Dl~~ 104 (156)
..+..+|++|-|+|+.++. ..+..-+..+++... -.|+|.|+||+||..
T Consensus 209 KViDSSDVvvqVlDARDPm-------GTrc~~ve~ylkke~phKHli~vLNKvDLVP 258 (572)
T KOG2423|consen 209 KVIDSSDVVVQVLDARDPM-------GTRCKHVEEYLKKEKPHKHLIYVLNKVDLVP 258 (572)
T ss_pred HhhcccceeEEeeeccCCc-------ccccHHHHHHHhhcCCcceeEEEeecccccc
Confidence 3345679999999998865 122222333444322 346999999999864
No 387
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.45 E-value=0.057 Score=40.42 Aligned_cols=66 Identities=21% Similarity=0.299 Sum_probs=41.9
Q ss_pred CeEEEEEeCCCCcCh----HHHHHhhhh--cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSF----VPNMIGGTA--QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~----~~~~~~~~~--~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
+..+.++||||.... ...+...+. ..+-++||+|++... .+..+.+......++. =++++|.|.
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--------~d~~~~~~~f~~~~~~--~~I~TKlDe 223 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--------KDMIEIITNFKDIHID--GIVFTKFDE 223 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--------HHHHHHHHHhCCCCCC--EEEEEeecC
Confidence 578999999997643 222333332 346789999987542 3344555555555555 458999997
Q ss_pred CC
Q psy10355 103 PT 104 (156)
Q Consensus 103 ~~ 104 (156)
+.
T Consensus 224 t~ 225 (270)
T PRK06731 224 TA 225 (270)
T ss_pred CC
Confidence 53
No 388
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=95.42 E-value=0.054 Score=39.70 Aligned_cols=65 Identities=17% Similarity=0.299 Sum_probs=43.2
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
.+.+.++|||+.... .+..++..+|.+++++.+.... .......+..+...+...+.+++|+++.
T Consensus 111 ~~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~~~s-------~~~~~~~~~~l~~~~~~~~~iviN~~~~ 175 (261)
T TIGR01968 111 EFDYVIIDCPAGIES--GFRNAVAPADEAIVVTTPEVSA-------VRDADRVIGLLEAKGIEKIHLIVNRLRP 175 (261)
T ss_pred hCCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCCcHH-------HHHHHHHHHHHHHcCCCceEEEEeCcCc
Confidence 478999999986532 3456678899999999875432 1233344444554454336789999984
No 389
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=95.39 E-value=0.34 Score=34.89 Aligned_cols=67 Identities=12% Similarity=-0.029 Sum_probs=45.4
Q ss_pred eEEEEEeCCCCcChHHH-HHhhhhc--CCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 30 KHFTILDAPGHKSFVPN-MIGGTAQ--ADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~-~~~~~~~--~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
+.+.++|||........ ....+.. +|.+++|+.+.... .......+..+...+.+..-+++|++...
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s-------~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLP-------LYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccH-------HHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 88999999975333222 2333333 47899999886543 24556667777777777567899999853
No 390
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=95.35 E-value=0.084 Score=39.37 Aligned_cols=63 Identities=21% Similarity=0.213 Sum_probs=48.7
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
..+.|+|+|--- .-....++.++|.+|+|.-++.-- .++....+......++| ..+|+||.+.
T Consensus 164 ~~~~IIDsaaG~--gCpVi~sl~~aD~ai~VTEPTp~g-------lhD~kr~~el~~~f~ip-~~iViNr~~~ 226 (284)
T COG1149 164 ADLLIIDSAAGT--GCPVIASLKGADLAILVTEPTPFG-------LHDLKRALELVEHFGIP-TGIVINRYNL 226 (284)
T ss_pred cceeEEecCCCC--CChHHHhhccCCEEEEEecCCccc-------hhHHHHHHHHHHHhCCc-eEEEEecCCC
Confidence 478999988431 235678889999999999887543 25667777888889999 6889999974
No 391
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.29 E-value=0.062 Score=42.10 Aligned_cols=68 Identities=19% Similarity=0.268 Sum_probs=39.1
Q ss_pred CCeEEEEEeCCCCcCh---HHHHHhhhhc---CCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc-CCCc------EE
Q psy10355 28 DRKHFTILDAPGHKSF---VPNMIGGTAQ---ADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA-GVKH------LV 94 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~---~~~~~~~~~~---~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~i 94 (156)
.++.+++|||||...+ .......+.. ..-.++|++++.+. ....+.+...... +.|+ -=
T Consensus 214 ~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~--------~~l~evi~~f~~~~~~p~~~~~~~~~ 285 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG--------DTLNEVVQAYRSAAGQPKAALPDLAG 285 (374)
T ss_pred cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh--------HHHHHHHHHHHHhhcccccccCCCCE
Confidence 5678999999998643 2233333333 34568999998764 2223333333322 2210 14
Q ss_pred EEEeCCCCC
Q psy10355 95 VLINKMDDP 103 (156)
Q Consensus 95 vv~NK~Dl~ 103 (156)
++++|+|.+
T Consensus 286 ~I~TKlDEt 294 (374)
T PRK14722 286 CILTKLDEA 294 (374)
T ss_pred EEEeccccC
Confidence 578999965
No 392
>KOG2485|consensus
Probab=95.22 E-value=0.07 Score=40.55 Aligned_cols=66 Identities=17% Similarity=0.110 Sum_probs=43.1
Q ss_pred eEEEEEeCCCCcC-hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCc
Q psy10355 30 KHFTILDAPGHKS-FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 30 ~~~~iiDtpG~~~-~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~ 105 (156)
++...-+-|||-- -.+....-++..|++|=|=|+.-++. .+....-..+. ..++ |+|+||+||+..
T Consensus 22 ~~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLs-------srn~~~~~~~~--~k~r-iiVlNK~DLad~ 88 (335)
T KOG2485|consen 22 YNMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLS-------SRNELFQDFLP--PKPR-IIVLNKMDLADP 88 (335)
T ss_pred cCCccccCchHHHHHHHHHHhhcccccEEEEeeccccCCc-------cccHHHHHhcC--CCce-EEEEecccccCc
Confidence 4455566788742 34455566678999999999987762 33333323332 4575 889999999753
No 393
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.10 E-value=0.089 Score=43.07 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=39.0
Q ss_pred CCeEEEEEeCCCCcChHHH------HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPN------MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~------~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.++.++||||||....... ...... ....++|++++... ..+.+.+......+ + .-+++||+|
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~--------~Dl~eii~~f~~~~-~-~gvILTKlD 495 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHF--------SDLDEVVRRFAHAK-P-QGVVLTKLD 495 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCCh--------hHHHHHHHHHHhhC-C-eEEEEecCc
Confidence 4578999999997533211 111112 23567888887643 34445555444433 3 467999999
Q ss_pred CC
Q psy10355 102 DP 103 (156)
Q Consensus 102 l~ 103 (156)
..
T Consensus 496 Et 497 (559)
T PRK12727 496 ET 497 (559)
T ss_pred Cc
Confidence 64
No 394
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.05 E-value=0.086 Score=41.93 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=41.2
Q ss_pred CCeEEEEEeCCCCcCh----HHHHHhhhh-----cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEe
Q psy10355 28 DRKHFTILDAPGHKSF----VPNMIGGTA-----QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLIN 98 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~----~~~~~~~~~-----~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~N 98 (156)
.+..+.++||||.... ...+...++ ...-.+||+|++.+. ....+........++. =++++
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--------~~~~~~~~~f~~~~~~--glIlT 367 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--------HHTLTVLKAYESLNYR--RILLT 367 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--------HHHHHHHHHhcCCCCC--EEEEE
Confidence 4678999999997532 222222222 123578999998764 3444555555455655 45899
Q ss_pred CCCCC
Q psy10355 99 KMDDP 103 (156)
Q Consensus 99 K~Dl~ 103 (156)
|+|-+
T Consensus 368 KLDEt 372 (432)
T PRK12724 368 KLDEA 372 (432)
T ss_pred cccCC
Confidence 99964
No 395
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.02 E-value=0.08 Score=41.91 Aligned_cols=66 Identities=21% Similarity=0.299 Sum_probs=41.6
Q ss_pred CeEEEEEeCCCCcCh----HHHHHhhhh--cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSF----VPNMIGGTA--QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~----~~~~~~~~~--~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
+..+.|+||||.... .......+. ..+.++||+|++... ....+.+......++. =++++|+|.
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--------~d~~~i~~~F~~~~id--glI~TKLDE 389 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--------KDMIEIITNFKDIHID--GIVFTKFDE 389 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--------HHHHHHHHHhcCCCCC--EEEEEcccC
Confidence 468999999997442 222333332 356789999986542 3335555555555655 458999996
Q ss_pred CC
Q psy10355 103 PT 104 (156)
Q Consensus 103 ~~ 104 (156)
+.
T Consensus 390 T~ 391 (436)
T PRK11889 390 TA 391 (436)
T ss_pred CC
Confidence 53
No 396
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.76 E-value=0.078 Score=41.71 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=36.4
Q ss_pred CeEEEEEeCCCCcChH----HHHHhhhh--cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSFV----PNMIGGTA--QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~----~~~~~~~~--~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
++.+.|+||||..... ........ ..+.+++|+++.... .+....+......++. -+++||+|.
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~--------~d~~~i~~~f~~l~i~--glI~TKLDE 354 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS--------ADVMTILPKLAEIPID--GFIITKMDE 354 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccH--------HHHHHHHHhcCcCCCC--EEEEEcccC
Confidence 5689999999985432 22222222 346667788764321 2222333333333444 568999996
Q ss_pred C
Q psy10355 103 P 103 (156)
Q Consensus 103 ~ 103 (156)
.
T Consensus 355 T 355 (407)
T PRK12726 355 T 355 (407)
T ss_pred C
Confidence 5
No 397
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=94.74 E-value=0.11 Score=36.26 Aligned_cols=65 Identities=25% Similarity=0.277 Sum_probs=44.8
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC--CCcEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG--VKHLVVLINKMDD 102 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ivv~NK~Dl 102 (156)
.+.+.++|||+..... +...+..+|.+|++++++... .......+..+...+ .+.+-+++||++.
