Query psy10355
Match_columns 156
No_of_seqs 143 out of 1053
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 15:48:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j2k_7 ERF3, eukaryotic polype 100.0 5.5E-28 1.9E-32 189.3 16.9 148 5-152 70-217 (439)
2 1r5b_A Eukaryotic peptide chai 99.9 5.9E-26 2E-30 179.0 13.0 148 5-152 96-244 (467)
3 1jny_A EF-1-alpha, elongation 99.9 5.9E-25 2E-29 172.0 12.5 147 5-152 59-205 (435)
4 3p26_A Elongation factor 1 alp 99.9 2.4E-24 8.1E-29 170.5 15.4 145 5-152 86-230 (483)
5 1f60_A Elongation factor EEF1A 99.9 1E-24 3.4E-29 171.7 12.7 144 6-152 61-204 (458)
6 3izq_1 HBS1P, elongation facto 99.9 6.4E-24 2.2E-28 172.0 13.0 145 5-152 220-364 (611)
7 1zun_B Sulfate adenylate trans 99.9 5.3E-23 1.8E-27 160.9 15.0 138 5-152 79-216 (434)
8 3mca_A HBS1, elongation factor 99.9 1.7E-24 5.8E-29 174.9 3.9 145 4-151 229-374 (592)
9 3vqt_A RF-3, peptide chain rel 99.9 3E-23 1E-27 166.2 11.1 105 4-117 74-178 (548)
10 2c78_A Elongation factor TU-A; 99.9 2.5E-22 8.6E-27 155.8 11.4 131 5-146 50-180 (405)
11 1wb1_A Translation elongation 99.9 1.5E-22 5.2E-27 160.1 10.2 132 5-151 48-180 (482)
12 1d2e_A Elongation factor TU (E 99.9 3.3E-22 1.1E-26 154.8 10.6 131 5-146 41-171 (397)
13 3j25_A Tetracycline resistance 99.9 6.3E-23 2.2E-27 167.0 5.8 98 3-108 40-137 (638)
14 3avx_A Elongation factor TS, e 99.8 4E-21 1.4E-25 162.6 11.6 129 5-144 334-462 (1289)
15 3cb4_D GTP-binding protein LEP 99.8 9.8E-21 3.3E-25 152.8 12.4 129 4-151 40-173 (599)
16 1kk1_A EIF2gamma; initiation o 99.8 7.9E-21 2.7E-25 147.6 11.1 134 5-151 35-191 (410)
17 2ywe_A GTP-binding protein LEP 99.8 7.5E-21 2.6E-25 153.3 11.0 128 4-150 42-174 (600)
18 2elf_A Protein translation elo 99.8 2E-20 6.8E-25 143.6 10.2 123 13-151 43-171 (370)
19 1s0u_A EIF-2-gamma, translatio 99.8 2.7E-20 9.4E-25 144.5 10.8 134 5-151 33-189 (408)
20 4fn5_A EF-G 1, elongation fact 99.8 4.9E-20 1.7E-24 151.7 12.7 97 3-107 51-154 (709)
21 3tr5_A RF-3, peptide chain rel 99.8 6.4E-20 2.2E-24 146.4 12.7 94 5-106 57-150 (528)
22 2h5e_A Peptide chain release f 99.8 3.5E-18 1.2E-22 136.5 13.2 130 5-151 57-186 (529)
23 3sjy_A Translation initiation 99.8 3.5E-18 1.2E-22 132.5 11.3 109 30-151 75-183 (403)
24 1zo1_I IF2, translation initia 99.8 8.5E-20 2.9E-24 144.5 2.2 122 13-151 34-158 (501)
25 4dkx_A RAS-related protein RAB 99.8 2.8E-18 9.5E-23 122.8 9.6 127 8-150 38-166 (216)
26 2rdo_7 EF-G, elongation factor 99.7 2.2E-17 7.4E-22 135.8 13.9 94 4-105 49-149 (704)
27 3iby_A Ferrous iron transport 99.7 4.2E-18 1.4E-22 124.7 5.8 117 12-151 30-158 (256)
28 2lkc_A Translation initiation 99.7 6.4E-18 2.2E-22 116.1 6.2 122 13-151 38-162 (178)
29 1dar_A EF-G, elongation factor 99.7 8.1E-17 2.8E-21 132.2 13.8 94 4-105 51-144 (691)
30 2hxs_A RAB-26, RAS-related pro 99.7 4.1E-17 1.4E-21 112.0 10.1 127 10-151 33-164 (178)
31 3iev_A GTP-binding protein ERA 99.7 3.5E-17 1.2E-21 122.8 10.4 121 11-150 39-172 (308)
32 1wms_A RAB-9, RAB9, RAS-relate 99.7 9.9E-17 3.4E-21 110.0 11.7 124 11-150 35-164 (177)
33 4dcu_A GTP-binding protein ENG 99.7 2.1E-17 7.2E-22 129.9 9.2 126 11-151 224-360 (456)
34 2fu5_C RAS-related protein RAB 99.7 1.1E-17 3.7E-22 115.7 6.3 123 10-151 35-162 (183)
35 2dy1_A Elongation factor G; tr 99.7 1.4E-16 4.6E-21 130.4 13.6 91 5-103 49-139 (665)
36 2hup_A RAS-related protein RAB 99.7 4.1E-17 1.4E-21 114.9 9.1 125 11-151 57-184 (201)
37 3cph_A RAS-related protein SEC 99.7 2.3E-17 7.7E-22 116.6 7.8 123 12-151 49-173 (213)
38 3tkl_A RAS-related protein RAB 99.7 2.8E-17 9.7E-22 114.6 8.0 125 10-150 43-169 (196)
39 2xex_A Elongation factor G; GT 99.7 4.6E-17 1.6E-21 133.7 10.3 126 4-149 49-174 (693)
40 3izy_P Translation initiation 99.7 3.8E-19 1.3E-23 141.8 -2.0 125 10-151 31-159 (537)
41 2il1_A RAB12; G-protein, GDP, 99.7 3.6E-17 1.2E-21 114.3 8.2 127 10-151 53-181 (192)
42 4dhe_A Probable GTP-binding pr 99.7 5.5E-17 1.9E-21 115.5 9.3 129 12-151 60-202 (223)
43 1g7s_A Translation initiation 99.7 2.2E-17 7.6E-22 133.3 8.1 113 31-151 71-209 (594)
44 1g16_A RAS-related protein SEC 99.7 1.4E-17 4.9E-22 113.3 5.8 124 11-151 31-156 (170)
45 4bas_A ADP-ribosylation factor 99.7 9.6E-17 3.3E-21 112.1 10.1 118 17-151 50-180 (199)
46 2p5s_A RAS and EF-hand domain 99.7 4E-18 1.4E-22 119.7 3.1 114 28-151 75-188 (199)
47 1n0u_A EF-2, elongation factor 99.7 4.9E-17 1.7E-21 135.9 9.8 135 3-146 55-219 (842)
48 2ew1_A RAS-related protein RAB 99.7 5.7E-17 2E-21 114.5 8.6 123 13-151 56-180 (201)
49 2g6b_A RAS-related protein RAB 99.7 1E-16 3.6E-21 110.2 9.5 123 13-151 41-165 (180)
50 2bme_A RAB4A, RAS-related prot 99.7 6.5E-17 2.2E-21 111.9 8.3 125 11-151 38-164 (186)
51 2hjg_A GTP-binding protein ENG 99.7 3.9E-17 1.3E-21 127.7 7.7 126 11-151 204-340 (436)
52 1zbd_A Rabphilin-3A; G protein 99.7 7.5E-17 2.6E-21 113.3 8.2 104 29-151 56-162 (203)
53 2wji_A Ferrous iron transport 99.7 5.8E-17 2E-21 110.7 7.3 117 12-151 32-156 (165)
54 3a1s_A Iron(II) transport prot 99.7 6E-17 2.1E-21 118.7 7.7 116 13-151 35-158 (258)
55 1wf3_A GTP-binding protein; GT 99.7 9.3E-17 3.2E-21 120.1 8.8 116 13-150 38-163 (301)
56 1r8s_A ADP-ribosylation factor 99.7 2.3E-16 7.9E-21 106.9 10.1 119 17-151 31-153 (164)
57 2dyk_A GTP-binding protein; GT 99.7 1.4E-16 4.9E-21 107.5 8.8 117 11-151 30-153 (161)
58 3i8s_A Ferrous iron transport 99.7 2E-17 6.8E-22 122.2 4.6 117 12-151 32-160 (274)
59 1ek0_A Protein (GTP-binding pr 99.7 2.4E-17 8E-22 112.1 4.6 123 13-151 33-160 (170)
60 3t1o_A Gliding protein MGLA; G 99.7 6.8E-17 2.3E-21 112.5 6.9 106 28-151 72-183 (198)
61 2fg5_A RAB-22B, RAS-related pr 99.7 2.9E-17 9.9E-22 114.7 4.9 118 15-151 57-177 (192)
62 1z0f_A RAB14, member RAS oncog 99.7 7.5E-17 2.6E-21 110.6 6.9 107 29-151 63-169 (179)
63 1upt_A ARL1, ADP-ribosylation 99.7 3.9E-16 1.3E-20 106.3 10.4 119 17-151 38-160 (171)
64 2efe_B Small GTP-binding prote 99.7 7.8E-17 2.7E-21 110.9 6.9 120 13-151 42-166 (181)
65 1zj6_A ADP-ribosylation factor 99.7 2.6E-16 8.8E-21 109.3 9.6 119 17-151 47-169 (187)
66 2gf9_A RAS-related protein RAB 99.7 7.1E-17 2.4E-21 112.3 6.5 105 28-151 69-176 (189)
67 1mky_A Probable GTP-binding pr 99.7 3.6E-16 1.2E-20 122.3 11.2 118 11-151 30-157 (439)
68 3dz8_A RAS-related protein RAB 99.7 4.6E-17 1.6E-21 113.5 5.5 121 15-151 57-177 (191)
69 2y8e_A RAB-protein 6, GH09086P 99.7 1.5E-16 5.2E-21 109.0 8.0 124 12-151 43-168 (179)
70 1m2o_B GTP-binding protein SAR 99.7 9.9E-17 3.4E-21 112.0 7.2 120 17-151 54-183 (190)
71 1f6b_A SAR1; gtpases, N-termin 99.7 8.5E-17 2.9E-21 113.1 6.8 120 17-151 56-190 (198)
72 2h57_A ADP-ribosylation factor 99.7 4.3E-16 1.5E-20 108.4 9.9 121 15-151 52-178 (190)
73 1z0j_A RAB-22, RAS-related pro 99.7 6.9E-17 2.4E-21 109.9 5.7 121 15-151 40-160 (170)
74 2bcg_Y Protein YP2, GTP-bindin 99.7 9.8E-17 3.3E-21 113.0 6.5 124 12-151 37-162 (206)
75 1vg8_A RAS-related protein RAB 99.7 1.2E-16 4E-21 112.4 6.8 123 13-151 38-166 (207)
76 2h17_A ADP-ribosylation factor 99.7 2.9E-16 1E-20 108.5 8.7 117 19-151 54-174 (181)
77 1zd9_A ADP-ribosylation factor 99.7 4.9E-16 1.7E-20 108.1 9.8 119 17-151 54-176 (188)
78 1r2q_A RAS-related protein RAB 99.7 7.5E-17 2.6E-21 109.6 5.6 113 20-151 45-160 (170)
79 4dsu_A GTPase KRAS, isoform 2B 99.7 4.6E-16 1.6E-20 107.6 9.5 118 17-151 37-157 (189)
80 2a5j_A RAS-related protein RAB 99.7 1.5E-16 5.1E-21 110.9 7.1 122 14-151 52-175 (191)
81 1ky3_A GTP-binding protein YPT 99.7 2.3E-16 7.7E-21 108.4 7.7 126 12-151 37-169 (182)
82 1fzq_A ADP-ribosylation factor 99.7 3E-16 1E-20 108.7 8.3 114 22-151 52-169 (181)
83 3tw8_B RAS-related protein RAB 99.7 2.5E-16 8.5E-21 108.1 7.8 124 9-151 35-162 (181)
84 1svi_A GTP-binding protein YSX 99.7 5.3E-16 1.8E-20 108.1 9.1 120 12-151 54-186 (195)
85 2yc2_C IFT27, small RAB-relate 99.7 1.5E-16 5E-21 111.8 6.2 122 11-151 50-183 (208)
86 3k53_A Ferrous iron transport 99.7 1.4E-16 4.7E-21 117.4 6.3 117 12-151 32-157 (271)
87 1ksh_A ARF-like protein 2; sma 99.6 5E-16 1.7E-20 107.6 8.7 119 17-151 49-171 (186)
88 1x3s_A RAS-related protein RAB 99.6 2.5E-16 8.6E-21 109.5 7.3 116 15-150 47-168 (195)
89 2b6h_A ADP-ribosylation factor 99.6 5.9E-16 2E-20 108.2 9.1 119 17-151 60-182 (192)
90 1z08_A RAS-related protein RAB 99.6 1.3E-16 4.3E-21 108.7 5.4 123 13-151 36-160 (170)
91 3bc1_A RAS-related protein RAB 99.6 7.5E-16 2.6E-20 106.8 9.3 104 29-151 69-176 (195)
92 3pqc_A Probable GTP-binding pr 99.6 1.1E-15 3.6E-20 106.3 9.9 118 14-151 55-185 (195)
93 1z2a_A RAS-related protein RAB 99.6 4.3E-16 1.5E-20 105.7 7.6 121 14-151 36-158 (168)
94 3b1v_A Ferrous iron uptake tra 99.6 6.8E-17 2.3E-21 119.3 3.7 114 14-151 34-155 (272)
95 3clv_A RAB5 protein, putative; 99.6 9.2E-16 3.2E-20 107.0 9.3 102 30-151 93-195 (208)
96 3cpj_B GTP-binding protein YPT 99.6 1.1E-16 3.8E-21 114.4 4.6 124 12-151 42-167 (223)
97 2oil_A CATX-8, RAS-related pro 99.6 1.2E-16 4.1E-21 111.4 4.6 105 28-151 72-179 (193)
98 2gf0_A GTP-binding protein DI- 99.6 1E-15 3.4E-20 106.9 9.3 106 29-151 55-162 (199)
99 2x77_A ADP-ribosylation factor 99.6 4.2E-16 1.4E-20 108.3 7.2 119 17-151 53-175 (189)
100 2o52_A RAS-related protein RAB 99.6 1.8E-16 6.3E-21 111.4 5.2 125 11-151 53-179 (200)
101 3qq5_A Small GTP-binding prote 99.6 2.3E-16 7.8E-21 122.8 6.1 119 9-151 61-187 (423)
102 3r7w_A Gtpase1, GTP-binding pr 99.6 8E-16 2.7E-20 115.3 8.8 129 12-148 33-169 (307)
103 3con_A GTPase NRAS; structural 99.6 2.1E-15 7.2E-20 104.7 10.3 112 23-151 60-174 (190)
104 2fh5_B SR-beta, signal recogni 99.6 8.4E-16 2.9E-20 108.8 8.3 123 23-151 44-207 (214)
105 2ce2_X GTPase HRAS; signaling 99.6 1.4E-15 4.9E-20 102.6 9.0 111 24-151 43-156 (166)
106 2nzj_A GTP-binding protein REM 99.6 1.8E-15 6.1E-20 103.4 9.5 117 14-151 36-160 (175)
107 1z06_A RAS-related protein RAB 99.6 7.2E-16 2.5E-20 107.2 7.6 122 13-150 50-178 (189)
108 1moz_A ARL1, ADP-ribosylation 99.6 5.7E-16 1.9E-20 106.8 6.7 119 17-151 49-171 (183)
109 3llu_A RAS-related GTP-binding 99.6 1.8E-15 6E-20 106.0 9.2 131 13-150 49-187 (196)
110 1u8z_A RAS-related protein RAL 99.6 2.6E-15 8.9E-20 101.6 9.7 113 23-151 43-158 (168)
111 3gj0_A GTP-binding nuclear pro 99.6 4.3E-16 1.5E-20 111.0 6.0 120 13-151 47-166 (221)
112 2bov_A RAla, RAS-related prote 99.6 4.3E-15 1.5E-19 104.2 10.7 114 22-151 52-168 (206)
113 4djt_A GTP-binding nuclear pro 99.6 4.9E-16 1.7E-20 110.3 5.8 106 30-151 61-166 (218)
114 4gzl_A RAS-related C3 botulinu 99.6 8.5E-16 2.9E-20 108.4 6.8 124 16-151 62-196 (204)
115 1c1y_A RAS-related protein RAP 99.6 1.5E-15 5E-20 103.0 7.6 108 29-151 50-158 (167)
116 2wjg_A FEOB, ferrous iron tran 99.6 8.9E-16 3.1E-20 106.3 6.7 117 12-151 36-160 (188)
117 2atx_A Small GTP binding prote 99.6 3.4E-15 1.2E-19 104.1 9.6 116 24-151 58-184 (194)
118 2qu8_A Putative nucleolar GTP- 99.6 5.5E-15 1.9E-19 105.9 10.9 127 13-151 59-196 (228)
119 3q85_A GTP-binding protein REM 99.6 8E-16 2.7E-20 104.7 6.0 120 16-151 35-158 (169)
120 3o47_A ADP-ribosylation factor 99.6 2.1E-15 7.1E-20 114.0 8.5 119 17-151 196-318 (329)
121 2fn4_A P23, RAS-related protei 99.6 1.9E-15 6.4E-20 103.7 7.4 113 23-151 48-163 (181)
122 2erx_A GTP-binding protein DI- 99.6 2.7E-15 9.4E-20 102.0 8.1 106 30-151 51-158 (172)
123 3q72_A GTP-binding protein RAD 99.6 4E-15 1.4E-19 100.9 8.7 105 28-151 47-155 (166)
124 2a9k_A RAS-related protein RAL 99.6 5.3E-15 1.8E-19 101.9 9.4 114 22-151 56-172 (187)
125 1ega_A Protein (GTP-binding pr 99.6 2.6E-15 8.8E-20 112.3 8.3 118 13-150 39-165 (301)
126 1mh1_A RAC1; GTP-binding, GTPa 99.6 1.8E-15 6.2E-20 104.3 6.9 116 24-151 45-171 (186)
127 1kao_A RAP2A; GTP-binding prot 99.6 2.7E-15 9.3E-20 101.4 7.6 114 22-151 41-157 (167)
128 3cbq_A GTP-binding protein REM 99.6 4.1E-15 1.4E-19 104.3 8.7 122 14-151 54-179 (195)
129 2hjg_A GTP-binding protein ENG 99.6 3.8E-16 1.3E-20 122.2 3.5 117 11-151 32-156 (436)
130 3kkq_A RAS-related protein M-R 99.6 7E-15 2.4E-19 101.4 9.5 114 22-151 56-173 (183)
131 3gee_A MNME, tRNA modification 99.6 3.5E-15 1.2E-19 117.8 9.0 121 10-151 261-389 (476)
132 2gj8_A MNME, tRNA modification 99.6 1.7E-15 6E-20 104.1 6.2 112 13-151 35-157 (172)
133 1xzp_A Probable tRNA modificat 99.6 6.2E-15 2.1E-19 116.5 10.0 114 13-151 274-396 (482)
134 3l0i_B RAS-related protein RAB 99.6 1.6E-17 5.5E-22 116.6 -4.5 123 9-150 59-186 (199)
135 3t5g_A GTP-binding protein RHE 99.6 1.7E-15 5.9E-20 104.3 5.8 113 22-150 44-159 (181)
136 3reg_A RHO-like small GTPase; 99.6 4.5E-15 1.5E-19 103.5 7.9 114 24-151 63-179 (194)
137 2f7s_A C25KG, RAS-related prot 99.6 5.7E-15 2E-19 104.7 8.4 101 29-151 83-190 (217)
138 3lvq_E ARF-GAP with SH3 domain 99.6 6.8E-15 2.3E-19 116.6 9.6 118 16-151 352-475 (497)
139 2gco_A H9, RHO-related GTP-bin 99.6 2.5E-15 8.7E-20 105.6 6.4 116 25-151 66-191 (201)
140 2q3h_A RAS homolog gene family 99.6 5.2E-15 1.8E-19 103.6 7.6 123 19-151 55-186 (201)
141 3bwd_D RAC-like GTP-binding pr 99.6 8.8E-16 3E-20 105.7 3.5 112 28-151 54-172 (182)
142 2fv8_A H6, RHO-related GTP-bin 99.6 1.3E-14 4.5E-19 102.3 9.5 115 25-151 66-191 (207)
143 2j1l_A RHO-related GTP-binding 99.6 3.3E-15 1.1E-19 106.0 6.2 119 23-151 73-200 (214)
144 2iwr_A Centaurin gamma 1; ANK 99.6 6.4E-15 2.2E-19 101.2 7.4 110 24-151 46-160 (178)
145 2j0v_A RAC-like GTP-binding pr 99.6 2.8E-15 9.6E-20 105.9 5.6 116 24-151 49-171 (212)
146 2atv_A RERG, RAS-like estrogen 99.6 1.1E-14 3.8E-19 101.8 8.4 106 29-151 75-182 (196)
147 1mky_A Probable GTP-binding pr 99.6 1.4E-14 4.7E-19 113.4 9.4 124 13-151 211-346 (439)
148 3q3j_B RHO-related GTP-binding 99.6 2.1E-15 7.3E-20 107.2 4.2 113 28-150 73-193 (214)
149 3th5_A RAS-related C3 botulinu 99.3 3.8E-16 1.3E-20 109.9 0.0 115 29-153 77-198 (204)
150 3oes_A GTPase rhebl1; small GT 99.5 4.7E-15 1.6E-19 104.1 5.3 108 27-150 69-177 (201)
151 3ihw_A Centg3; RAS, centaurin, 99.5 1E-14 3.4E-19 101.3 6.8 108 23-151 58-171 (184)
152 3c5c_A RAS-like protein 12; GD 99.5 8.3E-15 2.8E-19 101.9 4.9 106 29-151 68-177 (187)
153 2wkq_A NPH1-1, RAS-related C3 99.5 2.4E-14 8.3E-19 107.3 7.2 124 16-151 187-321 (332)
154 4dcu_A GTP-binding protein ENG 99.5 4.5E-15 1.6E-19 116.6 3.3 117 10-150 51-175 (456)
155 1m7b_A RND3/RHOE small GTP-bin 99.5 8E-15 2.7E-19 101.5 3.3 110 29-151 54-174 (184)
156 2g3y_A GTP-binding protein GEM 99.5 3.2E-14 1.1E-18 101.3 6.4 114 22-151 77-194 (211)
157 3r7w_B Gtpase2, GTP-binding pr 99.5 1.3E-14 4.5E-19 109.2 4.2 128 14-149 31-163 (331)
158 3t5d_A Septin-7; GTP-binding p 99.5 3.2E-13 1.1E-17 99.5 11.2 120 13-151 46-195 (274)
159 1cip_A Protein (guanine nucleo 99.5 1.7E-14 5.7E-19 110.0 3.9 136 14-150 177-334 (353)
160 1nrj_B SR-beta, signal recogni 99.5 5.7E-14 2E-18 99.6 5.8 109 28-146 53-170 (218)
161 1gwn_A RHO-related GTP-binding 99.5 1.7E-14 5.8E-19 102.0 3.0 110 29-151 75-195 (205)
162 3geh_A MNME, tRNA modification 99.5 9.7E-14 3.3E-18 109.2 6.9 113 13-151 255-375 (462)
163 2xtp_A GTPase IMAP family memb 99.4 6.4E-14 2.2E-18 102.2 5.0 121 16-150 57-198 (260)
164 1zcb_A G alpha I/13; GTP-bindi 99.4 6.6E-14 2.3E-18 107.0 4.7 135 14-150 185-343 (362)
165 3ohm_A Guanine nucleotide-bind 99.4 9.8E-14 3.3E-18 104.6 5.0 135 14-149 151-307 (327)
166 2zej_A Dardarin, leucine-rich 99.4 3.6E-14 1.2E-18 98.3 2.4 114 28-151 54-169 (184)
167 2cxx_A Probable GTP-binding pr 99.4 4.4E-13 1.5E-17 92.6 7.7 128 10-151 28-175 (190)
168 2e87_A Hypothetical protein PH 99.4 2.1E-12 7.3E-17 98.5 11.9 119 14-151 198-327 (357)
169 2cjw_A GTP-binding protein GEM 99.4 2.2E-13 7.7E-18 95.1 5.9 118 18-151 42-163 (192)
170 1lnz_A SPO0B-associated GTP-bi 99.4 3E-13 1E-17 102.7 5.9 120 14-151 189-321 (342)
171 3dpu_A RAB family protein; roc 99.4 7.4E-13 2.5E-17 105.9 7.2 101 29-151 97-199 (535)
172 3lxw_A GTPase IMAP family memb 99.4 1.1E-12 3.7E-17 95.4 6.6 83 13-104 53-153 (247)
173 1azs_C GS-alpha; complex (lyas 99.3 1.3E-12 4.5E-17 100.9 7.0 88 14-103 201-297 (402)
174 1u0l_A Probable GTPase ENGC; p 99.3 9.5E-13 3.2E-17 98.3 5.9 102 30-151 63-164 (301)
175 4fid_A G protein alpha subunit 99.3 4.9E-13 1.7E-17 101.2 4.0 89 14-103 145-241 (340)
176 2qtf_A Protein HFLX, GTP-bindi 99.3 4.3E-12 1.5E-16 97.1 8.7 129 11-151 207-345 (364)
177 2aka_B Dynamin-1; fusion prote 99.3 4.3E-12 1.5E-16 94.0 8.2 121 14-151 108-244 (299)
178 2xtz_A Guanine nucleotide-bind 99.3 7.5E-13 2.6E-17 100.9 3.9 88 14-103 161-263 (354)
179 2f9l_A RAB11B, member RAS onco 99.3 8.3E-12 2.8E-16 87.3 7.4 123 13-151 35-159 (199)
180 3c5h_A Glucocorticoid receptor 99.3 1.2E-12 4.3E-17 95.4 3.3 84 53-151 162-246 (255)
181 3lxx_A GTPase IMAP family memb 99.3 2.7E-11 9.1E-16 87.3 9.6 115 13-142 61-191 (239)
182 3p32_A Probable GTPase RV1496/ 99.2 1.8E-11 6.1E-16 93.3 5.6 106 27-151 169-275 (355)
183 1jwy_B Dynamin A GTPase domain 99.2 5.4E-11 1.8E-15 88.8 7.0 83 15-104 115-212 (315)
184 2ged_A SR-beta, signal recogni 99.2 3E-11 1E-15 83.8 5.1 90 28-120 89-186 (193)
185 1wxq_A GTP-binding protein; st 99.2 5.5E-11 1.9E-15 91.9 6.8 37 30-66 71-114 (397)
186 2qag_A Septin-2, protein NEDD5 99.1 5.9E-11 2E-15 90.7 6.7 115 14-146 77-220 (361)
187 1oix_A RAS-related protein RAB 99.1 7.3E-11 2.5E-15 82.1 6.6 121 14-150 60-182 (191)
188 2j69_A Bacterial dynamin-like 99.1 8E-11 2.7E-15 96.8 7.6 67 30-104 174-244 (695)
189 1pui_A ENGB, probable GTP-bind 99.1 4E-10 1.4E-14 79.1 10.0 121 12-151 57-190 (210)
190 2p67_A LAO/AO transport system 99.1 4.7E-11 1.6E-15 90.6 5.3 106 27-151 146-252 (341)
191 3t34_A Dynamin-related protein 99.1 1.5E-10 5E-15 88.4 7.9 119 15-151 120-252 (360)
192 3def_A T7I23.11 protein; chlor 99.1 5.4E-10 1.8E-14 81.6 10.0 84 13-103 67-164 (262)
193 3l82_B F-box only protein 4; T 99.1 2.1E-10 7.2E-15 81.0 7.2 93 39-149 111-212 (227)
194 3zvr_A Dynamin-1; hydrolase, D 99.1 2.4E-10 8.1E-15 94.4 8.5 121 14-151 133-269 (772)
195 1yrb_A ATP(GTP)binding protein 99.1 3.8E-10 1.3E-14 82.0 7.8 106 29-151 108-248 (262)
196 1h65_A Chloroplast outer envel 99.0 5E-09 1.7E-13 76.7 12.7 85 13-104 70-168 (270)
197 2yv5_A YJEQ protein; hydrolase 99.0 3.1E-10 1.1E-14 84.7 5.7 96 40-152 66-161 (302)
198 2x2e_A Dynamin-1; nitration, h 99.0 5.5E-10 1.9E-14 85.0 6.9 120 14-151 113-249 (353)
199 3l2o_B F-box only protein 4; s 99.0 5.4E-10 1.9E-14 82.5 5.0 95 37-149 194-297 (312)
200 1udx_A The GTP-binding protein 98.9 1.4E-08 4.6E-13 78.9 10.9 118 15-151 189-316 (416)
201 1puj_A YLQF, conserved hypothe 98.9 6.3E-09 2.2E-13 76.9 8.6 94 34-151 3-97 (282)
202 2qpt_A EH domain-containing pr 98.9 4.2E-09 1.4E-13 84.5 7.4 68 30-104 154-232 (550)
203 2www_A Methylmalonic aciduria 98.8 7.6E-09 2.6E-13 78.7 7.1 106 27-151 164-270 (349)
204 3ec1_A YQEH GTPase; atnos1, at 98.8 3.5E-09 1.2E-13 81.1 5.1 104 31-151 50-153 (369)
205 3h2y_A GTPase family protein; 98.8 3.7E-09 1.3E-13 81.0 4.4 97 39-151 55-151 (368)
206 2wsm_A Hydrogenase expression/ 98.7 2.6E-09 8.8E-14 75.6 1.5 99 28-151 107-205 (221)
207 2qnr_A Septin-2, protein NEDD5 98.7 4.9E-08 1.7E-12 72.8 7.0 102 30-151 76-205 (301)
208 3cnl_A YLQF, putative uncharac 98.6 2.8E-08 9.6E-13 72.7 3.4 88 37-151 4-92 (262)
209 1jal_A YCHF protein; nucleotid 98.5 2.9E-07 1E-11 70.2 8.1 54 12-65 31-108 (363)
210 1t9h_A YLOQ, probable GTPase E 98.5 2E-07 7E-12 69.6 7.1 89 47-152 80-169 (307)
211 2qag_C Septin-7; cell cycle, c 98.5 3.4E-07 1.2E-11 71.1 6.7 102 30-150 88-217 (418)
212 4a9a_A Ribosome-interacting GT 98.4 5.6E-07 1.9E-11 69.0 7.3 84 11-103 100-195 (376)
213 2qm8_A GTPase/ATPase; G protei 98.4 9.1E-07 3.1E-11 66.9 7.6 107 27-151 145-252 (337)
214 2dby_A GTP-binding protein; GD 98.4 2.2E-06 7.5E-11 65.6 9.5 37 29-65 68-111 (368)
215 2j37_W Signal recognition part 98.2 3.3E-06 1.1E-10 67.1 7.4 65 28-103 182-253 (504)
216 2rcn_A Probable GTPase ENGC; Y 98.1 7.5E-06 2.6E-10 62.3 6.6 84 50-151 127-210 (358)
217 3dm5_A SRP54, signal recogniti 98.0 6.1E-05 2.1E-09 58.8 10.3 96 28-151 181-282 (443)
218 1j8m_F SRP54, signal recogniti 97.8 0.0002 6.9E-09 53.1 10.3 96 28-151 179-282 (297)
219 3ec1_A YQEH GTPase; atnos1, at 97.8 6.9E-07 2.4E-11 68.3 -3.2 116 12-151 197-322 (369)
220 2hf9_A Probable hydrogenase ni 97.8 1.3E-05 4.4E-10 56.5 3.4 96 31-151 120-215 (226)
221 3kl4_A SRP54, signal recogniti 97.7 0.0003 1E-08 54.8 10.0 96 28-151 178-281 (433)
222 3h2y_A GTPase family protein; 97.7 8.5E-07 2.9E-11 67.8 -4.3 83 11-104 195-287 (368)
223 2v3c_C SRP54, signal recogniti 97.6 0.00066 2.3E-08 52.9 10.9 66 28-103 179-251 (432)
224 2ohf_A Protein OLA1, GTP-bindi 97.3 0.00023 7.9E-09 54.8 4.1 55 11-65 50-128 (396)
225 2qag_B Septin-6, protein NEDD5 97.1 0.0013 4.5E-08 51.1 7.3 53 56-121 151-203 (427)
226 2ph1_A Nucleotide-binding prot 96.8 0.0045 1.5E-07 44.6 7.3 67 28-102 127-194 (262)
227 3kjh_A CO dehydrogenase/acetyl 96.6 0.003 1E-07 44.7 4.9 65 28-101 130-194 (254)
228 2xxa_A Signal recognition part 96.5 0.008 2.7E-07 46.8 7.4 65 28-103 182-253 (433)
229 1g3q_A MIND ATPase, cell divis 96.3 0.0057 1.9E-07 43.0 4.8 66 28-102 110-175 (237)
230 1hyq_A MIND, cell division inh 96.1 0.0078 2.7E-07 43.1 4.8 66 28-102 109-174 (263)
231 4dzz_A Plasmid partitioning pr 96.0 0.023 7.7E-07 38.9 6.6 64 28-102 74-142 (206)
232 3la6_A Tyrosine-protein kinase 96.0 0.02 6.9E-07 42.0 6.6 66 30-103 202-267 (286)
233 3cwq_A Para family chromosome 95.8 0.012 4E-07 41.1 4.5 66 28-103 66-133 (209)
234 1wcv_1 SOJ, segregation protei 95.7 0.076 2.6E-06 37.9 8.7 68 28-102 110-181 (257)
235 1ni3_A YCHF GTPase, YCHF GTP-b 95.6 0.019 6.4E-07 44.2 5.5 54 12-65 50-127 (392)
236 3cio_A ETK, tyrosine-protein k 95.5 0.048 1.6E-06 40.2 7.2 66 30-103 214-279 (299)
237 3ea0_A ATPase, para family; al 95.4 0.022 7.4E-07 40.2 4.7 66 29-103 118-185 (245)
238 3bfv_A CAPA1, CAPB2, membrane 95.3 0.029 9.8E-07 40.8 5.4 67 29-103 191-257 (271)
239 3e70_C DPA, signal recognition 95.2 0.12 4.1E-06 38.7 8.5 94 29-151 211-311 (328)
240 1ls1_A Signal recognition part 95.2 0.18 6.1E-06 37.0 9.3 66 28-103 179-250 (295)
241 3k9g_A PF-32 protein; ssgcid, 95.1 0.055 1.9E-06 38.8 6.2 65 28-102 143-209 (267)
242 1tq4_A IIGP1, interferon-induc 95.0 0.084 2.9E-06 40.8 7.3 107 31-150 121-243 (413)
243 2ffh_A Protein (FFH); SRP54, s 95.0 0.068 2.3E-06 41.5 6.8 66 28-103 179-250 (425)
244 3q9l_A Septum site-determining 94.8 0.029 9.9E-07 39.9 4.1 64 29-101 113-184 (260)
245 3sop_A Neuronal-specific septi 94.7 0.1 3.6E-06 37.8 6.9 62 54-128 112-174 (270)
246 1zu4_A FTSY; GTPase, signal re 94.7 0.065 2.2E-06 40.0 5.9 66 28-103 190-267 (320)
247 2oze_A ORF delta'; para, walke 94.6 0.089 3E-06 38.3 6.3 66 28-102 153-224 (298)
248 3end_A Light-independent proto 94.2 0.057 2E-06 39.6 4.6 66 28-101 155-224 (307)
249 1vma_A Cell division protein F 94.1 0.1 3.5E-06 38.6 5.8 65 28-103 185-262 (306)
250 3ez9_A Para; DNA binding, wing 93.3 0.12 4E-06 39.5 5.0 72 28-101 246-321 (403)
251 2xj4_A MIPZ; replication, cell 93.1 0.44 1.5E-05 34.5 7.6 34 29-64 103-136 (286)
252 1rj9_A FTSY, signal recognitio 92.8 2 6.7E-05 31.6 10.8 64 29-103 184-260 (304)
253 3szr_A Interferon-induced GTP- 92.4 0.26 8.7E-06 40.0 6.1 70 29-105 146-229 (608)
254 2yhs_A FTSY, cell division pro 91.9 0.47 1.6E-05 37.6 6.8 65 28-103 374-451 (503)
255 2px0_A Flagellar biosynthesis 91.8 0.13 4.6E-06 37.8 3.5 66 28-103 181-252 (296)
256 1byi_A Dethiobiotin synthase; 90.9 0.72 2.4E-05 31.7 6.3 68 28-102 107-179 (224)
257 3ug7_A Arsenical pump-driving 90.2 1.5 5E-05 32.9 7.9 86 54-149 237-324 (349)
258 3ez2_A Plasmid partition prote 90.1 0.41 1.4E-05 36.4 4.8 35 28-64 243-277 (398)
259 1cp2_A CP2, nitrogenase iron p 89.2 0.3 1E-05 34.7 3.3 68 28-102 114-186 (269)
260 2afh_E Nitrogenase iron protei 88.6 0.4 1.4E-05 34.7 3.7 67 28-101 117-188 (289)
261 1f5n_A Interferon-induced guan 85.9 0.33 1.1E-05 39.3 2.0 16 28-43 89-104 (592)
262 3zq6_A Putative arsenical pump 85.6 4 0.00014 30.0 7.7 42 55-103 223-264 (324)
263 1ihu_A Arsenical pump-driving 84.1 1.4 4.8E-05 35.3 5.0 43 53-102 489-531 (589)
264 2woj_A ATPase GET3; tail-ancho 81.6 1.9 6.5E-05 32.4 4.5 42 53-101 234-275 (354)
265 1s2d_A Purine trans deoxyribos 78.1 5.4 0.00019 26.6 5.5 41 47-96 75-115 (167)
266 1puj_A YLQF, conserved hypothe 77.7 1 3.5E-05 32.8 1.9 29 11-42 149-177 (282)
267 3io3_A DEHA2D07832P; chaperone 77.0 13 0.00043 27.9 7.8 42 55-103 232-273 (348)
268 3ehd_A Uncharacterized conserv 73.2 5.3 0.00018 26.6 4.3 45 45-98 61-105 (162)
269 1f8y_A Nucleoside 2-deoxyribos 72.3 4.2 0.00014 26.9 3.7 44 47-99 72-115 (157)
270 3pg5_A Uncharacterized protein 71.2 4.4 0.00015 30.3 4.0 34 29-64 153-186 (361)
271 3of5_A Dethiobiotin synthetase 70.1 9.2 0.00031 26.7 5.2 68 28-102 109-181 (228)
272 2og2_A Putative signal recogni 69.9 24 0.00082 26.5 7.8 63 30-103 241-316 (359)
273 3fkq_A NTRC-like two-domain pr 68.5 4.5 0.00015 30.4 3.6 36 28-65 258-293 (373)
274 2f62_A Nucleoside 2-deoxyribos 68.1 6.2 0.00021 26.2 3.8 48 46-99 60-107 (161)
275 3b9q_A Chloroplast SRP recepto 67.3 25 0.00085 25.6 7.3 63 30-103 184-259 (302)
276 3iqw_A Tail-anchored protein t 65.6 38 0.0013 25.0 9.1 41 55-102 223-263 (334)
277 3qxc_A Dethiobiotin synthetase 64.3 18 0.00063 25.5 5.9 67 28-102 130-201 (242)
278 1ihu_A Arsenical pump-driving 63.3 9.2 0.00031 30.6 4.6 41 55-102 199-239 (589)
279 2khz_A C-MYC-responsive protei 58.8 18 0.00063 23.8 4.8 45 46-101 70-114 (165)
280 4fyk_A Deoxyribonucleoside 5'- 57.2 19 0.00065 23.7 4.5 44 44-98 59-102 (152)
281 2woo_A ATPase GET3; tail-ancho 55.9 25 0.00085 25.8 5.6 41 55-102 222-262 (329)
282 4a9a_A Ribosome-interacting GT 54.8 6.1 0.00021 30.0 2.1 43 89-151 249-291 (376)
283 3fgn_A Dethiobiotin synthetase 54.4 35 0.0012 24.2 5.9 67 28-101 125-197 (251)
284 3abz_A Beta-glucosidase I; gly 45.7 82 0.0028 26.7 7.6 54 44-98 564-622 (845)
285 3v7e_A Ribosome-associated pro 41.0 32 0.0011 19.7 3.3 48 44-101 16-64 (82)
286 1eiw_A Hypothetical protein MT 37.1 24 0.00082 21.8 2.4 38 49-95 34-72 (111)
287 4a1x_C CP5-46-A peptide; hydro 36.6 25 0.00085 15.1 1.7 13 29-41 4-16 (26)
288 3zyz_A Beta-D-glucoside glucoh 35.3 1.2E+02 0.0042 25.0 7.0 54 44-98 418-481 (713)
289 3j21_Z 50S ribosomal protein L 35.2 70 0.0024 18.9 4.5 49 44-102 20-70 (99)
290 3hyn_A Putative signal transdu 34.7 72 0.0025 21.7 4.6 55 35-97 60-116 (189)
291 3do6_A Formate--tetrahydrofola 32.9 1.5E+02 0.005 23.7 6.6 25 77-102 348-372 (543)
292 3h75_A Periplasmic sugar-bindi 31.8 1.1E+02 0.0036 22.1 5.7 60 29-101 34-97 (350)
293 3tb6_A Arabinose metabolism tr 31.7 1.3E+02 0.0043 20.7 7.9 65 28-101 44-110 (298)
294 3v7q_A Probable ribosomal prot 31.1 32 0.0011 20.6 2.3 49 44-102 24-73 (101)
295 3on1_A BH2414 protein; structu 29.8 35 0.0012 20.4 2.3 49 44-102 23-72 (101)
296 3iz5_f 60S ribosomal protein L 28.1 51 0.0017 20.2 2.9 49 44-102 31-81 (112)
297 3q5d_A Atlastin-1; G protein, 27.8 81 0.0028 24.5 4.5 33 30-62 140-179 (447)
298 2ale_A SNU13, NHP2/L7AE family 27.7 63 0.0022 20.5 3.4 49 44-101 37-86 (134)
299 2l82_A Designed protein OR32; 23.5 1.4E+02 0.0047 18.5 6.8 46 44-101 68-114 (162)
300 2x41_A Beta-glucosidase; hydro 22.9 2.4E+02 0.0083 23.3 6.7 53 45-98 436-498 (721)
301 2aif_A Ribosomal protein L7A; 22.2 1.1E+02 0.0037 19.3 3.7 49 44-101 46-95 (135)
302 2xzm_U Ribosomal protein L7AE 22.0 95 0.0032 19.4 3.3 49 44-101 29-78 (126)
303 1vi6_A 30S ribosomal protein S 20.9 1.1E+02 0.0037 21.2 3.6 33 52-98 114-146 (208)
304 2lbf_A 60S acidic ribosomal pr 20.5 14 0.00048 20.8 -0.8 33 119-151 28-60 (69)
No 1
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.96 E-value=5.5e-28 Score=189.30 Aligned_cols=148 Identities=74% Similarity=1.157 Sum_probs=134.0
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|.+++|+++|+|++.....+.+++++++|||||||++|.+.+..+++.+|++|+|+|++++.++.+|+...++.+++..