T Consensus 94 ~yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~-------i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~ 160 (195)
T PF01656_consen 94 DYDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSS-------IEGAERLIELLKRLGKKLKIIGVVINRVDP 160 (195)
T ss_dssp TSSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHH-------HHHHHHHHHHHHHHTHTEEEEEEEEEEETS
T ss_pred cccceeecccccccHH--HHHHHHhCceeeeecCCcHHH-------HHHHHHHHHHHHHhccccceEEEEEeeeCC
Confidence 3889999999875544 666778999999999985422 133344445555555 2235789999984
No 398
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=94.57 E-value=0.051 Score=43.85 Aligned_cols=55 Identities=29% Similarity=0.400 Sum_probs=42.8
Q ss_pred CCCcEEEEEeCCCCCC-----cchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 89 GVKHLVVLINKMDDPT-----VMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
|+| ++||++|.|... ..+....++.+++.++.+|-.+| ...|.||++...|++.|
T Consensus 196 Gip-i~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yG------AsL~yts~~~~~n~~~L 255 (472)
T PF05783_consen 196 GIP-IVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYG------ASLIYTSVKEEKNLDLL 255 (472)
T ss_pred Ccc-eEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcC------CeEEEeeccccccHHHH
Confidence 567 999999999532 23556678899999999987775 47788999998887654
No 399
>KOG0780|consensus
Probab=94.54 E-value=0.19 Score=39.57 Aligned_cols=64 Identities=22% Similarity=0.357 Sum_probs=39.2
Q ss_pred eCCeEEEEEeCCCCcChHHHHHhh------hhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeC
Q psy10355 27 TDRKHFTILDAPGHKSFVPNMIGG------TAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINK 99 (156)
Q Consensus 27 ~~~~~~~iiDtpG~~~~~~~~~~~------~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK 99 (156)
.++..++|+||.|-+.-....... .-..|-+|+|+|++-|. ..+....... ..++. -++++|
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ---------aae~Qa~aFk~~vdvg--~vIlTK 249 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ---------AAEAQARAFKETVDVG--AVILTK 249 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccH---------hHHHHHHHHHHhhccc--eEEEEe
Confidence 366889999999965432221111 23468999999998764 2222322222 23444 457999
Q ss_pred CC
Q psy10355 100 MD 101 (156)
Q Consensus 100 ~D 101 (156)
+|
T Consensus 250 lD 251 (483)
T KOG0780|consen 250 LD 251 (483)
T ss_pred cc
Confidence 99
No 400
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=94.32 E-value=0.4 Score=35.00 Aligned_cols=67 Identities=12% Similarity=0.077 Sum_probs=40.9
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH---HcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK---TAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ivv~NK~D 101 (156)
+++.+.|+||||... .....++..+|.+|+.+.++...+ .........+.... ..+++ ..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~----~~~~~~~~~v~~~~~~~~~~l~-~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDI----DEALSTYRYVIELLLSENLAIP-TAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHH----HHHHHHHHHHHHHHHHhCCCCC-eEEEEEecc
Confidence 468899999999764 445677888999988877644221 00011111111111 23566 578999987
No 401
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.87 E-value=0.31 Score=38.80 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=40.2
Q ss_pred CCeEEEEEeCCCCcChHHH------HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFVPN------MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~------~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~ 100 (156)
..+.+.|+||+|-...-.. .+...-+.|=+++|+|+.-|. +......... ..++. =++++|+
T Consensus 181 ~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQ---------dA~~~A~aF~e~l~it--GvIlTKl 249 (451)
T COG0541 181 EGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQ---------DAVNTAKAFNEALGIT--GVILTKL 249 (451)
T ss_pred cCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccch---------HHHHHHHHHhhhcCCc--eEEEEcc
Confidence 4468999999996544222 223334578899999998863 2333333333 23444 4589999
Q ss_pred CC
Q psy10355 101 DD 102 (156)
Q Consensus 101 Dl 102 (156)
|=
T Consensus 250 DG 251 (451)
T COG0541 250 DG 251 (451)
T ss_pred cC
Confidence 93
No 402
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.82 E-value=0.28 Score=38.71 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=40.5
Q ss_pred CCeEEEEEeCCCCcChH----HHHHhhhhc--CC-EEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFV----PNMIGGTAQ--AD-LAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~----~~~~~~~~~--~d-~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
.++.+.++||||..... ......+.. .+ -.+||+|++.+. ....+.+......+.. =++++|.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--------~~~~~~~~~~~~~~~~--~~I~TKl 322 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--------SDVKEIFHQFSPFSYK--TVIFTKL 322 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--------HHHHHHHHHhcCCCCC--EEEEEec
Confidence 56789999999975422 223333332 23 588999998764 3334444444334444 4589999
Q ss_pred CCC
Q psy10355 101 DDP 103 (156)
Q Consensus 101 Dl~ 103 (156)
|-+
T Consensus 323 Det 325 (388)
T PRK12723 323 DET 325 (388)
T ss_pred cCC
Confidence 965
No 403
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=93.73 E-value=0.33 Score=36.12 Aligned_cols=64 Identities=13% Similarity=0.117 Sum_probs=41.9
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINK 99 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK 99 (156)
..+.++|+|||.... ..........+|++|+|+.+..-. .......+..+...+.+-+=+|+|+
T Consensus 211 ~~yD~ViiD~pp~~~-~~d~~~~~~~~d~vilV~~~~~t~-------~~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 211 GDYDVVIVDTPSAEH-SSDAQIVATRARGTLIVSRVNETR-------LHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred hcCCEEEEeCCCccc-ccHHHHHHHhCCeEEEEEECCCCC-------HHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 347799999997643 233555567889999999875533 2344555666666677744556664
No 404
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=93.41 E-value=0.11 Score=33.49 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=16.9
Q ss_pred EEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeeccc
Q psy10355 96 LINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGEL 143 (156)
Q Consensus 96 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 143 (156)
++||+|+.. ....++.++++. .+.+++|+||..
T Consensus 1 AaNK~D~~~---a~~ni~kl~~~~------------~~~~vVp~SA~a 33 (109)
T PF08438_consen 1 AANKADLPA---ADENIEKLKEKY------------PDEPVVPTSAAA 33 (109)
T ss_dssp EEE-GGG-S----HHHHHHHHHHH------------TT-EEEEE-HHH
T ss_pred CCccccccc---cHhHHHHHHHhC------------CCCceeeccHHH
Confidence 689999743 223344444322 245889999874
No 405
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.39 E-value=0.48 Score=36.48 Aligned_cols=64 Identities=17% Similarity=0.322 Sum_probs=38.5
Q ss_pred CCeEEEEEeCCCCcCh----HHHHH---hhhhcCCE-----EEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcEE
Q psy10355 28 DRKHFTILDAPGHKSF----VPNMI---GGTAQADL-----AVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHLV 94 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~----~~~~~---~~~~~~d~-----~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i 94 (156)
.++.+.|+||+|-... ..... +.+...+. +++++|++.|. +.....+.... .++. -
T Consensus 220 r~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq---------nal~QAk~F~eav~l~--G 288 (340)
T COG0552 220 RGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ---------NALSQAKIFNEAVGLD--G 288 (340)
T ss_pred cCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh---------hHHHHHHHHHHhcCCc--e
Confidence 4578999999995432 22222 22222233 78888998873 34444444443 4555 4
Q ss_pred EEEeCCCC
Q psy10355 95 VLINKMDD 102 (156)
Q Consensus 95 vv~NK~Dl 102 (156)
++++|+|-
T Consensus 289 iIlTKlDg 296 (340)
T COG0552 289 IILTKLDG 296 (340)
T ss_pred EEEEeccc
Confidence 58999994
No 406
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.36 E-value=0.39 Score=38.36 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=39.9
Q ss_pred CCeEEEEEeCCCCcChH----HHHHhhhh---cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFV----PNMIGGTA---QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~----~~~~~~~~---~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
.+..+.|+||||..... ......+. ...-+.+|++++.+. ....+.+......+.. -+++||+
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--------~~l~~~~~~f~~~~~~--~vI~TKl 367 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--------EDLKDIYKHFSRLPLD--GLIFTKL 367 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--------HHHHHHHHHhCCCCCC--EEEEecc
Confidence 35789999999985432 22223323 234678889987653 2334444444444443 4689999
Q ss_pred CCC
Q psy10355 101 DDP 103 (156)
Q Consensus 101 Dl~ 103 (156)
|..
T Consensus 368 Det 370 (424)
T PRK05703 368 DET 370 (424)
T ss_pred ccc
Confidence 964
No 407
>PRK11670 antiporter inner membrane protein; Provisional
Probab=92.94 E-value=0.42 Score=37.47 Aligned_cols=69 Identities=13% Similarity=0.074 Sum_probs=42.4
Q ss_pred eCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 27 TDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 27 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
++.+.+.++|||..-.....+...+..+|.+++|+.+..-. .......+......+++.+-++.|+.+.
T Consensus 213 ~~~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~tp~~~s-------~~da~~~i~~~~~~~~~ilGiV~Nm~~~ 281 (369)
T PRK11670 213 WPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIA-------LIDAKKGIVMFEKVEVPVLGIVENMSMH 281 (369)
T ss_pred hccCCEEEEeCCCCCchHHHHHhhhccCCeEEEEecCchhH-------HHHHHHHHHHHhccCCCeEEEEEcCCcc
Confidence 45688999999875333223444555689988888664321 1223334444445677744579999874
No 408
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=92.86 E-value=0.43 Score=35.33 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=39.2
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-HHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-KTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ivv~NK~D 101 (156)
+.+.+.|+||||..... ....++..+|.+|+++.++.... ....+..+.+... ...+++...+++|+++
T Consensus 114 ~~yD~vIIDt~g~~~~~-~~~~al~~aD~vlip~~p~~~~l----~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~ 183 (267)
T cd02032 114 EEYDVILFDVLGDVVCG-GFAAPLNYADYALIVTDNDFDSI----FAANRIAAAVREKAKTYKVRLAGLIANRTD 183 (267)
T ss_pred ccCCEEEEeCCCCcccc-cchhhhhhcCEEEEEecCCcccH----HHHHHHHHHHHHHhhccCCceEEEEEeCCC
Confidence 45789999999864321 23345788999999988754321 0011222222222 1234543346899998
No 409
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=92.60 E-value=0.56 Score=33.51 Aligned_cols=69 Identities=14% Similarity=-0.010 Sum_probs=38.8
Q ss_pred eCCeEEEEEeCCCCcChHHHH-HhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc----CCCcEEEEEeCCC
Q psy10355 27 TDRKHFTILDAPGHKSFVPNM-IGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA----GVKHLVVLINKMD 101 (156)
Q Consensus 27 ~~~~~~~iiDtpG~~~~~~~~-~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ivv~NK~D 101 (156)
.+.+.+.++||||........ ..+.+.+|.+++++.++... .......+..+... +.+...++.||++
T Consensus 114 ~~~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~~s-------l~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~ 186 (212)
T cd02117 114 EDDLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEFMA-------LYAANNICKGIRKYAKSGGVRLGGLICNSRN 186 (212)
T ss_pred ccCCCEEEEecCCCceecccccccccccCcEEEEEecccHHH-------HHHHHHHHHHHHHhCcccCCcEEEEEEeCCC
Confidence 356889999998865322211 11124789999999875422 11122233333322 3342458999999
Q ss_pred C
Q psy10355 102 D 102 (156)
Q Consensus 102 l 102 (156)
.
T Consensus 187 ~ 187 (212)
T cd02117 187 T 187 (212)
T ss_pred C
Confidence 4
No 410
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.36 E-value=0.5 Score=40.44 Aligned_cols=67 Identities=15% Similarity=0.050 Sum_probs=44.3
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
+.+.+++||||+..... ........+|++++|+...... .......+..+...+.+..-+|+|++|.
T Consensus 654 ~~yD~IiID~pp~~~~~-d~~~l~~~~D~vl~v~~~~~~~-------~~~~~~~~~~l~~~~~~~~GvvlN~~~~ 720 (754)
T TIGR01005 654 LYSDCVVVDVGTADPVR-DMRAAARLAIIMLLVTAYDRVV-------VECGRADAQGISRLNGEVTGVFLNMLDP 720 (754)
T ss_pred hhCCEEEEcCCCcchhH-HHHHhhhhCCeEEEEEEeCcee-------HHHHHHHHHHHHhcCCceEEEEecCCCh
Confidence 34789999999985432 3334455789999998764322 2334455556666666645689999994
No 411
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=92.33 E-value=0.065 Score=34.31 Aligned_cols=50 Identities=8% Similarity=0.028 Sum_probs=28.5
Q ss_pred HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 47 MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 47 ~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
...+.+.++++++|++..... ++. ..+...+........+ .+++.||.|+
T Consensus 40 ~~~~~~s~~~~~~v~~~~~~~---s~~--~~~~~~i~~~~k~dl~-~~~~~nk~dl 89 (124)
T smart00010 40 DPTSYESFDVVLQCWRVDDRD---SAD--NKNVPEVLVGNKSDLP-ILVGGNRDVL 89 (124)
T ss_pred cccccCCCCEEEEEEEccCHH---HHH--HHhHHHHHhcCCCCCc-EEEEeechhh
Confidence 445667889998888876532 111 0122222222223355 6889999996
No 412
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=92.26 E-value=0.45 Score=36.38 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=41.1
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
..+.+.++|||+... ......+..+|.+++|++++... .......+..+...+.. +-+++|...
T Consensus 203 ~~~D~VIID~p~~~~--~~~~~~L~~AD~vliV~~~~~~s-------l~~a~r~l~~l~~~~~~-~~lVv~~~~ 266 (322)
T TIGR03815 203 RGGDLVVVDLPRRLT--PAAETALESADLVLVVVPADVRA-------VAAAARVCPELGRRNPD-LRLVVRGPA 266 (322)
T ss_pred hcCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEcCCcHHH-------HHHHHHHHHHHhhhCCC-eEEEEeCCC
Confidence 347899999998854 34677889999999999775422 12233344444444433 555677654
No 413
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=92.11 E-value=0.67 Score=35.68 Aligned_cols=90 Identities=18% Similarity=0.117 Sum_probs=49.0
Q ss_pred eEEEEEeCCCCcChHHHHHhhh--------hcCCEEEEEEeCCCCccccccCCCcc-h-HHHHHHHHHcCCCcEEEEEeC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGT--------AQADLAVLVISARKGEFETGFDRGGQ-T-REHAMLAKTAGVKHLVVLINK 99 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~--------~~~d~~ilvvD~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ivv~NK 99 (156)
....+|-|.|.-.-.+...... -..|+++-|||+..... ... . .....++... . ++++||
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~------~~~~~~~~~~~Qia~A--D--~ivlNK 154 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLE------GLDAIAELAEDQLAFA--D--VIVLNK 154 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhh------hHHHHHHHHHHHHHhC--c--EEEEec
Confidence 5678888999755433222222 23578999999976541 011 1 1122223222 3 779999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeec
Q psy10355 100 MDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSG 141 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 141 (156)
.|++.. .....+++. ++.++ ...+++.+|.
T Consensus 155 ~Dlv~~----~~l~~l~~~----l~~ln----p~A~i~~~~~ 184 (323)
T COG0523 155 TDLVDA----EELEALEAR----LRKLN----PRARIIETSY 184 (323)
T ss_pred ccCCCH----HHHHHHHHH----HHHhC----CCCeEEEccc
Confidence 998742 223333333 34443 2457777776
No 414
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.87 E-value=0.44 Score=38.01 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=40.8
Q ss_pred eCCeEEEEEeCCCCcChHHH---HHhhhh---cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 27 TDRKHFTILDAPGHKSFVPN---MIGGTA---QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 27 ~~~~~~~iiDtpG~~~~~~~---~~~~~~---~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
..+..+.++||+|....... ....+. ...-.+||+|++.+. ....+.+......++. =++++|+
T Consensus 267 l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--------~~~~~~~~~f~~~~~~--~~I~TKl 336 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--------DTLDEVISAYQGHGIH--GCIITKV 336 (420)
T ss_pred hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--------HHHHHHHHHhcCCCCC--EEEEEee
Confidence 35678999999997653221 111122 234678999998643 2333444444445555 4589999
Q ss_pred CCCC
Q psy10355 101 DDPT 104 (156)
Q Consensus 101 Dl~~ 104 (156)
|.+.
T Consensus 337 DEt~ 340 (420)
T PRK14721 337 DEAA 340 (420)
T ss_pred eCCC
Confidence 9653
No 415
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=91.31 E-value=0.73 Score=33.45 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=27.2
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~ 65 (156)
+.+.++|||+. ....+..++..+|.+++++.++.
T Consensus 115 ~D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~~ 148 (246)
T TIGR03371 115 RDWVLIDVPRG--PSPITRQALAAADLVLVVVNADA 148 (246)
T ss_pred CCEEEEECCCC--chHHHHHHHHhCCeEEEEeCCCH
Confidence 47999999995 34556778889999999998753
No 416
>PRK09602 translation-associated GTPase; Reviewed
Probab=91.24 E-value=0.37 Score=38.11 Aligned_cols=45 Identities=22% Similarity=0.226 Sum_probs=28.8
Q ss_pred cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 88 AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 88 ~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
...| +++|+||+|+... ...+. .+.. . + ...++++||+.+.|++.
T Consensus 216 t~KP-vI~VlNK~D~~~~---~~~l~----~i~~---~-~-----~~~vvpISA~~e~~l~~ 260 (396)
T PRK09602 216 ISKP-MVIAANKADLPPA---EENIE----RLKE---E-K-----YYIVVPTSAEAELALRR 260 (396)
T ss_pred cCCC-EEEEEEchhcccc---hHHHH----HHHh---c-C-----CCcEEEEcchhhhhHHH
Confidence 4567 8999999996421 11111 1211 1 2 24789999999999876
No 417
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=91.17 E-value=1.1 Score=35.00 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=49.0
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC--CCcEEEEEeCCCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG--VKHLVVLINKMDDPT 104 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ivv~NK~Dl~~ 104 (156)
.+.+.++|.| ......+...+.++|.+++|++.+-.. .....+.+..+++.+ .++..+++||.+...
T Consensus 217 ~~~~vV~Dlp--~~~~~~t~~vL~~Sd~iviv~e~sl~s-------lR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~ 285 (366)
T COG4963 217 SFDFVVVDLP--NIWTDWTRQVLSGSDEIVIVAEPSLAS-------LRNAKELLDELKRLRPNDPKPILVLNRVGVPK 285 (366)
T ss_pred cCCeEEEcCC--CccchHHHHHHhcCCeEEEEecccHHH-------HHHHHHHHHHHHHhCCCCCCceEEeeecCCCC
Confidence 4779999999 566778889999999999999886433 234455555555532 333689999999653
No 418
>PRK10818 cell division inhibitor MinD; Provisional
Probab=91.17 E-value=0.98 Score=33.42 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=28.0
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~ 66 (156)
.+.+.++|||+.... .....+..+|.++++++++..
T Consensus 113 ~yd~viiD~p~~~~~--~~~~~l~~ad~vivv~~p~~~ 148 (270)
T PRK10818 113 DFEFIVCDSPAGIET--GALMALYFADEAIITTNPEVS 148 (270)
T ss_pred CCCEEEEeCCCCccH--HHHHHHHhCCeEEEEcCCCch
Confidence 588999999987543 345567889999999988643
No 419
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=91.14 E-value=0.65 Score=34.41 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=38.6
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~D 101 (156)
+++.+.|+||||...... +..++..+|.+|+++.+..... ....+....+.... ..+++..-++.|+.+
T Consensus 116 ~~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~~~~sl----~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 116 DDYDVILFDVLGDVVCGG-FAAPLQYADYALIVTANDFDSI----FAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred ccCCEEEEecCCCcccCc-ccchhhhCcEEEEEecCchhhH----HHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 468899999998643221 3345778899999987744211 00012222222111 234552347899977
No 420
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=90.85 E-value=4.8 Score=29.74 Aligned_cols=68 Identities=12% Similarity=0.013 Sum_probs=42.9
Q ss_pred CCeEEEEEeCCCCcChH---HH---H---Hhhhh--cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEE
Q psy10355 28 DRKHFTILDAPGHKSFV---PN---M---IGGTA--QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVL 96 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~---~~---~---~~~~~--~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv 96 (156)
..+.+.++|||...... .. + ...+. ..+.+++|+.+..-. .......+..+...+++..-+|
T Consensus 123 ~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~~~~vlV~~p~~~~-------~~e~~r~~~~L~~~g~~v~gvV 195 (254)
T cd00550 123 AEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPERTSFRLVCIPEKMS-------LYETERAIQELAKYGIDVDAVI 195 (254)
T ss_pred CCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcceEEEEEeCCChhH-------HHHHHHHHHHHHHCCCCCCEEE
Confidence 46889999999753221 11 0 11222 245788888775433 2445566777777888755789
Q ss_pred EeCCCC
Q psy10355 97 INKMDD 102 (156)
Q Consensus 97 ~NK~Dl 102 (156)
+|++.-
T Consensus 196 ~N~v~~ 201 (254)
T cd00550 196 VNQLLP 201 (254)
T ss_pred EecCcc
Confidence 999974
No 421
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=90.85 E-value=3.9 Score=31.73 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=24.6
Q ss_pred eEEEEEeCCCCcChHHHHHhh-------hhcCCEEEEEEeCCC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGG-------TAQADLAVLVISARK 65 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~-------~~~~d~~ilvvD~~~ 65 (156)
....++.|.|.-+........ .-..|+++.|||+..
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECch
Confidence 468899999987654333222 124588999999964
No 422
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=90.57 E-value=2.5 Score=31.54 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=42.6
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEE--EEEeCCC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLV--VLINKMD 101 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--vv~NK~D 101 (156)
+.+.++|||+--. ..+..++..+|.+|+|..+.... ..+....+..+...+.+... +++|+++
T Consensus 113 ~D~iliD~~aGl~--~~~~~~~~~sd~~viVt~pe~~s-------i~~A~~~i~~~~~~~~~~~~~~vV~N~v~ 177 (262)
T COG0455 113 YDYILIDTGAGLS--RDTLSFILSSDELVIVTTPEPTS-------ITDAYKTIKILSKLGLDLLGRRVVLNRVR 177 (262)
T ss_pred CCEEEEeCCCCcc--HHHHHHHHhcCcEEEEeCCCcch-------HHHHHHHHHHHHHcCCccccceEEEEecc
Confidence 4799999998633 34456666669999998775432 13344556666666666333 8999998
No 423
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=90.38 E-value=0.78 Score=33.94 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=37.6
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ivv~NK~D 101 (156)
+.+.+.++||||..... .+...+..+|.+++++.++.... ......+..+. ..+++..-+++|+++
T Consensus 114 ~~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl-------~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~ 183 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDAL-------FAANRIAASVQEKAKNYDVRLAGIIGNRSD 183 (268)
T ss_pred ccCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHH-------HHHHHHHHHHHHHhhcCCCceEEEEEeCCC
Confidence 46889999999853211 11235678899998876643210 11222222222 234553457899998
No 424
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.34 E-value=1.2 Score=38.21 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=37.3
Q ss_pred CCeEEEEEeCCCCcCh----HHHHHhh--hhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc---CCCcEEEEEe
Q psy10355 28 DRKHFTILDAPGHKSF----VPNMIGG--TAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA---GVKHLVVLIN 98 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~----~~~~~~~--~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~N 98 (156)
.++.++||||||.... ....... ....+-.++|+|++... ....+.+...... ++. =++++
T Consensus 262 ~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~--------~~l~~i~~~f~~~~~~~i~--glIlT 331 (767)
T PRK14723 262 GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHG--------DTLNEVVHAYRHGAGEDVD--GCIIT 331 (767)
T ss_pred cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcH--------HHHHHHHHHHhhcccCCCC--EEEEe
Confidence 4568999999994322 1111111 12345689999997642 2223343333321 344 45799
Q ss_pred CCCCCC
Q psy10355 99 KMDDPT 104 (156)
Q Consensus 99 K~Dl~~ 104 (156)
|+|-..
T Consensus 332 KLDEt~ 337 (767)
T PRK14723 332 KLDEAT 337 (767)
T ss_pred ccCCCC
Confidence 999653
No 425
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=90.21 E-value=1.4 Score=37.71 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=44.2
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
.+.++|+|||....... .......+|++++|+...... .......+..+...+.+-+-+|+|+++.
T Consensus 640 ~yD~IIIDtPP~~~~~D-a~~la~~ad~~llVvr~~~t~-------~~~~~~~~~~l~~~~~~~~G~VlN~~~~ 705 (726)
T PRK09841 640 HYDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLNT-------AKEVSLSMQRLEQAGVNIKGAILNGVIK 705 (726)
T ss_pred cCCEEEEeCCCccccch-HHHHHHhCCeEEEEEeCCCCC-------HHHHHHHHHHHHhCCCceEEEEEeCccc
Confidence 47899999998754422 233346789999998764432 1344555666666777745689999984
No 426
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=89.60 E-value=1.4 Score=34.98 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=43.0
Q ss_pred CCeEEEEEeCCCCcCh----HHHHHhhhhcC--CEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSF----VPNMIGGTAQA--DLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~----~~~~~~~~~~~--d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.++.++++||+|...+ ...+..++..+ .-+-||++++... ....+++......++. =++++|+|
T Consensus 280 ~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--------~dlkei~~~f~~~~i~--~~I~TKlD 349 (407)
T COG1419 280 RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--------EDLKEIIKQFSLFPID--GLIFTKLD 349 (407)
T ss_pred hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--------HHHHHHHHHhccCCcc--eeEEEccc
Confidence 4568999999998654 33344444333 2456788886532 4455666666666666 34799999
Q ss_pred CCC
Q psy10355 102 DPT 104 (156)
Q Consensus 102 l~~ 104 (156)
.+.