T Consensus 70 ~d~~~~er~~GiTid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~ 149 (439)
T 3j2k_7 70 LDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAML 149 (439)
T ss_pred hccchhHhhcCceEEEeEEEEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999877778777899999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+...++|++|+++||+|+...++.+..++++.+++..+++.+++.+..+++++++||++|.|++++.+
T Consensus 150 ~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 150 AKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 99899988899999999977777777888889999999998888654467999999999999998764
No 2
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.93 E-value=5.9e-26 Score=179.02 Aligned_cols=148 Identities=58% Similarity=0.967 Sum_probs=102.6
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|..++|+++|+|++.....+.++++.++|||||||++|.+.+..+++.+|++|+|+|++++.++.+|+...++.+++..
T Consensus 96 ~D~~~~er~~giTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~ 175 (467)
T 1r5b_A 96 LDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL 175 (467)
T ss_dssp -----------------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHH
T ss_pred cccchhhhhcCceEEeeeEEEecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999998767788877899999988
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHc-CCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKL-GFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+...++|++|+++||+|+...++++..++.+.+++..+++.. ++.+..+++++++||++|.|++++..
T Consensus 176 ~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 176 ARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp HHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred HHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 888899878999999998766666667778888888888877 76411146899999999999998764
No 3
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.92 E-value=5.9e-25 Score=172.01 Aligned_cols=147 Identities=43% Similarity=0.686 Sum_probs=113.3
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|..++|+++|+|++.....+.+.++.++|||||||++|...+..+++.+|++|+|+|++++.++..+....++.+++..
T Consensus 59 ~D~~~~E~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~ 138 (435)
T 1jny_A 59 LDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIIL 138 (435)
T ss_dssp HHHHHHC-----------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHH
T ss_pred hccChHHHhcCceeEeeEEEEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999987443333345788888888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+...+++++++++||+|+...++++..++.+.+++..+++..++.+. .++++++||++|+|+.++..
T Consensus 139 ~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 139 AKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTN-KVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCT-TCEEEECBTTTTBTTTBCCS
T ss_pred HHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcC-CceEEEeecccCcccccccc
Confidence 88888876899999999876545556677788888888888887442 57999999999999987654
No 4
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.92 E-value=2.4e-24 Score=170.53 Aligned_cols=145 Identities=41% Similarity=0.748 Sum_probs=114.0
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+|.+..|+++|+|++.....+...+..+.|||||||++|...+..+++++|++|+|+|++++.++..+....++.+++..
T Consensus 86 ~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~ 165 (483)
T 3p26_A 86 MDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLL 165 (483)
T ss_dssp ---------CCSSCCCCEEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHH
T ss_pred hccchhHhhcCcceEeeeEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999988655555556788888888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+...+++++|+|+||+|+.. +....++++++++..+++..++... .++++++||++|+|++++..
T Consensus 166 ~~~~~~~~iIvviNK~Dl~~--~~~~~~~~i~~~~~~~l~~~g~~~~-~~~~i~iSA~~g~gi~el~~ 230 (483)
T 3p26_A 166 ASSLGIHNLIIAMNKMDNVD--WSQQRFEEIKSKLLPYLVDIGFFED-NINWVPISGFSGEGVYKIEY 230 (483)
T ss_dssp HHHTTCCCEEEEEECGGGGT--TCHHHHHHHHHHHHHHHHHHTCCGG-GEEEEECCSSSCTTSSSSCC
T ss_pred HHHcCCCcEEEEEECcCccc--chHHHHHHHHHHHHHHHHHcCCCcc-cceEEEEeeecCCCccccCc
Confidence 88888776999999999753 3456678888888888888887532 57899999999999998764
No 5
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.92 E-value=1e-24 Score=171.66 Aligned_cols=144 Identities=43% Similarity=0.723 Sum_probs=121.8
Q ss_pred cccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 6 LWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 6 ~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
|..++|+++|+|++.....+..+++.++|||||||++|...+..++..+|++|+|+|++++.++.+|+...++.+++..+
T Consensus 61 d~~~~er~~GiTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~ 140 (458)
T 1f60_A 61 DKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA 140 (458)
T ss_dssp HHHHHHHHTTCCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH
T ss_pred ccchhHHhcCcEEEEEEEEEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH
Confidence 56678999999999999999999999999999999999999999999999999999999876455665556888888888
Q ss_pred HHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 86 KTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 86 ~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
...++|++|+++||+|+. .++...++++.+++..+++..++.+. +++++++||++|.|++++..
T Consensus 141 ~~~~v~~iivviNK~Dl~--~~~~~~~~~i~~~~~~~l~~~g~~~~-~~~~i~vSA~~g~nv~~~~~ 204 (458)
T 1f60_A 141 FTLGVRQLIVAVNKMDSV--KWDESRFQEIVKETSNFIKKVGYNPK-TVPFVPISGWNGDNMIEATT 204 (458)
T ss_dssp HHTTCCEEEEEEECGGGG--TTCHHHHHHHHHHHHHHHHHHTCCGG-GCCEEECCTTTCBTTTBCCS
T ss_pred HHcCCCeEEEEEEccccc--cCCHHHHHHHHHHHHHHHHHcCCCcc-CceEEEeecccCcCcccccc
Confidence 888888789999999976 23445567777888888888877432 47999999999999988754
No 6
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.4e-24 Score=171.95 Aligned_cols=145 Identities=41% Similarity=0.748 Sum_probs=125.6
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+|.++.|+++|+|++.....+.+.+++++|||||||++|...+..+++.+|++|+|+|++.+.++.+|....++.+++..
T Consensus 220 ~d~~~~e~~~GiTid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~ 299 (611)
T 3izq_1 220 MDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLL 299 (611)
T ss_dssp HHHHHHHHHTTTCCSCSCCEEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHH
T ss_pred eccchhhhhCCeeEeeeeEEEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999987656666667889999888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+...+++++|+|+||+|+.. +....++++.+++..++...++... .++++++||++|.|++++..
T Consensus 300 ~~~lgi~~iIVVvNKiDl~~--~~~~~~~ei~~~l~~~l~~~g~~~~-~~~~i~vSA~tG~gI~el~~ 364 (611)
T 3izq_1 300 ASSLGIHNLIIAMNKMDNVD--WSQQRFEEIKSKLLPYLVDIGFFED-NINWVPISGFSGEGVYKIEY 364 (611)
T ss_dssp HHTTTCCEEEEEEECTTTTT--TCHHHHHHHHHHHHHHHHHHTCCGG-GCEEEECCTTTCTTTSSCTT
T ss_pred HHHcCCCeEEEEEecccccc--hhHHHHHHHHHHHHHHHHhhccccc-CccEEeeecccCCCccccCc
Confidence 88888887899999999763 3455677788888888888887542 57999999999999998753
No 7
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.90 E-value=5.3e-23 Score=160.89 Aligned_cols=138 Identities=34% Similarity=0.557 Sum_probs=110.1
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|.+++|+++|+|++.....+..++..+.|||||||++|...+..+++.+|++|+|+|++++. ..++.+++..
T Consensus 79 ~d~~~~E~~rGiTi~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~-------~~qt~~~l~~ 151 (434)
T 1zun_B 79 VDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV-------QTQTRRHSYI 151 (434)
T ss_dssp HHHHHC-----CCCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS-------CHHHHHHHHH
T ss_pred hccChhHHHCCcEEEeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCC-------cHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999999886 3677788777
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+...+++++|+++||+|+... .+..++++.+++..+++.+++.. ..++++++||++|.|++++.+
T Consensus 152 ~~~~~~~~iIvviNK~Dl~~~--~~~~~~~i~~~~~~~~~~~g~~~-~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 152 ASLLGIKHIVVAINKMDLNGF--DERVFESIKADYLKFAEGIAFKP-TTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHTTCCEEEEEEECTTTTTS--CHHHHHHHHHHHHHHHHTTTCCC-SEEEEEECCTTTCTTTSSCCT
T ss_pred HHHcCCCeEEEEEEcCcCCcc--cHHHHHHHHHHHHHHHHHhCCCc-cCceEEEEeccCCCCcccccc
Confidence 777888768999999998642 34445666777888887776311 246899999999999998654
No 8
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.89 E-value=1.7e-24 Score=174.85 Aligned_cols=145 Identities=39% Similarity=0.666 Sum_probs=89.7
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..|.+++|+++|+|++.....+.++++.++|||||||++|...+..+++.+|++|+|+|++.+.++.++....++.+++.
T Consensus 229 ~~D~~~~E~~~GiTid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~ 308 (592)
T 3mca_A 229 LLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAY 308 (592)
T ss_dssp ------------------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHH
T ss_pred hhccchhhhcCCeeEEeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHH
Confidence 35778899999999999999999999999999999999999999999999999999999998766666655688999999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHH-HHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYL-KKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+...++|++|+|+||+|+.. +....+..+.+++..++ +..++... +++++++||++|.|+.++.
T Consensus 309 ~~~~lgip~iIvviNKiDl~~--~~~~~~~~i~~el~~~l~~~~g~~~~-~~~ii~iSA~~G~gI~e~~ 374 (592)
T 3mca_A 309 LLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTS-NVHFVPISAISGTNLIQKD 374 (592)
T ss_dssp HHHHSSCCCEEEEEECGGGGT--TCHHHHHHHHHHHHHHHTTTSCCCGG-GEEEEEECSSSCSSSCSCC
T ss_pred HHHHcCCCeEEEEEecccccc--ccHHHHHHHHHHHHHHHHHhhCCCcc-ceEEEEEecccCccccccc
Confidence 999899987899999999753 34556777778888887 77777432 5689999999999998654
No 9
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.89 E-value=3e-23 Score=166.21 Aligned_cols=105 Identities=25% Similarity=0.404 Sum_probs=81.7
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
++|+.+.|++||+|+..+...+.|+++.|+|+|||||.+|...+.++++-+|++|+|||+.+|. ..+++..|+
T Consensus 74 ~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV-------~~qT~~v~~ 146 (548)
T 3vqt_A 74 TSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGV-------EAQTRKLMD 146 (548)
T ss_dssp --------------CTTTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBS-------CHHHHHHHH
T ss_pred ccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCc-------ccccHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999999998 699999999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHH
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKD 117 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~ 117 (156)
.+...++| .++++||||+..++... .++++++
T Consensus 147 ~a~~~~lp-~i~fINK~Dr~~ad~~~-~~~~i~~ 178 (548)
T 3vqt_A 147 VCRMRATP-VMTFVNKMDREALHPLD-VMADIEQ 178 (548)
T ss_dssp HHHHTTCC-EEEEEECTTSCCCCHHH-HHHHHHH
T ss_pred HHHHhCCc-eEEEEecccchhcchhH-hhhhhhh
Confidence 99999999 69999999997765433 2444443
No 10
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.88 E-value=2.5e-22 Score=155.80 Aligned_cols=131 Identities=31% Similarity=0.480 Sum_probs=110.8
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|..++|+++|+|++.....+...+..++|||||||++|...+..+++.+|++|+|+|++++. ..++.+++..
T Consensus 50 ~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~-------~~qt~~~l~~ 122 (405)
T 2c78_A 50 IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGP-------MPQTREHILL 122 (405)
T ss_dssp HSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCC-------CHHHHHHHHH
T ss_pred ccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCC-------cHHHHHHHHH
Confidence 467789999999999999999999999999999999999999999999999999999999886 3677888888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKN 146 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~g 146 (156)
+...++|++++++||+|+.. ....++.+.+++..+++..++... .++++++||++|.|
T Consensus 123 ~~~~~ip~iivviNK~Dl~~---~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 123 ARQVGVPYIVVFMNKVDMVD---DPELLDLVEMEVRDLLNQYEFPGD-EVPVIRGSALLALE 180 (405)
T ss_dssp HHHTTCCCEEEEEECGGGCC---CHHHHHHHHHHHHHHHHHTTSCTT-TSCEEECCHHHHHH
T ss_pred HHHcCCCEEEEEEECccccC---cHHHHHHHHHHHHHHHHHhccccc-CCCEEEccHHHhhh
Confidence 88889987789999999863 233355566677778888776432 57999999999987
No 11
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.88 E-value=1.5e-22 Score=160.11 Aligned_cols=132 Identities=23% Similarity=0.392 Sum_probs=99.4
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|.+++|+++|+|++..+..+.++++.+++||||||++|...+..++..+|++++|+|++++. ..++.+++..
T Consensus 48 ~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~-------~~qt~e~l~~ 120 (482)
T 1wb1_A 48 HDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGP-------KTQTGEHMLI 120 (482)
T ss_dssp ----------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCS-------CHHHHHHHHH
T ss_pred cccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCc-------cHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999887 4788888888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHc-CCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKL-GFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...++| .++++||+|+.. ...+++..+++..+++.. ++. +.+++++||++|+|+++|.
T Consensus 121 ~~~~~ip-~IvviNK~Dl~~----~~~~~~~~~~l~~~l~~~~~~~---~~~ii~vSA~~g~gI~~L~ 180 (482)
T 1wb1_A 121 LDHFNIP-IIVVITKSDNAG----TEEIKRTEMIMKSILQSTHNLK---NSSIIPISAKTGFGVDELK 180 (482)
T ss_dssp HHHTTCC-BCEEEECTTSSC----HHHHHHHHHHHHHHHHHSSSGG---GCCEEECCTTTCTTHHHHH
T ss_pred HHHcCCC-EEEEEECCCccc----chhHHHHHHHHHHHHhhhcccc---cceEEEEECcCCCCHHHHH
Confidence 8888999 599999999863 334566667777777766 542 4699999999999998764
No 12
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.87 E-value=3.3e-22 Score=154.81 Aligned_cols=131 Identities=31% Similarity=0.458 Sum_probs=110.2
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|..++|+++|+|++.....+..+++.++|||||||++|...+..+++.+|++|+|+|++++. ..++.+++..
T Consensus 41 ~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~-------~~qt~e~l~~ 113 (397)
T 1d2e_A 41 IDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGP-------MPQTREHLLL 113 (397)
T ss_dssp HHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCS-------CHHHHHHHHH
T ss_pred hhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCC-------CHHHHHHHHH
Confidence 456678899999999999889888999999999999999999999999999999999999887 4778888888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKN 146 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~g 146 (156)
+...++|++++++||+|+.. ....++.+.+++..+++..++... .++++++||++|.|
T Consensus 114 ~~~~~vp~iivviNK~Dl~~---~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SA~~g~n 171 (397)
T 1d2e_A 114 ARQIGVEHVVVYVNKADAVQ---DSEMVELVELEIRELLTEFGYKGE-ETPIIVGSALCALE 171 (397)
T ss_dssp HHHTTCCCEEEEEECGGGCS---CHHHHHHHHHHHHHHHHHTTSCTT-TSCEEECCHHHHHT
T ss_pred HHHcCCCeEEEEEECcccCC---CHHHHHHHHHHHHHHHHHcCCCcc-cCcEEEeehhhccc
Confidence 88889997789999999863 233455666778888888876432 57999999999876
No 13
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.87 E-value=6.3e-23 Score=167.00 Aligned_cols=98 Identities=28% Similarity=0.411 Sum_probs=91.7
Q ss_pred cCccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 3 GQGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 3 ~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
.++|+.++|++||+|+..+...+.|+++.++|+|||||.+|...+.++++.+|++|+|||+.+|. ..|++..+
T Consensus 40 ~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV-------~~qT~~v~ 112 (638)
T 3j25_A 40 TRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGV-------QAQTRILF 112 (638)
T ss_dssp CSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTT-------CSHHHHHH
T ss_pred cccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCC-------cHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999998 58999999
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
+++...++| .|+++||||+..++..
T Consensus 113 ~~a~~~~lp-~i~~INKmDr~~a~~~ 137 (638)
T 3j25_A 113 HALRKMGIP-TIFFINKIDQNGIDLS 137 (638)
T ss_dssp HHHHHHTCS-CEECCEECCSSSCCSH
T ss_pred HHHHHcCCC-eEEEEeccccccCCHH
Confidence 999999999 5889999998776543
No 14
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.85 E-value=4e-21 Score=162.57 Aligned_cols=129 Identities=29% Similarity=0.449 Sum_probs=98.3
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|.+++|+++|+|++.....+..++..++|||||||++|...+..+++.+|++|+|+|++++. ..++.+++..
T Consensus 334 lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv-------~~QTrEhL~l 406 (1289)
T 3avx_A 334 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGP-------MPQTREHILL 406 (1289)
T ss_dssp --------------CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCS-------CTTHHHHHHH
T ss_pred cccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccC-------cHHHHHHHHH
Confidence 466788999999999999999999999999999999999999999999999999999999987 3678888888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELE 144 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g 144 (156)
+...++|++|+++||+|+.. ....++.+++++..+++..++... .++++++||++|
T Consensus 407 l~~lgIP~IIVVINKiDLv~---d~e~le~i~eEi~elLk~~G~~~~-~vp~IpvSAktG 462 (1289)
T 3avx_A 407 GRQVGVPYIIVFLNKCDMVD---DEELLELVEMEVRELLSQYDFPGD-DTPIVRGSALKA 462 (1289)
T ss_dssp HHHHTCSCEEEEEECCTTCC---CHHHHHHHHHHHHHHHHHTTSCTT-TCCEEECCSTTT
T ss_pred HHHcCCCeEEEEEeeccccc---chhhHHHHHHHHHHHHHhcccccc-ceeEEEEEeccC
Confidence 88889997789999999864 233455666778888888876432 579999999999
No 15
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.85 E-value=9.8e-21 Score=152.78 Aligned_cols=129 Identities=21% Similarity=0.277 Sum_probs=88.5
Q ss_pred CccccHHHhhcCceeeeeeEEEEeC-----CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcch
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETD-----RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQT 78 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~-----~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~ 78 (156)
..|..+.|+++|+|+......+.+. ++.++|||||||.+|...+..+++.+|++|+|+|++++. ..++
T Consensus 40 ~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv-------~~qt 112 (599)
T 3cb4_D 40 VLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGV-------EAQT 112 (599)
T ss_dssp -----------------CEEEEEEECTTSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCC-------CTHH
T ss_pred ccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCC-------CHHH
Confidence 3577889999999999998888775 378999999999999999999999999999999999987 4678
Q ss_pred HHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 79 REHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 79 ~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+..+...++| +++++||+|+..... .+..+++. +..++. ..+++++||++|.|+++|.
T Consensus 113 ~~~~~~~~~~~ip-iIvViNKiDl~~a~~-----~~v~~ei~---~~lg~~---~~~vi~vSAktg~GI~~Ll 173 (599)
T 3cb4_D 113 LANCYTAMEMDLE-VVPVLNKIDLPAADP-----ERVAEEIE---DIVGID---ATDAVRCSAKTGVGVQDVL 173 (599)
T ss_dssp HHHHHHHHHTTCE-EEEEEECTTSTTCCH-----HHHHHHHH---HHTCCC---CTTCEEECTTTCTTHHHHH
T ss_pred HHHHHHHHHCCCC-EEEeeeccCcccccH-----HHHHHHHH---HHhCCC---cceEEEeecccCCCchhHH
Confidence 8888888888998 899999999875431 22222332 233442 2368999999999998753
No 16
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.84 E-value=7.9e-21 Score=147.59 Aligned_cols=134 Identities=25% Similarity=0.311 Sum_probs=100.1
Q ss_pred ccccHHHhhcCceeeeeeEEEEeC-----------------------CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEE
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETD-----------------------RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVI 61 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~-----------------------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvv 61 (156)
.+..++|+++|+|++..+..+.+. ...++|||||||++|...+..++..+|++|+|+
T Consensus 35 ~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVv 114 (410)
T 1kk1_A 35 TDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVI 114 (410)
T ss_dssp CC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEE
T ss_pred cccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEE
Confidence 456788999999998876655441 168999999999999999999999999999999
Q ss_pred eCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeec
Q psy10355 62 SARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSG 141 (156)
Q Consensus 62 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 141 (156)
|++++.. ..++.+++..+...+.+++++++||+|+.... ...+..+++..+++.... ..++++++||
T Consensus 115 da~~g~~------~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~----~~~~~~~~i~~~l~~~~~---~~~~~i~vSA 181 (410)
T 1kk1_A 115 AANEPCP------RPQTREHLMALQIIGQKNIIIAQNKIELVDKE----KALENYRQIKEFIEGTVA---ENAPIIPISA 181 (410)
T ss_dssp ETTSCSS------CHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH----HHHHHHHHHHHHHTTSTT---TTCCEEECBT
T ss_pred ECCCCCC------ChhHHHHHHHHHHcCCCcEEEEEECccCCCHH----HHHHHHHHHHHHHHhcCc---CCCeEEEeeC
Confidence 9988641 36788888777777876689999999986422 122233344445443221 3579999999
Q ss_pred ccCCCCccCC
Q psy10355 142 ELEKNPLLLG 151 (156)
Q Consensus 142 ~~g~gi~~l~ 151 (156)
++|.|++.|.
T Consensus 182 ~~g~gi~~L~ 191 (410)
T 1kk1_A 182 LHGANIDVLV 191 (410)
T ss_dssp TTTBSHHHHH
T ss_pred CCCCCHHHHH
Confidence 9999998653
No 17
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.84 E-value=7.5e-21 Score=153.32 Aligned_cols=128 Identities=23% Similarity=0.253 Sum_probs=90.4
Q ss_pred CccccHHHhhcCceeeeeeEEEEeC-----CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcch
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETD-----RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQT 78 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~-----~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~ 78 (156)
..|..+.|+++|+|+......+.+. .+.++|||||||.+|...+..+++.+|++|+|+|++++. ..++
T Consensus 42 ~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv-------~~qt 114 (600)
T 2ywe_A 42 LLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGI-------EAQT 114 (600)
T ss_dssp --------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBC-------CHHH
T ss_pred ccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCc-------cHHH
Confidence 3578889999999999888888764 278999999999999999999999999999999999987 4678
Q ss_pred HHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 79 REHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 79 ~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
...+..+...++| +++++||+|+..... .+..+++. +..++. ..+++++||++|.|+++|
T Consensus 115 ~~~~~~a~~~~ip-iIvviNKiDl~~a~~-----~~v~~el~---~~lg~~---~~~vi~vSAktg~GI~~L 174 (600)
T 2ywe_A 115 VANFWKAVEQDLV-IIPVINKIDLPSADV-----DRVKKQIE---EVLGLD---PEEAILASAKEGIGIEEI 174 (600)
T ss_dssp HHHHHHHHHTTCE-EEEEEECTTSTTCCH-----HHHHHHHH---HTSCCC---GGGCEECBTTTTBSHHHH
T ss_pred HHHHHHHHHCCCC-EEEEEeccCccccCH-----HHHHHHHH---HhhCCC---cccEEEEEeecCCCchHH
Confidence 8888888888999 899999999875431 22222232 333442 236899999999999765
No 18
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.83 E-value=2e-20 Score=143.58 Aligned_cols=123 Identities=17% Similarity=0.206 Sum_probs=101.6
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCc
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKH 92 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (156)
++|+|++.....+.++++.++|||||||++|...+..+++.+|++|+|+| +.+. ..++.+++..+...++|.
T Consensus 43 ~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~-------~~qt~e~~~~~~~~~i~~ 114 (370)
T 2elf_A 43 KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGL-------DAHTGECIIALDLLGFKH 114 (370)
T ss_dssp EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCC-------CHHHHHHHHHHHHTTCCE
T ss_pred hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCC-------cHHHHHHHHHHHHcCCCe
Confidence 68999999999999999999999999999999999999999999999999 8776 477888888888889995
Q ss_pred EEEEEe-CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEE--eeccc---CCCCccCC
Q psy10355 93 LVVLIN-KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMP--CSGEL---EKNPLLLG 151 (156)
Q Consensus 93 ~ivv~N-K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~Sa~~---g~gi~~l~ 151 (156)
+++++| |+|+ .. ...++..+++..+++..++ ..+++++ +||++ |+|+++|.
T Consensus 115 ~ivvvNNK~Dl-~~----~~~~~~~~~i~~~l~~~~~---~~~~ii~~~~SA~~~~~g~gi~~L~ 171 (370)
T 2elf_A 115 GIIALTRSDST-HM----HAIDELKAKLKVITSGTVL---QDWECISLNTNKSAKNPFEGVDELK 171 (370)
T ss_dssp EEEEECCGGGS-CH----HHHHHHHHHHHHHTTTSTT---TTCEEEECCCCTTSSSTTTTHHHHH
T ss_pred EEEEEEeccCC-CH----HHHHHHHHHHHHHHHhcCC---CceEEEecccccccCcCCCCHHHHH
Confidence 488999 9997 32 2234445556666655443 2579999 99999 99988764
No 19
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.83 E-value=2.7e-20 Score=144.49 Aligned_cols=134 Identities=25% Similarity=0.371 Sum_probs=88.1
Q ss_pred ccccHHHhhcCceeeeeeEEEEe---------------C--------CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEE
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFET---------------D--------RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVI 61 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~---------------~--------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvv 61 (156)
.+..++|+++|+|++..+..... . ...+.|||||||++|...+..++..+|++|+|+
T Consensus 33 ~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVv 112 (408)
T 1s0u_A 33 TDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVI 112 (408)
T ss_dssp CCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEE
T ss_pred cccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEE
Confidence 45678899999999877655433 1 168999999999999999999999999999999
Q ss_pred eCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeec
Q psy10355 62 SARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSG 141 (156)
Q Consensus 62 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 141 (156)
|++++.. ..++.+++..+...+.+++++++||+|+.........+++ +..+++.... .+++++++||
T Consensus 113 da~~g~~------~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~----i~~~l~~~~~---~~~~~i~vSA 179 (408)
T 1s0u_A 113 AANEPCP------QPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQ----IKEFVKGTIA---ENAPIIPISA 179 (408)
T ss_dssp ETTSCSS------CHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHH----HHHHHTTSTT---TTCCEEEC--
T ss_pred ECCCCCC------CchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHH----HHHHHhhcCC---CCCeEEEeeC
Confidence 9988641 3677788777777777668999999998754322222333 3444443221 2579999999
Q ss_pred ccCCCCccCC
Q psy10355 142 ELEKNPLLLG 151 (156)
Q Consensus 142 ~~g~gi~~l~ 151 (156)
++|+|++.|.