T Consensus 350 ET~ 352 (407)
T COG1419 350 ETT 352 (407)
T ss_pred ccC
Confidence 764
No 427
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=89.29 E-value=0.66 Score=28.93 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=26.6
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~ 65 (156)
+.+.++|+|+.... .....+..+|.++++++++.
T Consensus 40 ~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 40 YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQPSP 73 (104)
T ss_pred CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccCCH
Confidence 67999999997543 34477788999999998854
No 428
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.21 E-value=1.2 Score=36.20 Aligned_cols=67 Identities=16% Similarity=0.198 Sum_probs=37.9
Q ss_pred eCCeEEEEEeCCCCcChHHH---HHhhhhc---CCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 27 TDRKHFTILDAPGHKSFVPN---MIGGTAQ---ADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 27 ~~~~~~~iiDtpG~~~~~~~---~~~~~~~---~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
..++.+.++||+|....... ....+.. ..-.++|+|++.+. ....+........+.. -+++||+
T Consensus 332 L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--------~~l~~i~~~f~~~~~~--g~IlTKl 401 (484)
T PRK06995 332 LRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--------DTLNEVVQAYRGPGLA--GCILTKL 401 (484)
T ss_pred ccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--------HHHHHHHHHhccCCCC--EEEEeCC
Confidence 34567999999995433221 1111111 12378999997653 2333344444444444 4578999
Q ss_pred CCC
Q psy10355 101 DDP 103 (156)
Q Consensus 101 Dl~ 103 (156)
|-.
T Consensus 402 Det 404 (484)
T PRK06995 402 DEA 404 (484)
T ss_pred CCc
Confidence 964
No 429
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=89.21 E-value=0.77 Score=41.36 Aligned_cols=72 Identities=13% Similarity=0.083 Sum_probs=38.2
Q ss_pred eEEEEEeCCCCcC--------hHHHHHhhh---------hcCCEEEEEEeCCCCccccccCC----CcchHHHHHHHH--
Q psy10355 30 KHFTILDAPGHKS--------FVPNMIGGT---------AQADLAVLVISARKGEFETGFDR----GGQTREHAMLAK-- 86 (156)
Q Consensus 30 ~~~~iiDtpG~~~--------~~~~~~~~~---------~~~d~~ilvvD~~~~~~~~~~~~----~~~~~~~~~~~~-- 86 (156)
.+-+++||+|..- ....|...+ +-.+++|+++|..+-.. ..-.. .......+..+.
T Consensus 161 ~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~-~~~~~~~~~a~~lR~rl~el~~~ 239 (1169)
T TIGR03348 161 DEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLT-ADPAERKAHARAIRQRLQELREQ 239 (1169)
T ss_pred CCEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 4667999999421 112222222 34799999999865331 00000 000111111111
Q ss_pred -HcCCCcEEEEEeCCCCC
Q psy10355 87 -TAGVKHLVVLINKMDDP 103 (156)
Q Consensus 87 -~~~~~~~ivv~NK~Dl~ 103 (156)
....| +-++++|+|+.
T Consensus 240 lg~~~P-VYvv~Tk~Dll 256 (1169)
T TIGR03348 240 LGARFP-VYLVLTKADLL 256 (1169)
T ss_pred hCCCCC-EEEEEecchhh
Confidence 13578 89999999976
No 430
>PRK11519 tyrosine kinase; Provisional
Probab=89.17 E-value=2 Score=36.76 Aligned_cols=66 Identities=9% Similarity=0.061 Sum_probs=45.4
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
.+.++|+|||...-. .......+.+|++++|+-...-. .......+..+...+.+-+=+|+|+++.
T Consensus 635 ~yD~ViiDtpP~~~v-~Da~~l~~~~d~~l~Vvr~~~t~-------~~~~~~~~~~l~~~~~~~~G~VlN~v~~ 700 (719)
T PRK11519 635 NYDLVLIDTPPILAV-TDAAIVGRHVGTTLMVARYAVNT-------LKEVETSLSRFEQNGIPVKGVILNSIFR 700 (719)
T ss_pred cCCEEEEeCCCcccc-hHHHHHHHHCCeEEEEEeCCCCC-------HHHHHHHHHHHHhCCCCeEEEEEeCCcc
Confidence 478999999987543 34445568899999999775432 2334445566666777744589999984
No 431
>PRK10037 cell division protein; Provisional
Probab=89.03 E-value=1.8 Score=31.77 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=28.8
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISAR 64 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~ 64 (156)
+.+.+.|+|||+... ..+..++..+|.+|+++.+.
T Consensus 116 ~~yD~iiIDtpp~~~--~~~~~al~aaD~vlvpv~~~ 150 (250)
T PRK10037 116 GRYQWILLDLPRGAS--PLTRQLLSLCDHSLAIVNVD 150 (250)
T ss_pred CCCCEEEEECCCCcc--HHHHHHHHhCCEEEEEcCcC
Confidence 568899999999854 45777888999999999763
No 432
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=88.95 E-value=1.4 Score=34.76 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=27.7
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISAR 64 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~ 64 (156)
+.+.++|+|||+...+ .+..++.-+|.+|+.+.+.
T Consensus 233 ~~YD~IlID~pPslg~--lt~nAL~AAd~vliPv~~~ 267 (387)
T PHA02519 233 DNYDIIVIDSAPNLGT--GTINVVCAADVIVVATPAE 267 (387)
T ss_pred ccCCEEEEECCCCccH--HHHHHHHHhCEEEEecCCc
Confidence 4588999999998654 5677888889988888664
No 433
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=88.94 E-value=1.3 Score=33.55 Aligned_cols=69 Identities=7% Similarity=0.041 Sum_probs=38.4
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~NK~D 101 (156)
+++.+.++||||.... .....++..||.+|++++++.... .......+.+..... .+.+..-+++|+.+
T Consensus 114 ~~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl----~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~ 183 (290)
T CHL00072 114 YEYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDAL----FAANRIAASVREKARTHPLRLAGLVGNRTS 183 (290)
T ss_pred ccCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHH----HHHHHHHHHHHHHhccCCCceEEEEEeCCC
Confidence 3578999999986321 122345678999999988754321 001112222222221 23443447899988
No 434
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=88.08 E-value=3.6 Score=28.57 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=33.9
Q ss_pred CeEEEEEeCCCCcChHHH-----HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH-HHHHHcCCCcEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPN-----MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA-MLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~-----~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ivv~NK~Dl 102 (156)
+....|+-+.|..+-... .....-..+.+|.|+|+..... .......+ .++ ..-. ++++||+|+
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~------~~~~~~~~~~Qi---~~AD-vIvlnK~D~ 153 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDE------LENIPELLREQI---AFAD-VIVLNKIDL 153 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGG------HTTHCHHHHHHH---CT-S-EEEEE-GGG
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccc------cccchhhhhhcc---hhcC-EEEEecccc
Confidence 346788888886544333 1111233588999999955220 01111111 222 2222 779999997
Q ss_pred C
Q psy10355 103 P 103 (156)
Q Consensus 103 ~ 103 (156)
.
T Consensus 154 ~ 154 (178)
T PF02492_consen 154 V 154 (178)
T ss_dssp H
T ss_pred C
Confidence 6
No 435
>KOG0085|consensus
Probab=87.71 E-value=0.059 Score=39.52 Aligned_cols=88 Identities=14% Similarity=0.158 Sum_probs=53.7
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCC--CcchHHH---HHHHHH-
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR--GGQTREH---AMLAKT- 87 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~--~~~~~~~---~~~~~~- 87 (156)
|--|.++..++|...+..|-++|..|+..-.+.|+..+.+.-.+++++..++.. +-..+. ....++. ++.+..
T Consensus 183 RvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYD-QvL~E~dnENRMeESkALFrTIi~y 261 (359)
T KOG0085|consen 183 RVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYD-QVLVESDNENRMEESKALFRTIITY 261 (359)
T ss_pred ecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHccchhhHHHHHHHHHHHhcc
Confidence 334667778888889999999999999887777777777766666655443211 000000 1112221 111111
Q ss_pred ---cCCCcEEEEEeCCCCC
Q psy10355 88 ---AGVKHLVVLINKMDDP 103 (156)
Q Consensus 88 ---~~~~~~ivv~NK~Dl~ 103 (156)
.+-+ +|+.+||.|+.
T Consensus 262 PWF~nss-VIlFLNKkDlL 279 (359)
T KOG0085|consen 262 PWFQNSS-VILFLNKKDLL 279 (359)
T ss_pred ccccCCc-eEEEechhhhh
Confidence 2445 89999999975
No 436
>KOG3022|consensus
Probab=87.71 E-value=1 Score=33.93 Aligned_cols=65 Identities=14% Similarity=0.241 Sum_probs=42.6
Q ss_pred EEeCCeEEEEEeCCC-CcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEE
Q psy10355 25 FETDRKHFTILDAPG-HKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLI 97 (156)
Q Consensus 25 ~~~~~~~~~iiDtpG-~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~ 97 (156)
..|++-.+.++|||- ..+-.-....+++.++++|+|.-+..-. ..+....+...++.++| ++=++
T Consensus 152 vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vA-------l~Dv~K~i~fc~K~~I~-ilGvV 217 (300)
T KOG3022|consen 152 VDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVA-------LQDVRKEIDFCRKAGIP-ILGVV 217 (300)
T ss_pred CCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchhhh-------hHHHHhhhhhhhhcCCc-eEEEE
Confidence 356678899999984 4444445566667779988887664322 23445566777888888 44433
No 437
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=87.59 E-value=4.9 Score=30.86 Aligned_cols=66 Identities=12% Similarity=0.024 Sum_probs=37.0
Q ss_pred eEEEEEeCCCCcChHHHHHhhh--------hcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGT--------AQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~--------~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
....++-|.|.-+-........ -..++++.|+|+..... .. ........++.. .. ++++||+|
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~--~~---~~~~~~~~Qi~~--AD--~IvlnK~D 161 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADE--QM---NQFTIAQSQVGY--AD--RILLTKTD 161 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhh--hc---cccHHHHHHHHh--CC--EEEEeccc
Confidence 4578899999866433322221 13488999999975431 11 111111222222 23 67999999
Q ss_pred CCC
Q psy10355 102 DPT 104 (156)
Q Consensus 102 l~~ 104 (156)
+..
T Consensus 162 l~~ 164 (318)
T PRK11537 162 VAG 164 (318)
T ss_pred cCC
Confidence 864
No 438
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=87.16 E-value=3.4 Score=29.37 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=22.3
Q ss_pred EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCC
Q psy10355 31 HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66 (156)
Q Consensus 31 ~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~ 66 (156)
.+.++|||..... ......+..+|.+|+|+.+...
T Consensus 150 D~IiiD~pp~~~~-~~~~~l~~~aD~viiV~~~~~~ 184 (207)
T TIGR03018 150 RIIIIDTPPLLVF-SEARALARLVGQIVLVVEEGRT 184 (207)
T ss_pred CEEEEECCCCcch-hHHHHHHHhCCEEEEEEECCCC
Confidence 5888888876542 2233334567888888877553
No 439
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=86.43 E-value=3.4 Score=32.64 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=27.4
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISAR 64 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~ 64 (156)
+.+.++|+|||+.. ...+..++.-+|.+|+.+.+.
T Consensus 233 ~~YD~IiIDtpP~l--~~~t~nal~AaD~viiP~~~~ 267 (388)
T PRK13705 233 HDYDVIVIDSAPNL--GIGTINVVCAADVLIVPTPAE 267 (388)
T ss_pred ccCCEEEEECCCch--hHHHHHHHHHcCEEEEecCCc
Confidence 45789999999874 345677778889998888664
No 440
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=86.32 E-value=2.6 Score=33.13 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=28.2
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~ 65 (156)
+.+.++|+|||+... ..+..++..+|.+|+++.+..