T Consensus 180 ~~g~gi~~L~ 189 (408)
T 1s0u_A 180 HHEANIDVLL 189 (408)
T ss_dssp ----CHHHHH
T ss_pred CCCCCHHHHH
Confidence 9999998753
No 20
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.83 E-value=4.9e-20 Score=151.66 Aligned_cols=97 Identities=25% Similarity=0.322 Sum_probs=74.2
Q ss_pred cCccccHHHhhcCceeeeeeEEEEeC-------CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC
Q psy10355 3 GQGLWLRQKREKGKTVEVGRAYFETD-------RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG 75 (156)
Q Consensus 3 ~~~~~~~~e~~~g~t~~~~~~~~~~~-------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~ 75 (156)
.++|+.++|++||+|+..+...+.|. ++.++|+|||||-+|...+.++++-+|++|+|||+.+|. .
T Consensus 51 ~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV-------~ 123 (709)
T 4fn5_A 51 ATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGV-------E 123 (709)
T ss_dssp -----------------CCEEEEEECCTTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCS-------C
T ss_pred ccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCC-------c
Confidence 46899999999999999999999885 588999999999999999999999999999999999998 5
Q ss_pred cchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 76 GQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
.+++..++++...++| .++++||||+..++.
T Consensus 124 ~qT~~v~~~a~~~~lp-~i~~iNKiDr~~a~~ 154 (709)
T 4fn5_A 124 PQSETVWRQANKYGVP-RIVYVNKMDRQGANF 154 (709)
T ss_dssp HHHHHHHHHHHHHTCC-EEEEEECSSSTTCCH
T ss_pred hhHHHHHHHHHHcCCC-eEEEEccccccCccH
Confidence 8999999999999999 699999999876544
No 21
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.83 E-value=6.4e-20 Score=146.37 Aligned_cols=94 Identities=26% Similarity=0.400 Sum_probs=85.5
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|+.+.|+++|+|+......+.+.+..++|||||||.+|...+..+++.+|++|+|+|++.+. ..+....+..
T Consensus 57 ~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~-------~~~t~~~~~~ 129 (528)
T 3tr5_A 57 SDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGV-------EPRTIKLMEV 129 (528)
T ss_dssp HHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCS-------CHHHHHHHHH
T ss_pred cccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCC-------CHHHHHHHHH
Confidence 477788999999999999999999999999999999999999999999999999999999887 4677888888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcc
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
+...++| +++++||+|+....
T Consensus 130 ~~~~~iP-iivviNK~Dl~~~~ 150 (528)
T 3tr5_A 130 CRLRHTP-IMTFINKMDRDTRP 150 (528)
T ss_dssp HHTTTCC-EEEEEECTTSCCSC
T ss_pred HHHcCCC-EEEEEeCCCCcccc
Confidence 8888999 89999999986543
No 22
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.77 E-value=3.5e-18 Score=136.46 Aligned_cols=130 Identities=22% Similarity=0.322 Sum_probs=89.7
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|+.+.|+++|+|+......+.+++..++|||||||.+|...+..+++.+|++|+|+|++++. ..++..++..
T Consensus 57 ~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~-------~~~t~~~~~~ 129 (529)
T 2h5e_A 57 SDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGV-------EDRTRKLMEV 129 (529)
T ss_dssp -------------CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCS-------CHHHHHHHHH
T ss_pred eccchhcccCCcceeeeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccc-------hHHHHHHHHH
Confidence 577889999999999999999999999999999999999999999999999999999999876 4667777777
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...++| +++++||+|+..... .++.+++...+ +.... ...+...||+++.|+.+|.
T Consensus 130 ~~~~~ip-iivviNK~Dl~~~~~-----~~~~~~i~~~l---~~~~~-~~~~pi~sa~~~~Gv~dl~ 186 (529)
T 2h5e_A 130 TRLRDTP-ILTFMNKLDRDIRDP-----MELLDEVENEL---KIGCA-PITWPIGCGKLFKGVYHLY 186 (529)
T ss_dssp HTTTTCC-EEEEEECTTSCCSCH-----HHHHHHHHHHH---CCEEE-ESEEEESCGGGCCEEEETT
T ss_pred HHHcCCC-EEEEEcCcCCccccH-----HHHHHHHHHHh---CCCcc-ceecceecccCcceeeehh
Confidence 7777899 899999999875432 12223333322 32110 1123337999999988774
No 23
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.76 E-value=3.5e-18 Score=132.48 Aligned_cols=109 Identities=28% Similarity=0.347 Sum_probs=85.1
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhH
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSE 109 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~ 109 (156)
..+.+||||||++|...+..++..+|++++|+|++++.. ..++.+++..+...+.+++++++||+|+...
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~------~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~---- 144 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFP------QPQTREHFVALGIIGVKNLIIVQNKVDVVSK---- 144 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSS------CHHHHHHHHHHHHHTCCCEEEEEECGGGSCH----
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCC------cHHHHHHHHHHHHcCCCCEEEEEECccccch----
Confidence 789999999999999999999999999999999998751 2677788887777777559999999998742
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 110 ARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
....+..+++...++..+. .+++++++||++|.|+++|.
T Consensus 145 ~~~~~~~~~i~~~l~~~~~---~~~~ii~vSA~~g~gi~~L~ 183 (403)
T 3sjy_A 145 EEALSQYRQIKQFTKGTWA---ENVPIIPVSALHKINIDSLI 183 (403)
T ss_dssp HHHHHHHHHHHHHHTTSTT---TTCCEEECBTTTTBSHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCC---CCCEEEEEECCCCcChHHHH
Confidence 2233334445555544433 35799999999999998753
No 24
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.76 E-value=8.5e-20 Score=144.48 Aligned_cols=122 Identities=30% Similarity=0.380 Sum_probs=95.7
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCc
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKH 92 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (156)
.+|+|.+.....+.+++..++|||||||++|...+..++..+|++++|+|++++. .+++.+++..+...++|
T Consensus 34 ~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~-------~~qT~e~l~~~~~~~vP- 105 (501)
T 1zo1_I 34 AGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGV-------MPQTIEAIQHAKAAQVP- 105 (501)
T ss_dssp BCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBS-------CTTTHHHHHHHHHTTCC-
T ss_pred CCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCc-------cHHHHHHHHHHHhcCce-
Confidence 4789999888888888999999999999999999999999999999999999887 47888999888888999
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCC---CCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA---KDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++++||+|+...+... +.+.+ ...++.+. ..++++++||++|.|+++|.
T Consensus 106 iIVviNKiDl~~~~~~~-----v~~~l----~~~~~~~~~~~~~~~~v~vSAktG~gI~eLl 158 (501)
T 1zo1_I 106 VVVAVNKIDKPEADPDR-----VKNEL----SQYGILPEEWGGESQFVHVSAKAGTGIDELL 158 (501)
T ss_dssp EEEEEECSSSSTTCCCC-----TTCCC----CCCCCCTTCCSSSCEEEECCTTTCTTCTTHH
T ss_pred EEEEEEeccccccCHHH-----HHHHH----HHhhhhHHHhCCCccEEEEeeeeccCcchhh
Confidence 89999999986432211 01111 11111111 13689999999999998753
No 25
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.76 E-value=2.8e-18 Score=122.76 Aligned_cols=127 Identities=13% Similarity=0.116 Sum_probs=83.5
Q ss_pred cHHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 8 LRQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 8 ~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
+..+..+.+..+.....+..++ ..+.||||||+++|...+..++++++++++|+|.++ ..+|.....|...+...
T Consensus 38 f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~---~~Sf~~i~~~~~~i~~~ 114 (216)
T 4dkx_A 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITN---VNSFQQTTKWIDDVRTE 114 (216)
T ss_dssp CC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTC---HHHHHTHHHHHHHHHHH
T ss_pred CCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecch---hHHHHHHHHHHHHHHHh
Confidence 3445555555555555555544 578999999999999999999999999999999987 44454445555555544
Q ss_pred HHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 86 KTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 86 ~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
...++| +++|+||+|+..... ... ++...+.+.. +++++++||++|+||+++
T Consensus 115 ~~~~~p-iilVgNK~Dl~~~r~--V~~----~e~~~~a~~~------~~~~~e~SAktg~nV~e~ 166 (216)
T 4dkx_A 115 RGSDVI-IMLVGNKTDLADKRQ--VSI----EEGERKAKEL------NVMFIETSAKAGYNVKQL 166 (216)
T ss_dssp HTTSSE-EEEEEECTTCGGGCC--SCH----HHHHHHHHHH------TCEEEEEBTTTTBSHHHH
T ss_pred cCCCCe-EEEEeeccchHhcCc--ccH----HHHhhHHHHh------CCeeEEEeCCCCcCHHHH
Confidence 445677 899999999753211 111 2233344444 358999999999999875
No 26
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.74 E-value=2.2e-17 Score=135.78 Aligned_cols=94 Identities=26% Similarity=0.294 Sum_probs=84.5
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCC-------eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDR-------KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG 76 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~-------~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~ 76 (156)
..|+.+.|+++|+|+......+.+.+ +.++|||||||.+|...+..+++.+|++|+|+|++++. ..
T Consensus 49 ~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-------~~ 121 (704)
T 2rdo_7 49 TMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGV-------QP 121 (704)
T ss_pred eecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCC-------cH
Confidence 36888999999999999999999887 89999999999999999999999999999999999886 46
Q ss_pred chHHHHHHHHHcCCCcEEEEEeCCCCCCc
Q psy10355 77 QTREHAMLAKTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 77 ~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~ 105 (156)
++...+..+...++| +++++||+|+...
T Consensus 122 qt~~~~~~~~~~~ip-~ilviNKiD~~~~ 149 (704)
T 2rdo_7 122 QSETVWRQANKYKVP-RIAFVNKMDRMGA 149 (704)
T ss_pred HHHHHHHHHHHcCCC-EEEEEeCCCcccc
Confidence 777888888888999 7999999998654
No 27
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.72 E-value=4.2e-18 Score=124.74 Aligned_cols=117 Identities=21% Similarity=0.098 Sum_probs=85.1
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHH----------HHHhhh--hcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVP----------NMIGGT--AQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~----------~~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
..+|+|++.....+.+++..+.+|||||+.++.. .+..++ +.+|++++|+|++.. ....
T Consensus 30 ~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~---------~~~~ 100 (256)
T 3iby_A 30 NWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL---------ERHL 100 (256)
T ss_dssp ECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH---------HHHH
T ss_pred CCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc---------hhHH
Confidence 3469999999999999999999999999987753 344455 789999999999762 2344
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
....++...++| +++|+||+|+............ +.+.+ +++++++||++|.|+++|.
T Consensus 101 ~l~~~l~~~~~p-vilv~NK~Dl~~~~~~~~~~~~-------l~~~l------g~~vi~~SA~~g~gi~el~ 158 (256)
T 3iby_A 101 YLTSQLFELGKP-VVVALNMMDIAEHRGISIDTEK-------LESLL------GCSVIPIQAHKNIGIPALQ 158 (256)
T ss_dssp HHHHHHTTSCSC-EEEEEECHHHHHHTTCEECHHH-------HHHHH------CSCEEECBGGGTBSHHHHH
T ss_pred HHHHHHHHcCCC-EEEEEEChhcCCcCCcHHHHHH-------HHHHc------CCCEEEEECCCCCCHHHHH
Confidence 455566667888 8999999997532211111222 22233 4699999999999998764
No 28
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.72 E-value=6.4e-18 Score=116.08 Aligned_cols=122 Identities=30% Similarity=0.362 Sum_probs=88.9
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCc
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKH 92 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (156)
.++++.+.....+..++..+.+|||||++++...+..+++.+|++++|+|++++. ..++.+.+......++|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------~~~~~~~l~~~~~~~~p- 109 (178)
T 2lkc_A 38 AGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGV-------MPQTVEAINHAKAANVP- 109 (178)
T ss_dssp CCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCC-------CHHHHHHHHHHGGGSCC-
T ss_pred CCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCC-------cHHHHHHHHHHHhCCCC-
Confidence 4567777777788889999999999999999888888899999999999998765 24556666666666888
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCC-CC--CCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNA-AK--DLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+.... . .++. ..++..+... .. ..+++++||++|.|+++|.
T Consensus 110 ~ilv~nK~Dl~~~~--~---~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 162 (178)
T 2lkc_A 110 IIVAINKMDKPEAN--P---DRVM----QELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLL 162 (178)
T ss_dssp EEEEEETTTSSCSC--H---HHHH----HHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHH
T ss_pred EEEEEECccCCcCC--H---HHHH----HHHHhcCcChhHcCCcccEEEEecCCCCCHHHHH
Confidence 89999999986421 1 1111 1122222111 11 2589999999999998753
No 29
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.72 E-value=8.1e-17 Score=132.18 Aligned_cols=94 Identities=23% Similarity=0.288 Sum_probs=70.9
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..|+.+.|+++|+|+......+.+++..++|||||||.+|...+..+++.+|++|+|+|++.+. ..++...+.
T Consensus 51 ~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~-------~~~t~~~~~ 123 (691)
T 1dar_A 51 TMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV-------EPQSETVWR 123 (691)
T ss_dssp ----------------CCEEEEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCS-------CHHHHHHHH
T ss_pred eccCchhhhhcccccccceEEEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCc-------chhhHHHHH
Confidence 4688889999999999999999999999999999999999999999999999999999999876 466777788
Q ss_pred HHHHcCCCcEEEEEeCCCCCCc
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~ 105 (156)
.+...++| +++++||+|+...
T Consensus 124 ~~~~~~~p-~ivviNKiD~~~~ 144 (691)
T 1dar_A 124 QAEKYKVP-RIAFANKMDKTGA 144 (691)
T ss_dssp HHHHTTCC-EEEEEECTTSTTC
T ss_pred HHHHcCCC-EEEEEECCCcccC
Confidence 88888999 7999999998754
No 30
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.72 E-value=4.1e-17 Score=112.01 Aligned_cols=127 Identities=12% Similarity=-0.027 Sum_probs=84.5
Q ss_pred HHhhcCceeeeeeEEEEeCC---eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH
Q psy10355 10 QKREKGKTVEVGRAYFETDR---KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK 86 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~---~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.+..++++.+.....+.+++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+....
T Consensus 33 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~ 109 (178)
T 2hxs_A 33 KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQ---SFENLEDWYTVVKKVS 109 (178)
T ss_dssp HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHH
T ss_pred CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHHh
Confidence 45556666666667777765 78999999999999989999999999999999998743 1211122222222211
Q ss_pred H--cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 87 T--AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 87 ~--~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. .+.|++++|+||+|+...... ..+ +...+.+.. +++++++||++|.|++++.
T Consensus 110 ~~~~~~~~iilv~nK~Dl~~~~~~--~~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 164 (178)
T 2hxs_A 110 EESETQPLVALVGNKIDLEHMRTI--KPE----KHLRFCQEN------GFSSHFVSAKTGDSVFLCF 164 (178)
T ss_dssp HHHTCCCEEEEEEECGGGGGGCSS--CHH----HHHHHHHHH------TCEEEEECTTTCTTHHHHH
T ss_pred cccCCCCeEEEEEEcccccccccc--CHH----HHHHHHHHc------CCcEEEEeCCCCCCHHHHH
Confidence 1 256657899999997531110 011 122333333 3589999999999998753
No 31
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.72 E-value=3.5e-17 Score=122.76 Aligned_cols=121 Identities=21% Similarity=0.132 Sum_probs=88.3
Q ss_pred HhhcCceeeeeeEEEEeC-CeEEEEEeCCCCcCh----------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 11 KREKGKTVEVGRAYFETD-RKHFTILDAPGHKSF----------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~-~~~~~iiDtpG~~~~----------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
...+++|.......+..+ +.++.||||||+.++ ...+..+++.+|++++|+|++++. ..+..
T Consensus 39 s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~-------~~~~~ 111 (308)
T 3iev_A 39 SPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGW-------RPRDE 111 (308)
T ss_dssp CSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBS-------CHHHH
T ss_pred CCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCC-------CchhH
Confidence 456788888888888888 999999999999653 367788899999999999998765 24444
Q ss_pred HH-HHHHHHcCCCcEEEEEeCCCCC-CcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 80 EH-AMLAKTAGVKHLVVLINKMDDP-TVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 80 ~~-~~~~~~~~~~~~ivv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.. +..+...+.| +++|+||+|+. .... ... .+..+.+..+ ...+++++||++|.|+++|
T Consensus 112 ~~~~~~l~~~~~p-vilV~NK~Dl~~~~~~----~~~---~~~~l~~~~~----~~~~i~~vSA~~g~gv~~L 172 (308)
T 3iev_A 112 EIYQNFIKPLNKP-VIVVINKIDKIGPAKN----VLP---LIDEIHKKHP----ELTEIVPISALKGANLDEL 172 (308)
T ss_dssp HHHHHHTGGGCCC-EEEEEECGGGSSSGGG----GHH---HHHHHHHHCT----TCCCEEECBTTTTBSHHHH
T ss_pred HHHHHHHHhcCCC-EEEEEECccCCCCHHH----HHH---HHHHHHHhcc----CCCeEEEEeCCCCCCHHHH
Confidence 55 4555566788 89999999986 2211 111 1222223332 1358999999999999875
No 32
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.72 E-value=9.9e-17 Score=110.00 Aligned_cols=124 Identities=18% Similarity=0.153 Sum_probs=81.9
Q ss_pred HhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-
Q psy10355 11 KREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT- 87 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~- 87 (156)
+..++++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+.....
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~ 111 (177)
T 1wms_A 35 QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQ---SFQNLSNWKKEFIYYADV 111 (177)
T ss_dssp ----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHTC
T ss_pred CCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHH---HHHHHHHHHHHHHHHccc
Confidence 3445566666666666666 58999999999999999999999999999999998743 22111223333332222
Q ss_pred ---cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 88 ---AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 88 ---~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.+.| +++|+||+|+....... ++ +..+++.. ..++++++||++|.|++++
T Consensus 112 ~~~~~~p-~i~v~nK~Dl~~~~~~~---~~----~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l 164 (177)
T 1wms_A 112 KEPESFP-FVILGNKIDISERQVST---EE----AQAWCRDN-----GDYPYFETSAKDATNVAAA 164 (177)
T ss_dssp SCTTTSC-EEEEEECTTCSSCSSCH---HH----HHHHHHHT-----TCCCEEECCTTTCTTHHHH
T ss_pred cccCCCc-EEEEEECCcccccccCH---HH----HHHHHHhc-----CCceEEEEeCCCCCCHHHH
Confidence 4567 89999999986322211 12 22233322 2468999999999999875
No 33
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.71 E-value=2.1e-17 Score=129.92 Aligned_cols=126 Identities=20% Similarity=0.253 Sum_probs=91.2
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCC----------CcChHHH-HHhhhhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPG----------HKSFVPN-MIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG----------~~~~~~~-~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
+...|+|.+.....+..++..+.+||||| +++|... ...+++.+|++++|+|++++. ..+..
T Consensus 224 ~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~-------~~~~~ 296 (456)
T 4dcu_A 224 SNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGI-------IEQDK 296 (456)
T ss_dssp CC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCC-------CHHHH
T ss_pred CCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCc-------CHHHH
Confidence 44678999999999999999999999999 5666554 445889999999999998876 35666
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+..+...+.| +++|+||+|+.... ....+++++.+...+...+ ..+++++||++|+|+++|.
T Consensus 297 ~~~~~~~~~~~~-~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~SA~~g~gv~~l~ 360 (456)
T 4dcu_A 297 RIAGYAHEAGKA-VVIVVNKWDAVDKD--ESTMKEFEENIRDHFQFLD-----YAPILFMSALTKKRIHTLM 360 (456)
T ss_dssp HHHHHHHHTTCE-EEEEEECGGGSCCC--SSHHHHHHHHHHHHCGGGT-----TSCEEECCTTTCTTGGGHH
T ss_pred HHHHHHHHcCCC-EEEEEEChhcCCCc--hHHHHHHHHHHHHhcccCC-----CCCEEEEcCCCCcCHHHHH
Confidence 777777778888 89999999986432 2234455555554443332 4689999999999998764
No 34
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.71 E-value=1.1e-17 Score=115.65 Aligned_cols=123 Identities=18% Similarity=0.075 Sum_probs=68.8
Q ss_pred HHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH
Q psy10355 10 QKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT 87 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.+..++++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. +|. .....+..+..
T Consensus 35 ~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~ 108 (183)
T 2fu5_C 35 STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEK---SFD---NIRNWIRNIEE 108 (183)
T ss_dssp -CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHH---HHH---HHHHHHHHHHH
T ss_pred CCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHH---HHH---HHHHHHHHHHH
Confidence 34455566666666666666 78999999999999988899999999999999998743 111 11112222222
Q ss_pred ---cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 88 ---AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 88 ---~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.| +++|+||+|+....... .++ ...+++.. +++++++||++|.|++++.
T Consensus 109 ~~~~~~p-iilv~nK~Dl~~~~~v~--~~~----~~~~~~~~------~~~~~~~Sa~~~~~i~~l~ 162 (183)
T 2fu5_C 109 HASADVE-KMILGNKCDVNDKRQVS--KER----GEKLALDY------GIKFMETSAKANINVENAF 162 (183)
T ss_dssp HSCTTCE-EEEEEEC--CCSCCCSC--HHH----HHHHHHHH------TCEEEECCC---CCHHHHH
T ss_pred hcCCCCC-EEEEEECccCCccCcCC--HHH----HHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 3567 89999999986421110 111 22333443 3589999999999998753
No 35
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.71 E-value=1.4e-16 Score=130.38 Aligned_cols=91 Identities=26% Similarity=0.333 Sum_probs=83.4
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|+.+.|+++|+|+......+.+.+..+++||||||.+|...+..+++.+|++++|+|++.+. ..++...+..
T Consensus 49 ~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~-------~~qt~~~~~~ 121 (665)
T 2dy1_A 49 TDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGV-------QVGTERAWTV 121 (665)
T ss_dssp SCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCS-------CHHHHHHHHH
T ss_pred ccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCccc-------chhHHHHHHH
Confidence 577889999999999999999999999999999999999999999999999999999998887 4677788888
Q ss_pred HHHcCCCcEEEEEeCCCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~ 103 (156)
+...++| +++++||+|+.
T Consensus 122 ~~~~~ip-~ilv~NKiD~~ 139 (665)
T 2dy1_A 122 AERLGLP-RMVVVTKLDKG 139 (665)
T ss_dssp HHHTTCC-EEEEEECGGGC
T ss_pred HHHccCC-EEEEecCCchh
Confidence 8888999 79999999986
No 36
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.71 E-value=4.1e-17 Score=114.94 Aligned_cols=125 Identities=14% Similarity=0.055 Sum_probs=78.3
Q ss_pred HhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc
Q psy10355 11 KREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA 88 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
+..+.++.+.....+.+++ ..+.+|||||++++...+..+++.+|++|+|+|+++.. +|.....+...+......
T Consensus 57 ~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~---s~~~~~~~~~~i~~~~~~ 133 (201)
T 2hup_A 57 RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRS---SFLSVPHWIEDVRKYAGS 133 (201)
T ss_dssp --------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHH---HHHTHHHHHHHHHHHSCT
T ss_pred CCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCC
Confidence 3344445555556666666 58999999999999999999999999999999997642 221112222222221124
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCC-eEEEeecccCCCCccCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDL-SFMPCSGELEKNPLLLG 151 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~Sa~~g~gi~~l~ 151 (156)
+.| +++|+||+|+...... ..+ ++..+++.. ++ +++++||++|+|++++.
T Consensus 134 ~~p-iilv~NK~Dl~~~~~v--~~~----~~~~~~~~~------~~~~~~~~SA~~g~gi~~l~ 184 (201)
T 2hup_A 134 NIV-QLLIGNKSDLSELREV--SLA----EAQSLAEHY------DILCAIETSAKDSSNVEEAF 184 (201)
T ss_dssp TCE-EEEEEECTTCGGGCCS--CHH----HHHHHHHHT------TCSEEEECBTTTTBSHHHHH
T ss_pred CCC-EEEEEECCcccccccc--CHH----HHHHHHHHc------CCCEEEEEeCCCCCCHHHHH
Confidence 567 8999999998531110 111 233334444 34 89999999999998753
No 37
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=2.3e-17 Score=116.58 Aligned_cols=123 Identities=15% Similarity=0.073 Sum_probs=82.2
Q ss_pred hhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC
Q psy10355 12 REKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
..++++.+.....+.+++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+......+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~i~~~~~~~ 125 (213)
T 3cph_A 49 FITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDER---TFTNIKQWFKTVNEHANDE 125 (213)
T ss_dssp SSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHTTTC
T ss_pred cCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCC
Confidence 345666666666777777 67999999999999888889999999999999998743 1111122222222222235
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.| +++|+||+|+......... ...+.+.. +++++++||++|.|++++.
T Consensus 126 ~p-iilv~nK~Dl~~~~~~~~~-------~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 173 (213)
T 3cph_A 126 AQ-LLLVGNKSDMETRVVTADQ-------GEALAKEL------GIPFIESSAKNDDNVNEIF 173 (213)
T ss_dssp SE-EEEEEECTTCSSCCSCHHH-------HHHHHHHH------TCCEEECBTTTTBSSHHHH
T ss_pred CC-EEEEEECCCCcccccCHHH-------HHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 67 8999999998432222211 22233333 3589999999999998753
No 38
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.71 E-value=2.8e-17 Score=114.58 Aligned_cols=125 Identities=18% Similarity=0.131 Sum_probs=85.4
Q ss_pred HHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH
Q psy10355 10 QKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT 87 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.+..++++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+...+.....
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~ 119 (196)
T 3tkl_A 43 ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLQEIDRYAS 119 (196)
T ss_dssp SCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHSC
T ss_pred CCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcC
Confidence 34456777777777777776 57999999999999999999999999999999998743 22212222222222222
Q ss_pred cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 88 AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 88 ~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.+.| +++|+||+|+....... .. ....+.+.. +++++++||++|.|++++
T Consensus 120 ~~~p-~ilv~nK~Dl~~~~~~~--~~----~~~~~~~~~------~~~~~~~Sa~~g~gv~~l 169 (196)
T 3tkl_A 120 ENVN-KLLVGNKCDLTTKKVVD--YT----TAKEFADSL------GIPFLETSAKNATNVEQS 169 (196)
T ss_dssp TTCE-EEEEEECTTCTTTCCSC--HH----HHHHHHHHT------TCCEEEECTTTCTTHHHH
T ss_pred CCCC-EEEEEECcccccccccC--HH----HHHHHHHHc------CCcEEEEeCCCCCCHHHH
Confidence 3667 89999999986432111 11 122333333 468999999999999865
No 39
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.70 E-value=4.6e-17 Score=133.66 Aligned_cols=126 Identities=26% Similarity=0.305 Sum_probs=85.5
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..|+.+.|+++|+|+......+.+++..++|||||||.+|...+..+++.+|++|+|+|++.+. ..++...+.
T Consensus 49 ~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~-------~~~~~~~~~ 121 (693)
T 2xex_A 49 QMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGV-------EPQTETVWR 121 (693)
T ss_dssp ---------------CCSEEEEEETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBS-------CHHHHHHHH
T ss_pred ecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCC-------cHHHHHHHH
Confidence 3578889999999999999999999999999999999999999999999999999999998876 366777777
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
.+...++| +++++||+|+.... ...+.+++...+ +... ...++|+|+ |.|++.
T Consensus 122 ~~~~~~~p-~ilviNK~Dl~~~~-----~~~~~~~l~~~l---~~~~--~~~~ipisa--~~~~~~ 174 (693)
T 2xex_A 122 QATTYGVP-RIVFVNKMDKLGAN-----FEYSVSTLHDRL---QANA--APIQLPIGA--EDEFEA 174 (693)
T ss_dssp HHHHTTCC-EEEEEECTTSTTCC-----HHHHHHHHHHHH---CCCE--EESEEEECC--GGGCCE
T ss_pred HHHHcCCC-EEEEEECCCccccc-----hHHHHHHHHHHh---CCCc--eeEEeeccc--CCCcce
Confidence 78888899 89999999987532 233333444333 2211 124688888 455443
No 40
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.70 E-value=3.8e-19 Score=141.79 Aligned_cols=125 Identities=28% Similarity=0.342 Sum_probs=97.2
Q ss_pred HHhhcCceeeeeeEEEEe-CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc
Q psy10355 10 QKREKGKTVEVGRAYFET-DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA 88 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.+..+|+|.+.....+.+ ++..++|||||||++|...+..+++.+|++++|+|++++. .+++.+++..+...
T Consensus 31 ~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~-------~~qt~e~l~~~~~~ 103 (537)
T 3izy_P 31 AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGV-------MKQTVESIQHAKDA 103 (537)
T ss_dssp HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCC-------CHHHHHHHHHHHTT
T ss_pred cccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCc-------cHHHHHHHHHHHHc
Confidence 345679999988888877 5678999999999999999999999999999999999987 47889999999888
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCC---CCCCeEEEeecccCCCCccCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNA---AKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++| +++++||+|+........ .+.+. ..++.. ...++++++||++|.|+++|.
T Consensus 104 ~vP-iIVViNKiDl~~~~~~~v-----~~~l~----~~~~~~e~~~~~~~iv~vSAktG~GI~eLl 159 (537)
T 3izy_P 104 HVP-IVLAINKCDKAEADPEKV-----KKELL----AYDVVCEDYGGDVQAVHVSALTGENMMALA 159 (537)
T ss_dssp TCC-EEECCBSGGGTTTSCCSS-----SSHHH----HTTSCCCCSSSSEEECCCCSSSSCSSHHHH
T ss_pred CCc-EEEEEecccccccchHHH-----HHHHH----hhhhhHHhcCCCceEEEEECCCCCCchhHH
Confidence 999 899999999864332211 11111 111111 024689999999999998763
No 41
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.70 E-value=3.6e-17 Score=114.33 Aligned_cols=127 Identities=17% Similarity=0.072 Sum_probs=82.2
Q ss_pred HHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH
Q psy10355 10 QKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT 87 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.+..+.++.+.....+..++ ..+.+|||||++++...+..+++.+|++|+|+|+++.. ++.....+...+.....
T Consensus 53 ~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~---s~~~~~~~~~~i~~~~~ 129 (192)
T 2il1_A 53 EACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKE---TFDDLPKWMKMIDKYAS 129 (192)
T ss_dssp ----CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHSC
T ss_pred cCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcC
Confidence 34455666666666666665 57999999999999999999999999999999998743 22111222222222222
Q ss_pred cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 88 AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 88 ~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.| +++|+||+|+...... ..+ +...+.+.. .+.+++++||++|+|++++.
T Consensus 130 ~~~p-iilV~NK~Dl~~~~~v--~~~----~~~~~~~~~-----~~~~~~~~SA~~g~gi~~l~ 181 (192)
T 2il1_A 130 EDAE-LLLVGNKLDCETDREI--TRQ----QGEKFAQQI-----TGMRFCEASAKDNFNVDEIF 181 (192)
T ss_dssp TTCE-EEEEEECGGGGGGCCS--CHH----HHHHHHHTS-----TTCEEEECBTTTTBSHHHHH
T ss_pred CCCc-EEEEEECccccccccc--CHH----HHHHHHHhc-----CCCeEEEEeCCCCCCHHHHH
Confidence 3567 8999999997532111 011 122333332 24689999999999998753
No 42
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.70 E-value=5.5e-17 Score=115.51 Aligned_cols=129 Identities=15% Similarity=0.090 Sum_probs=84.3
Q ss_pred hhcCceeeeeeEEEE-eCCeEEEEEeCCCCcC----------hHHHHHhhhhc---CCEEEEEEeCCCCccccccCCCcc
Q psy10355 12 REKGKTVEVGRAYFE-TDRKHFTILDAPGHKS----------FVPNMIGGTAQ---ADLAVLVISARKGEFETGFDRGGQ 77 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~-~~~~~~~iiDtpG~~~----------~~~~~~~~~~~---~d~~ilvvD~~~~~~~~~~~~~~~ 77 (156)
...|+|.+.....+. .++..+.||||||+.. +...+..+++. +|++++|+|++++. ...
T Consensus 60 ~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~ 132 (223)
T 4dhe_A 60 KTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPL-------TEL 132 (223)
T ss_dssp CCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC-------CHH
T ss_pred CCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCC-------CHH
Confidence 455778887777776 5678999999999633 34445555555 78899999998765 234
Q ss_pred hHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 78 TREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 78 ~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
....+..+...+.| +++|+||+|+............+.+.+..+... +.. ...+++++||++|+|+++|.
T Consensus 133 ~~~~~~~l~~~~~p-~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~-~~~--~~~~~~~~SA~~g~gv~~l~ 202 (223)
T 4dhe_A 133 DRRMIEWFAPTGKP-IHSLLTKCDKLTRQESINALRATQKSLDAYRDA-GYA--GKLTVQLFSALKRTGLDDAH 202 (223)
T ss_dssp HHHHHHHHGGGCCC-EEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH-TCC--SCEEEEEEBTTTTBSHHHHH
T ss_pred HHHHHHHHHhcCCC-EEEEEeccccCChhhHHHHHHHHHHHHHhhhhc-ccC--CCCeEEEeecCCCcCHHHHH
Confidence 45555666667888 899999999864222111222222333222111 111 25689999999999998764
No 43
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.70 E-value=2.2e-17 Score=133.27 Aligned_cols=113 Identities=26% Similarity=0.310 Sum_probs=84.2
Q ss_pred EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh--
Q psy10355 31 HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS-- 108 (156)
Q Consensus 31 ~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~-- 108 (156)
.++|||||||++|...+..+++.+|++|+|+|+++|. .+++.+.+..+...++| +++++||+|+......
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv-------~~qT~e~l~~l~~~~vP-iIVViNKiDl~~~~~~~~ 142 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGF-------KPQTQEALNILRMYRTP-FVVAANKIDRIHGWRVHE 142 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCC-------CHHHHHHHHHHHHTTCC-EEEEEECGGGSTTCCCCT
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc-------cHhHHHHHHHHHHcCCe-EEEEeccccccccccccc
Confidence 5999999999999998889999999999999999987 47888888888888999 8999999998532100
Q ss_pred ------------H---HHHHHHHHHHHHHHHHcCCCC---------CCCCeEEEeecccCCCCccCC
Q psy10355 109 ------------E---ARYNECKDKILPYLKKLGFNA---------AKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ------------~---~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. ..+.+...++...+...++.. ...++++++||++|.|+++|.
T Consensus 143 ~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl 209 (594)
T 1g7s_A 143 GRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELL 209 (594)
T ss_dssp TCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHH
T ss_pred CCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHH
Confidence 0 112222223333444444421 124589999999999998763
No 44
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.70 E-value=1.4e-17 Score=113.30 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=77.3
Q ss_pred HhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc
Q psy10355 11 KREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA 88 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
+..++++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+......