T Consensus 233 ~~yD~IiiD~pp~~~--~~~~~al~aad~viipv~p~~ 268 (387)
T TIGR03453 233 DDYDVVVIDCPPQLG--FLTLSALCAATGVLITVHPQM 268 (387)
T ss_pred hcCCEEEEeCCccHh--HHHHHHHHHcCeeEEcCCCch
Confidence 457899999999753 457778888999998887643
No 441
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=86.11 E-value=3.7 Score=29.75 Aligned_cols=50 Identities=10% Similarity=-0.039 Sum_probs=31.7
Q ss_pred ceeeeeeEEEEe---CCeEEEEEeCCCCcCh------HHHHHhhhhc--CCEEEEEEeCCC
Q psy10355 16 KTVEVGRAYFET---DRKHFTILDAPGHKSF------VPNMIGGTAQ--ADLAVLVISARK 65 (156)
Q Consensus 16 ~t~~~~~~~~~~---~~~~~~iiDtpG~~~~------~~~~~~~~~~--~d~~ilvvD~~~ 65 (156)
.|.++-.+.... .+..+.++||||..+. ......++.. ++++|+.++...
T Consensus 43 ~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 43 TTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred CccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 344444443333 3678999999998542 2334445544 899999988754
No 442
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=85.12 E-value=3.1 Score=32.71 Aligned_cols=52 Identities=12% Similarity=0.147 Sum_probs=38.5
Q ss_pred cCceeeeeeEEEEeCC-----------------eEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCC
Q psy10355 14 KGKTVEVGRAYFETDR-----------------KHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~-----------------~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~ 65 (156)
+..|+++..+.+...+ ..+.++|.||... +.......++.+|++++|+|+.+
T Consensus 34 pftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 34 PFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred CCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 4556677776666544 3689999999754 34466778899999999999853
No 443
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=84.10 E-value=5 Score=31.92 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=28.7
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~ 65 (156)
+.+.++|+|||+... ..+..++.-+|.+|+.+.+..
T Consensus 250 ~~yD~IiIDtpP~l~--~~t~~al~aAd~viiPv~p~~ 285 (405)
T PRK13869 250 DDYDVVVIDCPPQLG--FLTLSGLCAATSMVITVHPQM 285 (405)
T ss_pred ccCCEEEEECCCchh--HHHHHHHHHcCEEEEecCCcH
Confidence 468899999999854 457778888999999887643
No 444
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=83.25 E-value=7.1 Score=32.35 Aligned_cols=43 Identities=28% Similarity=0.348 Sum_probs=29.3
Q ss_pred cchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcC
Q psy10355 76 GQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127 (156)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (156)
.+...++..++..|+| +++++||.|.-. .... +.+++++++.|
T Consensus 359 ~NL~RHIenvr~FGvP-vVVAINKFd~DT----e~Ei----~~I~~~c~e~G 401 (557)
T PRK13505 359 ANLERHIENIRKFGVP-VVVAINKFVTDT----DAEI----AALKELCEELG 401 (557)
T ss_pred HHHHHHHHHHHHcCCC-EEEEEeCCCCCC----HHHH----HHHHHHHHHcC
Confidence 3456688888889999 899999999631 1122 33556666654
No 445
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=82.23 E-value=6.4 Score=24.42 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=30.9
Q ss_pred cChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEE
Q psy10355 41 KSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVV 95 (156)
Q Consensus 41 ~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 95 (156)
..........+..+|++|++.|.-.. ......-..+...++| ++.
T Consensus 36 ~~~~~~l~~~i~~aD~VIv~t~~vsH---------~~~~~vk~~akk~~ip-~~~ 80 (97)
T PF10087_consen 36 EKKASRLPSKIKKADLVIVFTDYVSH---------NAMWKVKKAAKKYGIP-IIY 80 (97)
T ss_pred ccchhHHHHhcCCCCEEEEEeCCcCh---------HHHHHHHHHHHHcCCc-EEE
Confidence 33344577888999999999998663 2344455666777888 553
No 446
>KOG1533|consensus
Probab=82.13 E-value=2 Score=31.84 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=40.2
Q ss_pred CeEEEEEeCCCCcCh------HHHHHhhhhcCC---EEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeC
Q psy10355 29 RKHFTILDAPGHKSF------VPNMIGGTAQAD---LAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINK 99 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~------~~~~~~~~~~~d---~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK 99 (156)
...+.++|+||+-++ .......++..+ +++-++|+.-.--...| ..-....+.-+.....|| |=|+.|
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~--iS~lL~sl~tMl~melph-VNvlSK 172 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKF--ISSLLVSLATMLHMELPH-VNVLSK 172 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHH--HHHHHHHHHHHHhhcccc-hhhhhH
Confidence 467899999998543 344555565555 45556665322100000 011112223333456787 779999
Q ss_pred CCCCC
Q psy10355 100 MDDPT 104 (156)
Q Consensus 100 ~Dl~~ 104 (156)
+|+..
T Consensus 173 ~Dl~~ 177 (290)
T KOG1533|consen 173 ADLLK 177 (290)
T ss_pred hHHHH
Confidence 99754
No 447
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=81.94 E-value=3.2 Score=29.76 Aligned_cols=68 Identities=10% Similarity=0.088 Sum_probs=35.7
Q ss_pred CCeEEEEEeCCCCcC--hHH--HHHhhhh-cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKS--FVP--NMIGGTA-QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~--~~~--~~~~~~~-~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
.++.+.++|+||... +.. .....++ ...-+++|.+...+. .......+..+...+.+..-+++|+++-
T Consensus 102 ~~~D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~~~-------i~~~~~~i~~l~~~~~~i~gvIlN~~~~ 174 (222)
T PRK00090 102 QQYDLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGC-------INHTLLTLEAIRARGLPLAGWVANGIPP 174 (222)
T ss_pred hhCCEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCCcH-------HHHHHHHHHHHHHCCCCeEEEEEccCCC
Confidence 457899999998521 110 0111111 112367777764432 1223344444555676633578999984
No 448
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=81.57 E-value=6.5 Score=28.89 Aligned_cols=38 Identities=24% Similarity=0.140 Sum_probs=24.9
Q ss_pred CCeEEEEEeCCCCcChHHH-HHhhhhcCCEEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPN-MIGGTAQADLAVLVISARK 65 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~-~~~~~~~~d~~ilvvD~~~ 65 (156)
+.+.+.|+||||....... ...++..+|.+|+++.++.
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~ 153 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM 153 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCch
Confidence 4678999999986532222 1122235899999998754
No 449
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=81.54 E-value=8.3 Score=31.13 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeeccc
Q psy10355 79 REHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGEL 143 (156)
Q Consensus 79 ~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 143 (156)
+..+..++..|.| +++++|-.+=. .....++.+++...+ ++|++|+++..
T Consensus 170 ervI~ELk~igKP-FvillNs~~P~-----s~et~~L~~eL~ekY---------~vpVlpvnc~~ 219 (492)
T PF09547_consen 170 ERVIEELKEIGKP-FVILLNSTKPY-----SEETQELAEELEEKY---------DVPVLPVNCEQ 219 (492)
T ss_pred HHHHHHHHHhCCC-EEEEEeCCCCC-----CHHHHHHHHHHHHHh---------CCcEEEeehHH
Confidence 3456777788999 99999988721 223344555555432 57888888764
No 450
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=80.94 E-value=6.5 Score=26.67 Aligned_cols=10 Identities=20% Similarity=0.667 Sum_probs=5.0
Q ss_pred eEEEEEeCCC
Q psy10355 30 KHFTILDAPG 39 (156)
Q Consensus 30 ~~~~iiDtpG 39 (156)
+.+.++|+||
T Consensus 100 ~D~viid~~g 109 (166)
T TIGR00347 100 YDFVLVEGAG 109 (166)
T ss_pred CCEEEEEcCC
Confidence 4455555554
No 451
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=80.73 E-value=7.8 Score=30.46 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=27.3
Q ss_pred eEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCC
Q psy10355 30 KHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISAR 64 (156)
Q Consensus 30 ~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~ 64 (156)
..+.|+|.||.-. +...-..-+|.+|+++.|||+.
T Consensus 67 ~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 67 APVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred eeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 3589999999743 3445667789999999999986
No 452
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=80.57 E-value=4 Score=30.13 Aligned_cols=38 Identities=18% Similarity=0.013 Sum_probs=24.3
Q ss_pred CCeEEEEEeCCCCcChHHHH-HhhhhcCCEEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNM-IGGTAQADLAVLVISARK 65 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~-~~~~~~~d~~ilvvD~~~ 65 (156)
+++.+.|+||||........ ......+|.+|+++.++.
T Consensus 112 ~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~ 150 (264)
T PRK13231 112 EDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEY 150 (264)
T ss_pred CCCCEEEEecCCCceEccccccccccccceeEEEecCch
Confidence 45789999999865322211 111257899999887744
No 453
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=80.42 E-value=6 Score=25.21 Aligned_cols=47 Identities=13% Similarity=0.153 Sum_probs=33.5
Q ss_pred HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 46 NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 46 ~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.-...++.||++|.++|..+. ...+.-.+-++...|+| ++++.+...
T Consensus 54 ~d~~~i~~~D~via~l~~~~~--------d~Gt~~ElG~A~algkp-v~~~~~d~~ 100 (113)
T PF05014_consen 54 RDLEGIRECDIVIANLDGFRP--------DSGTAFELGYAYALGKP-VILLTEDDR 100 (113)
T ss_dssp HHHHHHHHSSEEEEEECSSS----------HHHHHHHHHHHHTTSE-EEEEECCCC
T ss_pred HHHHHHHHCCEEEEECCCCCC--------CCcHHHHHHHHHHCCCE-EEEEEcCCc
Confidence 345677899999999998442 24566667778888988 676666555
No 454
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=78.88 E-value=2 Score=32.17 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=19.6
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCC
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGH 40 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~ 40 (156)
...+|+|.......+ +..+.++||||.
T Consensus 147 ~~~~g~T~~~~~~~~---~~~~~l~DtPG~ 173 (276)
T TIGR03596 147 GNRPGVTKGQQWIKL---SDGLELLDTPGI 173 (276)
T ss_pred CCCCCeecceEEEEe---CCCEEEEECCCc
Confidence 345788887765444 246899999998
No 455
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=78.64 E-value=2.4 Score=31.92 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=19.6
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCc
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHK 41 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~ 41 (156)
..+|+|........ +..+.++||||..
T Consensus 151 ~~~g~T~~~~~~~~---~~~~~l~DtPGi~ 177 (287)
T PRK09563 151 NRPGVTKAQQWIKL---GKGLELLDTPGIL 177 (287)
T ss_pred CCCCeEEEEEEEEe---CCcEEEEECCCcC
Confidence 35688888764443 3569999999974
No 456
>KOG2485|consensus
Probab=77.15 E-value=2 Score=32.96 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=25.4
Q ss_pred HHhhcCceeeeeeEEEEeCCeEEEEEeCCCC
Q psy10355 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGH 40 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~ 40 (156)
.-.++|+|+..+..--..+...+.++||||.
T Consensus 176 vG~~pGVT~~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 176 VGAEPGVTRRVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred ccCCCCceeeehhheEeccCCceEEecCCCc
Confidence 4458899999988666667778999999996
No 457
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=76.07 E-value=14 Score=21.85 Aligned_cols=36 Identities=17% Similarity=0.288 Sum_probs=26.2
Q ss_pred EEEEEeCCCCcChHHH-HHhhhhcCCEEEEEEeCCCC
Q psy10355 31 HFTILDAPGHKSFVPN-MIGGTAQADLAVLVISARKG 66 (156)
Q Consensus 31 ~~~iiDtpG~~~~~~~-~~~~~~~~d~~ilvvD~~~~ 66 (156)
.+.++|+||....... .......+|.+++++++...