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~ 107 (170)
T 1g16_A 31 SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDER---TFTNIKQWFKTVNEHAND 107 (170)
T ss_dssp -------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHH---HHHTHHHHHHHHHHHSCT
T ss_pred CCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCC
Confidence 3445555555555666654 57999999999999888889999999999999998743 111111222222221123
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+.| +++++||+|+........ ....+.+.. +++++++||++|.|++++.
T Consensus 108 ~~p-iilv~nK~Dl~~~~~~~~-------~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~ 156 (170)
T 1g16_A 108 EAQ-LLLVGNKSDMETRVVTAD-------QGEALAKEL------GIPFIESSAKNDDNVNEIF 156 (170)
T ss_dssp TCE-EEEEEECTTCTTCCSCHH-------HHHHHHHHH------TCCEEECBTTTTBSHHHHH
T ss_pred CCc-EEEEEECccCCcCccCHH-------HHHHHHHHc------CCeEEEEECCCCCCHHHHH
Confidence 567 899999999843222221 122233333 3589999999999998753
No 45
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.70 E-value=9.6e-17 Score=112.12 Aligned_cols=118 Identities=17% Similarity=0.123 Sum_probs=80.6
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc--------
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA-------- 88 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 88 (156)
|++.....+...+..+.+|||||++++...+..+++.+|++|+|+|+++.. +| ......+..+...
T Consensus 50 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---s~---~~~~~~~~~~~~~~~~~~~~~ 123 (199)
T 4bas_A 50 TVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHL---RL---CVVKSEIQAMLKHEDIRRELP 123 (199)
T ss_dssp CSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGG---GH---HHHHHHHHHHHTSHHHHSBCT
T ss_pred ccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHH---HH---HHHHHHHHHHHhChhhhhccc
Confidence 444555667788999999999999999999999999999999999998753 11 1111222222221
Q ss_pred ---CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHH--HHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 89 ---GVKHLVVLINKMDDPTVMWSEARYNECKDKIL--PYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 89 ---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++| +++|+||+|+..... ..++.+.+. .+.+. ..++++++||++|+|++++.
T Consensus 124 ~~~~~p-iilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~g~gv~~l~ 180 (199)
T 4bas_A 124 GGGRVP-FLFFANKMDAAGAKT----AAELVEILDLTTLMGD------HPFVIFASNGLKGTGVHEGF 180 (199)
T ss_dssp TSCBCC-EEEEEECTTSTTCCC----HHHHHHHHTHHHHHTT------SCEEEEECBTTTTBTHHHHH
T ss_pred ccCCCC-EEEEEECcCCCCCCC----HHHHHHHhcchhhccC------CeeEEEEeeCCCccCHHHHH
Confidence 678 899999999864321 122222221 11111 25789999999999998763
No 46
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.70 E-value=4e-18 Score=119.72 Aligned_cols=114 Identities=15% Similarity=0.017 Sum_probs=71.3
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
....+.+|||||++++...+..+++.+|++|+|+|+++.. ++.....+...+......+.| +++|+||+|+.....
T Consensus 75 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~ 150 (199)
T 2p5s_A 75 ERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEK---SFLNIREWVDMIEDAAHETVP-IMLVGNKADIRDTAA 150 (199)
T ss_dssp EEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHC---CC-EEEEEECGGGHHHHH
T ss_pred EEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChH---HHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccc
Confidence 3367999999999999999999999999999999998743 121112222222222223678 899999999742100
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.........+....+.+.. +++++++||++|.|++++.
T Consensus 151 ~~~~~~v~~~~~~~~~~~~------~~~~~~~SA~~g~gv~el~ 188 (199)
T 2p5s_A 151 TEGQKCVPGHFGEKLAMTY------GALFCETSAKDGSNIVEAV 188 (199)
T ss_dssp HTTCCCCCHHHHHHHHHHH------TCEEEECCTTTCTTHHHHH
T ss_pred cccccccCHHHHHHHHHHc------CCeEEEeeCCCCCCHHHHH
Confidence 0000000011222333333 3589999999999998753
No 47
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.70 E-value=4.9e-17 Score=135.91 Aligned_cols=135 Identities=20% Similarity=0.195 Sum_probs=89.7
Q ss_pred cCccccHHHhhcCceeeeeeEEEEeC----------------CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCC
Q psy10355 3 GQGLWLRQKREKGKTVEVGRAYFETD----------------RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66 (156)
Q Consensus 3 ~~~~~~~~e~~~g~t~~~~~~~~~~~----------------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~ 66 (156)
...|+.+.|+++|+|+......+.+. +..++|||||||.+|...+..+++.+|++|+|+|++++
T Consensus 55 ~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g 134 (842)
T 1n0u_A 55 RFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEG 134 (842)
T ss_dssp ------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTB
T ss_pred eeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCC
Confidence 34577889999999999888877765 68899999999999999999999999999999999988
Q ss_pred ccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcc--hh----HHHHHHHHHHHHHHHHHc-----C---CCCCC
Q psy10355 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVM--WS----EARYNECKDKILPYLKKL-----G---FNAAK 132 (156)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~--~~----~~~~~~~~~~~~~~~~~~-----~---~~~~~ 132 (156)
. ..++...+..+...++| +++++||+|+...+ .. ...+....+.+...+... + +.+.
T Consensus 135 ~-------~~qt~~~~~~~~~~~~p-~ilviNK~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~- 205 (842)
T 1n0u_A 135 V-------CVQTETVLRQALGERIK-PVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPA- 205 (842)
T ss_dssp S-------CHHHHHHHHHHHHTTCE-EEEEEECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGG-
T ss_pred C-------CHHHHHHHHHHHHcCCC-eEEEEECCCcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceE-
Confidence 6 36677777777778889 79999999975211 01 112333334444444321 1 2221
Q ss_pred CCeEEEeecccCCC
Q psy10355 133 DLSFMPCSGELEKN 146 (156)
Q Consensus 133 ~~~~i~~Sa~~g~g 146 (156)
..++...||++|.|
T Consensus 206 ~~~v~~~sa~~g~~ 219 (842)
T 1n0u_A 206 RGTVAFGSGLHGWA 219 (842)
T ss_dssp GTCEEEEETTTTEE
T ss_pred EeeeEEeecccccc
Confidence 23577789988754
No 48
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=5.7e-17 Score=114.45 Aligned_cols=123 Identities=15% Similarity=0.051 Sum_probs=81.1
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (156)
.++++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+...+......+.
T Consensus 56 ~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~---s~~~~~~~~~~i~~~~~~~~ 132 (201)
T 2ew1_A 56 GATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEE---SFRCLPEWLREIEQYASNKV 132 (201)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHSCTTC
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCC
Confidence 34455555555666666 57999999999999999999999999999999998743 22211223332222222356
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
| +++|+||+|+...... ..++ ...+.+.. +++++++||++|.|++++.
T Consensus 133 p-iilv~NK~Dl~~~~~v--~~~~----~~~~~~~~------~~~~~~~Sa~~g~gv~~l~ 180 (201)
T 2ew1_A 133 I-TVLVGNKIDLAERREV--SQQR----AEEFSEAQ------DMYYLETSAKESDNVEKLF 180 (201)
T ss_dssp E-EEEEEECGGGGGGCSS--CHHH----HHHHHHHH------TCCEEECCTTTCTTHHHHH
T ss_pred C-EEEEEECCCCcccccc--CHHH----HHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 6 8999999997532111 0111 22233333 3589999999999998753
No 49
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=1e-16 Score=110.17 Aligned_cols=123 Identities=17% Similarity=0.120 Sum_probs=73.3
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (156)
.++++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+......+.
T Consensus 41 ~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~ 117 (180)
T 2g6b_A 41 ISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKA---SFDNIQAWLTEIHEYAQHDV 117 (180)
T ss_dssp CCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHH---HHHTHHHHHHHHHHHSCTTC
T ss_pred CCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhCCCCC
Confidence 44555555555556665 47999999999999999999999999999999998743 11111122222222222456
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
| +++++||+|+....... .++ ...+.+.. +++++++||++|.|++++.
T Consensus 118 p-iilv~nK~Dl~~~~~~~--~~~----~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 165 (180)
T 2g6b_A 118 A-LMLLGNKVDSAHERVVK--RED----GEKLAKEY------GLPFMETSAKTGLNVDLAF 165 (180)
T ss_dssp E-EEEEEECCSTTSCCCSC--HHH----HHHHHHHH------TCCEEECCTTTCTTHHHHH
T ss_pred c-EEEEEECcccCcccccC--HHH----HHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 7 89999999986421111 111 22233333 3589999999999998753
No 50
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.69 E-value=6.5e-17 Score=111.85 Aligned_cols=125 Identities=17% Similarity=0.109 Sum_probs=83.7
Q ss_pred HhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc
Q psy10355 11 KREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA 88 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
+..++++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+......
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~ 114 (186)
T 2bme_A 38 DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE---TYNALTNWLTDARMLASQ 114 (186)
T ss_dssp TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHSCT
T ss_pred CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCC
Confidence 3445566666666666666 57999999999999999999999999999999998743 221112222222322234
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+.| +++|+||+|+...... ...+ ...+.+.. +++++++||++|+|++++.
T Consensus 115 ~~p-iilv~nK~Dl~~~~~~--~~~~----~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 164 (186)
T 2bme_A 115 NIV-IILCGNKKDLDADREV--TFLE----ASRFAQEN------ELMFLETSALTGENVEEAF 164 (186)
T ss_dssp TCE-EEEEEECGGGGGGCCS--CHHH----HHHHHHHT------TCEEEECCTTTCTTHHHHH
T ss_pred CCc-EEEEEECccccccccc--CHHH----HHHHHHHc------CCEEEEecCCCCCCHHHHH
Confidence 667 8999999997532111 1111 22333333 4689999999999998753
No 51
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.69 E-value=3.9e-17 Score=127.71 Aligned_cols=126 Identities=19% Similarity=0.230 Sum_probs=84.9
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCC----------cChHHH-HHhhhhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGH----------KSFVPN-MIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~----------~~~~~~-~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
+..+|+|.+.....+.+++..+.+|||||+ ++|... ...+++.+|++++|+|++++. ..+..
T Consensus 204 ~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~-------s~~~~ 276 (436)
T 2hjg_A 204 SNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGI-------IEQDK 276 (436)
T ss_dssp C---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCC-------CHHHH
T ss_pred cCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCC-------cHHHH
Confidence 446799999999999999999999999998 334333 446889999999999999876 24555
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+..+...+.| +++|+||+|+..... ...++..+++...+... ...+++++||++|+|+++|.
T Consensus 277 ~~~~~~~~~~~~-iiiv~NK~Dl~~~~~--~~~~~~~~~~~~~l~~~-----~~~~~~~~SA~tg~~v~~l~ 340 (436)
T 2hjg_A 277 RIAGYAHEAGKA-VVIVVNKWDAVDKDE--STMKEFEENIRDHFQFL-----DYAPILFMSALTKKRIHTLM 340 (436)
T ss_dssp HHHHHHHHTTCE-EEEEEECGGGSCCCT--THHHHHHHHHHHHCGGG-----TTSCEEECCTTTCTTGGGHH
T ss_pred HHHHHHHHcCCc-EEEEEECccCCCcch--HHHHHHHHHHHHhcccC-----CCCCEEEEecccCCCHHHHH
Confidence 566666667888 899999999864321 12233444444333222 24689999999999999863
No 52
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.69 E-value=7.5e-17 Score=113.28 Aligned_cols=104 Identities=16% Similarity=0.121 Sum_probs=71.2
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---cCCCcEEEEEeCCCCCCc
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT---AGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~NK~Dl~~~ 105 (156)
...+.+|||||++++...+..+++.+|++|+|+|+++.. +|. .....+..+.. .+.| +++|+||+|+...
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~ 128 (203)
T 1zbd_A 56 RIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEE---SFN---AVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDE 128 (203)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHH---HHH---HHHHHHHHHHHHSCSSCE-EEEEEECTTCTTS
T ss_pred EEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhcCCCCC-EEEEEECcccCcc
Confidence 468999999999999999999999999999999998743 111 11112222222 3567 8999999998542
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 106 MWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.... .+ ....+.+.. +++++++||++|.|++++.
T Consensus 129 ~~~~--~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 162 (203)
T 1zbd_A 129 RVVS--SE----RGRQLADHL------GFEFFEASAKDNINVKQTF 162 (203)
T ss_dssp CCSC--HH----HHHHHHHHH------TCEEEECBTTTTBSSHHHH
T ss_pred cccC--HH----HHHHHHHHC------CCeEEEEECCCCCCHHHHH
Confidence 1111 11 122333333 3589999999999997653
No 53
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.68 E-value=5.8e-17 Score=110.68 Aligned_cols=117 Identities=23% Similarity=0.216 Sum_probs=76.4
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcChH------HHHHhhhh--cCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFV------PNMIGGTA--QADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~------~~~~~~~~--~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..+|+|++.....+.+++..+.+|||||++++. .....+++ ++|++++|+|++.. ......+.
T Consensus 32 ~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~---------~~~~~~~~ 102 (165)
T 2wji_A 32 NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---------ERNLYLTL 102 (165)
T ss_dssp -----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH---------HHHHHHHH
T ss_pred CCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch---------hHhHHHHH
Confidence 345778888888888889999999999998764 33445554 89999999999762 12222333
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+...+.| +++|+||+|+........ ....+.+.. +++++++||++|+|++++.
T Consensus 103 ~~~~~~~p-~ilv~nK~Dl~~~~~~~~-------~~~~~~~~~------~~~~~~~SA~~~~~v~~l~ 156 (165)
T 2wji_A 103 QLMEMGAN-LLLALNKMDLAKSLGIEI-------DVDKLEKIL------GVKVVPLSAAKKMGIEELK 156 (165)
T ss_dssp HHHHTTCC-EEEEEECHHHHHHTTCCC-------CHHHHHHHH------TSCEEECBGGGTBSHHHHH
T ss_pred HHHhcCCC-EEEEEEchHhccccChhh-------HHHHHHHHh------CCCEEEEEcCCCCCHHHHH
Confidence 44456788 899999999642110000 112222333 3589999999999998763
No 54
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.68 E-value=6e-17 Score=118.68 Aligned_cols=116 Identities=19% Similarity=0.133 Sum_probs=83.1
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHH------HHHhhh--hcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVP------NMIGGT--AQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~------~~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.+|+|++.....+..++..+.+|||||+.++.. ....++ ..+|++++|+|++... .....+..
T Consensus 35 ~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~---------~~~~~~~~ 105 (258)
T 3a1s_A 35 WPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE---------QSLYLLLE 105 (258)
T ss_dssp CTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH---------HHHHHHHH
T ss_pred CCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh---------hHHHHHHH
Confidence 469999999999999999999999999987643 223444 5799999999997742 23334455
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...++| +++++||+|+......... ...+.+.+ +++++++||++|.|+++|.
T Consensus 106 l~~~~~p-vilv~NK~Dl~~~~~i~~~-------~~~l~~~l------g~~vi~~SA~~g~gi~el~ 158 (258)
T 3a1s_A 106 ILEMEKK-VILAMTAIDEAKKTGMKID-------RYELQKHL------GIPVVFTSSVTGEGLEELK 158 (258)
T ss_dssp HHTTTCC-EEEEEECHHHHHHTTCCBC-------HHHHHHHH------CSCEEECCTTTCTTHHHHH
T ss_pred HHhcCCC-EEEEEECcCCCCccchHHH-------HHHHHHHc------CCCEEEEEeeCCcCHHHHH
Confidence 5567888 8999999997421111111 22223333 3699999999999998764
No 55
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.68 E-value=9.3e-17 Score=120.10 Aligned_cols=116 Identities=18% Similarity=0.145 Sum_probs=83.6
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcC--------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKS--------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~--------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.+++|.+.....+..++.++.||||||+.+ +...+..+++.+|++++|+|++++. .......+..
T Consensus 38 ~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~-------~~~~~~i~~~ 110 (301)
T 1wf3_A 38 RPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPP-------TPEDELVARA 110 (301)
T ss_dssp SSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCC-------CHHHHHHHHH
T ss_pred CCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCC-------ChHHHHHHHH
Confidence 456777766667778899999999999987 5677888999999999999998765 2344445455
Q ss_pred HHHc--CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 85 AKTA--GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 85 ~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+... +.| +++++||+|+..... .+.+.+..+ . ...+++++||++|.|++.|
T Consensus 111 l~~~~~~~p-~ilV~NK~Dl~~~~~------~~~~~~~~~---~-----~~~~~~~iSA~~g~gv~~l 163 (301)
T 1wf3_A 111 LKPLVGKVP-ILLVGNKLDAAKYPE------EAMKAYHEL---L-----PEAEPRMLSALDERQVAEL 163 (301)
T ss_dssp HGGGTTTSC-EEEEEECGGGCSSHH------HHHHHHHHT---S-----TTSEEEECCTTCHHHHHHH
T ss_pred HHhhcCCCC-EEEEEECcccCCchH------HHHHHHHHh---c-----CcCcEEEEeCCCCCCHHHH
Confidence 5555 788 899999999863211 012222221 1 1357999999999988654
No 56
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.68 E-value=2.3e-16 Score=106.88 Aligned_cols=119 Identities=18% Similarity=0.165 Sum_probs=78.6
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 92 (156)
|++.....+..++..+.+|||||++++...+..+++++|++++|+|+++.. +| ......+..... .+.|
T Consensus 31 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p- 103 (164)
T 1r8s_A 31 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE---RV---NEAREELMRMLAEDELRDAV- 103 (164)
T ss_dssp CSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGG---GH---HHHHHHHHHHHTCGGGTTCE-
T ss_pred cCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHH---HH---HHHHHHHHHHHhchhhcCCe-
Confidence 444455567778899999999999999999999999999999999998742 11 111222222222 2567
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++++||+|+..... ..++.+.+ ...... ...++++++||++|.|++++.
T Consensus 104 iilv~nK~Dl~~~~~----~~~~~~~~----~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 104 LLVFANKQDLPNAMN----AAEITDKL----GLHSLR-HRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp EEEEEECTTSTTCCC----HHHHHHHT----TGGGCS-SCCEEEEECBTTTTBTHHHHH
T ss_pred EEEEEECcCCcCCCC----HHHHHHHh----Cccccc-CccEEEEEcccCCCcCHHHHH
Confidence 899999999864211 11222111 111111 125689999999999998753
No 57
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.68 E-value=1.4e-16 Score=107.50 Aligned_cols=117 Identities=23% Similarity=0.278 Sum_probs=80.1
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
+...++|.+.....+..++..+.+|||||+.+ +...+..+++.+|++++|+|++++. .........
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------~~~~~~~~~ 102 (161)
T 2dyk_A 30 ADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAEL-------TQADYEVAE 102 (161)
T ss_dssp --------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCC-------CHHHHHHHH
T ss_pred cCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcc-------cHhHHHHHH
Confidence 44567888888888888999999999999987 4566778889999999999998754 123334445
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+...+.| +++|+||+|+.... +.+..+. ..++ .+++++||++|.|++++.
T Consensus 103 ~~~~~~~p-~ilv~nK~Dl~~~~----------~~~~~~~-~~~~-----~~~~~~Sa~~~~gv~~l~ 153 (161)
T 2dyk_A 103 YLRRKGKP-VILVATKVDDPKHE----------LYLGPLY-GLGF-----GDPIPTSSEHARGLEELL 153 (161)
T ss_dssp HHHHHTCC-EEEEEECCCSGGGG----------GGCGGGG-GGSS-----CSCEECBTTTTBSHHHHH
T ss_pred HHHhcCCC-EEEEEECcccccch----------HhHHHHH-hCCC-----CCeEEEecccCCChHHHH
Confidence 55556788 89999999986321 1111222 2221 278999999999998763
No 58
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.68 E-value=2e-17 Score=122.18 Aligned_cols=117 Identities=20% Similarity=0.194 Sum_probs=83.2
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHH----------HHHhh--hhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVP----------NMIGG--TAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~----------~~~~~--~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
..+|+|++.....+.+.+..+.+|||||+.++.. .+..+ .+.+|++++|+|++.. ....
T Consensus 32 ~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~---------~~~~ 102 (274)
T 3i8s_A 32 NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL---------ERNL 102 (274)
T ss_dssp ECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH---------HHHH
T ss_pred CCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh---------HHHH
Confidence 4569999999999999999999999999987641 12222 2689999999999762 2344
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.....+...++| +++|+||+|+..........+ .+.+.+ +++++++||++|+|+++|.
T Consensus 103 ~~~~~l~~~~~p-~ivv~NK~Dl~~~~~~~~~~~-------~l~~~l------g~~~i~~SA~~g~gi~el~ 160 (274)
T 3i8s_A 103 YLTLQLLELGIP-CIVALNMLDIAEKQNIRIEID-------ALSARL------GCPVIPLVSTRGRGIEALK 160 (274)
T ss_dssp HHHHHHHHHTCC-EEEEEECHHHHHHTTEEECHH-------HHHHHH------TSCEEECCCGGGHHHHHHH
T ss_pred HHHHHHHhcCCC-EEEEEECccchhhhhHHHHHH-------HHHHhc------CCCEEEEEcCCCCCHHHHH
Confidence 455566667899 899999999742211111112 222333 3689999999999998764
No 59
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.68 E-value=2.4e-17 Score=112.12 Aligned_cols=123 Identities=15% Similarity=0.097 Sum_probs=77.9
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT--- 87 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~--- 87 (156)
.+.++.......+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++ ......+..+..
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~ 106 (170)
T 1ek0_A 33 EPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQ---SF---IKARHWVKELHEQAS 106 (170)
T ss_dssp CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHH---HH---HHHHHHHHHHHHHSC
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChH---HH---HHHHHHHHHHHHhcC
Confidence 34444444444455544 57999999999999999999999999999999998743 11 111111222221
Q ss_pred cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 88 AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 88 ~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.| +++++||+|+.......... .+....+.+.. +++++++||++|.|++++.
T Consensus 107 ~~~p-iilv~nK~Dl~~~~~~~~v~---~~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1ek0_A 107 KDII-IALVGNKIDXLQEGGERKVA---REEGEKLAEEK------GLLFFETSAKTGENVNDVF 160 (170)
T ss_dssp TTCE-EEEEEECGGGGGSSCCCCSC---HHHHHHHHHHH------TCEEEECCTTTCTTHHHHH
T ss_pred CCCc-EEEEEECCCccccccccCCC---HHHHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 3566 89999999985321101000 11122233333 3589999999999998753
No 60
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.68 E-value=6.8e-17 Score=112.47 Aligned_cols=106 Identities=13% Similarity=0.110 Sum_probs=72.2
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-----cCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-----AGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ivv~NK~Dl 102 (156)
....+.+|||||++++...+..+++++|++|+|+|++++... ...........++.. .+.| +++|+||+|+
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~---~~~~s~~~l~~~l~~~~~~~~~~p-iilv~NK~Dl 147 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLR---ANAESMRNMRENLAEYGLTLDDVP-IVIQVNKRDL 147 (198)
T ss_dssp CEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHH---HHHHHHHHHHHHHHHTTCCTTSSC-EEEEEECTTS
T ss_pred CceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhh---HhHHHHHHHHHHHHhhccccCCCC-EEEEEEchhc
Confidence 346799999999999999999999999999999999854310 000111122222322 4677 8999999998
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHcCCCCCCCC-eEEEeecccCCCCccCC
Q psy10355 103 PTVMWSEARYNECKDKILPYLKKLGFNAAKDL-SFMPCSGELEKNPLLLG 151 (156)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~Sa~~g~gi~~l~ 151 (156)
.... ..+ ++..+++.. ++ +++++||++|+|++++.
T Consensus 148 ~~~~----~~~----~~~~~~~~~------~~~~~~~~Sa~~~~gv~~l~ 183 (198)
T 3t1o_A 148 PDAL----PVE----MVRAVVDPE------GKFPVLEAVATEGKGVFETL 183 (198)
T ss_dssp TTCC----CHH----HHHHHHCTT------CCSCEEECBGGGTBTHHHHH
T ss_pred cccc----CHH----HHHHHHHhc------CCceEEEEecCCCcCHHHHH
Confidence 6431 112 233333333 34 89999999999998753
No 61
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=2.9e-17 Score=114.70 Aligned_cols=118 Identities=16% Similarity=0.095 Sum_probs=78.0
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---cCCC
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT---AGVK 91 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 91 (156)
|.+.......+......+.+|||||++++...+..+++.+|++++|+|+++... + ......+..+.. .+.|
T Consensus 57 ~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p 130 (192)
T 2fg5_A 57 GASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDS---F---YTLKKWVKELKEHGPENIV 130 (192)
T ss_dssp SEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHH---H---HHHHHHHHHHHHHSCTTCE
T ss_pred ceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhCCCCCc
Confidence 444444444444456789999999999999999999999999999999987531 1 111112222222 2567
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+...... ..+ ++..+++.. +++++++||++|.|++++.
T Consensus 131 -iiiv~NK~Dl~~~~~v--~~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 177 (192)
T 2fg5_A 131 -MAIAGNKCDLSDIREV--PLK----DAKEYAESI------GAIVVETSAKNAINIEELF 177 (192)
T ss_dssp -EEEEEECGGGGGGCCS--CHH----HHHHHHHTT------TCEEEECBTTTTBSHHHHH
T ss_pred -EEEEEECccccccccc--CHH----HHHHHHHHc------CCEEEEEeCCCCcCHHHHH
Confidence 8999999997531110 111 233334433 4689999999999998754
No 62
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.67 E-value=7.5e-17 Score=110.57 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=72.7
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
...+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+......+.| +++++||+|+......
T Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~ 138 (179)
T 1z0f_A 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS---TYNHLSSWLTDARNLTNPNTV-IILIGNKADLEAQRDV 138 (179)
T ss_dssp EEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS
T ss_pred EEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHH---HHHHHHHHHHHHHHhcCCCCc-EEEEEECccccccccc
Confidence 467999999999999999999999999999999998743 111112222222222224667 8999999998532111
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+ ++..+++.. +++++++||++|.|++++.
T Consensus 139 --~~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 169 (179)
T 1z0f_A 139 --TYE----EAKQFAEEN------GLLFLEASAKTGENVEDAF 169 (179)
T ss_dssp --CHH----HHHHHHHHT------TCEEEECCTTTCTTHHHHH
T ss_pred --CHH----HHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 112 233334443 4689999999999998753
No 63
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.67 E-value=3.9e-16 Score=106.31 Aligned_cols=119 Identities=15% Similarity=0.128 Sum_probs=79.7
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 92 (156)
|++.....+.+++..+.+|||||++++...+..+++.+|++++|+|+++.. +| ......+..... .+.|
T Consensus 38 t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p- 110 (171)
T 1upt_A 38 TIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD---RI---GISKSELVAMLEEEELRKAI- 110 (171)
T ss_dssp CSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCT---TH---HHHHHHHHHHHTCGGGTTCE-
T ss_pred cCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHH---HH---HHHHHHHHHHHhchhhCCCE-
Confidence 444555667778999999999999999999999999999999999998753 11 112222222222 3667
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+..... ..++.+.+ ....+. ..+++++++||++|.|++++.
T Consensus 111 iilv~nK~Dl~~~~~----~~~~~~~~----~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 160 (171)
T 1upt_A 111 LVVFANKQDMEQAMT----SSEMANSL----GLPALK-DRKWQIFKTSATKGTGLDEAM 160 (171)
T ss_dssp EEEEEECTTSTTCCC----HHHHHHHH----TGGGCT-TSCEEEEECCTTTCTTHHHHH
T ss_pred EEEEEECCCCcCCCC----HHHHHHHh----Cchhcc-CCceEEEECcCCCCcCHHHHH
Confidence 899999999864311 12222211 111111 125689999999999998753
No 64
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.67 E-value=7.8e-17 Score=110.91 Aligned_cols=120 Identities=15% Similarity=0.108 Sum_probs=78.7
Q ss_pred hcCceeeeeeEEEEeC--CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---
Q psy10355 13 EKGKTVEVGRAYFETD--RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT--- 87 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~--- 87 (156)
.++++.......+..+ ...+.+|||||++++...+..+++.+|++++|+|+++.. +| ......+..+..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~ 115 (181)
T 2efe_B 42 ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQA---SF---ERAKKWVQELQAQGN 115 (181)
T ss_dssp CCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHH---HH---HHHHHHHHHHHHHSC
T ss_pred CCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHH---HH---HHHHHHHHHHHHhcC
Confidence 3444444444445444 458999999999999999999999999999999997743 11 111222222332
Q ss_pred cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 88 AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 88 ~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.| +++|+||+|+...... ..+ ++..+++.. +++++++||++|+|++++.
T Consensus 116 ~~~p-~i~v~nK~Dl~~~~~~--~~~----~~~~~~~~~------~~~~~~~Sa~~g~gi~~l~ 166 (181)
T 2efe_B 116 PNMV-MALAGNKSDLLDARKV--TAE----DAQTYAQEN------GLFFMETSAKTATNVKEIF 166 (181)
T ss_dssp TTCE-EEEEEECTTCTTTCCS--CHH----HHHHHHHHT------TCEEEECCSSSCTTHHHHH
T ss_pred CCCc-EEEEEECCcccccccC--CHH----HHHHHHHHc------CCEEEEEECCCCCCHHHHH
Confidence 2566 8999999998532111 111 233333433 4689999999999998753
No 65
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=2.6e-16 Score=109.27 Aligned_cols=119 Identities=16% Similarity=0.180 Sum_probs=75.6
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 92 (156)
|++.....+.+++..+.+|||||++++...+..+++++|++++|+|+++.. +| ......+..+.. .+.|
T Consensus 47 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p- 119 (187)
T 1zj6_A 47 TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE---RI---SVTREELYKMLAHEDLRKAG- 119 (187)
T ss_dssp CSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTT---TH---HHHHHHHHHHHTSGGGTTCE-
T ss_pred CCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH---HH---HHHHHHHHHHHhchhhCCCe-
Confidence 334455567778899999999999999888899999999999999998753 11 112222222222 3567
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+..... ..++.+ .+....+.. .+++++++||++|+|++++.
T Consensus 120 iilv~NK~Dl~~~~~----~~~i~~----~~~~~~~~~-~~~~~~~~Sa~~g~gi~~l~ 169 (187)
T 1zj6_A 120 LLIFANKQDVKECMT----VAEISQ----FLKLTSIKD-HQWHIQACCALTGEGLCQGL 169 (187)
T ss_dssp EEEEEECTTSTTCCC----HHHHHH----HHTGGGCCS-SCEEEEECBTTTTBTHHHHH
T ss_pred EEEEEECCCCcCCCC----HHHHHH----HhChhhhcC-CCcEEEEccCCCCcCHHHHH
Confidence 899999999864211 122222 221111111 25689999999999998753
No 66
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.67 E-value=7.1e-17 Score=112.29 Aligned_cols=105 Identities=17% Similarity=0.129 Sum_probs=71.9
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---cCCCcEEEEEeCCCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT---AGVKHLVVLINKMDDPT 104 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~NK~Dl~~ 104 (156)
....+.+|||||++++...+..+++.+|++++|+|+++.. ++. .....+..+.. .+.| +++|+||+|+..
T Consensus 69 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 141 (189)
T 2gf9_A 69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQE---SFA---AVQDWATQIKTYSWDNAQ-VILVGNKCDLED 141 (189)
T ss_dssp EEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHH---HHH---THHHHHHHHHHHSCTTCE-EEEEEECTTCGG
T ss_pred eEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCC-EEEEEECccccc
Confidence 3468999999999999888999999999999999997743 111 11222222332 3567 899999999853
Q ss_pred cchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 105 VMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..... . ++...+.+.. +++++++||++|.|++++.
T Consensus 142 ~~~~~--~----~~~~~~~~~~------~~~~~~~Sa~~g~gi~~l~ 176 (189)
T 2gf9_A 142 ERVVP--A----EDGRRLADDL------GFEFFEASAKENINVKQVF 176 (189)
T ss_dssp GCCSC--H----HHHHHHHHHH------TCEEEECBTTTTBSHHHHH
T ss_pred ccCCC--H----HHHHHHHHHc------CCeEEEEECCCCCCHHHHH
Confidence 21110 1 1233333444 3589999999999998764
No 67
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.67 E-value=3.6e-16 Score=122.34 Aligned_cols=118 Identities=21% Similarity=0.280 Sum_probs=81.5
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcC---------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKS---------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~---------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
+..+|+|.+.....+.+++..+.+|||||++. +...+..+++.+|++++|+|++.+. .......
T Consensus 30 ~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~-------~~~d~~i 102 (439)
T 1mky_A 30 EDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGI-------TKEDESL 102 (439)
T ss_dssp --------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCC-------CHHHHHH
T ss_pred cCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCC-------CHHHHHH
Confidence 45679999999999999999999999999864 3556788999999999999998875 2344455
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHH-HHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKI-LPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+...+.| +++|+||+|+.. . . .... ..+. .+++ .+++++||++|.|+++|.
T Consensus 103 ~~~l~~~~~p-~ilv~NK~D~~~----~--~---~~~~~~~~~-~lg~-----~~~~~iSA~~g~gv~~L~ 157 (439)
T 1mky_A 103 ADFLRKSTVD-TILVANKAENLR----E--F---EREVKPELY-SLGF-----GEPIPVSAEHNINLDTML 157 (439)
T ss_dssp HHHHHHHTCC-EEEEEESCCSHH----H--H---HHHTHHHHG-GGSS-----CSCEECBTTTTBSHHHHH
T ss_pred HHHHHHcCCC-EEEEEeCCCCcc----c--c---HHHHHHHHH-hcCC-----CCEEEEeccCCCCHHHHH
Confidence 5556667888 899999999641 1 0 1111 2222 3333 257999999999998753
No 68
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=4.6e-17 Score=113.50 Aligned_cols=121 Identities=15% Similarity=0.087 Sum_probs=80.2
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEE
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLV 94 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (156)
|++.......+......+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+...+......+.| ++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-ii 132 (191)
T 3dz8_A 57 GIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE---SFNAVQDWATQIKTYSWDNAQ-VI 132 (191)
T ss_dssp TTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHH---HHHTHHHHHHHHHHHSCTTCE-EE
T ss_pred eeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCCCCC-EE
Confidence 44455555555556788999999999999999999999999999999998742 222112222222222114667 89
Q ss_pred EEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 95 VLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 95 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|+||+|+....... .. +...+.+.. +++++++||++|.|++++.