T Consensus 35 d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 35 DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 8999999997543321 24566788999999988654
No 458
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=75.46 E-value=22 Score=26.08 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=35.6
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH---HcCCCcEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK---TAGVKHLVVLINKMDD 102 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ivv~NK~Dl 102 (156)
++.|.|+||+|..... ...++..+|.+|+=.-.+... .+...+....+.... ...+| .-++.|++.-
T Consensus 83 ~~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD----~~eA~~t~~~v~~~~~~~~~~ip-~~Vl~Tr~~~ 152 (231)
T PF07015_consen 83 GFDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLD----ADEAAKTFKWVRRLEKAERRDIP-AAVLFTRVPA 152 (231)
T ss_pred CCCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHH----HHHHHHHHHHHHHHHHhhCCCCC-eeEEEecCCc
Confidence 4679999999975533 333445678655533222111 011122222222222 24578 5889999983
No 459
>COG1161 Predicted GTPases [General function prediction only]
Probab=75.42 E-value=2 Score=32.98 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=23.0
Q ss_pred HHHhhcCceeeeeeEEEEeCCeEEEEEeCCCC
Q psy10355 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGH 40 (156)
Q Consensus 9 ~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~ 40 (156)
...+.+|+|.+.+....... +.++||||.
T Consensus 159 ~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 159 KTSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred eeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 34456799999888887744 999999996
No 460
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=74.07 E-value=3 Score=30.71 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=18.1
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcCh
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSF 43 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~ 43 (156)
+.+|.......+ .+ -.++||||...+
T Consensus 159 ~hTT~~~~l~~l--~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 159 KHTTTHVELFHF--HG--GLIADTPGFNEF 184 (245)
T ss_pred CCcCCceEEEEc--CC--cEEEeCCCcccc
Confidence 347777776666 22 389999998654
No 461
>KOG1707|consensus
Probab=72.02 E-value=4.7 Score=33.54 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=35.7
Q ss_pred hcCCEEEEEEeCCCCccccccCCCcchHHHHH-HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCC
Q psy10355 52 AQADLAVLVISARKGEFETGFDRGGQTREHAM-LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFN 129 (156)
Q Consensus 52 ~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (156)
..||++.+++|++... +|.. ...... .....++| .+.|..|+|+-... ++..-...+++.+++..
T Consensus 494 ~~cDv~~~~YDsS~p~---sf~~---~a~v~~~~~~~~~~P-c~~va~K~dlDe~~------Q~~~iqpde~~~~~~i~ 559 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPR---SFEY---LAEVYNKYFDLYKIP-CLMVATKADLDEVP------QRYSIQPDEFCRQLGLP 559 (625)
T ss_pred ceeeeEEEecccCCch---HHHH---HHHHHHHhhhccCCc-eEEEeeccccchhh------hccCCChHHHHHhcCCC
Confidence 5689999999997532 1110 111111 11124678 89999999975321 11111125566777653
No 462
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=71.76 E-value=16 Score=27.08 Aligned_cols=38 Identities=18% Similarity=0.110 Sum_probs=24.2
Q ss_pred CCeEEEEEeCCCCcChHH-HHHhhhhcCCEEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVP-NMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~-~~~~~~~~~d~~ilvvD~~~ 65 (156)
+++.+.++||||...... ....++..+|.+++++.+..
T Consensus 115 ~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~ 153 (273)
T PRK13232 115 DDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGEL 153 (273)
T ss_pred ccCCEEEEecCCCeeECCEeccccccccceEEEecCchH
Confidence 568899999998642111 11122346899888887643
No 463
>PRK13796 GTPase YqeH; Provisional
Probab=71.57 E-value=2.8 Score=32.78 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=22.0
Q ss_pred HHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCc
Q psy10355 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHK 41 (156)
Q Consensus 9 ~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~ 41 (156)
...+-+|+|.+.....+.. ...++||||..
T Consensus 192 ~~s~~pGTT~~~~~~~l~~---~~~l~DTPGi~ 221 (365)
T PRK13796 192 TTSRFPGTTLDKIEIPLDD---GSFLYDTPGII 221 (365)
T ss_pred EecCCCCccceeEEEEcCC---CcEEEECCCcc
Confidence 3456789999887766542 25899999984
No 464
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=71.47 E-value=3.9 Score=31.93 Aligned_cols=56 Identities=9% Similarity=0.058 Sum_probs=33.3
Q ss_pred HHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHH-------HHhh---hhcCCEEEEEEeCCCCc
Q psy10355 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPN-------MIGG---TAQADLAVLVISARKGE 67 (156)
Q Consensus 9 ~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~-------~~~~---~~~~d~~ilvvD~~~~~ 67 (156)
.....+|+|.+.....+ +..+.++||||....... .... .+......+.++.....
T Consensus 186 ~~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~ 251 (360)
T TIGR03597 186 TTSPFPGTTLDLIEIPL---DDGHSLYDTPGIINSHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTL 251 (360)
T ss_pred eecCCCCeEeeEEEEEe---CCCCEEEECCCCCChhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEE
Confidence 34566888988775554 234789999998543211 0111 13356777777776544
No 465
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=70.48 E-value=7.3 Score=29.08 Aligned_cols=15 Identities=20% Similarity=0.188 Sum_probs=12.5
Q ss_pred cCCCcEEEEEeCCCCC
Q psy10355 88 AGVKHLVVLINKMDDP 103 (156)
Q Consensus 88 ~~~~~~ivv~NK~Dl~ 103 (156)
..+| +-+++||+|+.
T Consensus 68 ~~~P-VYvv~Tk~D~l 82 (266)
T PF14331_consen 68 VRLP-VYVVFTKCDLL 82 (266)
T ss_pred CCCC-eEeeeECCCcc
Confidence 3578 89999999975
No 466
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=70.24 E-value=27 Score=26.07 Aligned_cols=69 Identities=17% Similarity=0.076 Sum_probs=42.5
Q ss_pred eCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 27 TDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 27 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
|..+.+.|+|||-.---.. .......+|++|+|.....-. .......+..+...+.+-+=++.|+.+..
T Consensus 164 ~~~~D~vIID~PP~~g~~d-~~i~~~~~~g~viVt~p~~~~-------~~~v~ka~~~~~~~~~~vlGvv~Nm~~~~ 232 (265)
T COG0489 164 WGEYDYVIIDTPPGTGDAD-ATVLQRIPDGVVIVTTPGKTA-------LEDVKKAIDMLEKAGIPVLGVVENMSYFI 232 (265)
T ss_pred ccCCCEEEEeCCCCchHHH-HHHHhccCCeEEEEeCCccch-------HHHHHHHHHHHHhcCCceEEEEecCccCc
Confidence 4458999999996532221 122223456888888765432 13334456667777877556799988854
No 467
>KOG3859|consensus
Probab=70.03 E-value=21 Score=27.35 Aligned_cols=86 Identities=19% Similarity=0.207 Sum_probs=46.4
Q ss_pred eEEEEEeCCCCcC-------------h--------------HHHHHhhhhc--CCEEEEEEeCCCCccccccCCCcchHH
Q psy10355 30 KHFTILDAPGHKS-------------F--------------VPNMIGGTAQ--ADLAVLVISARKGEFETGFDRGGQTRE 80 (156)
Q Consensus 30 ~~~~iiDtpG~~~-------------~--------------~~~~~~~~~~--~d~~ilvvD~~~~~~~~~~~~~~~~~~ 80 (156)
.+++++||.|+-+ | ++.....+.. ..++++.+.++.... ..-+.-
T Consensus 95 lKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~L------KslDLv 168 (406)
T KOG3859|consen 95 LKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSL------KSLDLV 168 (406)
T ss_pred EEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcch------hHHHHH
Confidence 4699999999732 1 1223333333 357777777764321 111122
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcC
Q psy10355 81 HAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127 (156)
Q Consensus 81 ~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (156)
.+..+. .++. +|-++-|.|.+ ....+...+.++..-+...|
T Consensus 169 tmk~Ld-skVN-IIPvIAKaDti----sK~eL~~FK~kimsEL~sng 209 (406)
T KOG3859|consen 169 TMKKLD-SKVN-IIPVIAKADTI----SKEELKRFKIKIMSELVSNG 209 (406)
T ss_pred HHHHHh-hhhh-hHHHHHHhhhh----hHHHHHHHHHHHHHHHHhcC
Confidence 222222 3455 67789999965 33445666666655555444
No 468
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=69.73 E-value=19 Score=26.31 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=24.6
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISA 63 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~ 63 (156)
+++.+.++|||+.. ...+..++.-+|.++.-+-+
T Consensus 118 ~~yD~iiID~pp~l--~~l~~nal~asd~vlIP~~~ 151 (259)
T COG1192 118 DDYDYIIIDTPPSL--GVLTLNALAAADHVLIPVQP 151 (259)
T ss_pred cCCCEEEECCCCch--hHHHHHHHHHcCeeEEecCc
Confidence 47889999999986 45566777778855554433
No 469
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=69.55 E-value=13 Score=28.26 Aligned_cols=70 Identities=14% Similarity=0.114 Sum_probs=37.6
Q ss_pred CeEEEEEeCCCCcCh-HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC--CCcEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSF-VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG--VKHLVVLINKMDD 102 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~-~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ivv~NK~Dl 102 (156)
.+.+.++||+|-..- ......+...+|.+++++.+.... +....+....+..+...+ ++.+-+++|+.+.
T Consensus 122 ~yD~IliD~~~~~~~~g~~~~~a~~~Ad~viVvt~~e~~s----l~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~ 194 (296)
T TIGR02016 122 DFDFVLMDFLGDVVCGGFATPLARSLAEEVIVIGSNDRQS----LYVANNICNAVEYFRKLGGRVGLLGLVVNRDDG 194 (296)
T ss_pred cCCEEEEecCCCccccccccchhhhhCCeEEEEecchHHH----HHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCC
Confidence 688999998874210 000112234589888888764221 000122333344444443 4446689999984
No 470
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=68.50 E-value=9 Score=30.14 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=29.5
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..| ++.++||.|....+. ....+.+..+.+.. +.+++++||.--.-+..|.
T Consensus 206 ~KP-~lyvaN~~e~~~~~~-----n~~~~~i~~~~~~~------~~~vV~~sA~~E~eL~~l~ 256 (372)
T COG0012 206 AKP-MLYVANVSEDDLANL-----NEYVKRLKELAAKE------NAEVVPVSAAIELELRELA 256 (372)
T ss_pred cCC-eEEEEECCcccccch-----hHHHHHHHHHhhhc------CCcEEEeeHHHHHHHHhCc
Confidence 456 899999999753322 11122233333322 4588999998655444443
No 471
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=68.10 E-value=24 Score=21.38 Aligned_cols=61 Identities=16% Similarity=0.243 Sum_probs=32.3
Q ss_pred EEEEEeCC-CCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 31 HFTILDAP-GHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 31 ~~~iiDtp-G~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
.+.++|+| |.-+-.-.....+. .+++|+|.-+..-. .......+..+++.++| ++-++--|
T Consensus 2 D~LiiD~PPGTgD~~l~~~~~~~-~~g~ivVTTPq~la-------~~dv~r~~~~~~~~~vp-ilGvVENM 63 (81)
T PF10609_consen 2 DYLIIDLPPGTGDEHLTLMQYLP-IDGAIVVTTPQELA-------LADVRRAIDMFRKLNVP-ILGVVENM 63 (81)
T ss_dssp CEEEEE--SCSSSHHHHHHHHH---SEEEEEE-CCC---------HHHHHHHHHHHHCTT-E-EEEEEECT
T ss_pred CEEEEeCCCCCCcHHHHHHHhCC-CCeEEEEeCCHHHH-------HHHHHHHHHHHHhcCCC-cEEEEECC
Confidence 36789997 44454444444444 68888888765432 23445666777778888 55444333
No 472
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=67.04 E-value=8.3 Score=28.59 Aligned_cols=38 Identities=21% Similarity=0.114 Sum_probs=24.5
Q ss_pred CCeEEEEEeCCCCcChHHH-HHhhhhcCCEEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPN-MIGGTAQADLAVLVISARK 65 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~-~~~~~~~~d~~ilvvD~~~ 65 (156)
+.+.+.++||||....... ...++..+|.+|+++.+..