T Consensus 133 lv~nK~Dl~~~~~~~--~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 177 (191)
T 3dz8_A 133 LVGNKCDMEEERVVP--TE----KGQLLAEQL------GFDFFEASAKENISVRQAF 177 (191)
T ss_dssp EEEECTTCGGGCCSC--HH----HHHHHHHHH------TCEEEECBTTTTBSHHHHH
T ss_pred EEEECCCCccccccC--HH----HHHHHHHHc------CCeEEEEECCCCCCHHHHH
Confidence 999999985321111 11 122333333 3589999999999998753
No 69
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.67 E-value=1.5e-16 Score=109.03 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=82.5
Q ss_pred hhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC
Q psy10355 12 REKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
..++++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+......+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~ 119 (179)
T 2y8e_A 43 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTN---SFHQTSKWIDDVRTERGSD 119 (179)
T ss_dssp CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHTTS
T ss_pred CCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCC
Confidence 345566666666666666 57999999999999999999999999999999997642 1211122222222222246
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.| +++|+||+|+...... ...+ ...+.+.. +++++++||++|.|++++.
T Consensus 120 ~p-iilv~nK~Dl~~~~~~--~~~~----~~~~~~~~------~~~~~~~Sa~~~~~i~~l~ 168 (179)
T 2y8e_A 120 VI-IMLVGNKTDLSDKRQV--STEE----GERKAKEL------NVMFIETSAKAGYNVKQLF 168 (179)
T ss_dssp SE-EEEEEECGGGGGGCCS--CHHH----HHHHHHHH------TCEEEEEBTTTTBSHHHHH
T ss_pred Cc-EEEEEECCcccccCcC--CHHH----HHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 77 8999999997532111 1111 22223333 3689999999999998753
No 70
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.67 E-value=9.9e-17 Score=112.02 Aligned_cols=120 Identities=22% Similarity=0.200 Sum_probs=80.3
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 92 (156)
|.+.....+.+++..+.+|||||++++...+..+++.+|++++|+|++++. +|. .....+..+. ..+.|
T Consensus 54 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p- 126 (190)
T 1m2o_B 54 TWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE---RFD---EARVELDALFNIAELKDVP- 126 (190)
T ss_dssp CCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGG---GHH---HHHHHHHHHHTCGGGTTCC-
T ss_pred CCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChH---HHH---HHHHHHHHHHcchhhcCCC-
Confidence 455566778888999999999999999888889999999999999998753 111 1111222221 24677
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcC------CCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG------FNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+.... . .++ +...++... +.....++++++||++|+|++++.
T Consensus 127 iilv~NK~Dl~~~~-~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 183 (190)
T 1m2o_B 127 FVILGNKIDAPNAV-S---EAE----LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 183 (190)
T ss_dssp EEEEEECTTSTTCC-C---HHH----HHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCCcCCC-C---HHH----HHHHhCCccccccccccccceEEEEEeECCcCCCHHHHH
Confidence 89999999986421 1 122 222222111 011135689999999999998764
No 71
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.67 E-value=8.5e-17 Score=113.10 Aligned_cols=120 Identities=18% Similarity=0.139 Sum_probs=76.1
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 92 (156)
|++.....+.+++..+.+|||||++++...+..+++++|++++|+|+++.. +|. .....+..+. ..+.|
T Consensus 56 t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~---s~~---~~~~~~~~~~~~~~~~~~p- 128 (198)
T 1f6b_A 56 TLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHE---RLL---ESKEELDSLMTDETIANVP- 128 (198)
T ss_dssp CCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGG---GHH---HHHHHHHHHHTCGGGTTSC-
T ss_pred CCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHH---HHH---HHHHHHHHHHhCcccCCCc-
Confidence 444556677888899999999999999888889999999999999998742 111 1111222221 24678
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcC---------CC--CCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG---------FN--AAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+... .. .++ +...+.... +. ....++++++||++|+|++++.
T Consensus 129 iilv~NK~Dl~~~-~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~ 190 (198)
T 1f6b_A 129 ILILGNKIDRPEA-IS---EER----LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 190 (198)
T ss_dssp EEEEEECTTSTTC-CC---HHH----HHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCcccc-CC---HHH----HHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHH
Confidence 8999999998642 11 122 222222111 00 0124689999999999998753
No 72
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.67 E-value=4.3e-16 Score=108.37 Aligned_cols=121 Identities=12% Similarity=0.059 Sum_probs=81.7
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH------c
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT------A 88 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~------~ 88 (156)
..|++.....+.+++..+.+|||||++++...+..+++++|++++|+|+++.. +| ......+..+.. .
T Consensus 52 ~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~ 125 (190)
T 2h57_A 52 LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRL---RM---VVAKEELDTLLNHPDIKHR 125 (190)
T ss_dssp CCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHH---HH---HHHHHHHHHHHHSTTTTTS
T ss_pred CCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHH---HH---HHHHHHHHHHHhChhhccC
Confidence 44556666677788899999999999999999999999999999999997742 11 111122222222 3
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+.| +++|+||+|+..... .+++++ .+....+.. .+++++++||++|+|++++.
T Consensus 126 ~~p-iilv~nK~Dl~~~~~----~~~~~~----~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~ 178 (190)
T 2h57_A 126 RIP-ILFFANKMDLRDAVT----SVKVSQ----LLCLENIKD-KPWHICASDAIKGEGLQEGV 178 (190)
T ss_dssp CCC-EEEEEECTTSTTCCC----HHHHHH----HHTGGGCCS-SCEEEEECBTTTTBTHHHHH
T ss_pred CCe-EEEEEeCcCcccCCC----HHHHHH----HhChhhccC-CceEEEEccCCCCcCHHHHH
Confidence 677 899999999864211 122222 221111111 25689999999999998763
No 73
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.67 E-value=6.9e-17 Score=109.89 Aligned_cols=121 Identities=17% Similarity=0.096 Sum_probs=76.1
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEE
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLV 94 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (156)
|.+.......+......+.+|||||++++...+..+++.+|++++|+|+++... +.....+...+......+.| ++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~l~~~~~~~~~-ii 115 (170)
T 1z0j_A 40 GASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEET---FSTLKNWVRELRQHGPPSIV-VA 115 (170)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHH---HHHHHHHHHHHHHHSCTTSE-EE
T ss_pred eEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHH---HHHHHHHHHHHHHhCCCCCc-EE
Confidence 333333333333344789999999999999999999999999999999987431 11011111222211123456 88
Q ss_pred EEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 95 VLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 95 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++||+|+....... .+....+.+.. +.+++++||++|.|++++.
T Consensus 116 lv~nK~Dl~~~~~v~------~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~ 160 (170)
T 1z0j_A 116 IAGNKCDLTDVREVM------ERDAKDYADSI------HAIFVETSAKNAININELF 160 (170)
T ss_dssp EEEECTTCGGGCCSC------HHHHHHHHHHT------TCEEEECBTTTTBSHHHHH
T ss_pred EEEECCccccccccC------HHHHHHHHHHc------CCEEEEEeCCCCcCHHHHH
Confidence 999999985321110 11222333333 4689999999999998763
No 74
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.66 E-value=9.8e-17 Score=113.01 Aligned_cols=124 Identities=15% Similarity=0.040 Sum_probs=80.4
Q ss_pred hhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC
Q psy10355 12 REKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
..++++.+.....+..++ ..+.+|||||++++...+..+++.+|++|+|+|+++.. ++.....+...+......+
T Consensus 37 ~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~---s~~~~~~~~~~i~~~~~~~ 113 (206)
T 2bcg_Y 37 YISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQE---SFNGVKMWLQEIDRYATST 113 (206)
T ss_dssp CCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHSCTT
T ss_pred CCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCCC
Confidence 345555555555666665 47999999999999888999999999999999998743 1111111122221111234
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.| +++|+||+|+...... ..++ ...+.+.. +++++++||++|.|++++.
T Consensus 114 ~p-iilv~nK~Dl~~~~~~--~~~~----~~~~~~~~------~~~~~~~Sa~~g~gi~~l~ 162 (206)
T 2bcg_Y 114 VL-KLLVGNKCDLKDKRVV--EYDV----AKEFADAN------KMPFLETSALDSTNVEDAF 162 (206)
T ss_dssp CE-EEEEEECTTCTTTCCS--CHHH----HHHHHHHT------TCCEEECCTTTCTTHHHHH
T ss_pred CC-EEEEEECCCCcccccc--CHHH----HHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 66 8999999998642111 1111 22233333 4689999999999998753
No 75
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.66 E-value=1.2e-16 Score=112.41 Aligned_cols=123 Identities=16% Similarity=0.130 Sum_probs=80.2
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT--- 87 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~--- 87 (156)
.++++.+.....+..++ ..+.+|||||++++...+..+++.+|++|+|+|+++.. ++.....+...+.....
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~ 114 (207)
T 1vg8_A 38 KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPN---TFKTLDSWRDEFLIQASPRD 114 (207)
T ss_dssp CCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHCCSS
T ss_pred CCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHH---HHHHHHHHHHHHHHhccccc
Confidence 34555555555565554 67999999999999888889999999999999998743 11111122222222221
Q ss_pred -cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 88 -AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 88 -~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.| +++|+||+|+....... ++ +..+.... ..++++++||++|.|++++.
T Consensus 115 ~~~~p-iilv~nK~Dl~~~~~~~---~~----~~~~~~~~-----~~~~~~~~Sa~~g~gi~~l~ 166 (207)
T 1vg8_A 115 PENFP-FVVLGNKIDLENRQVAT---KR----AQAWCYSK-----NNIPYFETSAKEAINVEQAF 166 (207)
T ss_dssp GGGSC-EEEEEECTTSSCCCSCH---HH----HHHHHHHT-----TSCCEEECBTTTTBSHHHHH
T ss_pred CCCCc-EEEEEECCCCcccccCH---HH----HHHHHHhc-----CCceEEEEeCCCCCCHHHHH
Confidence 3677 89999999986322211 11 22222211 25689999999999998753
No 76
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.66 E-value=2.9e-16 Score=108.54 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=78.0
Q ss_pred eeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCcEE
Q psy10355 19 EVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKHLV 94 (156)
Q Consensus 19 ~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i 94 (156)
+.....+.+++..+.+|||||++++...+..+++.+|++++|+|+++.. +| ......+..+. ..+.| ++
T Consensus 54 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-ii 126 (181)
T 2h17_A 54 GSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE---RI---SVTREELYKMLAHEDLRKAG-LL 126 (181)
T ss_dssp SSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTT---TH---HHHHHHHHHHHTCGGGTTCE-EE
T ss_pred ceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH---HH---HHHHHHHHHHHhChhhCCCe-EE
Confidence 3444566778899999999999999988999999999999999998753 11 11222222222 24567 89
Q ss_pred EEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 95 VLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 95 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|+||+|+..... ..++. ..+...... ..+++++++||++|+|++++.
T Consensus 127 lv~NK~Dl~~~~~----~~~i~----~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~ 174 (181)
T 2h17_A 127 IFANKQDVKECMT----VAEIS----QFLKLTSIK-DHQWHIQACCALTGEGLCQGL 174 (181)
T ss_dssp EEEECTTSTTCCC----HHHHH----HHTTGGGCC-SSCEEEEECBTTTTBTHHHHH
T ss_pred EEEECCCcccCCC----HHHHH----HHhCccccc-CCceEEEEccCCCCcCHHHHH
Confidence 9999999864211 11222 111111111 125689999999999998753
No 77
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.66 E-value=4.9e-16 Score=108.10 Aligned_cols=119 Identities=16% Similarity=0.128 Sum_probs=79.0
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 92 (156)
|+......+...+..+.+|||||++++...+..+++.+|++++|+|+++.. ++ ......+..+.. .+.|
T Consensus 54 t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---s~---~~~~~~~~~~~~~~~~~~~p- 126 (188)
T 1zd9_A 54 TVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQE---KI---EASKNELHNLLDKPQLQGIP- 126 (188)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGG---GH---HHHHHHHHHHHTCGGGTTCC-
T ss_pred CCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHH---HH---HHHHHHHHHHHhCcccCCCC-
Confidence 444445567788999999999999999999999999999999999997742 11 111222222221 4677
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+..... ..++.+.+ ...... ...++++++||++|.|++++.
T Consensus 127 iilv~NK~Dl~~~~~----~~~~~~~~----~~~~~~-~~~~~~~~~SA~~g~gv~~l~ 176 (188)
T 1zd9_A 127 VLVLGNKRDLPGALD----EKELIEKM----NLSAIQ-DREICCYSISCKEKDNIDITL 176 (188)
T ss_dssp EEEEEECTTSTTCCC----HHHHHHHT----TGGGCC-SSCEEEEECCTTTCTTHHHHH
T ss_pred EEEEEECCCCccCCC----HHHHHHHh----Chhhhc-cCCeeEEEEECCCCCCHHHHH
Confidence 899999999864211 11111111 111111 135689999999999998753
No 78
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.66 E-value=7.5e-17 Score=109.60 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=73.9
Q ss_pred eeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---cCCCcEEEE
Q psy10355 20 VGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT---AGVKHLVVL 96 (156)
Q Consensus 20 ~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv 96 (156)
.....+...+..+.+|||||++++...+..+++.+|++++|+|+++.. ++ ......+..+.. .++| ++++
T Consensus 45 ~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~-iilv 117 (170)
T 1r2q_A 45 TQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEE---SF---ARAKNWVKELQRQASPNIV-IALS 117 (170)
T ss_dssp EEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHH---HH---HHHHHHHHHHHHHSCTTCE-EEEE
T ss_pred EEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHH---HH---HHHHHHHHHHHHhcCCCCc-EEEE
Confidence 333333334568999999999999999999999999999999997743 11 111122222222 3566 8899
Q ss_pred EeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 97 INKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 97 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+||+|+...... ..++ ...+.... +++++++||++|.|++++.
T Consensus 118 ~nK~Dl~~~~~~--~~~~----~~~~~~~~------~~~~~~~Sa~~g~gi~~l~ 160 (170)
T 1r2q_A 118 GNKADLANKRAV--DFQE----AQSYADDN------SLLFMETSAKTSMNVNEIF 160 (170)
T ss_dssp EECGGGGGGCCS--CHHH----HHHHHHHT------TCEEEECCTTTCTTHHHHH
T ss_pred EECccCcccccc--CHHH----HHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 999997532111 1111 22333333 4689999999999998753
No 79
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.66 E-value=4.6e-16 Score=107.58 Aligned_cols=118 Identities=15% Similarity=0.133 Sum_probs=73.9
Q ss_pred eeeeeeEEEEeCCe--EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-HHcCCCcE
Q psy10355 17 TVEVGRAYFETDRK--HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-KTAGVKHL 93 (156)
Q Consensus 17 t~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 93 (156)
+.......+..++. .+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+... ...+.| +
T Consensus 37 ~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~ 112 (189)
T 4dsu_A 37 IEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK---SFEDIHHYREQIKRVKDSEDVP-M 112 (189)
T ss_dssp CCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHTTCSCCC-E
T ss_pred chheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-E
Confidence 33344444555554 4788999999999999999999999999999998742 111111122222111 123677 8
Q ss_pred EEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 94 VVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 94 ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++|+||+|+......... ...+.+.. +++++++||++|.|++++.
T Consensus 113 i~v~nK~Dl~~~~~~~~~-------~~~~~~~~------~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 113 VLVGNKCDLPSRTVDTKQ-------AQDLARSY------GIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp EEEEECTTSSSCSSCHHH-------HHHHHHHH------TCCEEECCTTTCTTHHHHH
T ss_pred EEEEECccCcccccCHHH-------HHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 999999998643322222 22233333 3589999999999998753
No 80
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.66 E-value=1.5e-16 Score=110.91 Aligned_cols=122 Identities=20% Similarity=0.127 Sum_probs=77.3
Q ss_pred cCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCC
Q psy10355 14 KGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVK 91 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (156)
+.++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+......+.|
T Consensus 52 ~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~l~~i~~~~~~~~p 128 (191)
T 2a5j_A 52 LTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLTSWLEDARQHSSSNMV 128 (191)
T ss_dssp --CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHSCTTCE
T ss_pred CcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCC
Confidence 3344444444555555 58999999999999888889999999999999998743 111111222222211123667
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+...... ..+ +...+.+.. +++++++||++|+|++++.
T Consensus 129 -iilv~nK~Dl~~~~~v--~~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 175 (191)
T 2a5j_A 129 -IMLIGNKSDLESRRDV--KRE----EGEAFAREH------GLIFMETSAKTACNVEEAF 175 (191)
T ss_dssp -EEEEEECTTCGGGCCS--CHH----HHHHHHHHH------TCEEEEECTTTCTTHHHHH
T ss_pred -EEEEEECcccCCcccc--CHH----HHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 8999999998532111 111 122333333 3589999999999998753
No 81
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.66 E-value=2.3e-16 Score=108.44 Aligned_cols=126 Identities=17% Similarity=0.112 Sum_probs=69.8
Q ss_pred hhcCceeeeeeEEEEeC---CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-
Q psy10355 12 REKGKTVEVGRAYFETD---RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT- 87 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~- 87 (156)
..++++.+.....+..+ ...+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+.....
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~ 113 (182)
T 1ky3_A 37 YKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNAS---SFENIKSWRDEFLVHANV 113 (182)
T ss_dssp C---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHH---HHHTHHHHHHHHHHHHCC
T ss_pred cCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChH---HHHHHHHHHHHHHHHhcc
Confidence 34445555555555554 367999999999999999999999999999999998743 11111222222222221
Q ss_pred ---cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 88 ---AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 88 ---~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.| +++++||+|+....... ..+ +...+.+.. ...+++++||++|+|++++.
T Consensus 114 ~~~~~~p-~ilv~nK~Dl~~~~~~v-~~~----~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~ 169 (182)
T 1ky3_A 114 NSPETFP-FVILGNKIDAEESKKIV-SEK----SAQELAKSL-----GDIPLFLTSAKNAINVDTAF 169 (182)
T ss_dssp SCTTTCC-EEEEEECTTSCGGGCCS-CHH----HHHHHHHHT-----TSCCEEEEBTTTTBSHHHHH
T ss_pred cCcCCCc-EEEEEECCccccccccC-CHH----HHHHHHHhc-----CCCeEEEEecCCCCCHHHHH
Confidence 4667 89999999985321100 011 122222322 24689999999999998753
No 82
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.66 E-value=3e-16 Score=108.66 Aligned_cols=114 Identities=14% Similarity=0.123 Sum_probs=75.7
Q ss_pred eEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-H---HcCCCcEEEEE
Q psy10355 22 RAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-K---TAGVKHLVVLI 97 (156)
Q Consensus 22 ~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~ivv~ 97 (156)
...+.+++..+.+|||||++++...+..+++.+|++++|+|+++.. +| ......+..+ . ..+.| +++++
T Consensus 52 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-iilv~ 124 (181)
T 1fzq_A 52 IKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRK---RF---EETGQELTELLEEEKLSCVP-VLIFA 124 (181)
T ss_dssp EEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGG---GH---HHHHHHHHHHTTCGGGTTCC-EEEEE
T ss_pred EEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHH---HH---HHHHHHHHHHHhChhhcCCC-EEEEE
Confidence 3456677899999999999999999999999999999999998742 11 1111122211 1 24577 89999
Q ss_pred eCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 98 NKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 98 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
||+|+..... ..++.+.+ ..... ....++++++||++|+|++++.
T Consensus 125 NK~Dl~~~~~----~~~~~~~~----~~~~~-~~~~~~~~~~Sa~~g~gi~~l~ 169 (181)
T 1fzq_A 125 NKQDLLTAAP----ASEIAEGL----NLHTI-RDRVWQIQSCSALTGEGVQDGM 169 (181)
T ss_dssp ECTTSTTCCC----HHHHHHHT----TGGGC-CSSCEEEEECCTTTCTTHHHHH
T ss_pred ECcCcccCCC----HHHHHHHh----Cchhc-cCCceEEEEccCCCCCCHHHHH
Confidence 9999864321 12222111 11111 1125689999999999998753
No 83
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.66 E-value=2.5e-16 Score=108.13 Aligned_cols=124 Identities=15% Similarity=0.109 Sum_probs=83.7
Q ss_pred HHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH
Q psy10355 9 RQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK 86 (156)
Q Consensus 9 ~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
..+..++++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|++++. ++. .....+..+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~ 108 (181)
T 3tw8_B 35 SGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAE---SFV---NVKRWLHEIN 108 (181)
T ss_dssp --CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHH---HHH---HHHHHHHHHH
T ss_pred CCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHH---HHH---HHHHHHHHHH
Confidence 345566777777777777777 67999999999999888999999999999999998743 111 1111222222
Q ss_pred H--cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 87 T--AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 87 ~--~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. .+.| +++|+||+|+....... .. ....+.... +++++++||++|.|++++.
T Consensus 109 ~~~~~~p-~ilv~nK~Dl~~~~~~~--~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 162 (181)
T 3tw8_B 109 QNCDDVC-RILVGNKNDDPERKVVE--TE----DAYKFAGQM------GIQLFETSAKENVNVEEMF 162 (181)
T ss_dssp HHCTTSE-EEEEEECTTCGGGCCSC--HH----HHHHHHHHH------TCCEEECBTTTTBSHHHHH
T ss_pred HhCCCCC-EEEEEECCCCchhcccC--HH----HHHHHHHHc------CCeEEEEECCCCCCHHHHH
Confidence 2 2466 89999999975322111 11 122233333 3589999999999998753
No 84
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.65 E-value=5.3e-16 Score=108.10 Aligned_cols=120 Identities=14% Similarity=0.166 Sum_probs=76.7
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCC----------CcChHHHHHhhhhcC---CEEEEEEeCCCCccccccCCCcch
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPG----------HKSFVPNMIGGTAQA---DLAVLVISARKGEFETGFDRGGQT 78 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG----------~~~~~~~~~~~~~~~---d~~ilvvD~~~~~~~~~~~~~~~~ 78 (156)
...|.|.......+ +..+.+||||| ++.+...+..+++.+ |++++|+|++++. ....
T Consensus 54 ~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------~~~~ 123 (195)
T 1svi_A 54 SKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAP-------SNDD 123 (195)
T ss_dssp ------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC-------CHHH
T ss_pred CCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCC-------CHHH
Confidence 34566665554433 34799999999 555666677777776 9999999998765 2333
Q ss_pred HHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 79 REHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 79 ~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+..+...+.| +++|+||+|+..... .....+++...+ +.. ...+++++||++|.|++++.
T Consensus 124 ~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~----~~~~~~~~~~~~---~~~--~~~~~~~~Sa~~~~gv~~l~ 186 (195)
T 1svi_A 124 VQMYEFLKYYGIP-VIVIATKADKIPKGK----WDKHAKVVRQTL---NID--PEDELILFSSETKKGKDEAW 186 (195)
T ss_dssp HHHHHHHHHTTCC-EEEEEECGGGSCGGG----HHHHHHHHHHHH---TCC--TTSEEEECCTTTCTTHHHHH
T ss_pred HHHHHHHHHcCCC-EEEEEECcccCChHH----HHHHHHHHHHHH---ccc--CCCceEEEEccCCCCHHHHH
Confidence 4455666667788 899999999864221 222223333222 211 25799999999999998764
No 85
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.65 E-value=1.5e-16 Score=111.79 Aligned_cols=122 Identities=20% Similarity=0.163 Sum_probs=67.6
Q ss_pred HhhcCceeeeeeEEEEeC----CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH
Q psy10355 11 KREKGKTVEVGRAYFETD----RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK 86 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~----~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
+....+..+.....+.++ ...+.+|||||++++...+..+++.+|++++|+|+++.. +|. .....+..+.
T Consensus 50 ~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~ 123 (208)
T 2yc2_C 50 DYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSME---SFE---SCKAWFELLK 123 (208)
T ss_dssp -----------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHH---HHH---HHHHHHHHHH
T ss_pred CCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHH---HHH---HHHHHHHHHH
Confidence 333444445556666666 458999999999999999999999999999999998743 111 1112222222
Q ss_pred H------cCCCcEEEEEeCCCCCC-cchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeeccc-CCCCccCC
Q psy10355 87 T------AGVKHLVVLINKMDDPT-VMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGEL-EKNPLLLG 151 (156)
Q Consensus 87 ~------~~~~~~ivv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~-g~gi~~l~ 151 (156)
. .+.| +++|+||+|+.. .... . .+++..+++.. +++++++||++ |.|++++.
T Consensus 124 ~~~~~~~~~~p-iilv~nK~Dl~~~~~~v--~----~~~~~~~~~~~------~~~~~~~Sa~~~~~gi~~l~ 183 (208)
T 2yc2_C 124 SARPDRERPLR-AVLVANKTDLPPQRHQV--R----LDMAQDWATTN------TLDFFDVSANPPGKDADAPF 183 (208)
T ss_dssp HHCSCTTSCCE-EEEEEECC-------CC--C----HHHHHHHHHHT------TCEEEECCC-------CHHH
T ss_pred HhhcccccCCc-EEEEEECcccchhhccC--C----HHHHHHHHHHc------CCEEEEeccCCCCcCHHHHH
Confidence 2 3667 899999999863 1110 0 12233344444 36899999999 99998763
No 86
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.65 E-value=1.4e-16 Score=117.35 Aligned_cols=117 Identities=18% Similarity=0.156 Sum_probs=83.3
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHH------HHHhhh--hcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVP------NMIGGT--AQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~------~~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..+|+|++.....+.+++..+.+|||||+.++.. .+..++ .++|++++|+|++.. .+....+.
T Consensus 32 ~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~---------~~~~~~~~ 102 (271)
T 3k53_A 32 NWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL---------MRNLFLTL 102 (271)
T ss_dssp ECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH---------HHHHHHHH
T ss_pred CCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc---------hhhHHHHH
Confidence 4578999999999999999999999999987754 344444 679999999999763 23344445
Q ss_pred HHHHcC-CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAG-VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~-~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+...+ .| +++++||+|+............ +.+.+ +++++++||++|.|++++.
T Consensus 103 ~~~~~~~~p-~ilv~NK~Dl~~~~~~~~~~~~-------l~~~l------g~~~~~~Sa~~g~gi~~l~ 157 (271)
T 3k53_A 103 ELFEMEVKN-IILVLNKFDLLKKKGAKIDIKK-------MRKEL------GVPVIPTNAKKGEGVEELK 157 (271)
T ss_dssp HHHHTTCCS-EEEEEECHHHHHHHTCCCCHHH-------HHHHH------SSCEEECBGGGTBTHHHHH
T ss_pred HHHhcCCCC-EEEEEEChhcCcccccHHHHHH-------HHHHc------CCcEEEEEeCCCCCHHHHH
Confidence 555566 78 8999999996421111111122 22233 3689999999999987653
No 87
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.65 E-value=5e-16 Score=107.56 Aligned_cols=119 Identities=17% Similarity=0.169 Sum_probs=78.7
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 92 (156)
|++.....+..++..+.+|||||++++...+..+++.+|++++|+|+++.. +| ......+..+.. .+.|
T Consensus 49 t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p- 121 (186)
T 1ksh_A 49 TLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQ---RM---QDCQRELQSLLVEERLAGAT- 121 (186)
T ss_dssp CSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGG---GH---HHHHHHHHHHHTCGGGTTCE-
T ss_pred cCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHH---HH---HHHHHHHHHHHhChhcCCCc-
Confidence 344445566778999999999999999988999999999999999998743 11 111122222222 3567
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+..... ..++.+.+ ...... ..+++++++||++|+|++++.
T Consensus 122 iilv~nK~Dl~~~~~----~~~~~~~~----~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 171 (186)
T 1ksh_A 122 LLIFANKQDLPGALS----CNAIQEAL----ELDSIR-SHHWRIQGCSAVTGEDLLPGI 171 (186)
T ss_dssp EEEEEECTTSTTCCC----HHHHHHHT----TGGGCC-SSCEEEEECCTTTCTTHHHHH
T ss_pred EEEEEeCccCCCCCC----HHHHHHHh----Chhhcc-CCceEEEEeeCCCCCCHHHHH
Confidence 899999999864211 12222211 111011 135689999999999998753
No 88
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=2.5e-16 Score=109.53 Aligned_cols=116 Identities=17% Similarity=0.167 Sum_probs=75.5
Q ss_pred CceeeeeeEEEEeC--CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----c
Q psy10355 15 GKTVEVGRAYFETD--RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----A 88 (156)
Q Consensus 15 g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~ 88 (156)
.++.+.....+..+ ...+.+|||||++++...+..+++.+|++++|+|+++.. ++. .....+..+.. .
T Consensus 47 t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~ 120 (195)
T 1x3s_A 47 TIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRD---TFV---KLDNWLNELETYCTRN 120 (195)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHH---HHH---THHHHHHHHTTCCSCS
T ss_pred ccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhcCcC
Confidence 33333333344443 467999999999999888999999999999999997743 111 11112222222 2
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+.| +++|+||+|+....... ++ ...+++.. +++++++||++|.|++++
T Consensus 121 ~~p-~ilv~nK~Dl~~~~~~~---~~----~~~~~~~~------~~~~~~~Sa~~~~gi~~l 168 (195)
T 1x3s_A 121 DIV-NMLVGNKIDKENREVDR---NE----GLKFARKH------SMLFIEASAKTCDGVQCA 168 (195)
T ss_dssp CCE-EEEEEECTTSSSCCSCH---HH----HHHHHHHT------TCEEEECCTTTCTTHHHH
T ss_pred CCc-EEEEEECCcCcccccCH---HH----HHHHHHHc------CCEEEEecCCCCCCHHHH
Confidence 456 89999999985322211 11 22333333 468999999999998765
No 89
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.65 E-value=5.9e-16 Score=108.24 Aligned_cols=119 Identities=16% Similarity=0.121 Sum_probs=73.6
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 92 (156)
|++.....+..++..+.+|||||++++...+..+++.+|++++|+|+++.. +| ......+..+.. .+.|
T Consensus 60 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~---s~---~~~~~~l~~~~~~~~~~~~p- 132 (192)
T 2b6h_A 60 TIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE---RV---QESADELQKMLQEDELRDAV- 132 (192)
T ss_dssp ETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGG---GH---HHHHHHHHHHHTCGGGTTCE-
T ss_pred cCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH---HH---HHHHHHHHHHhcccccCCCe-
Confidence 334445567778899999999999999888999999999999999998742 11 111222222221 2567
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+..... ..++.+.+ ...... ...++++++||++|.|++++.
T Consensus 133 iilv~NK~Dl~~~~~----~~~i~~~~----~~~~~~-~~~~~~~~~SA~~g~gi~~l~ 182 (192)
T 2b6h_A 133 LLVFANKQDMPNAMP----VSELTDKL----GLQHLR-SRTWYVQATCATQGTGLYDGL 182 (192)
T ss_dssp EEEEEECTTSTTCCC----HHHHHHHT----TGGGCS-SCCEEEEECBTTTTBTHHHHH
T ss_pred EEEEEECCCCCCCCC----HHHHHHHh----Cccccc-CCceEEEECcCCCcCCHHHHH
Confidence 899999999864211 12222111 111111 125689999999999998753
No 90
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.65 E-value=1.3e-16 Score=108.69 Aligned_cols=123 Identities=13% Similarity=0.033 Sum_probs=73.5
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (156)
.++++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+......+.
T Consensus 36 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~ 112 (170)
T 1z08_A 36 ITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDED---SFQKVKNWVKELRKMLGNEI 112 (170)
T ss_dssp CCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHGGGS
T ss_pred CCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCCCC
Confidence 34445454445555544 47899999999999999999999999999999997743 11111122222222223467
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
| +++++||+|+...... ..+ +...+.+.. +++++++||++|.|++++.
T Consensus 113 p-iilv~nK~Dl~~~~~~--~~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1z08_A 113 C-LCIVGNKIDLEKERHV--SIQ----EAESYAESV------GAKHYHTSAKQNKGIEELF 160 (170)
T ss_dssp E-EEEEEECGGGGGGCCS--CHH----HHHHHHHHT------TCEEEEEBTTTTBSHHHHH
T ss_pred e-EEEEEECccccccccc--CHH----HHHHHHHHc------CCeEEEecCCCCCCHHHHH
Confidence 7 8999999997532111 111 223333443 3689999999999998763
No 91
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.64 E-value=7.5e-16 Score=106.79 Aligned_cols=104 Identities=15% Similarity=0.084 Sum_probs=71.5
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCcEEEEEeCCCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKHLVVLINKMDDPT 104 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivv~NK~Dl~~ 104 (156)
...+.+|||||++++...+..+++.+|++++|+|+++.. ++ ......+..+.. .+.| +++|+||+|+..
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 141 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQ---SF---LNVRNWISQLQMHAYSENPD-IVLCGNKSDLED 141 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHH---HH---HTHHHHHHHHHHHSSSSSCC-EEEEEECTTCGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHH---HH---HHHHHHHHHHHHhcCCCCCC-EEEEEECccccc
Confidence 358999999999999999999999999999999997743 11 111222222222 4677 899999999853
Q ss_pred cchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 105 VMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.... ..+ .+..+.+.. +++++++||++|.|++++.
T Consensus 142 ~~~~--~~~----~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 176 (195)
T 3bc1_A 142 QRAV--KEE----EARELAEKY------GIPYFETSAANGTNISHAI 176 (195)
T ss_dssp GCCS--CHH----HHHHHHHHH------TCCEEECCTTTCTTHHHHH
T ss_pred cccc--CHH----HHHHHHHHc------CCCEEEEECCCCCCHHHHH
Confidence 2111 111 223333443 3589999999999998753
No 92
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.64 E-value=1.1e-15 Score=106.26 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=79.5
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCC----------CcChHHHHHhhhhcC---CEEEEEEeCCCCccccccCCCcchHH
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPG----------HKSFVPNMIGGTAQA---DLAVLVISARKGEFETGFDRGGQTRE 80 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG----------~~~~~~~~~~~~~~~---d~~ilvvD~~~~~~~~~~~~~~~~~~ 80 (156)
.|.|....... .+..+.+||||| ++.+...+..+++.+ |++++|+|++.+. ......
T Consensus 55 ~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~-------~~~~~~ 124 (195)
T 3pqc_A 55 PGKTRSINFYL---VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPP-------QDSDLM 124 (195)
T ss_dssp CCCCCCEEEEE---ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC-------CHHHHH
T ss_pred CCCccCeEEEE---ECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCC-------CHHHHH
Confidence 45554443322 345789999999 444555556666655 8999999997764 234445
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 81 HAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 81 ~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
....+...+.| +++|+||+|+.... ......+++...+...+ .++++++||++|+|++++.
T Consensus 125 ~~~~~~~~~~p-~i~v~nK~Dl~~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l~ 185 (195)
T 3pqc_A 125 MVEWMKSLNIP-FTIVLTKMDKVKMS----ERAKKLEEHRKVFSKYG-----EYTIIPTSSVTGEGISELL 185 (195)
T ss_dssp HHHHHHHTTCC-EEEEEECGGGSCGG----GHHHHHHHHHHHHHSSC-----CSCEEECCTTTCTTHHHHH
T ss_pred HHHHHHHcCCC-EEEEEEChhcCChH----HHHHHHHHHHHHHhhcC-----CCceEEEecCCCCCHHHHH
Confidence 55666777888 89999999986422 23344444555554432 4689999999999998764
No 93
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.64 E-value=4.3e-16 Score=105.74 Aligned_cols=121 Identities=19% Similarity=0.154 Sum_probs=78.4
Q ss_pred cCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCC
Q psy10355 14 KGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVK 91 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (156)
+.++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+.... .+.|
T Consensus 36 ~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~-~~~p 111 (168)
T 1z2a_A 36 KTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRE---SFEAISSWREKVVAEV-GDIP 111 (168)
T ss_dssp CCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHH---HHHTHHHHHHHHHHHH-CSCC
T ss_pred CceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhC-CCCC
Confidence 3444444455555554 57999999999999888889999999999999997743 1111112222221111 4678
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+...... ..+ ++..+.+.. +++++++||++|.|++++.
T Consensus 112 -iilv~nK~Dl~~~~~~--~~~----~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~ 158 (168)
T 1z2a_A 112 -TALVQNKIDLLDDSCI--KNE----EAEGLAKRL------KLRFYRTSVKEDLNVSEVF 158 (168)
T ss_dssp -EEEEEECGGGGGGCSS--CHH----HHHHHHHHH------TCEEEECBTTTTBSSHHHH
T ss_pred -EEEEEECcccCccccc--CHH----HHHHHHHHc------CCeEEEEecCCCCCHHHHH
Confidence 8999999997532111 111 223333443 3589999999999998753
No 94
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.64 E-value=6.8e-17 Score=119.26 Aligned_cols=114 Identities=17% Similarity=0.093 Sum_probs=79.3
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcChH------HHHHhhhh--cCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSFV------PNMIGGTA--QADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~------~~~~~~~~--~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
+|+|++.....+.. +..+.+|||||+.++. ..+..++. .+|++++|+|++.. .........+
T Consensus 34 pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~---------e~~~~~~~~l 103 (272)
T 3b1v_A 34 PGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL---------ERNLYLTTQL 103 (272)
T ss_dssp SCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH---------HHHHHHHHHH
T ss_pred CCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch---------HhHHHHHHHH
Confidence 58999888888776 7889999999998874 34455555 59999999999762 1223333445
Q ss_pred HHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 86 KTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 86 ~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...++| +++++||+|+......... ...+.+.+ +++++++||++|+|+++|.
T Consensus 104 ~~~~~p-~ilv~NK~Dl~~~~~~~~~-------~~~l~~~l------g~~vi~~SA~~g~gi~el~ 155 (272)
T 3b1v_A 104 IETGIP-VTIALNMIDVLDGQGKKIN-------VDKLSYHL------GVPVVATSALKQTGVDQVV 155 (272)
T ss_dssp HHTCSC-EEEEEECHHHHHHTTCCCC-------HHHHHHHH------TSCEEECBTTTTBSHHHHH
T ss_pred HhcCCC-EEEEEEChhhCCcCCcHHH-------HHHHHHHc------CCCEEEEEccCCCCHHHHH
Confidence 557889 8999999997421111111 12222333 3689999999999998753
No 95
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.64 E-value=9.2e-16 Score=107.01 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=70.4
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||++++...+..+++.+|++++|+|++++.. + ......+..+.. .+.| +++|+||+|+.....
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~---~~~~~~~~~i~~~~~~p-iilv~NK~D~~~~~~- 164 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNT---L---DRAKTWVNQLKISSNYI-IILVANKIDKNKFQV- 164 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCCE-EEEEEECTTCC-CCS-
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHhhCCCc-EEEEEECCCcccccC-
Confidence 789999999999999999999999999999999987531 0 111122222222 4556 899999999421111
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..++ +..+++.. +++++++||++|.|++++.
T Consensus 165 --~~~~----~~~~~~~~------~~~~~~~Sa~~~~~i~~l~ 195 (208)
T 3clv_A 165 --DILE----VQKYAQDN------NLLFIQTSAKTGTNIKNIF 195 (208)
T ss_dssp --CHHH----HHHHHHHT------TCEEEEECTTTCTTHHHHH
T ss_pred --CHHH----HHHHHHHc------CCcEEEEecCCCCCHHHHH
Confidence 1222 33334443 4699999999999998753
No 96
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.1e-16 Score=114.35 Aligned_cols=124 Identities=15% Similarity=0.048 Sum_probs=75.2
Q ss_pred hhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC
Q psy10355 12 REKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
..++++.+.....+..++ ..+.+|||||++++...+..+++.+|++|+|+|+++.. +|.....+...+......+
T Consensus 42 ~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~---s~~~~~~~l~~i~~~~~~~ 118 (223)
T 3cpj_B 42 SKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSS---SYENCNHWLSELRENADDN 118 (223)
T ss_dssp -----CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHH---HHHHHHHHHHHHHHHCC--
T ss_pred CCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhCCCC
Confidence 344555555555666666 68999999999999988999999999999999998743 1111111122221111125
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.| +++|+||+|+...... ..+ +...+.+.. +++++++||++|+|++++.
T Consensus 119 ~p-iilv~nK~Dl~~~~~v--~~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 167 (223)
T 3cpj_B 119 VA-VGLIGNKSDLAHLRAV--PTE----ESKTFAQEN------QLLFTETSALNSENVDKAF 167 (223)
T ss_dssp CE-EEEEECCGGGGGGCCS--CHH----HHHHHHHHT------TCEEEECCCC-CCCHHHHH
T ss_pred Ce-EEEEEECccccccccc--CHH----HHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 67 8999999997532111 011 122333333 4689999999999998753
No 97
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.64 E-value=1.2e-16 Score=111.39 Aligned_cols=105 Identities=16% Similarity=0.037 Sum_probs=71.4
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---cCCCcEEEEEeCCCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT---AGVKHLVVLINKMDDPT 104 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~NK~Dl~~ 104 (156)
....+.+|||||++++...+..+++.+|++|+|+|+++.. ++. .....+..+.. .+.| +++|+||+|+..
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~---s~~---~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~ 144 (193)
T 2oil_A 72 AAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQ---TYA---VVERWLKELYDHAEATIV-VMLVGNKSDLSQ 144 (193)
T ss_dssp EEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHH---HHH---THHHHHHHHHTTSCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCe-EEEEEECCCccc
Confidence 4567999999999999989999999999999999997743 111 11122222222 3566 899999999853
Q ss_pred cchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 105 VMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.... ... +...+.+.. +++++++||++|+|++++.
T Consensus 145 ~~~~--~~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 179 (193)
T 2oil_A 145 AREV--PTE----EARMFAENN------GLLFLETSALDSTNVELAF 179 (193)
T ss_dssp GCCS--CHH----HHHHHHHHT------TCEEEEECTTTCTTHHHHH
T ss_pred cccc--CHH----HHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 2111 111 122333333 4689999999999998753
No 98
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=1e-15 Score=106.88 Aligned_cols=106 Identities=17% Similarity=0.164 Sum_probs=72.1
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH--cCCCcEEEEEeCCCCCCcc
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT--AGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~NK~Dl~~~~ 106 (156)
...+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+..... .+.| +++|+||+|+....
T Consensus 55 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~~~~ 130 (199)
T 2gf0_A 55 VCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQ---SLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDETQRE 130 (199)
T ss_dssp EEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHH---HHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTCSSCS
T ss_pred EEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCCccc
Confidence 357999999999999999999999999999999997632 22212222222222221 3578 89999999986432
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.... + ...+.... +++++++||++|.|++++.
T Consensus 131 ~~~~---~----~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 131 VDTR---E----AQAVAQEW------KCAFMETSAKMNYNVKELF 162 (199)
T ss_dssp SCHH---H----HHHHHHHH------TCEEEECBTTTTBSHHHHH
T ss_pred cCHH---H----HHHHHHHh------CCeEEEEecCCCCCHHHHH
Confidence 2221 1 22223333 3589999999999998753
No 99
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.64 E-value=4.2e-16 Score=108.27 Aligned_cols=119 Identities=14% Similarity=0.152 Sum_probs=78.2
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 92 (156)
|++.....+..++..+.+|||||++++...+..+++.+|++++|+|+++.. ++ ......+..... .+.|
T Consensus 53 t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p- 125 (189)
T 2x77_A 53 TVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRD---RM---GVAKHELYALLDEDELRKSL- 125 (189)
T ss_dssp STTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCT---TH---HHHHHHHHHHHTCSTTTTCE-
T ss_pred CCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHH---HH---HHHHHHHHHHHhhhhcCCCe-
Confidence 334445567778999999999999999888888999999999999998753 11 111222222222 3567
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+..... ..++.+.+ ...... ..+++++++||++|+|++++.
T Consensus 126 iilv~nK~Dl~~~~~----~~~~~~~~----~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 175 (189)
T 2x77_A 126 LLIFANKQDLPDAAS----EAEIAEQL----GVSSIM-NRTWTIVKSSSKTGDGLVEGM 175 (189)
T ss_dssp EEEEEECTTSTTCCC----HHHHHHHT----TGGGCC-SSCEEEEECCTTTCTTHHHHH
T ss_pred EEEEEECCCCcCCCC----HHHHHHHh----Chhhcc-CCceEEEEccCCCccCHHHHH
Confidence 899999999864311 11222111 111111 125689999999999998753
No 100
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.63 E-value=1.8e-16 Score=111.42 Aligned_cols=125 Identities=17% Similarity=0.097 Sum_probs=77.6
Q ss_pred HhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc
Q psy10355 11 KREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA 88 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
+..++++.+.....+..++ ..+.+|||||++++...+..+++.+|++|+|+|+++.. ++.....+...+......
T Consensus 53 ~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~ 129 (200)
T 2o52_A 53 DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE---TYNSLAAWLTDARTLASP 129 (200)
T ss_dssp -------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHTCT
T ss_pred cCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCC
Confidence 3445555555555666666 68999999999988888888999999999999998743 111111222222222223
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+.| +++|+||+|+...... ...+ ...+.+.. +++++++||++|.|++++.
T Consensus 130 ~~p-iilv~nK~Dl~~~~~v--~~~~----~~~~~~~~------~~~~~~~SA~~g~gi~~l~ 179 (200)
T 2o52_A 130 NIV-VILCGNKKDLDPEREV--TFLE----ASRFAQEN------ELMFLETSALTGENVEEAF 179 (200)
T ss_dssp TCE-EEEEEECGGGGGGCCS--CHHH----HHHHHHHT------TCEEEEECTTTCTTHHHHH
T ss_pred CCc-EEEEEECCCccccccc--CHHH----HHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 667 8999999997532111 1111 22333333 4689999999999998753
No 101
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.63 E-value=2.3e-16 Score=122.82 Aligned_cols=119 Identities=19% Similarity=0.121 Sum_probs=82.8
Q ss_pred HHHhhcCceeeeeeEEEEeCCe-EEEEEeCCCCcChH-------HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHH
Q psy10355 9 RQKREKGKTVEVGRAYFETDRK-HFTILDAPGHKSFV-------PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTRE 80 (156)
Q Consensus 9 ~~e~~~g~t~~~~~~~~~~~~~-~~~iiDtpG~~~~~-------~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~ 80 (156)
..+..+|+|.+.....+.+.+. .+.+|||||+.++. ..+..+++.+|++|+|+|+ +. ......
T Consensus 61 ~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~-------~~~~~~ 131 (423)
T 3qq5_A 61 IVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--AP-------TPYEDD 131 (423)
T ss_dssp ---------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SC-------CHHHHH
T ss_pred ccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CC-------hHHHHH
Confidence 4567889999999999998776 89999999998763 3467788999999999999 32 245566
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 81 HAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 81 ~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+..+...++| +++|+||+|+...... +. ...+.+. .+++++++||++|+|++++.
T Consensus 132 ~l~~l~~~~~p-iIvV~NK~Dl~~~~~~-----~~---~~~l~~~------~g~~v~~vSAktg~gI~eL~ 187 (423)
T 3qq5_A 132 VVNLFKEMEIP-FVVVVNKIDVLGEKAE-----EL---KGLYESR------YEAKVLLVSALQKKGFDDIG 187 (423)
T ss_dssp HHHHHHHTTCC-EEEECCCCTTTTCCCT-----HH---HHHSSCC------TTCCCCCCSSCCTTSTTTHH
T ss_pred HHHHHHhcCCC-EEEEEeCcCCCCccHH-----HH---HHHHHHH------cCCCEEEEECCCCCCHHHHH
Confidence 66777777889 8999999998654322 11 1111111 24689999999999998864
No 102
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.63 E-value=8e-16 Score=115.28 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=86.7
Q ss_pred hhcCceeeeeeEEEEe-CCeEEEEEeCCCCcCh-----HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 12 REKGKTVEVGRAYFET-DRKHFTILDAPGHKSF-----VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~-~~~~~~iiDtpG~~~~-----~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
...|.|++.....+.+ ++..+.+|||||++++ ...+..+++++|++|+|+|+++... |.....+...+..+
T Consensus 33 ~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s---~~~l~~~~~~l~~l 109 (307)
T 3r7w_A 33 RRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEV---LKDIEIFAKALKQL 109 (307)
T ss_dssp GGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCH---HHHHHHHHHHHHHH
T ss_pred cCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhh---HHHHHHHHHHHHHH
Confidence 4678899988888876 6789999999999988 5667788899999999999987531 11111122222222
Q ss_pred HH--cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCc
Q psy10355 86 KT--AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPL 148 (156)
Q Consensus 86 ~~--~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~ 148 (156)
.. .++| +++++||+|+..............+++..+.+..|+. .++++++||++ .|+.
T Consensus 110 ~~~~~~~p-iilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~---~~~~~~tSa~~-~~i~ 169 (307)
T 3r7w_A 110 RKYSPDAK-IFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFP---NLIGFPTSIWD-ESLY 169 (307)
T ss_dssp HHHCTTCE-EEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCC---SCEEEECCTTS-SHHH
T ss_pred HHhCCCCe-EEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCC---CeEEEEeeecC-ChHH
Confidence 22 2677 8999999998642122211123345566666666541 36999999999 5544
No 103
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.63 E-value=2.1e-15 Score=104.69 Aligned_cols=112 Identities=18% Similarity=0.135 Sum_probs=64.0
Q ss_pred EEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcEEEEEeC
Q psy10355 23 AYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHLVVLINK 99 (156)
Q Consensus 23 ~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~NK 99 (156)
..+..++ ..+.+|||||+.++...+..+++.+|++++|+|+++.. ++.....+...+..... .+.| +++|+||
T Consensus 60 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK 135 (190)
T 3con_A 60 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSK---SFADINLYREQIKRVKDSDDVP-MVLVGNK 135 (190)
T ss_dssp EEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHTCSCCC-EEEEEEC
T ss_pred EEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHH---HHHHHHHHHHHHHHHhCCCCCe-EEEEEEC
Confidence 3455555 45999999999999999999999999999999997743 11111112222222211 3677 8999999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 100 MDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|+....... + ++..+.+.. +++++++||++|.|++++.
T Consensus 136 ~Dl~~~~~~~---~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 136 CDLPTRTVDT---K----QAHELAKSY------GIPFIETSAKTRQGVEDAF 174 (190)
T ss_dssp TTCSCCCSCH---H----HHHHHHHHH------TCCEEECCTTTCTTHHHHH
T ss_pred CcCCcccCCH---H----HHHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 9986422221 1 123333433 3589999999999998753
No 104
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.63 E-value=8.4e-16 Score=108.79 Aligned_cols=123 Identities=18% Similarity=0.212 Sum_probs=72.5
Q ss_pred EEEEeC---CeEEEEEeCCCCcChHH-HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-H-----HcCCCc
Q psy10355 23 AYFETD---RKHFTILDAPGHKSFVP-NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-K-----TAGVKH 92 (156)
Q Consensus 23 ~~~~~~---~~~~~iiDtpG~~~~~~-~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~ 92 (156)
..+.++ +..+.+|||||++++.. .+..+++.+|++++|+|+++.. ..+ ......+... . ..+.|
T Consensus 44 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~p- 117 (214)
T 2fh5_B 44 AIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQ--REV---KDVAEFLYQVLIDSMALKNSPS- 117 (214)
T ss_dssp EEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHH--HHH---HHHHHHHHHHHHHHHTSTTCCE-
T ss_pred EEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcC--HHH---HHHHHHHHHHHhhhhhcccCCC-
Confidence 335555 67899999999999987 6778899999999999997621 000 0111112111 1 12567
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHH---------------H--cC-----CCC---CCCCeEEEeecccC---
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLK---------------K--LG-----FNA---AKDLSFMPCSGELE--- 144 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~---------------~--~~-----~~~---~~~~~~i~~Sa~~g--- 144 (156)
+++|+||+|+..........+.+.+.+...-. . .+ |.. ...++++++||++|
T Consensus 118 iilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~ 197 (214)
T 2fh5_B 118 LLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGD 197 (214)
T ss_dssp EEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-----
T ss_pred EEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCcc
Confidence 89999999986543333223333332221000 0 00 000 01568999999999
Q ss_pred ---CCCccCC
Q psy10355 145 ---KNPLLLG 151 (156)
Q Consensus 145 ---~gi~~l~ 151 (156)
+|++++.
T Consensus 198 ~~~~gv~~lf 207 (214)
T 2fh5_B 198 TGSADIQDLE 207 (214)
T ss_dssp --CCBCHHHH
T ss_pred ccccChHHHH
Confidence 9998763
No 105
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.63 E-value=1.4e-15 Score=102.59 Aligned_cols=111 Identities=15% Similarity=0.109 Sum_probs=72.9
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcEEEEEeCC
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHLVVLINKM 100 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~NK~ 100 (156)
.+..++ ..+.+|||||+.++...+..+++.+|++++|+|+++.. ++.....+...+..... .+.| +++++||+
T Consensus 43 ~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~ 118 (166)
T 2ce2_X 43 QVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK---SFEDIHQYREQIKRVKDSDDVP-MVLVGNKS 118 (166)
T ss_dssp EEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHTCSCCC-EEEEEECT
T ss_pred EEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-EEEEEEch
Confidence 344444 56899999999999989999999999999999997642 11111112222221111 2678 89999999
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 101 DDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 101 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+........ ....+.+.. +++++++||++|.|++++.
T Consensus 119 Dl~~~~~~~~-------~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 156 (166)
T 2ce2_X 119 DLAARTVESR-------QAQDLARSY------GIPYIETSAKTRQGVEDAF 156 (166)
T ss_dssp TCSCCCSCHH-------HHHHHHHHH------TCCEEEECTTTCTTHHHHH
T ss_pred hhhhcccCHH-------HHHHHHHHc------CCeEEEecCCCCCCHHHHH
Confidence 9864322221 122333333 3589999999999998753
No 106
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.63 E-value=1.8e-15 Score=103.37 Aligned_cols=117 Identities=17% Similarity=0.103 Sum_probs=68.5
Q ss_pred cCceeeeeeEEEEeCC--eEEEEEeCCCCcC--hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH--
Q psy10355 14 KGKTVEVGRAYFETDR--KHFTILDAPGHKS--FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-- 87 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~--~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-- 87 (156)
.|.+.... .+..++ ..+.+|||||+.. +......+++.+|++++|+|+++.. +|. .....+..+..
T Consensus 36 ~~~~~~~~--~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~l~~~~ 107 (175)
T 2nzj_A 36 LGEDVYER--TLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRG---SFE---SASELRIQLRRTH 107 (175)
T ss_dssp SSSSEEEE--EEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHH---HHH---HHHHHHHHHHHCC
T ss_pred cccceeEE--EEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhh
Confidence 44444333 334444 5789999999987 4556677888999999999997632 111 11122222332
Q ss_pred --cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 88 --AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 88 --~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.| +++|+||+|+....... .++ ...+.... +++++++||++|+|++++.
T Consensus 108 ~~~~~p-iilv~NK~Dl~~~~~v~--~~~----~~~~~~~~------~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 108 QADHVP-IILVGNKADLARCREVS--VEE----GRACAVVF------DCKFIETSATLQHNVAELF 160 (175)
T ss_dssp ----CC-EEEEEECTTCTTTCCSC--HHH----HHHHHHHH------TSEEEECBTTTTBSHHHHH
T ss_pred ccCCCC-EEEEEEChhhccccccC--HHH----HHHHHHHc------CCeEEEEecCCCCCHHHHH
Confidence 2678 89999999986421111 111 22222333 3589999999999998763
No 107
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.63 E-value=7.2e-16 Score=107.15 Aligned_cols=122 Identities=12% Similarity=0.090 Sum_probs=78.0
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcChH-HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-Hc
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSFV-PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TA 88 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~-~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~ 88 (156)
.+.++.+.....+..++ ..+.+|||||++++. ..+..+++.+|++++|+|+++.. +|.....+...+.... ..
T Consensus 50 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~---s~~~~~~~~~~i~~~~~~~ 126 (189)
T 1z06_A 50 EATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMA---SFHSLPAWIEECKQHLLAN 126 (189)
T ss_dssp CCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHH---HHHTHHHHHHHHHHHCCCS
T ss_pred CCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCCC
Confidence 34444455555566655 689999999999988 77888999999999999998742 1111122222222111 24
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccC---CCCccC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELE---KNPLLL 150 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g---~gi~~l 150 (156)
+.| +++|+||+|+....... . +....+.+.. +++++++||++| +|++++
T Consensus 127 ~~p-iilv~nK~Dl~~~~~v~--~----~~~~~~~~~~------~~~~~~~Sa~~~~~~~~i~~l 178 (189)
T 1z06_A 127 DIP-RILVGNKCDLRSAIQVP--T----DLAQKFADTH------SMPLFETSAKNPNDNDHVEAI 178 (189)
T ss_dssp CCC-EEEEEECTTCGGGCCSC--H----HHHHHHHHHT------TCCEEECCSSSGGGGSCHHHH
T ss_pred CCC-EEEEEECccccccceeC--H----HHHHHHHHHc------CCEEEEEeCCcCCcccCHHHH
Confidence 677 89999999985321111 1 1122333333 458999999999 887654
No 108
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.62 E-value=5.7e-16 Score=106.82 Aligned_cols=119 Identities=15% Similarity=0.155 Sum_probs=74.6
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 92 (156)
|++.....+.+++..+.+|||||++++...+..+++.+|++++|+|+++.. ++ ......+.... ..+.|
T Consensus 49 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p- 121 (183)
T 1moz_A 49 TIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKD---RM---STASKELHLMLQEEELQDAA- 121 (183)
T ss_dssp STTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTT---TH---HHHHHHHHHHTTSSTTSSCE-
T ss_pred cCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH---HH---HHHHHHHHHHHcChhhCCCe-
Confidence 334445566778899999999999999888899999999999999997753 11 11222222222 24567
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++++||+|+..... ..+ +...+...... ...++++++||++|+|++++.
T Consensus 122 iilv~nK~Dl~~~~~----~~~----i~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 171 (183)
T 1moz_A 122 LLVFANKQDQPGALS----ASE----VSKELNLVELK-DRSWSIVASSAIKGEGITEGL 171 (183)
T ss_dssp EEEEEECTTSTTCCC----HHH----HHHHTTTTTCC-SSCEEEEEEBGGGTBTHHHHH
T ss_pred EEEEEECCCCCCCCC----HHH----HHHHhCccccc-CCceEEEEccCCCCcCHHHHH
Confidence 899999999864211 122 22211111111 124689999999999998753
No 109
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.62 E-value=1.8e-15 Score=105.99 Aligned_cols=131 Identities=15% Similarity=0.026 Sum_probs=77.8
Q ss_pred hcCceeeeeeEEEEe---CCeEEEEEeCCCCcChHHHH---HhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-
Q psy10355 13 EKGKTVEVGRAYFET---DRKHFTILDAPGHKSFVPNM---IGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA- 85 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~---~~~~~~iiDtpG~~~~~~~~---~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~- 85 (156)
..|++.......... ....+.+|||||+++|.... ..+++++|++|+|+|+++.. ... ...+...+...
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~---~~~~~~~l~~~~ 124 (196)
T 3llu_A 49 TLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDY-MEA---LTRLHITVSKAY 124 (196)
T ss_dssp GGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCC-HHH---HHHHHHHHHHHH
T ss_pred eeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCch-HHH---HHHHHHHHHHHH
Confidence 334444444444443 44789999999999987776 78999999999999998752 111 01122222222
Q ss_pred -HHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 86 -KTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 86 -~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
...+.| +++|+||+|+............+.......+...... ..+++++++||++ +|++++
T Consensus 125 ~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~e~Sa~~-~~v~~~ 187 (196)
T 3llu_A 125 KVNPDMN-FEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE-KLHLSFYLTSIYD-HSIFEA 187 (196)
T ss_dssp HHCTTCE-EEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT-TSCEEEEEECTTS-THHHHH
T ss_pred hcCCCCc-EEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh-cCCcceEEEEech-hhHHHH
Confidence 123667 8999999998642211111122222222222221111 1257899999999 998765
No 110
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.62 E-value=2.6e-15 Score=101.61 Aligned_cols=113 Identities=17% Similarity=0.125 Sum_probs=71.2
Q ss_pred EEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcEEEEEeC
Q psy10355 23 AYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHLVVLINK 99 (156)
Q Consensus 23 ~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~NK 99 (156)
..+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+..... .+.| +++++||
T Consensus 43 ~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK 118 (168)
T 1u8z_A 43 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME---SFAATADFREQILRVKEDENVP-FLLVGNK 118 (168)
T ss_dssp EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHCCTTSC-EEEEEEC
T ss_pred EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-EEEEEEC
Confidence 3444554 57999999999999999999999999999999998642 11111112222221111 3677 8999999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 100 MDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|+...... ..++ ...+++.. +++++++||++|.|++++.
T Consensus 119 ~Dl~~~~~~--~~~~----~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 158 (168)
T 1u8z_A 119 SDLEDKRQV--SVEE----AKNRADQW------NVNYVETSAKTRANVDKVF 158 (168)
T ss_dssp GGGGGGCCS--CHHH----HHHHHHHH------TCEEEECCTTTCTTHHHHH
T ss_pred ccccccCcc--CHHH----HHHHHHHc------CCeEEEeCCCCCCCHHHHH
Confidence 997532111 1122 23333333 3589999999999998753
No 111
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.62 E-value=4.3e-16 Score=110.97 Aligned_cols=120 Identities=15% Similarity=0.082 Sum_probs=80.7
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCc
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKH 92 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (156)
..|++.......+...+..+.+|||||++++...+..+++++|++++|+|+++.. +|.....+...+... ..++|
T Consensus 47 t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~-~~~~p- 121 (221)
T 3gj0_A 47 TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRV---TYKNVPNWHRDLVRV-CENIP- 121 (221)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHH---HHHTHHHHHHHHHHH-STTCC-
T ss_pred ccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHh-CCCCC-
Confidence 3456666666655556678999999999999888889999999999999998743 121111222222111 12678
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+........ ...+.+.. +++++++||++|.|++++.
T Consensus 122 ~ilv~nK~Dl~~~~~~~~--------~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 166 (221)
T 3gj0_A 122 IVLCGNKVDIKDRKVKAK--------SIVFHRKK------NLQYYDISAKSNYNFEKPF 166 (221)
T ss_dssp EEEEEECTTSSSCSSCGG--------GCCHHHHH------TCEEEECBGGGTBTTTHHH
T ss_pred EEEEEECCccccccccHH--------HHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 899999999864322111 11222222 4689999999999998753
No 112
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.62 E-value=4.3e-15 Score=104.18 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=74.9
Q ss_pred eEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEe
Q psy10355 22 RAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLIN 98 (156)
Q Consensus 22 ~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~N 98 (156)
...+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+...+.... ..+.| +++|+|
T Consensus 52 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~n 127 (206)
T 2bov_A 52 RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME---SFAATADFREQILRVKEDENVP-FLLVGN 127 (206)
T ss_dssp EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHTTCSCCC-EEEEEE
T ss_pred EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEe
Confidence 34455555 47999999999999999999999999999999997632 1111111212211111 13677 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+|+...... ..++ +..+.+.. +++++++||++|.|++++.
T Consensus 128 K~Dl~~~~~~--~~~~----~~~~~~~~------~~~~~~~Sa~~g~gi~~l~ 168 (206)
T 2bov_A 128 KSDLEDKRQV--SVEE----AKNRAEQW------NVNYVETSAKTRANVDKVF 168 (206)
T ss_dssp CTTCGGGCCS--CHHH----HHHHHHHH------TCEEEEECTTTCTTHHHHH
T ss_pred ccCccccccc--cHHH----HHHHHHHh------CCeEEEEeCCCCCCHHHHH
Confidence 9998532111 1122 23333333 3589999999999998753
No 113
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.61 E-value=4.9e-16 Score=110.32 Aligned_cols=106 Identities=17% Similarity=0.054 Sum_probs=71.7
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhH
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSE 109 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~ 109 (156)
..+.+|||||++++...+..+++.+|++++|+|++++. ++.....+...+......+.| +++|+||+|+......
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~- 135 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRI---TCQNLARWVKEFQAVVGNEAP-IVVCANKIDIKNRQKI- 135 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHCSSSC-EEEEEECTTCC----C-
T ss_pred EEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccccc-
Confidence 67999999999998888888999999999999998753 221122333333333334678 8999999998632110
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 110 ARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+....+.+. .+++++++||++|.|++++.
T Consensus 136 -----~~~~~~~~~~~------~~~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 136 -----SKKLVMEVLKG------KNYEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp -----CHHHHHHHTTT------CCCEEEEEBTTTTBTTTHHH
T ss_pred -----CHHHHHHHHHH------cCCcEEEEecCCCCCHHHHH
Confidence 11112222222 25689999999999998763
No 114
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.61 E-value=8.5e-16 Score=108.39 Aligned_cols=124 Identities=14% Similarity=0.155 Sum_probs=77.0
Q ss_pred ceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH-HHHHHHHH--cCC
Q psy10355 16 KTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR-EHAMLAKT--AGV 90 (156)
Q Consensus 16 ~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~ 90 (156)
++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. +|. ... ..+..+.. .+.
T Consensus 62 t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~ 135 (204)
T 4gzl_A 62 TVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPA---SFE---NVRAKWYPEVRHHCPNT 135 (204)
T ss_dssp CSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HHH---HHHHTHHHHHHHHCSSC
T ss_pred eecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCC
Confidence 33344444445554 45669999999999999999999999999999998743 111 111 11222222 267
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHH------HHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNE------CKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
| +++|+||+|+...........+ ..++...+.+..+ ..+++++||++|+|++++.
T Consensus 136 p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~SA~~g~gi~~l~ 196 (204)
T 4gzl_A 136 P-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG-----AVKYLECSALTQRGLKTVF 196 (204)
T ss_dssp C-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT-----CSEEEECCTTTCTTHHHHH
T ss_pred C-EEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcC-----CcEEEEeeCCCCCCHHHHH
Confidence 8 8999999997643211111100 0112333444443 2479999999999998763
No 115
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.61 E-value=1.5e-15 Score=102.98 Aligned_cols=108 Identities=19% Similarity=0.110 Sum_probs=72.2
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+.... ..+.| +++++||+|+.....
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~ 125 (167)
T 1c1y_A 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQS---TFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERV 125 (167)
T ss_dssp EEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGCC
T ss_pred EEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhhCcCCCc-EEEEEECcccccccc
Confidence 457999999999999999999999999999999997732 1211122222222221 23677 899999999853211
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. ..+ +...+.+.. .+.+++++||++|.|++++.
T Consensus 126 ~--~~~----~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~ 158 (167)
T 1c1y_A 126 V--GKE----QGQNLARQW-----CNCAFLESSAKSKINVNEIF 158 (167)
T ss_dssp S--CHH----HHHHHHHHT-----TSCEEEECBTTTTBSHHHHH
T ss_pred C--CHH----HHHHHHHHc-----cCCcEEEecCCCCCCHHHHH
Confidence 1 111 222333333 14689999999999998764
No 116
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.61 E-value=8.9e-16 Score=106.34 Aligned_cols=117 Identities=23% Similarity=0.208 Sum_probs=80.4
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcChH------HHHHhhhh--cCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFV------PNMIGGTA--QADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~------~~~~~~~~--~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..+|+|.+.....+.+++..+.+|||||+.++. ..+..+++ .+|++++|+|++.. ......+.
T Consensus 36 ~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~ 106 (188)
T 2wjg_A 36 NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---------ERNLYLTL 106 (188)
T ss_dssp ECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH---------HHHHHHHH
T ss_pred CCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH---------HHHHHHHH
Confidence 346888888888889999999999999998873 33445554 49999999998652 22333334
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+...+.| +++++||+|+....... .....+.+.. +++++++||++|.|++++.
T Consensus 107 ~~~~~~~p-iilv~nK~Dl~~~~~~~-------~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 160 (188)
T 2wjg_A 107 QLMEMGAN-LLLALNKMDLAKSLGIE-------IDVDKLEKIL------GVKVVPLSAAKKMGIEELK 160 (188)
T ss_dssp HHHTTTCC-EEEEEECHHHHHHTTCC-------CCHHHHHHHH------TSCEEECBGGGTBSHHHHH
T ss_pred HHHhcCCC-EEEEEEhhhccccccch-------HHHHHHHHHh------CCCeEEEEecCCCCHHHHH
Confidence 44456778 89999999964211100 1122223333 3589999999999998753
No 117
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=3.4e-15 Score=104.06 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=74.8
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH-HHHHHHHHc--CCCcEEEEEe
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR-EHAMLAKTA--GVKHLVVLIN 98 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~ivv~N 98 (156)
.+..++ ..+.+|||||++++...+..+++++|++++|+|+++.. +|. ... ..+..+... +.| +++|+|
T Consensus 58 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iilv~n 130 (194)
T 2atx_A 58 SVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPA---SFQ---NVKEEWVPELKEYAPNVP-FLLIGT 130 (194)
T ss_dssp EEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHH---HHH---HHHHTHHHHHHHHSTTCC-EEEEEE
T ss_pred EEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEEE
Confidence 445554 67999999999999988999999999999999997743 111 111 112222222 678 899999
Q ss_pred CCCCCCcchhHHHHH------HHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 99 KMDDPTVMWSEARYN------ECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+|+.........+. ...++...+.+..++ .+++++||++|+|++++.
T Consensus 131 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~ 184 (194)
T 2atx_A 131 QIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGA-----CCYVECSALTQKGLKTVF 184 (194)
T ss_dssp CTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC-----SCEEECCTTTCTTHHHHH
T ss_pred ChhhcccccchhhcccccCcccCHHHHHHHHHHcCC-----cEEEEeeCCCCCCHHHHH
Confidence 999864211000000 001223334444432 489999999999998764
No 118
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.61 E-value=5.5e-15 Score=105.86 Aligned_cols=127 Identities=14% Similarity=0.103 Sum_probs=77.1
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCC------cCh---HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGH------KSF---VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~------~~~---~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..++|.+.....+..++..+.+|||||+ ++. ...+..++..+|++|+|+|+++.. +|. ...+...+.