T Consensus 114 ~~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~ 152 (275)
T TIGR01287 114 DDLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM 152 (275)
T ss_pred ccCCEEEEeccCcceecceeeccccccccEEEEEecchH
Confidence 3578999999986432111 1122346799999997754
No 473
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=66.20 E-value=27 Score=23.01 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=39.3
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNP 147 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi 147 (156)
+...|..-++++.-|++..--.......+.-.+.+++.++++|..++ .+.++.+||..++.+
T Consensus 49 Al~~GaDGV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~e-Rv~~~wiSa~E~ekf 110 (132)
T COG1908 49 ALRKGADGVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPE-RVRVLWISAAEGEKF 110 (132)
T ss_pred HHHcCCCeEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcc-eEEEEEEehhhHHHH
Confidence 33456665777788887432111222334444556777888888764 678899999888754
No 474
>KOG4146|consensus
Probab=66.07 E-value=14 Score=22.98 Aligned_cols=10 Identities=60% Similarity=0.847 Sum_probs=8.9
Q ss_pred EEEEEeCCCC
Q psy10355 93 LVVLINKMDD 102 (156)
Q Consensus 93 ~ivv~NK~Dl 102 (156)
+|+++|++|-
T Consensus 67 ii~lINd~DW 76 (101)
T KOG4146|consen 67 IIVLINDMDW 76 (101)
T ss_pred EEEEEeccch
Confidence 7899999994
No 475
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=65.05 E-value=54 Score=24.28 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=26.3
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISA 63 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~ 63 (156)
..+.++++|||-.. ...+..++..+|.++.|+-+
T Consensus 116 ~~~~~iliD~P~g~--~~~~~~al~~aD~vL~V~~~ 149 (243)
T PF06564_consen 116 GPYDWILIDTPPGP--SPYTRQALAAADLVLVVVNP 149 (243)
T ss_pred CCCCEEEEeCCCCC--cHHHHHHHHhCCeEEEEeCC
Confidence 45679999999753 34566777889999999866
No 476
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=64.23 E-value=7.4 Score=29.02 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=42.6
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCC----CCc---cccccCC--CcchHHHHHHHHHc-------CCCc
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISAR----KGE---FETGFDR--GGQTREHAMLAKTA-------GVKH 92 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~----~~~---~~~~~~~--~~~~~~~~~~~~~~-------~~~~ 92 (156)
+..|.+|||||..+.... .+...||.++-=+..+ +-+ -..++.. .+-+.+.+-.++.. .+.
T Consensus 98 ~~DfLVID~PGtd~~lsr--~Ahs~ADtLiTPlNdSfvDfDllg~vD~~~~~v~~ps~Yse~vw~~r~~ra~~~~~~id- 174 (261)
T PF09140_consen 98 DLDFLVIDTPGTDDRLSR--VAHSMADTLITPLNDSFVDFDLLGQVDPETFKVIGPSVYSEMVWEARKLRAQADGKPID- 174 (261)
T ss_dssp H-SEEEEEE-SSS-HHHH--HHHHT-SEEEEEEESSHHHHCCCEEE-TTTS-EEEE-HHHHHHHHHHHCCCCTSSS--E-
T ss_pred CCCEEEEeCCCCCcHHHH--HHHHhCCEEEccCchhHHhHHHHhccCcccceecCccHHHHHHHHHHHHHHHcCCCCcc-
Confidence 467999999998776543 3445677555322211 000 0000000 01122332223321 133
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFN 129 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (156)
-|++-|..-... ......+.+.+....+..||.
T Consensus 175 Wvv~rnRl~~~~----a~Nk~~~~~~l~~ls~rigfr 207 (261)
T PF09140_consen 175 WVVLRNRLSHLD----ARNKRRVEEALEELSKRIGFR 207 (261)
T ss_dssp EEEEEESBTT------HHHHHHHHHHHHHHHHHHT-E
T ss_pred EEEEecCccHHH----hHHHHHHHHHHHHHHHhhCce
Confidence 588999887542 233455566677777788773
No 477
>PRK12288 GTPase RsgA; Reviewed
Probab=63.84 E-value=8 Score=30.13 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=15.3
Q ss_pred ceeeeeeEEEEeCCeEEEEEeCCCCcCh
Q psy10355 16 KTVEVGRAYFETDRKHFTILDAPGHKSF 43 (156)
Q Consensus 16 ~t~~~~~~~~~~~~~~~~iiDtpG~~~~ 43 (156)
+|.....+.+..+ ..++||||+..|
T Consensus 246 TT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 246 TTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred ceeeEEEEEecCC---CEEEECCCCCcc
Confidence 4445444444322 359999999765
No 478
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.27 E-value=15 Score=33.37 Aligned_cols=77 Identities=12% Similarity=0.041 Sum_probs=42.2
Q ss_pred eEEEEe-CCeEEEEEeCCCCcC--------hHHHHH---------hhhhcCCEEEEEEeCCCCccccccCCCcchH-HHH
Q psy10355 22 RAYFET-DRKHFTILDAPGHKS--------FVPNMI---------GGTAQADLAVLVISARKGEFETGFDRGGQTR-EHA 82 (156)
Q Consensus 22 ~~~~~~-~~~~~~iiDtpG~~~--------~~~~~~---------~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~-~~~ 82 (156)
+..|+| -+..-.+|||+|-.. -...|. ...+-.+++|+.+|..+-.. . ..... .+.
T Consensus 165 T~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~-~----~~~~~~~~~ 239 (1188)
T COG3523 165 TRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLT-A----DPAEREALA 239 (1188)
T ss_pred CcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcC-C----CHHHHHHHH
Confidence 344443 345678999999421 112222 22345799999999865331 0 01111 111
Q ss_pred H-------HHH---HcCCCcEEEEEeCCCCCC
Q psy10355 83 M-------LAK---TAGVKHLVVLINKMDDPT 104 (156)
Q Consensus 83 ~-------~~~---~~~~~~~ivv~NK~Dl~~ 104 (156)
. .+. ....| +.+++||+|+..
T Consensus 240 ~~LR~RL~El~~tL~~~~P-VYl~lTk~Dll~ 270 (1188)
T COG3523 240 RTLRARLQELRETLHARLP-VYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHHHHHHhhccCCc-eEEEEecccccc
Confidence 1 111 13567 899999999863
No 479
>KOG2743|consensus
Probab=62.59 E-value=72 Score=24.83 Aligned_cols=85 Identities=18% Similarity=0.108 Sum_probs=44.4
Q ss_pred eEEEEEeCCCCcChHHHHHhhh--------hcCCEEEEEEeCCCCccccc-cCCCcchHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGT--------AQADLAVLVISARKGEFETG-FDRGGQTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~--------~~~d~~ilvvD~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
...+++.|.|...-.+....+. -..|+++=|+|+........ .....-+.+...++... . -++.||.
T Consensus 146 fD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~A--D--~II~NKt 221 (391)
T KOG2743|consen 146 FDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIALA--D--RIIMNKT 221 (391)
T ss_pred cceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhhh--h--eeeeccc
Confidence 5678899999865433222221 13589999999964321000 00011122222222222 2 3479999
Q ss_pred CCCCcchhHHHHHHHHHHHHHH
Q psy10355 101 DDPTVMWSEARYNECKDKILPY 122 (156)
Q Consensus 101 Dl~~~~~~~~~~~~~~~~~~~~ 122 (156)
|+.. ++....+++.+..+
T Consensus 222 Dli~----~e~~~~l~q~I~~I 239 (391)
T KOG2743|consen 222 DLVS----EEEVKKLRQRIRSI 239 (391)
T ss_pred cccC----HHHHHHHHHHHHHh
Confidence 9884 34566666665543
No 480
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=61.93 E-value=2.7 Score=29.00 Aligned_cols=13 Identities=46% Similarity=0.759 Sum_probs=10.2
Q ss_pred EEEEEeCCCCcCh
Q psy10355 31 HFTILDAPGHKSF 43 (156)
Q Consensus 31 ~~~iiDtpG~~~~ 43 (156)
.-.++||||+.++
T Consensus 88 g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 88 GGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEECSHHHHT-
T ss_pred CcEEEECCCCCcc
Confidence 5689999998765
No 481
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=61.07 E-value=12 Score=27.74 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=22.5
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhh------cCCEEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTA------QADLAVLVISARK 65 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~------~~d~~ilvvD~~~ 65 (156)
+.+.+.++||+|... ..++. .||.+|+++.+..
T Consensus 117 ~~yD~iliD~~~~~~-----~~al~~~~~~~aad~viIp~~p~~ 155 (275)
T PRK13233 117 DDLDFVFFDVLGDVV-----CGGFAMPIRDGKAQEVYIVASGEM 155 (275)
T ss_pred CCCCEEEEecCCcee-----eccccccchhccCceEEEeccccH
Confidence 457899999988432 22222 6898999887743
No 482
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=60.72 E-value=8.4 Score=29.04 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=16.3
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcCh
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSF 43 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~ 43 (156)
++|.......+... ..++||||..++
T Consensus 201 ~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 201 HTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred cccceEEEEEcCCC---CEEEECCCCCcc
Confidence 35555554444322 379999999664
No 483
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=59.62 E-value=42 Score=23.49 Aligned_cols=50 Identities=18% Similarity=0.035 Sum_probs=36.7
Q ss_pred HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 44 VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 44 ~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
...-...+.+||++|.++|..+.. ..+.+...+-++...|+| +...+|.+
T Consensus 59 ~e~d~~~i~~aD~vla~ld~fr~~------~DsGTa~E~GYa~AlgKP--v~~~~~d~ 108 (172)
T COG3613 59 YEADIKLIDQADIVLANLDPFRPD------PDSGTAFELGYAIALGKP--VYAYRKDA 108 (172)
T ss_pred HHHHHHHHhhcCEEEEecCCCCCC------CCCcchHHHHHHHHcCCc--eEEEeecc
Confidence 344566678899999999987622 145677777888889999 55777766
No 484
>KOG0781|consensus
Probab=58.86 E-value=34 Score=28.19 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=25.6
Q ss_pred CCeEEEEEeCCCCcChHH----HHHhhh--hcCCEEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVP----NMIGGT--AQADLAVLVISARKG 66 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~----~~~~~~--~~~d~~ilvvD~~~~ 66 (156)
++..+.++||+|-..... .....+ ...|.+++|--+-.|
T Consensus 465 ~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg 509 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVG 509 (587)
T ss_pred cCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhC
Confidence 678899999999654322 222222 457899998766554
No 485
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=58.33 E-value=11 Score=25.01 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=14.8
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISA 63 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~ 63 (156)
+.++++|+|...... .....+..+|.+++|+.+
T Consensus 118 yd~IivD~~~~~~~~-~~~~~l~~~D~ii~v~~~ 150 (157)
T PF13614_consen 118 YDYIIVDLPSSLSNP-DTQAVLELADKIILVVRP 150 (157)
T ss_dssp SSEEEEEEESTTTHT-HHHHHHTTHSEEEEEEET
T ss_pred CCEEEEECcCCccHH-HHHHHHHHCCEEEEEECC
Confidence 345555555543321 112244555555555544
No 486
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=57.33 E-value=43 Score=26.44 Aligned_cols=47 Identities=11% Similarity=0.060 Sum_probs=26.4
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNP 147 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi 147 (156)
..| +++++|+.|..-.. .. ...+++..++... +.+++++||.--.-+
T Consensus 199 ~KP-~i~v~N~~e~~~~~-~~----~~~~~i~~~~~~~------~~~~i~~sa~~E~el 245 (364)
T PRK09601 199 AKP-VLYVANVDEDDLAD-GN----PYVKKVREIAAKE------GAEVVVICAKIEAEI 245 (364)
T ss_pred cCC-eEEEEECCcccccc-cc----HHHHHHHHHHHHc------CCeEEEEEHHHHHHH
Confidence 356 89999999942111 11 1223344444333 357899999754433
No 487
>PRK12289 GTPase RsgA; Reviewed
Probab=56.71 E-value=8.6 Score=30.04 Aligned_cols=26 Identities=19% Similarity=0.078 Sum_probs=15.3
Q ss_pred ceeeeeeEEEEeCCeEEEEEeCCCCcChH
Q psy10355 16 KTVEVGRAYFETDRKHFTILDAPGHKSFV 44 (156)
Q Consensus 16 ~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 44 (156)
+|.......+. +. ..++||||+..+.