T Consensus 59 ~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~-~~~~~~~~~ 134 (228)
T 2qu8_A 59 YSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQC---GLT-IKEQINLFY 134 (228)
T ss_dssp C-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTT---SSC-HHHHHHHHH
T ss_pred CCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEeccccc---Ccc-hHHHHHHHH
Confidence 3456777777777788899999999999 331 122334567889999999998753 111 112233444
Q ss_pred HHHHc--CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTA--GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+... +.| +++|+||+|+....... ....+.+..+.+..+ ..++++++||++|+|++++.
T Consensus 135 ~l~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~SA~~g~gi~~l~ 196 (228)
T 2qu8_A 135 SIKSVFSNKS-IVIGFNKIDKCNMDSLS---IDNKLLIKQILDNVK----NPIKFSSFSTLTGVGVEQAK 196 (228)
T ss_dssp HHHTCC-CCC-EEEEEECGGGCC--CCC---HHHHHHHHHHHHHCC----SCEEEEECCTTTCTTHHHHH
T ss_pred HHHHhhcCCc-EEEEEeCcccCCchhhH---HHHHHHHHHHHHhcC----CCceEEEEecccCCCHHHHH
Confidence 44443 678 89999999986422111 111223334444332 12689999999999998764
No 119
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.61 E-value=8e-16 Score=104.67 Aligned_cols=120 Identities=13% Similarity=0.026 Sum_probs=69.0
Q ss_pred ceeeeeeEEEEeCC--eEEEEEeCCCCcChHH-HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCC
Q psy10355 16 KTVEVGRAYFETDR--KHFTILDAPGHKSFVP-NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVK 91 (156)
Q Consensus 16 ~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~-~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 91 (156)
.+.+.....+..++ ..+.+|||||++++.. .+..+++.+|++++|+|+++.. +|.....+...+.... ..+.|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p 111 (169)
T 3q85_A 35 NSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRR---SFSKVPETLLRLRAGRPHHDLP 111 (169)
T ss_dssp ---CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHSTTSCCC
T ss_pred CcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChH---HHHHHHHHHHHHHhcccCCCCC
Confidence 34444555555555 5788999999998876 5666788999999999998732 2221122222111111 12678
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+...... .. ++...+.+.. +++++++||++|+|++++.
T Consensus 112 -~ilv~nK~Dl~~~~~~--~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 158 (169)
T 3q85_A 112 -VILVGNKSDLARSREV--SL----EEGRHLAGTL------SCKHIETSAALHHNTRELF 158 (169)
T ss_dssp -EEEEEECTTCGGGCCS--CH----HHHHHHHHHT------TCEEEECBTTTTBSHHHHH
T ss_pred -EEEEeeCcchhhcccC--CH----HHHHHHHHHc------CCcEEEecCccCCCHHHHH
Confidence 8999999998532111 11 1223333443 4689999999999998753
No 120
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.60 E-value=2.1e-15 Score=114.04 Aligned_cols=119 Identities=18% Similarity=0.165 Sum_probs=75.9
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-HH---cCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-KT---AGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~ 92 (156)
|++.....+...+..+.||||||+++|...+..+++.+|++|+|+|+++.. +| ......+..+ .. .++|
T Consensus 196 T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~---s~---~~~~~~~~~~~~~~~~~~~p- 268 (329)
T 3o47_A 196 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE---RV---NEAREELMRMLAEDELRDAV- 268 (329)
T ss_dssp ETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSS---SH---HHHHHHHHHHHTCGGGTTCE-
T ss_pred ccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchH---HH---HHHHHHHHHHHhhhccCCCe-
Confidence 555666777888999999999999999999999999999999999997643 11 1111222222 21 2667
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+..... ..++.+.+ ..... ...+++++++||++|+|+++|.
T Consensus 269 iilV~NK~Dl~~~~~----~~~i~~~~----~~~~~-~~~~~~~~~vSAk~g~gi~el~ 318 (329)
T 3o47_A 269 LLVFANKQDLPNAMN----AAEITDKL----GLHSL-RHRNWYIQATCATSGDGLYEGL 318 (329)
T ss_dssp EEEEEECTTSTTCCC----HHHHHHHH----TCTTC-CSSCEEEEECBTTTTBTHHHHH
T ss_pred EEEEEECccCCcccC----HHHHHHHh----chhhh-hcCCCEEEEEECCCCcCHHHHH
Confidence 899999999864321 12222222 11111 1135789999999999998764
No 121
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.60 E-value=1.9e-15 Score=103.71 Aligned_cols=113 Identities=15% Similarity=0.121 Sum_probs=73.9
Q ss_pred EEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH-HHHHHcCCCcEEEEEeC
Q psy10355 23 AYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA-MLAKTAGVKHLVVLINK 99 (156)
Q Consensus 23 ~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ivv~NK 99 (156)
..+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+ ......+.| +++|+||
T Consensus 48 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-iilv~nK 123 (181)
T 2fn4_A 48 KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQ---SFNEVGKLFTQILRVKDRDDFP-VVLVGNK 123 (181)
T ss_dssp EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHTSSCCC-EEEEEEC
T ss_pred EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEEC
Confidence 4455555 57899999999999888899999999999999998742 111111122222 222234678 8999999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 100 MDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|+....... .. +...+.... +++++++||++|.|++++.
T Consensus 124 ~Dl~~~~~v~--~~----~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 124 ADLESQRQVP--RS----EASAFGASH------HVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp GGGGGGCCSC--HH----HHHHHHHHT------TCEEEECBTTTTBSHHHHH
T ss_pred cccccccccC--HH----HHHHHHHHc------CCeEEEecCCCCCCHHHHH
Confidence 9975321110 11 122223333 4689999999999998753
No 122
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=2.7e-15 Score=101.97 Aligned_cols=106 Identities=18% Similarity=0.160 Sum_probs=70.3
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH--cCCCcEEEEEeCCCCCCcch
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT--AGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~NK~Dl~~~~~ 107 (156)
..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+..... .+.| +++++||+|+.....
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~~~~~ 126 (172)
T 2erx_A 51 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQ---SLEELKPIYEQICEIKGDVESIP-IMLVGNKCDESPSRE 126 (172)
T ss_dssp EEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHH---HHHTTHHHHHHHHHHHC---CCC-EEEEEECGGGGGGCC
T ss_pred EEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHH---HHHHHHHHHHHHHHHhCCCCCCC-EEEEEEccccccccc
Confidence 57999999999999999999999999999999998642 12111222222222211 3678 899999999753211
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.. ..+ ...+.... +++++++||++|.|++++.
T Consensus 127 v~--~~~----~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 158 (172)
T 2erx_A 127 VQ--SSE----AEALARTW------KCAFMETSAKLNHNVKELF 158 (172)
T ss_dssp SC--HHH----HHHHHHHH------TCEEEECBTTTTBSHHHHH
T ss_pred cC--HHH----HHHHHHHh------CCeEEEecCCCCcCHHHHH
Confidence 11 111 22222333 3589999999999998753
No 123
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.60 E-value=4e-15 Score=100.91 Aligned_cols=105 Identities=18% Similarity=0.082 Sum_probs=56.8
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCcEEEEEeCCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKHLVVLINKMDDP 103 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivv~NK~Dl~ 103 (156)
....+.+|||||++++...+..+++.+|++++|+|+++.. +|. .....+..+.. .+.| +++|+||+|+.
T Consensus 47 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 119 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKG---SFE---KASELRVQLRRARQTDDVP-IILVGNKSDLV 119 (166)
T ss_dssp EEEEEEEEECC---------------CCEEEEEEETTCHH---HHH---HHHHHHHHHHHCC---CCC-EEEEEECTTCC
T ss_pred EEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCCC-EEEEEeccccc
Confidence 4467999999999999999999999999999999998642 111 11122222222 3678 89999999986
Q ss_pred CcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 104 TVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...... .++ ...+.... +++++++||++|+|++++.
T Consensus 120 ~~~~~~--~~~----~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 155 (166)
T 3q72_A 120 RSREVS--VDE----GRACAVVF------DCKFIETSAALHHNVQALF 155 (166)
T ss_dssp SSCCSC--HHH----HHHHHHHT------TCEEEECBGGGTBSHHHHH
T ss_pred cccccC--HHH----HHHHHHHh------CCcEEEeccCCCCCHHHHH
Confidence 432111 111 22222333 4699999999999998763
No 124
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.60 E-value=5.3e-15 Score=101.94 Aligned_cols=114 Identities=18% Similarity=0.143 Sum_probs=75.0
Q ss_pred eEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEe
Q psy10355 22 RAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLIN 98 (156)
Q Consensus 22 ~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~N 98 (156)
...+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+.... ..+.| +++|+|
T Consensus 56 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~n 131 (187)
T 2a9k_A 56 RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME---SFAATADFREQILRVKEDENVP-FLLVGN 131 (187)
T ss_dssp EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHCCTTCC-EEEEEE
T ss_pred EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEE
Confidence 33445555 47999999999999999999999999999999997632 1111112222222221 13677 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+|+..... ....+ +..+++.. +++++++||++|.|++++.
T Consensus 132 K~Dl~~~~~--~~~~~----~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 172 (187)
T 2a9k_A 132 KSDLEDKRQ--VSVEE----AKNRAEQW------NVNYVETSAKTRANVDKVF 172 (187)
T ss_dssp CGGGGGGCC--SCHHH----HHHHHHHT------TCEEEECCTTTCTTHHHHH
T ss_pred CccccccCc--cCHHH----HHHHHHHc------CCeEEEeCCCCCCCHHHHH
Confidence 999753211 11122 33333443 4689999999999998753
No 125
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.60 E-value=2.6e-15 Score=112.27 Aligned_cols=118 Identities=13% Similarity=0.157 Sum_probs=82.5
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCc-C--------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHK-S--------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~-~--------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..++|.......+..++.++.+|||||++ + +...+..+++.+|++++|+|++. . .......+.
T Consensus 39 ~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~-------~~~~~~i~~ 110 (301)
T 1ega_A 39 KAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-W-------TPDDEMVLN 110 (301)
T ss_dssp CSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-C-------CHHHHHHHH
T ss_pred CCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-C-------CHHHHHHHH
Confidence 45667766666778889999999999997 3 23334667788999999999976 4 345556666
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.+...+.| .++++||+|+... . ..+.+.+..+.+..++ .+++++||++|.|++.|
T Consensus 111 ~l~~~~~P-~ilvlNK~D~~~~---~---~~~~~~l~~l~~~~~~-----~~~i~iSA~~g~~v~~l 165 (301)
T 1ega_A 111 KLREGKAP-VILAVNKVDNVQE---K---ADLLPHLQFLASQMNF-----LDIVPISAETGLNVDTI 165 (301)
T ss_dssp HHHSSSSC-EEEEEESTTTCCC---H---HHHHHHHHHHHTTSCC-----SEEEECCTTTTTTHHHH
T ss_pred HHHhcCCC-EEEEEECcccCcc---H---HHHHHHHHHHHHhcCc-----CceEEEECCCCCCHHHH
Confidence 66656788 7999999997631 1 1222333333333332 37899999999998865
No 126
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.59 E-value=1.8e-15 Score=104.31 Aligned_cols=116 Identities=14% Similarity=0.177 Sum_probs=72.9
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH-HHHHHHHH--cCCCcEEEEEe
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR-EHAMLAKT--AGVKHLVVLIN 98 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~ivv~N 98 (156)
.+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++ .... ..+..+.. .+.| +++|+|
T Consensus 45 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-iilv~n 117 (186)
T 1mh1_A 45 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPA---SF---ENVRAKWYPEVRHHCPNTP-IILVGT 117 (186)
T ss_dssp EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HH---HHHHHTHHHHHHHHSTTSC-EEEEEE
T ss_pred EEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChh---hH---HHHHHHHHHHHHHhCCCCC-EEEEeE
Confidence 344444 45779999999999888888999999999999998743 11 1111 11222222 2678 899999
Q ss_pred CCCCCCcchhHHHHHH------HHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 99 KMDDPTVMWSEARYNE------CKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+|+.........+.+ ..++...+.+..+ .++++++||++|.|++++.
T Consensus 118 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~Sa~~g~gi~~l~ 171 (186)
T 1mh1_A 118 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG-----AVKYLECSALTQRGLKTVF 171 (186)
T ss_dssp CHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT-----CSEEEECCTTTCTTHHHHH
T ss_pred cccccccchhhhhhcccccccCCHHHHHHHHHhcC-----CcEEEEecCCCccCHHHHH
Confidence 9997532111110000 0112233334432 2489999999999998753
No 127
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.59 E-value=2.7e-15 Score=101.41 Aligned_cols=114 Identities=18% Similarity=0.119 Sum_probs=73.3
Q ss_pred eEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH-HHHHHcCCCcEEEEEe
Q psy10355 22 RAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA-MLAKTAGVKHLVVLIN 98 (156)
Q Consensus 22 ~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ivv~N 98 (156)
...+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+ ......+.| +++|+|
T Consensus 41 ~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~n 116 (167)
T 1kao_A 41 RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQ---SFQDIKPMRDQIIRVKRYEKVP-VILVGN 116 (167)
T ss_dssp EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHTTTSCCC-EEEEEE
T ss_pred EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEE
Confidence 33444554 45999999999999999999999999999999998742 111011111111 111123677 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+|+....... .. +...+.+.. +++++++||++|.|++++.
T Consensus 117 K~Dl~~~~~~~--~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 157 (167)
T 1kao_A 117 KVDLESEREVS--SS----EGRALAEEW------GCPFMETSAKSKTMVDELF 157 (167)
T ss_dssp CGGGGGGCCSC--HH----HHHHHHHHH------TSCEEEECTTCHHHHHHHH
T ss_pred CCcccccccCC--HH----HHHHHHHHh------CCCEEEecCCCCcCHHHHH
Confidence 99975321110 11 122333333 3589999999999988753
No 128
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.59 E-value=4.1e-15 Score=104.27 Aligned_cols=122 Identities=13% Similarity=0.020 Sum_probs=76.9
Q ss_pred cCceeeeeeEEEEeCC--eEEEEEeCCCCcChHH-HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cC
Q psy10355 14 KGKTVEVGRAYFETDR--KHFTILDAPGHKSFVP-NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AG 89 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~-~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 89 (156)
++++.+.....+..++ ..+.+|||||+.++.. .+..+++.+|++++|+|+++.. +|.....+...+..... .+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~ 130 (195)
T 3cbq_A 54 PENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRR---SFSKVPETLLRLRAGRPHHD 130 (195)
T ss_dssp TTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHSTTSC
T ss_pred CCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCC
Confidence 4455555555566665 4688999999988765 6677789999999999998632 22212222222111111 36
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.| +++|+||+|+...... ..++ ...+.+.. +++++++||++|.|++++.
T Consensus 131 ~p-iilv~nK~Dl~~~~~v--~~~~----~~~~a~~~------~~~~~e~Sa~~~~~v~~lf 179 (195)
T 3cbq_A 131 LP-VILVGNKSDLARSREV--SLEE----GRHLAGTL------SCKHIETSAALHHNTRELF 179 (195)
T ss_dssp CC-EEEEEECTTCTTTCCS--CHHH----HHHHHHHT------TCEEEEEBTTTTBSHHHHH
T ss_pred CC-EEEEeechhccccCCc--CHHH----HHHHHHHh------CCEEEEEcCCCCCCHHHHH
Confidence 77 8999999998632111 1112 22233333 3589999999999998753
No 129
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.59 E-value=3.8e-16 Score=122.15 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=75.3
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCc--------ChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHK--------SFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~--------~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
+..+|+|.+.....+.+.+..+.+|||||+. .+...+..+++.+|++++|+|+..+. .....+..
T Consensus 32 ~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~-------~~~d~~~~ 104 (436)
T 2hjg_A 32 EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGV-------TAADEEVA 104 (436)
T ss_dssp ---------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCS-------CHHHHHHH
T ss_pred cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCC-------CHHHHHHH
Confidence 4567999999999999999999999999996 56777888999999999999998876 24445555
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+...+.| +++|+||+|+.... .....+. .+++ -+++++||++|.|+++|.
T Consensus 105 ~~l~~~~~p-vilv~NK~D~~~~~----------~~~~~~~-~lg~-----~~~~~iSA~~g~gv~~L~ 156 (436)
T 2hjg_A 105 KILYRTKKP-VVLAVNKLDNTEMR----------ANIYDFY-SLGF-----GEPYPISGTHGLGLGDLL 156 (436)
T ss_dssp HHHTTCCSC-EEEEEECCCC---------------CCCSSG-GGSS-----CCCEECBTTTTBTHHHHH
T ss_pred HHHHHcCCC-EEEEEECccCccch----------hhHHHHH-HcCC-----CCeEEEeCcCCCChHHHH
Confidence 556667888 89999999975210 0011111 2222 267999999999987753
No 130
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.59 E-value=7e-15 Score=101.39 Aligned_cols=114 Identities=14% Similarity=0.118 Sum_probs=75.0
Q ss_pred eEEEEeCCe--EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH-HHHcCCCcEEEEEe
Q psy10355 22 RAYFETDRK--HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML-AKTAGVKHLVVLIN 98 (156)
Q Consensus 22 ~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ivv~N 98 (156)
...+..++. .+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+...+.. ....+.| +++|+|
T Consensus 56 ~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~ilv~n 131 (183)
T 3kkq_A 56 LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKA---SFEHVDRFHQLILRVKDRESFP-MILVAN 131 (183)
T ss_dssp EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHTSSCCC-EEEEEE
T ss_pred EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-EEEEEE
Confidence 344445554 4667999999999988999999999999999998742 22212223222222 2235677 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecc-cCCCCccCC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGE-LEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~-~g~gi~~l~ 151 (156)
|+|+....... .+ +...+.+.. +++++++||+ +|+|++++.
T Consensus 132 K~Dl~~~~~v~--~~----~~~~~~~~~------~~~~~~~Sa~~~~~~v~~l~ 173 (183)
T 3kkq_A 132 KVDLMHLRKVT--RD----QGKEMATKY------NIPYIETSAKDPPLNVDKTF 173 (183)
T ss_dssp CTTCSTTCCSC--HH----HHHHHHHHH------TCCEEEEBCSSSCBSHHHHH
T ss_pred CCCchhccCcC--HH----HHHHHHHHh------CCeEEEeccCCCCCCHHHHH
Confidence 99985321111 11 233333444 3589999999 999998753
No 131
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.59 E-value=3.5e-15 Score=117.75 Aligned_cols=121 Identities=17% Similarity=0.102 Sum_probs=65.3
Q ss_pred HHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHH--------HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVP--------NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~--------~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
....+|+|.+.....+..++..+.+|||||++++.. .+..+++.+|++++|+|++++.. +.....+...
T Consensus 261 vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s---~~~~~~~~~~ 337 (476)
T 3gee_A 261 VSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERL---DDELTEIREL 337 (476)
T ss_dssp ------------CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSS---GGGHHHHHHH
T ss_pred cCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcc---hhhhHHHHHH
Confidence 345679999999999999999999999999977643 34557889999999999988651 0000022222
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+..+ .+.| +++|+||+|+...... .. +++.. .+ ..+++++||++|+|+++|.
T Consensus 338 l~~l--~~~p-iIvV~NK~Dl~~~~~~----~~--~~l~~----~~-----~~~~i~vSAktg~GI~eL~ 389 (476)
T 3gee_A 338 KAAH--PAAK-FLTVANKLDRAANADA----LI--RAIAD----GT-----GTEVIGISALNGDGIDTLK 389 (476)
T ss_dssp HHHC--TTSE-EEEEEECTTSCTTTHH----HH--HHHHH----HH-----TSCEEECBTTTTBSHHHHH
T ss_pred HHhc--CCCC-EEEEEECcCCCCccch----hH--HHHHh----cC-----CCceEEEEECCCCCHHHHH
Confidence 2222 2567 8999999998643211 11 11211 11 1488999999999998764
No 132
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.59 E-value=1.7e-15 Score=104.13 Aligned_cols=112 Identities=17% Similarity=0.143 Sum_probs=76.1
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChH--------HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFV--------PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~--------~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.+|+|.+.....+.+++..+.+|||||++++. .....+++.+|++++|+|+++... + .....+..
T Consensus 35 ~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s---~----~~~~~~~~ 107 (172)
T 2gj8_A 35 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDA---V----DPAEIWPE 107 (172)
T ss_dssp STTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCC---C----SHHHHCHH
T ss_pred CCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCC---H----HHHHHHHH
Confidence 45778887778888889999999999997531 123456899999999999987541 1 12222222
Q ss_pred HHH---cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKT---AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~---~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+.. .++| +++|+||+|+...... +......+++++||++|+|+++|.
T Consensus 108 ~~~~~~~~~p-~ilv~NK~Dl~~~~~~-------------------~~~~~~~~~~~~SA~~g~gv~~l~ 157 (172)
T 2gj8_A 108 FIARLPAKLP-ITVVRNKADITGETLG-------------------MSEVNGHALIRLSARTGEGVDVLR 157 (172)
T ss_dssp HHHHSCTTCC-EEEEEECHHHHCCCCE-------------------EEEETTEEEEECCTTTCTTHHHHH
T ss_pred HHHhcccCCC-EEEEEECccCCcchhh-------------------hhhccCCceEEEeCCCCCCHHHHH
Confidence 222 3578 8999999997421000 000024689999999999998764
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.58 E-value=6.2e-15 Score=116.50 Aligned_cols=114 Identities=21% Similarity=0.186 Sum_probs=83.0
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCc-ChH--------HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHK-SFV--------PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~-~~~--------~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|+|.+.....+.+++..+.+|||||++ ++. ..+..+++.+|++|+|+|++++. ..+..+.+.
T Consensus 274 ~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~-------s~~~~~il~ 346 (482)
T 1xzp_A 274 IPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPL-------DEEDRKILE 346 (482)
T ss_dssp SSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCC-------CHHHHHHHH
T ss_pred CCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCC-------CHHHHHHHH
Confidence 46899999999999999999999999998 542 45677889999999999998764 122333333
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+ .+.| +++|+||+|+... .. .++ +..++ + ...+++++||++|+|+++|.
T Consensus 347 ~l--~~~p-iivV~NK~DL~~~-~~---~~~----~~~~~---~----~~~~~i~iSAktg~Gi~eL~ 396 (482)
T 1xzp_A 347 RI--KNKR-YLVVINKVDVVEK-IN---EEE----IKNKL---G----TDRHMVKISALKGEGLEKLE 396 (482)
T ss_dssp HH--TTSS-EEEEEEECSSCCC-CC---HHH----HHHHH---T----CSTTEEEEEGGGTCCHHHHH
T ss_pred Hh--cCCC-EEEEEECcccccc-cC---HHH----HHHHh---c----CCCcEEEEECCCCCCHHHHH
Confidence 33 3677 8999999998632 11 122 22221 1 13589999999999998764
No 134
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.58 E-value=1.6e-17 Score=116.65 Aligned_cols=123 Identities=16% Similarity=0.125 Sum_probs=74.3
Q ss_pred HHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH
Q psy10355 9 RQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK 86 (156)
Q Consensus 9 ~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
..+..++++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++... |. .....+..+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~ 132 (199)
T 3l0i_B 59 TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---FN---NVKQWLQEID 132 (199)
T ss_dssp CCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHH---HH---HHHHHHHHHH
T ss_pred CCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHH
Confidence 344555666666666677766 579999999999998888899999999999999987531 11 1111222222
Q ss_pred H---cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 87 T---AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 87 ~---~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
. .+.| +++|+||+|+........ +....+.+.. +++++++||++|.|++++
T Consensus 133 ~~~~~~~p-~ilv~nK~Dl~~~~~v~~------~~~~~~~~~~------~~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 133 RYASENVN-KLLVGNKCDLTTKKVVDY------TTAKEFADSL------GIPFLETSAKNATNVEQS 186 (199)
T ss_dssp SCC-CCSE-EEEC-CCSSCC--CCCCS------CC-CHHHHTT------TCCBCCCCC---HHHHHH
T ss_pred HhccCCCC-EEEEEECccCCccccCCH------HHHHHHHHHc------CCeEEEEECCCCCCHHHH
Confidence 2 2567 899999999853211100 1122223333 468999999999998875
No 135
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.58 E-value=1.7e-15 Score=104.29 Aligned_cols=113 Identities=12% Similarity=0.121 Sum_probs=72.7
Q ss_pred eEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH-HHHHHcCCCcEEEEEe
Q psy10355 22 RAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA-MLAKTAGVKHLVVLIN 98 (156)
Q Consensus 22 ~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ivv~N 98 (156)
...+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+...+ ......+.| +++|+|
T Consensus 44 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~ilv~n 119 (181)
T 3t5g_A 44 TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIK---SFEVIKVIHGKLLDMVGKVQIP-IMLVGN 119 (181)
T ss_dssp EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHC----CC-EEEEEE
T ss_pred EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEE
Confidence 34445555 56899999999999888889999999999999998732 111111122111 222234678 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
|+|+...... .. ++...+.+.. +++++++||++|+|++++
T Consensus 120 K~Dl~~~~~~--~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l 159 (181)
T 3t5g_A 120 KKDLHMERVI--SY----EEGKALAESW------NAAFLESSAKENQTAVDV 159 (181)
T ss_dssp CTTCTTTCCS--CH----HHHHHHHHHT------TCEEEECCTTSHHHHHHH
T ss_pred Cccchhccee--cH----HHHHHHHHHh------CCcEEEEecCCCCCHHHH
Confidence 9998532111 11 1233334444 458999999999998765
No 136
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.58 E-value=4.5e-15 Score=103.52 Aligned_cols=114 Identities=14% Similarity=0.074 Sum_probs=73.2
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC-cchHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG-GQTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
.+..++ ..+.+|||||++++...+..+++++|++++|+|+++.. +|... ..+...+.. ...+.| +++|+||+
T Consensus 63 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~-~~~~~p-~ilv~nK~ 137 (194)
T 3reg_A 63 VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRT---SFDNISTKWEPEIKH-YIDTAK-TVLVGLKV 137 (194)
T ss_dssp EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HHHHHHHTHHHHHHH-HCTTSE-EEEEEECG
T ss_pred EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHH---HHHHHHHHHHHHHHH-hCCCCC-EEEEEECh
Confidence 344444 45799999999999999999999999999999998743 11110 112222221 112567 89999999
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 101 DDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 101 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+......... .++...+.+..++ .+++++||++|+|++++.
T Consensus 138 Dl~~~~~~~~~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 179 (194)
T 3reg_A 138 DLRKDGSDDVT----KQEGDDLCQKLGC-----VAYIEASSVAKIGLNEVF 179 (194)
T ss_dssp GGCCTTTTCCC----HHHHHHHHHHHTC-----SCEEECBTTTTBSHHHHH
T ss_pred hhccCCCCccc----HHHHHHHHHhcCC-----CEEEEeecCCCCCHHHHH
Confidence 98632111111 1223334444443 239999999999998753
No 137
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.58 E-value=5.7e-15 Score=104.68 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=70.4
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-------cCCCcEEEEEeCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-------AGVKHLVVLINKMD 101 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ivv~NK~D 101 (156)
...+.||||||++++...+..+++.+|++|+|+|+++.. .......++.. .+.| +++|+||+|
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~---------s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~D 152 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQ---------SFLNVRNWMSQLQANAYCENPD-IVLIGNKAD 152 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHH---------HHHHHHHHHHTCCCCCTTTCCE-EEEEEECTT
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHH---------HHHHHHHHHHHHHHhcCcCCCC-EEEEEECCc
Confidence 567999999999999999999999999999999997743 11111122221 3456 899999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 102 DPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...... . .+++..+.+.. +++++++||++|.|++++.
T Consensus 153 l~~~~~v--~----~~~~~~~~~~~------~~~~~~~Sa~~g~gi~~l~ 190 (217)
T 2f7s_A 153 LPDQREV--N----ERQARELADKY------GIPYFETSAATGQNVEKAV 190 (217)
T ss_dssp CGGGCCS--C----HHHHHHHHHHT------TCCEEEEBTTTTBTHHHHH
T ss_pred ccccccc--C----HHHHHHHHHHC------CCcEEEEECCCCCCHHHHH
Confidence 8532111 0 11233334443 3589999999999998753
No 138
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.58 E-value=6.8e-15 Score=116.59 Aligned_cols=118 Identities=15% Similarity=0.173 Sum_probs=81.6
Q ss_pred ceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCC
Q psy10355 16 KTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVK 91 (156)
Q Consensus 16 ~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 91 (156)
-|++.....+.+++..+.+|||||++++...+..+++.+|++|+|+|+++.. +| ......+..+.. .++|
T Consensus 352 ~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~---s~---~~~~~~~~~~~~~~~~~~~p 425 (497)
T 3lvq_E 352 PTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD---RI---DEARQELHRIINDREMRDAI 425 (497)
T ss_dssp CCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGG---GH---HHHHHHHHHHHTSGGGTTCE
T ss_pred CccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchh---HH---HHHHHHHHHHhhhhhcCCCc
Confidence 3666777778889999999999999999999999999999999999998743 11 111112222211 3677
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCC--CCCCCeEEEeecccCCCCccCC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFN--AAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|+|+||+|+..... ..++.+ ..+.. ....++++++||++|+|++++.
T Consensus 426 -~ilv~NK~Dl~~~~~----~~~~~~-------~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 475 (497)
T 3lvq_E 426 -ILIFANKQDLPDAMK----PHEIQE-------KLGLTRIRDRNWYVQPSCATSGDGLYEGL 475 (497)
T ss_dssp -EEEEEECCSSSSCCC----HHHHHH-------HTTCTTCCSSCEEEEECBTTTTBTHHHHH
T ss_pred -EEEEEECCCCCcCCC----HHHHHH-------HhchhhhhcCCeEEEEEECCCCCCHHHHH
Confidence 899999999864221 112111 12211 1135689999999999998764
No 139
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.58 E-value=2.5e-15 Score=105.57 Aligned_cols=116 Identities=11% Similarity=0.166 Sum_probs=73.8
Q ss_pred EEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH--cCCCcEEEEEeCC
Q psy10355 25 FETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT--AGVKHLVVLINKM 100 (156)
Q Consensus 25 ~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~NK~ 100 (156)
+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++... .......+.. .+.| +++|+||+
T Consensus 66 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~--~~~~~~~~~~~~~~~p-iilv~nK~ 139 (201)
T 2gco_A 66 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD---SLENI--PEKWTPEVKHFCPNVP-IILVGNKK 139 (201)
T ss_dssp EEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HHHHH--HHTHHHHHHHHSTTCC-EEEEEECG
T ss_pred EEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHH---HHHHH--HHHHHHHHHHhCCCCC-EEEEEecH
Confidence 44554 57999999999999888889999999999999997642 11100 0111222222 2678 89999999
Q ss_pred CCCCcchhHHHHHH------HHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 101 DDPTVMWSEARYNE------CKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 101 Dl~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+.........+.. ..++...+.+..+ ..+++++||++|+|++++.
T Consensus 140 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~SA~~g~gi~~l~ 191 (201)
T 2gco_A 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRIS-----AFGYLECSAKTKEGVREVF 191 (201)
T ss_dssp GGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTT-----CSEEEECCTTTCTTHHHHH
T ss_pred HhhcCccchhhhcccccCcCCHHHHHHHHHhCC-----CcEEEEeeCCCCCCHHHHH
Confidence 98643211111100 0112333444443 2389999999999998764
No 140
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.57 E-value=5.2e-15 Score=103.65 Aligned_cols=123 Identities=12% Similarity=0.069 Sum_probs=75.0
Q ss_pred eeeeEEEEeCCe--EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEE
Q psy10355 19 EVGRAYFETDRK--HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVV 95 (156)
Q Consensus 19 ~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iv 95 (156)
+.....+..++. .+.+|||||++++...+..+++++|++++|+|+++.. +|.... .+...+... ..+.| +++
T Consensus 55 ~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~-~~~~p-~il 129 (201)
T 2q3h_A 55 DNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPS---SFQNVSEKWVPEIRCH-CPKAP-IIL 129 (201)
T ss_dssp EEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHH---HHHHHHHTHHHHHHHH-CSSSC-EEE
T ss_pred ceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHH---HHHHHHHHHHHHHHHh-CCCCC-EEE
Confidence 333445556664 6779999999999888888999999999999998743 111000 111111111 12678 899
Q ss_pred EEeCCCCCCcchhHHHH------HHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 96 LINKMDDPTVMWSEARY------NECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 96 v~NK~Dl~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+||+|+.........+ ....++...+.+..+ .++++++||++|.|++++.
T Consensus 130 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~Sa~~g~gi~~l~ 186 (201)
T 2q3h_A 130 VGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK-----AASYIECSALTQKNLKEVF 186 (201)
T ss_dssp EEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-----CSEEEECCTTTCTTHHHHH
T ss_pred EEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC-----CcEEEEEecCCCCCHHHHH
Confidence 99999985321000000 000112333334443 2489999999999998753
No 141
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.57 E-value=8.8e-16 Score=105.67 Aligned_cols=112 Identities=15% Similarity=0.103 Sum_probs=67.9
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH-HHHHHHHH--cCCCcEEEEEeCCCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR-EHAMLAKT--AGVKHLVVLINKMDDPT 104 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~ivv~NK~Dl~~ 104 (156)
....+.+|||||++++...+..+++++|++++|+|+++.. +|. ... ..+..+.. .+.| +++++||+|+..
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 126 (182)
T 3bwd_D 54 ATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYE---NVSKKWIPELKHYAPGVP-IVLVGTKLDLRD 126 (182)
T ss_dssp ----CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHH---HHH---HHHHTHHHHHHHHCTTCC-EEEEEECHHHHT
T ss_pred EEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEEechhhhc
Confidence 3456789999999999989999999999999999997743 111 111 11122222 2677 899999999753
Q ss_pred cchhHHH----HHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 105 VMWSEAR----YNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 105 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
....... .....++...+.+..++ .+++++||++|+|++++.