T Consensus 213 TT~~~~l~~l~--~g-~~liDTPG~~~~~ 238 (352)
T PRK12289 213 TTRHVELFELP--NG-GLLADTPGFNQPD 238 (352)
T ss_pred cCceeEEEECC--CC-cEEEeCCCccccc
Confidence 45555444332 22 2799999986543
No 488
>PRK13695 putative NTPase; Provisional
Probab=52.63 E-value=40 Score=23.03 Aligned_cols=43 Identities=7% Similarity=0.096 Sum_probs=27.0
Q ss_pred hhhhcCCEEEEEEe---CCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 49 GGTAQADLAVLVIS---ARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 49 ~~~~~~d~~ilvvD---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
..+..+++ +++| +.+.. .....+.+..+...+.+ ++++.||..
T Consensus 92 ~~l~~~~~--lllDE~~~~e~~-------~~~~~~~l~~~~~~~~~-~i~v~h~~~ 137 (174)
T PRK13695 92 RALEEADV--IIIDEIGKMELK-------SPKFVKAVEEVLDSEKP-VIATLHRRS 137 (174)
T ss_pred hccCCCCE--EEEECCCcchhh-------hHHHHHHHHHHHhCCCe-EEEEECchh
Confidence 34455665 7888 33332 24455666666667777 899999854
No 489
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=52.60 E-value=11 Score=27.84 Aligned_cols=18 Identities=11% Similarity=-0.164 Sum_probs=15.7
Q ss_pred CCeEEEeecccCCCCccC
Q psy10355 133 DLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 133 ~~~~i~~Sa~~g~gi~~l 150 (156)
-.|++..||+++.|++.|
T Consensus 240 ~~pv~~gSa~~~~G~~~l 257 (268)
T cd04170 240 LVPVLCGSALTNIGVREL 257 (268)
T ss_pred EEEEEEeeCCCCcCHHHH
Confidence 468999999999999865
No 490
>KOG1980|consensus
Probab=50.32 E-value=49 Score=28.15 Aligned_cols=52 Identities=17% Similarity=0.302 Sum_probs=36.4
Q ss_pred HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcch-HHHHHHHHHcCCCcEEEEEeCCCCCCc
Q psy10355 44 VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQT-REHAMLAKTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 44 ~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ivv~NK~Dl~~~ 105 (156)
.-..+.+++.+|.++|+..+.... .++ +.+++.+...|+|.+|.++ .||...
T Consensus 132 ~~~~lD~~kv~D~~~f~~s~~~~~--------~e~ge~i~~~~~~qGi~s~v~~v--~~L~sv 184 (754)
T KOG1980|consen 132 FLNILDAAKVSDFVVFLLSAVEED--------DEFGEQIIRALEAQGIPSYVSVV--SDLSSV 184 (754)
T ss_pred hhhhhhhhhhcceeeeecchhhhh--------hHHHHHHHHHHhhcCCccceeee--cccchh
Confidence 345778889999999999987543 344 4466777788999756555 465443
No 491
>PTZ00258 GTP-binding protein; Provisional
Probab=48.52 E-value=60 Score=25.86 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=26.6
Q ss_pred CCCcEEEEEeCC--CCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCC
Q psy10355 89 GVKHLVVLINKM--DDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNP 147 (156)
Q Consensus 89 ~~~~~ivv~NK~--Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi 147 (156)
..| +++++||. |+... .....+ ++...+...+ +.+++++||+...-+
T Consensus 220 ~KP-~iyv~N~~E~D~~~~--~~~~~~----~l~~~~~~~~-----~~~~v~~sa~~E~el 268 (390)
T PTZ00258 220 AKP-MIYLVNMSEKDFIRQ--KNKWLA----KIKEWVGEKG-----GGPIIPYSAEFEEEL 268 (390)
T ss_pred cCC-EEEEEECchhhhccc--chHHHH----HHHHHHHhcC-----CCeEEEeeHHHHHHH
Confidence 356 89999999 75211 111223 3443333321 358999999866533
No 492
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=48.36 E-value=12 Score=27.78 Aligned_cols=38 Identities=18% Similarity=0.003 Sum_probs=24.9
Q ss_pred CCeEEEEEeCCCCcChHHH-HHhhhhcCCEEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPN-MIGGTAQADLAVLVISARK 65 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~-~~~~~~~~d~~ilvvD~~~ 65 (156)
.++.+.++||||....... ...++.-+|.+|+++.++.
T Consensus 115 ~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~ 153 (279)
T PRK13230 115 LGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDP 153 (279)
T ss_pred cCCCEEEEecCCccccCCccccccccccceEEEeccchH
Confidence 3688999999985322211 2223445899999998754
No 493
>KOG0446|consensus
Probab=47.33 E-value=3.3 Score=35.13 Aligned_cols=35 Identities=14% Similarity=0.290 Sum_probs=25.5
Q ss_pred eEEEEEeCCCCcC-------------hHHHHHhhhhcCCEEEEEEeCC
Q psy10355 30 KHFTILDAPGHKS-------------FVPNMIGGTAQADLAVLVISAR 64 (156)
Q Consensus 30 ~~~~iiDtpG~~~-------------~~~~~~~~~~~~d~~ilvvD~~ 64 (156)
-.++++|+||..+ ...+...++..-+++|+.+.+.
T Consensus 132 ~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~a 179 (657)
T KOG0446|consen 132 ANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPA 179 (657)
T ss_pred chhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccch
Confidence 5699999999743 3445667777778888877653
No 494
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=47.04 E-value=44 Score=20.26 Aligned_cols=48 Identities=8% Similarity=0.122 Sum_probs=29.2
Q ss_pred HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHH-HHHHHHHcCCCcEEEEEeCCCC
Q psy10355 45 PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTRE-HAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 45 ~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
+.+..+++.-.+-++++..+-+ +.... +.......++| ++.+.+|.+|
T Consensus 14 ~~vlkaIk~gkakLViiA~Da~---------~~~~k~i~~~c~~~~Vp-v~~~~t~~eL 62 (82)
T PRK13601 14 KQTLKAITNCNVLQVYIAKDAE---------EHVTKKIKELCEEKSIK-IVYIDTMKEL 62 (82)
T ss_pred HHHHHHHHcCCeeEEEEeCCCC---------HHHHHHHHHHHHhCCCC-EEEeCCHHHH
Confidence 4577777766666666654332 23444 44555667899 7777776664
No 495
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=46.43 E-value=1.2e+02 Score=22.52 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=34.4
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhh--hcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGT--AQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
.++.+.+..|.+..+.. .....+ +++|++|+. .. . .. ...+..+...++| +|++-.-.+.
T Consensus 30 ~Gy~l~l~~t~~~~~~e-~~i~~l~~~~vDGiI~~-s~-~----------~~-~~~l~~~~~~~iP-vV~~~~~~~~ 91 (279)
T PF00532_consen 30 HGYQLLLCNTGDDEEKE-EYIELLLQRRVDGIILA-SS-E----------ND-DEELRRLIKSGIP-VVLIDRYIDN 91 (279)
T ss_dssp TTCEEEEEEETTTHHHH-HHHHHHHHTTSSEEEEE-SS-S----------CT-CHHHHHHHHTTSE-EEEESS-SCT
T ss_pred cCCEEEEecCCCchHHH-HHHHHHHhcCCCEEEEe-cc-c----------CC-hHHHHHHHHcCCC-EEEEEeccCC
Confidence 56788888888876554 333333 568998887 22 2 11 2233334444888 6655555453
No 496
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=44.58 E-value=1.1e+02 Score=21.67 Aligned_cols=79 Identities=23% Similarity=0.212 Sum_probs=42.5
Q ss_pred HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEE--EEeCCCCCCcchhHHHHHHHHHHHHH
Q psy10355 44 VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVV--LINKMDDPTVMWSEARYNECKDKILP 121 (156)
Q Consensus 44 ~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv--v~NK~Dl~~~~~~~~~~~~~~~~~~~ 121 (156)
......+++++|++++++....... .......+..+...|++++|. +.+..+...........-..+..+..
T Consensus 55 ~~~l~~al~g~d~v~~~~~~~~~~~------~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~ 128 (233)
T PF05368_consen 55 PESLVAALKGVDAVFSVTPPSHPSE------LEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEE 128 (233)
T ss_dssp HHHHHHHHTTCSEEEEESSCSCCCH------HHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCceEEeecCcchhhh------hhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhhhhhhh
Confidence 4567888999999998887642210 134455667777889986543 22222211111111112223455667
Q ss_pred HHHHcCC
Q psy10355 122 YLKKLGF 128 (156)
Q Consensus 122 ~~~~~~~ 128 (156)
.+++.+.
T Consensus 129 ~l~~~~i 135 (233)
T PF05368_consen 129 YLRESGI 135 (233)
T ss_dssp HHHHCTS
T ss_pred hhhhccc
Confidence 7776654
No 497
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=44.16 E-value=36 Score=26.40 Aligned_cols=68 Identities=19% Similarity=0.147 Sum_probs=33.2
Q ss_pred CeEEEEEeCCCCcC---hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC--CCcEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKS---FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG--VKHLVVLINKMDD 102 (156)
Q Consensus 29 ~~~~~iiDtpG~~~---~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ivv~NK~Dl 102 (156)
+..+.++||+|-.. |...... .-+|.+++|....-.. +....+....+..+...+ .+.+-+|+||.|.
T Consensus 147 ~~DyVliD~~gdv~~ggf~l~i~~--~~ad~VIVVt~pe~~s----i~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~ 219 (329)
T cd02033 147 DFDYVLLDFLGDVVCGGFGLPIAR--DMAQKVIVVGSNDLQS----LYVANNVCNAVEYFRKLGGNVGVAGMVINKDDG 219 (329)
T ss_pred cCCEEEEecCCcceeccccchhhh--cCCceEEEeCCchHHH----HHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCC
Confidence 57899999988432 2211111 2356666665432110 000011222334444443 4435789999984
No 498
>PRK06683 hypothetical protein; Provisional
Probab=40.02 E-value=70 Score=19.28 Aligned_cols=50 Identities=8% Similarity=-0.048 Sum_probs=29.3
Q ss_pred HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 44 VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 44 ~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
.+.+..+++.-.+-++++-.+-+. .....+...+...++| ++.+-+|.+|
T Consensus 16 ~~~v~kaik~gkaklViiA~Da~~--------~~~~~i~~~~~~~~Vp-v~~~~t~~eL 65 (82)
T PRK06683 16 HKRTLEAIKNGIVKEVVIAEDADM--------RLTHVIIRTALQHNIP-ITKVESVRKL 65 (82)
T ss_pred HHHHHHHHHcCCeeEEEEECCCCH--------HHHHHHHHHHHhcCCC-EEEECCHHHH
Confidence 456777777666666666543322 2233345566677899 6766665553
No 499
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=39.62 E-value=45 Score=25.21 Aligned_cols=38 Identities=16% Similarity=0.097 Sum_probs=22.5
Q ss_pred CCeEEEEEeCCCCcChHHHHH-hhhhcCCEEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMI-GGTAQADLAVLVISARK 65 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~-~~~~~~d~~ilvvD~~~ 65 (156)
+++.+.++||+|......... -....+|.+|+++.+..
T Consensus 118 ~~yD~IlID~~~~~~~nal~~~~~~~aAD~vIIPv~pe~ 156 (295)
T PRK13234 118 DDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEM 156 (295)
T ss_pred ccCCEEEEEcCCCceECCCccccccccCceEEEecCccH
Confidence 467899999987421111100 00136899899887743
No 500
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=39.49 E-value=73 Score=19.14 Aligned_cols=49 Identities=12% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 45 PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 45 ~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
+.+..+++.-.+-++++..+.+. .....+...+...++| ++.+.+|.+|
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~--------~~~~~i~~~c~~~~Vp-~~~~~s~~eL 65 (82)
T PRK13602 17 KQTVKALKRGSVKEVVVAEDADP--------RLTEKVEALANEKGVP-VSKVDSMKKL 65 (82)
T ss_pred HHHHHHHHcCCeeEEEEECCCCH--------HHHHHHHHHHHHcCCC-EEEECCHHHH
Done!