T Consensus 127 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 172 (182)
T 3bwd_D 127 DKQFFIDHPGAVPITTVQGEELKKLIGA-----PAYIECSSKSQENVKGVF 172 (182)
T ss_dssp CHHHHHHC--CCCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHHH
T ss_pred CcccccccccCCCCCHHHHHHHHHHcCC-----CEEEEEECCCCCCHHHHH
Confidence 2110000 00011223334444432 489999999999998753
No 142
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=1.3e-14 Score=102.34 Aligned_cols=115 Identities=12% Similarity=0.184 Sum_probs=72.9
Q ss_pred EEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcch-HHHHHHHHH--cCCCcEEEEEeC
Q psy10355 25 FETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQT-REHAMLAKT--AGVKHLVVLINK 99 (156)
Q Consensus 25 ~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~ivv~NK 99 (156)
+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. +|. .. ...+..+.. .+.| +++|+||
T Consensus 66 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iilv~nK 138 (207)
T 2fv8_A 66 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPD---SLE---NIPEKWVPEVKHFCPNVP-IILVANK 138 (207)
T ss_dssp EEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHH---HHH---HHHHTHHHHHHHHSTTCC-EEEEEEC
T ss_pred EEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEEEc
Confidence 44555 57999999999999888889999999999999997642 111 11 111222222 2678 8999999
Q ss_pred CCCCCcchhHHHHHHH------HHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 100 MDDPTVMWSEARYNEC------KDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|+.........+..+ .++...+....+ ..+++++||++|.|++++.
T Consensus 139 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~SA~~g~gi~el~ 191 (207)
T 2fv8_A 139 KDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQ-----AYDYLECSAKTKEGVREVF 191 (207)
T ss_dssp GGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTT-----CSEEEECCTTTCTTHHHHH
T ss_pred hhhhccccchhhhhhcccCCCCHHHHHHHHHhcC-----CCEEEEeeCCCCCCHHHHH
Confidence 9986421111111000 011223333332 2389999999999998753
No 143
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.57 E-value=3.3e-15 Score=106.05 Aligned_cols=119 Identities=14% Similarity=0.103 Sum_probs=60.2
Q ss_pred EEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEEEEeC
Q psy10355 23 AYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVVLINK 99 (156)
Q Consensus 23 ~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~NK 99 (156)
..+..++ ..+.+|||||++++...+..+++++|++++|+|+++.. +|.... .+...+... ..++| +++|+||
T Consensus 73 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~-~~~~p-iilv~nK 147 (214)
T 2j1l_A 73 VNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPN---SFDNIFNRWYPEVNHF-CKKVP-IIVVGCK 147 (214)
T ss_dssp EEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCHH---HHHHHHHTHHHHHHHH-CSSCC-EEEEEEC
T ss_pred EEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHHh-CCCCC-EEEEEEC
Confidence 3445554 47999999999999999999999999999999998743 111000 111111111 13678 8999999
Q ss_pred CCCCCcchhHHHHH------HHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 100 MDDPTVMWSEARYN------ECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|+.........+. ...++...+.+..++ .+++++||++|.|++++.
T Consensus 148 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~el~ 200 (214)
T 2j1l_A 148 TDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGA-----VAYLECSARLHDNVHAVF 200 (214)
T ss_dssp GGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECBTTTTBSHHHHH
T ss_pred hhhhccchhhhhhcccccCcccHHHHHHHHHhcCC-----CEEEEecCCCCCCHHHHH
Confidence 99864311110000 001123344444432 489999999999998763
No 144
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.56 E-value=6.4e-15 Score=101.16 Aligned_cols=110 Identities=12% Similarity=0.037 Sum_probs=66.9
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---cCCCcEEEEEe
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT---AGVKHLVVLIN 98 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~N 98 (156)
.+..++ ..+.+|||||+++ ..+++++|++++|+|+++.. +|.....+...+..... .++| +++|+|
T Consensus 46 ~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~---s~~~~~~~~~~i~~~~~~~~~~~p-iilv~n 116 (178)
T 2iwr_A 46 EMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDEN---SFQAVSRLHGQLSSLRGEGRGGLA-LALVGT 116 (178)
T ss_dssp EEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHCSSSCCCE-EEEEEE
T ss_pred EEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHH---HHHHHHHHHHHHHHHHhcCCCCCC-EEEEEE
Confidence 344444 5689999999987 45778899999999998743 11111112112222222 2567 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+|+..........++ ...+.+.. .+++++++||++|+|++++.
T Consensus 117 K~Dl~~~~~~~v~~~~----~~~~~~~~-----~~~~~~~~Sa~~~~~i~~lf 160 (178)
T 2iwr_A 117 QDRISASSPRVVGDAR----ARALXADM-----KRCSYYETXATYGLNVDRVF 160 (178)
T ss_dssp CTTCBTTBCCCSCHHH----HHHHHHHH-----SSEEEEEEBTTTTBTHHHHH
T ss_pred CccccccccCcCCHHH----HHHHHHhh-----cCCeEEEEeccccCCHHHHH
Confidence 9998421111111122 22233332 14689999999999998753
No 145
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.56 E-value=2.8e-15 Score=105.93 Aligned_cols=116 Identities=16% Similarity=0.130 Sum_probs=71.6
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH-HHHHHHHH--cCCCcEEEEEe
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR-EHAMLAKT--AGVKHLVVLIN 98 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~ivv~N 98 (156)
.+..++ ..+.+|||||+++|...+..+++.+|++++|+|+++.. +|. ... ..+..+.. .+.| +++|+|
T Consensus 49 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iilv~n 121 (212)
T 2j0v_A 49 NVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKA---SYE---NVLKKWMPELRRFAPNVP-IVLVGT 121 (212)
T ss_dssp EEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHH---HHH---HHHHTHHHHHHHHCTTCC-EEEEEE
T ss_pred EEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEEe
Confidence 344444 58999999999999988999999999999999997743 111 111 11122222 2678 899999
Q ss_pred CCCCCCcchhHHH-H-HHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 99 KMDDPTVMWSEAR-Y-NECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+|+......... . ....++...+.+..++ .+++++||++|+|++++.
T Consensus 122 K~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~ 171 (212)
T 2j0v_A 122 KLDLRDDKGYLADHTNVITSTQGEELRKQIGA-----AAYIECSSKTQQNVKAVF 171 (212)
T ss_dssp CHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHHH
T ss_pred CHHhhhCccccccccCCCCHHHHHHHHHHcCC-----ceEEEccCCCCCCHHHHH
Confidence 9997532110000 0 0001223334444432 489999999999998753
No 146
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=1.1e-14 Score=101.75 Aligned_cols=106 Identities=20% Similarity=0.119 Sum_probs=70.1
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.+|||||+++ ...+..+++.+|++++|+|+++.. +|.....+...+.... ..+.| +++|+||+|+.....
T Consensus 75 ~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~ 149 (196)
T 2atv_A 75 VVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRG---SFEEVLPLKNILDEIKKPKNVT-LILVGNKADLDHSRQ 149 (196)
T ss_dssp EEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGGGGGCC
T ss_pred EEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHhhCCCCCc-EEEEEECcccccccc
Confidence 36799999999998 777888999999999999998732 2221122222222222 24678 899999999753211
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCC-CCccCC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEK-NPLLLG 151 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~-gi~~l~ 151 (156)
. ..++ ...+.+.. +++++++||++|. |++++.
T Consensus 150 v--~~~~----~~~~~~~~------~~~~~~~Sa~~g~~gi~~l~ 182 (196)
T 2atv_A 150 V--STEE----GEKLATEL------ACAFYECSACTGEGNITEIF 182 (196)
T ss_dssp S--CHHH----HHHHHHHH------TSEEEECCTTTCTTCHHHHH
T ss_pred c--CHHH----HHHHHHHh------CCeEEEECCCcCCcCHHHHH
Confidence 1 1111 22233333 3689999999999 988753
No 147
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.55 E-value=1.4e-14 Score=113.38 Aligned_cols=124 Identities=22% Similarity=0.201 Sum_probs=79.9
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHH------------HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVP------------NMIGGTAQADLAVLVISARKGEFETGFDRGGQTRE 80 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~------------~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~ 80 (156)
.+|+|.+.....+.+++..+.+|||||++++.. ....+++.+|++++|+|++.+. ..+...
T Consensus 211 ~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~-------~~~~~~ 283 (439)
T 1mky_A 211 IPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGI-------TRQDQR 283 (439)
T ss_dssp CC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCC-------CHHHHH
T ss_pred CCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCC-------CHHHHH
Confidence 468899999999999999999999999854432 2345778899999999998765 233444
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 81 HAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 81 ~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
....+...+.| +++++||+|+.... ....++..+.+...+... ...+++++||++|.|+++|.
T Consensus 284 i~~~l~~~~~~-~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~SA~~g~gv~~l~ 346 (439)
T 1mky_A 284 MAGLMERRGRA-SVVVFNKWDLVVHR--EKRYDEFTKLFREKLYFI-----DYSPLIFTSADKGWNIDRMI 346 (439)
T ss_dssp HHHHHHHTTCE-EEEEEECGGGSTTG--GGCHHHHHHHHHHHCGGG-----TTSCEEECBTTTTBSHHHHH
T ss_pred HHHHHHHcCCC-EEEEEECccCCCch--hhHHHHHHHHHHHHhccC-----CCCcEEEEECCCCCCHHHHH
Confidence 55556667888 89999999986421 111233333333222222 24689999999999998763
No 148
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.55 E-value=2.1e-15 Score=107.19 Aligned_cols=113 Identities=13% Similarity=0.072 Sum_probs=71.5
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCC-CcchHHHHHHHHHcCCCcEEEEEeCCCCCCcc
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR-GGQTREHAMLAKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
....+.+|||||++++...+..+++.+|++|+|+|+++.. +|.. ...+...+... ..+.| +++|+||+|+....
T Consensus 73 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~i~~~-~~~~p-iilv~nK~Dl~~~~ 147 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPE---TVDSALKKWRTEILDY-CPSTR-VLLIGCKTDLRTDL 147 (214)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTH---HHHHHHTHHHHHHHHH-CTTSE-EEEEEECGGGGGCH
T ss_pred EEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHH---HHHHHHHHHHHHHHHh-CCCCC-EEEEEEChhhccch
Confidence 4467999999999999999999999999999999998753 1111 11222222211 12667 89999999985310
Q ss_pred hhHHH------HHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCC-CccC
Q psy10355 107 WSEAR------YNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKN-PLLL 150 (156)
Q Consensus 107 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~g-i~~l 150 (156)
..... .....++...+.+..++ .+++++||++|.| ++++
T Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~SA~~g~g~v~~l 193 (214)
T 3q3j_B 148 STLMELSHQKQAPISYEQGCAIAKQLGA-----EIYLEGSAFTSEKSIHSI 193 (214)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHHTC-----SEEEECCTTTCHHHHHHH
T ss_pred hhhhhhcccccCccCHHHHHHHHHHcCC-----CEEEEeccCCCcccHHHH
Confidence 00000 00001223334444432 2899999999998 8765
No 149
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.32 E-value=3.8e-16 Score=109.87 Aligned_cols=115 Identities=13% Similarity=0.129 Sum_probs=71.5
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.+|||||++++...+..+++++|++++|+|+++.. +|.... .+...+.... .+.| +++|+||+|+.....
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~---s~~~~~~~~~~~l~~~~-~~~p-iilv~NK~Dl~~~~~ 151 (204)
T 3th5_A 77 PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPA---SFENVRAKWYPEVRHHC-PNTP-IILVGTKLDLRDDKD 151 (204)
Confidence 356779999999999999999999999999999997743 221111 2222222111 1677 899999999863211
Q ss_pred hHHHHHH------HHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCCC
Q psy10355 108 SEARYNE------CKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGIE 153 (156)
Q Consensus 108 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~~ 153 (156)
....... ..++...+.+..+ ..+++++||++|+|++++.+.
T Consensus 152 ~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~vSA~~g~gi~~l~~~ 198 (204)
T 3th5_A 152 TIEKLKEKKLTPITYPQGLAMAKEIG-----AVKYLECSALTQRGLKTVFDE 198 (204)
Confidence 1100000 0111222222221 137899999999999988653
No 150
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.54 E-value=4.7e-15 Score=104.13 Aligned_cols=108 Identities=17% Similarity=0.054 Sum_probs=69.4
Q ss_pred eCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH-HHHHcCCCcEEEEEeCCCCCCc
Q psy10355 27 TDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM-LAKTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 27 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ivv~NK~Dl~~~ 105 (156)
.....+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+...+. .....++| +++|+||+|+...
T Consensus 69 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~ 144 (201)
T 3oes_A 69 KDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLH---SFQVIESLYQKLHEGHGKTRVP-VVLVGNKADLSPE 144 (201)
T ss_dssp --CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHH---HHHHHHHHHHHHHC-----CCC-EEEEEECTTCGGG
T ss_pred CEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCccc
Confidence 35678999999999999888999999999999999998642 1111111111111 11123677 8999999998532
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 106 MWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.... ..+ ...+.+.. +++++++||++|.|++++
T Consensus 145 ~~v~--~~~----~~~~~~~~------~~~~~~~Sa~~~~~v~~l 177 (201)
T 3oes_A 145 REVQ--AVE----GKKLAESW------GATFMESSARENQLTQGI 177 (201)
T ss_dssp CCSC--HHH----HHHHHHHH------TCEEEECCTTCHHHHHHH
T ss_pred cccC--HHH----HHHHHHHh------CCeEEEEeCCCCCCHHHH
Confidence 1111 111 22233333 358999999999998875
No 151
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.54 E-value=1e-14 Score=101.32 Aligned_cols=108 Identities=13% Similarity=0.010 Sum_probs=68.9
Q ss_pred EEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCcEEEE
Q psy10355 23 AYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKHLVVL 96 (156)
Q Consensus 23 ~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivv 96 (156)
..+.+++ ..+.+|||||++++. +++.+|++++|+|+++.. +|. .....+..+.. .+.| ++++
T Consensus 58 ~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-iilv 125 (184)
T 3ihw_A 58 KEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEI---SFQ---TVYNYFLRLCSFRNASEVP-MVLV 125 (184)
T ss_dssp EEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHH---HHH---HHHHHHHHHHTTSCGGGSC-EEEE
T ss_pred EEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhcCCCCCC-EEEE
Confidence 4455566 567889999999887 788899999999998743 111 11112222222 3567 8999
Q ss_pred EeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 97 INKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 97 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+||+|+..........+ +...+.+..+ .++++++||++|+|++++.
T Consensus 126 ~nK~Dl~~~~~~~v~~~----~~~~~~~~~~-----~~~~~e~Sa~~~~gv~~lf 171 (184)
T 3ihw_A 126 GTQDAISAANPRVIDDS----RARKLSTDLK-----RCTYYETCATYGLNVERVF 171 (184)
T ss_dssp EECTTCBTTBCCCSCHH----HHHHHHHHTT-----TCEEEEEBTTTTBTHHHHH
T ss_pred EECcccccccccccCHH----HHHHHHHHcC-----CCeEEEecCCCCCCHHHHH
Confidence 99999842111111111 2333344442 3689999999999998753
No 152
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.52 E-value=8.3e-15 Score=101.87 Aligned_cols=106 Identities=14% Similarity=0.049 Sum_probs=65.5
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---cCCCcEEEEEeCCCCCCc
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT---AGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~NK~Dl~~~ 105 (156)
...+.+|||||++++... ..+++.+|++++|+|+++.. +|.....+...+..... .+.| +++|+||+|+...
T Consensus 68 ~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~ 142 (187)
T 3c5c_A 68 PVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQ---SFDSSSSYLELLALHAKETQRSIP-ALLLGNKLDMAQY 142 (187)
T ss_dssp EEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGGGGGG
T ss_pred EEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhhccCCCCC-EEEEEECcchhhc
Confidence 357899999999887653 56889999999999998632 22211222222222211 4678 8999999997531
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeec-ccCCCCccCC
Q psy10355 106 MWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSG-ELEKNPLLLG 151 (156)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa-~~g~gi~~l~ 151 (156)
... ..+ +...+.+.. +++++++|| ++|+|++++.
T Consensus 143 ~~v--~~~----~~~~~~~~~------~~~~~e~Sa~~~g~gv~~lf 177 (187)
T 3c5c_A 143 RQV--TKA----EGVALAGRF------GCLFFEVSACLDFEHVQHVF 177 (187)
T ss_dssp CSS--CHH----HHHHHHHHH------TCEEEECCSSSCSHHHHHHH
T ss_pred Ccc--CHH----HHHHHHHHc------CCcEEEEeecCccccHHHHH
Confidence 110 111 223333444 358999999 8999988753
No 153
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.51 E-value=2.4e-14 Score=107.32 Aligned_cols=124 Identities=15% Similarity=0.152 Sum_probs=76.8
Q ss_pred ceeeeeeEEEEeCCeE--EEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH-HHHHHHHH--cCC
Q psy10355 16 KTVEVGRAYFETDRKH--FTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR-EHAMLAKT--AGV 90 (156)
Q Consensus 16 ~t~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~ 90 (156)
++.+.....+..++.. +.+|||||++++...+..+++.+|++++|+|+++.. +|. ... ..+..+.. .+.
T Consensus 187 t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~ 260 (332)
T 2wkq_A 187 TVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPA---SFH---HVRAKWYPEVRHHCPNT 260 (332)
T ss_dssp CSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHH---HHH---HHHHTHHHHHHHHCTTS
T ss_pred cccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHH---HHH---HHHHHHHHHHHhhCCCC
Confidence 3344444455566654 559999999999988999999999999999998743 111 111 11122222 267
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHH------HHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNE------CKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
| +++|+||+|+.........+.. ..++...+.+..++ .+++++||++|+|++++.
T Consensus 261 p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 321 (332)
T 2wkq_A 261 P-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTVF 321 (332)
T ss_dssp C-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHH
T ss_pred c-EEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCC-----cEEEEecCCCCcCHHHHH
Confidence 8 8999999997532111100000 01123334444432 489999999999998764
No 154
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.51 E-value=4.5e-15 Score=116.63 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=78.4
Q ss_pred HHhhcCceeeeeeEEEEeCCeEEEEEeCCC--------CcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 10 QKREKGKTVEVGRAYFETDRKHFTILDAPG--------HKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG--------~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
.+..+|+|.+.....+.+.+..+.+||||| ++++...+..+++.+|++|+|+|+..+. .....+.
T Consensus 51 v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~-------~~~d~~l 123 (456)
T 4dcu_A 51 VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGV-------TAADEEV 123 (456)
T ss_dssp ----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCS-------CHHHHHH
T ss_pred cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCC-------ChHHHHH
Confidence 345679999999999999999999999999 5667778899999999999999998876 3555666
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
...+...+.| +++|+||+|+.... .....+ ...++ ...+++||++|.|+.+|
T Consensus 124 ~~~l~~~~~p-vilV~NK~D~~~~~----------~~~~e~-~~lg~-----~~~~~iSA~~g~gv~~L 175 (456)
T 4dcu_A 124 AKILYRTKKP-VVLAVNKLDNTEMR----------ANIYDF-YSLGF-----GEPYPISGTHGLGLGDL 175 (456)
T ss_dssp HHHHTTCCSC-EEEEEECC-------------------CCS-GGGSS-----SSEEECCTTTCTTHHHH
T ss_pred HHHHHHcCCC-EEEEEECccchhhh----------hhHHHH-HHcCC-----CceEEeecccccchHHH
Confidence 6777777888 89999999975210 001111 11222 25679999999998775
No 155
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.50 E-value=8e-15 Score=101.50 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=70.3
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC-cchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG-GQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.+|||||+++|...+..+++.+|++++|+|+++.. +|... ..+...+... ..+.| +++|+||+|+.....
T Consensus 54 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~i~~~-~~~~p-iilv~nK~Dl~~~~~ 128 (184)
T 1m7b_A 54 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE---TLDSVLKKWKGEIQEF-CPNTK-MLLVGCKSDLRTDVS 128 (184)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HHHHHHHTHHHHHHHH-CTTCE-EEEEEECGGGGGCHH
T ss_pred EEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHH---HHHHHHHHHHHHHHHH-CCCCC-EEEEEEcchhhcchh
Confidence 367999999999999888888999999999999998742 11111 1122222111 13567 899999999853210
Q ss_pred hHHHHHHH---------HHHHHHHHHHcCCCCCCCCeEEEeecc-cCCCCccCC
Q psy10355 108 SEARYNEC---------KDKILPYLKKLGFNAAKDLSFMPCSGE-LEKNPLLLG 151 (156)
Q Consensus 108 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~~Sa~-~g~gi~~l~ 151 (156)
...++ .++...+.+..+ ..+++++||+ +|.|++++.
T Consensus 129 ---~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~gi~~l~ 174 (184)
T 1m7b_A 129 ---TLVELSNHRQTPVSYDQGANMAKQIG-----AATYIECSALQSENSVRDIF 174 (184)
T ss_dssp ---HHHHHHTTTCCCCCHHHHHHHHHHHT-----CSEEEECBTTTBHHHHHHHH
T ss_pred ---hHhhhhhcccCCCCHHHHHHHHHHcC-----CcEEEEeeecCCCcCHHHHH
Confidence 00100 122333444443 2589999999 688987753
No 156
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.49 E-value=3.2e-14 Score=101.26 Aligned_cols=114 Identities=18% Similarity=0.091 Sum_probs=69.1
Q ss_pred eEEEEeCCe--EEEEEeCCCCcC-hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-HHcCCCcEEEEE
Q psy10355 22 RAYFETDRK--HFTILDAPGHKS-FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-KTAGVKHLVVLI 97 (156)
Q Consensus 22 ~~~~~~~~~--~~~iiDtpG~~~-~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ivv~ 97 (156)
...+..++. .+.+|||+|... +......+++.+|++++|+|.++.. +|.....+...+... ...++| +++|+
T Consensus 77 ~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~---sf~~~~~~~~~l~~~~~~~~~p-iilVg 152 (211)
T 2g3y_A 77 ERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRA---SFEKASELRIQLRRARQTEDIP-IILVG 152 (211)
T ss_dssp EEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHH---HHHHHHHHHHHHHTSGGGTTSC-EEEEE
T ss_pred EEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhCCCCCc-EEEEE
Confidence 334455554 578999999877 4445566778899999999997632 222111222111111 113678 89999
Q ss_pred eCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 98 NKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 98 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
||+|+...... ..++ ...+.... +++++++||++|+|++++.
T Consensus 153 NK~DL~~~r~v--~~~e----~~~~a~~~------~~~~~e~SAk~g~~v~elf 194 (211)
T 2g3y_A 153 NKSDLVRCREV--SVSE----GRACAVVF------DCKFIETSAAVQHNVKELF 194 (211)
T ss_dssp ECTTCGGGCCS--CHHH----HHHHHHHH------TCEEEECBTTTTBSHHHHH
T ss_pred EChHHhcCceE--eHHH----HHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 99998531111 0111 11222222 3689999999999998763
No 157
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.49 E-value=1.3e-14 Score=109.18 Aligned_cols=128 Identities=15% Similarity=0.124 Sum_probs=74.8
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcChHH---HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH--Hc
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSFVP---NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK--TA 88 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~---~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~--~~ 88 (156)
.+.|++.....+. ...++.+|||||+++|.. .+..++++++++|+|+|+++. +... ...+.+.+..+. ..
T Consensus 31 ~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~---~~~l~~~l~~~~~~~~ 105 (331)
T 3r7w_B 31 LESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINA---ITNLAMIIEYAYKVNP 105 (331)
T ss_dssp CCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHH---HHHHHHHHHHHHHHCT
T ss_pred ecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHH---HHHHHHHHHHHhhcCC
Confidence 4556665555542 347899999999999964 468899999999999999875 2100 112222222222 23
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
++| +++++||+|+............+..+...-+.+.++. ..+++|++|||++ .||.+
T Consensus 106 ~ip-illvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~-~~~i~f~eTSAkd-~nV~e 163 (331)
T 3r7w_B 106 SIN-IEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLD-GVQVSFYLTSIFD-HSIYE 163 (331)
T ss_dssp TCE-EEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCS-CCCEEEECCCSSS-SHHHH
T ss_pred CCc-EEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhccc-ccCceEEEeccCC-CcHHH
Confidence 677 8999999998642211111112222111111111110 0257999999997 46654
No 158
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.48 E-value=3.2e-13 Score=99.49 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=66.1
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcC-------hHHHH-------Hhhhhc-------------CCEEEEEEeC
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKS-------FVPNM-------IGGTAQ-------------ADLAVLVISA 63 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~-------~~~~~-------~~~~~~-------------~d~~ilvvD~ 63 (156)
.++++++.....+..++ ..+.+|||||+.+ +.... ..++.. +|++++++++
T Consensus 46 ~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~ 125 (274)
T 3t5d_A 46 KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 125 (274)
T ss_dssp ---CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECS
T ss_pred CCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecC
Confidence 55666666666666555 4899999999842 22222 333333 6799999977
Q ss_pred CC-CccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecc
Q psy10355 64 RK-GEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGE 142 (156)
Q Consensus 64 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 142 (156)
+. +. .......+..+.. ++| +|+|+||+|+.. .......++.+...+... +++++++||+
T Consensus 126 ~~~~~-------~~~d~~~l~~l~~-~~p-vi~V~nK~D~~~----~~e~~~~~~~i~~~l~~~------~i~v~~~sa~ 186 (274)
T 3t5d_A 126 SGHGL-------KPLDIEFMKRLHE-KVN-IIPLIAKADTLT----PEECQQFKKQIMKEIQEH------KIKIYEFPET 186 (274)
T ss_dssp CCSSC-------CHHHHHHHHHHTT-TSC-EEEEESSGGGSC----HHHHHHHHHHHHHHHHHT------TCCCCCC---
T ss_pred CCCCC-------CHHHHHHHHHHhc-cCC-EEEEEeccCCCC----HHHHHHHHHHHHHHHHHc------CCeEEcCCCC
Confidence 65 33 2444555555554 788 899999999763 233444455555555544 4578999999
Q ss_pred cCCCCccCC
Q psy10355 143 LEKNPLLLG 151 (156)
Q Consensus 143 ~g~gi~~l~ 151 (156)
+|+|++++.
T Consensus 187 ~~~~~~~l~ 195 (274)
T 3t5d_A 187 DDEEENKLV 195 (274)
T ss_dssp --------C
T ss_pred CChhHHHHH
Confidence 999998764
No 159
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.47 E-value=1.7e-14 Score=109.99 Aligned_cols=136 Identities=15% Similarity=0.150 Sum_probs=84.9
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCcc---cc-ccCCCcchHHHHHHHHH--
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF---ET-GFDRGGQTREHAMLAKT-- 87 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~---~~-~~~~~~~~~~~~~~~~~-- 87 (156)
+..|++.....+..++..+.+|||+|++++...|..++++++++|+|+|.++... +. ...........+..+..
T Consensus 177 ~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~ 256 (353)
T 1cip_A 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256 (353)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred cCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc
Confidence 4556777777888899999999999999999999999999999999999976310 00 00000112222222222
Q ss_pred --cCCCcEEEEEeCCCCCCcch-------------hHHHHHHHHHHHHHHHHHcCCC-CCCCCeEEEeecccCCCCccC
Q psy10355 88 --AGVKHLVVLINKMDDPTVMW-------------SEARYNECKDKILPYLKKLGFN-AAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 88 --~~~~~~ivv~NK~Dl~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.+.| +|+++||+|+..... .....++..+.+...+..+... ....+.+++|||++|+||..+
T Consensus 257 ~~~~~p-iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~v 334 (353)
T 1cip_A 257 WFTDTS-IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFV 334 (353)
T ss_dssp GGTTSE-EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHH
T ss_pred cccCCc-EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHH
Confidence 3567 999999999741100 0011233333333222233211 113578999999999998753
No 160
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.46 E-value=5.7e-14 Score=99.56 Aligned_cols=109 Identities=11% Similarity=0.147 Sum_probs=62.7
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhc----CCEEEEEEeCC-CCccccccCCCcchHHHHHHHH----HcCCCcEEEEEe
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQ----ADLAVLVISAR-KGEFETGFDRGGQTREHAMLAK----TAGVKHLVVLIN 98 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~----~d~~ilvvD~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ivv~N 98 (156)
....+.+|||||++++...+..+++. +|++++|+|++ ... +|.....+...+.... ..+.| +++|+|
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~n 128 (218)
T 1nrj_B 53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPK---KLTTTAEFLVDILSITESSCENGID-ILIACN 128 (218)
T ss_dssp GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTT---CCHHHHHHHHHHHHHHHHHSTTCCC-EEEEEE
T ss_pred eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChH---HHHHHHHHHHHHHhcccccccCCCC-EEEEEE
Confidence 55789999999999998888888877 89999999998 321 1111111211111111 14677 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKN 146 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~g 146 (156)
|+|+..........+.+.+++..+.... ..+++++||++|.+
T Consensus 129 K~Dl~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 129 KSELFTARPPSKIKDALESEIQKVIERR------KKSLNEVERKINEE 170 (218)
T ss_dssp CTTSTTCCCHHHHHHHHHHHHHHHHHHH------HHHHHC--------
T ss_pred chHhcccCCHHHHHHHHHHHHHHHHHHH------hccccccccccccc
Confidence 9998754332323333344444443332 24678899998875
No 161
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.46 E-value=1.7e-14 Score=101.95 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=70.3
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC-cchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG-GQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.+|||||+++|...+..+++.+|++|+|+|+++.. +|... ..+...+... ..+.| +++|+||+|+.....
T Consensus 75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~---s~~~~~~~~~~~i~~~-~~~~p-iilv~nK~Dl~~~~~ 149 (205)
T 1gwn_A 75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE---TLDSVLKKWKGEIQEF-CPNTK-MLLVGCKSDLRTDVS 149 (205)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HHHHHHHTHHHHHHHH-CTTCE-EEEEEECGGGGGCHH
T ss_pred EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHH---HHHHHHHHHHHHHHHH-CCCCC-EEEEEechhhccchh
Confidence 367999999999999888888999999999999998742 11111 1122222111 13567 899999999853210
Q ss_pred hHHHHHHH---------HHHHHHHHHHcCCCCCCCCeEEEeecc-cCCCCccCC
Q psy10355 108 SEARYNEC---------KDKILPYLKKLGFNAAKDLSFMPCSGE-LEKNPLLLG 151 (156)
Q Consensus 108 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~~Sa~-~g~gi~~l~ 151 (156)
...++ .++...+.+..+ ..+++++||+ +|.|++++.
T Consensus 150 ---~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~SAk~~~~gv~~lf 195 (205)
T 1gwn_A 150 ---TLVELSNHRQTPVSYDQGANMAKQIG-----AATYIECSALQSENSVRDIF 195 (205)
T ss_dssp ---HHHHHHTTTCCCCCHHHHHHHHHHHT-----CSEEEECCTTTCHHHHHHHH
T ss_pred ---hhhhhcccccCCCCHHHHHHHHHHcC-----CCEEEEeeeccCCcCHHHHH
Confidence 00100 122333444443 2589999999 688988753
No 162
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.45 E-value=9.7e-14 Score=109.19 Aligned_cols=113 Identities=17% Similarity=0.115 Sum_probs=71.9
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHH--------HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVP--------NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~--------~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.+|+|.+.....+..++..+.+|||||++++.. .+..+++.+|++++|+|++.+. .....+.+..
T Consensus 255 ~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~-------~~~~~~i~~~ 327 (462)
T 3geh_A 255 LPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGW-------TTGDQEIYEQ 327 (462)
T ss_dssp CTTCCHHHHHHEEEETTEEEEECC--------------------CCCCSCSEEEEEEETTTCS-------CHHHHHHHHH
T ss_pred CCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCC-------CHHHHHHHHh
Confidence 368888888888999999999999999876532 2445678999999999998865 1233333333
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+ .+.| +++|+||+|+....... .+ + .+. ...+++++||++|+|+++|.
T Consensus 328 l--~~~p-iivV~NK~Dl~~~~~~~--------~~----~--~~~--~~~~~i~iSAktg~Gi~eL~ 375 (462)
T 3geh_A 328 V--KHRP-LILVMNKIDLVEKQLIT--------SL----E--YPE--NITQIVHTAAAQKQGIDSLE 375 (462)
T ss_dssp H--TTSC-EEEEEECTTSSCGGGST--------TC----C--CCT--TCCCEEEEBTTTTBSHHHHH
T ss_pred c--cCCc-EEEEEECCCCCcchhhH--------HH----H--Hhc--cCCcEEEEECCCCCCHHHHH
Confidence 3 2357 89999999986431110 00 0 010 24689999999999998764
No 163
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.44 E-value=6.4e-14 Score=102.20 Aligned_cols=121 Identities=13% Similarity=0.050 Sum_probs=76.5
Q ss_pred ceeeeeeEEEEeCCeEEEEEeCCCCcCh-----------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 16 KTVEVGRAYFETDRKHFTILDAPGHKSF-----------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 16 ~t~~~~~~~~~~~~~~~~iiDtpG~~~~-----------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+|.......+.+++..+.||||||+.++ ...+..+++.+|++++|+|++. . .......+..
T Consensus 57 ~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~-------~~~~~~~~~~ 128 (260)
T 2xtp_A 57 LTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-Y-------TSQDQQAAQR 128 (260)
T ss_dssp CCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-C-------CHHHHHHHHH
T ss_pred eeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-C-------CHHHHHHHHH
Confidence 7888888888899999999999998664 2334457789999999999975 2 2344444444
Q ss_pred HHHc-----CCCcEEEEEe-CCCCCCcchhHHHHHHHH----HHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 85 AKTA-----GVKHLVVLIN-KMDDPTVMWSEARYNECK----DKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 85 ~~~~-----~~~~~ivv~N-K~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+... +.| .++++| |+|+...... ..+. +.+...++..+... ..+..+++||++|.|+++|
T Consensus 129 l~~~~~~~~~~~-~i~vv~nK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~~~gv~~l 198 (260)
T 2xtp_A 129 VKEIFGEDAMGH-TIVLFTHKEDLNGGSLM----DYMHDSDNKALSKLVAACGGRI-CAFNNRAEGSNQDDQVKEL 198 (260)
T ss_dssp HHHHHCGGGGGG-EEEEEECGGGGTTCCHH----HHHHHCCCHHHHHHHHHTTTCE-EECCTTCCHHHHHHHHHHH
T ss_pred HHHHhCchhhcc-EEEEEEcccccCCccHH----HHHHhcchHHHHHHHHHhCCeE-EEecCcccccccHHHHHHH
Confidence 4443 456 566666 9998643211 1111 12333344433110 0011189999999998765
No 164
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.44 E-value=6.6e-14 Score=107.01 Aligned_cols=135 Identities=11% Similarity=0.088 Sum_probs=76.7
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCC-----CcchHHHHHHHHH-
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR-----GGQTREHAMLAKT- 87 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~-----~~~~~~~~~~~~~- 87 (156)
+..|++.....+..++..+.+|||||++++...|..++++++++|||+|.++.. +..++. .......+..+..
T Consensus 185 r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d-q~l~ed~~~n~~~es~~~~~~i~~~ 263 (362)
T 1zcb_A 185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFD-QVLMEDRQTNRLTESLNIFETIVNN 263 (362)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTT-CEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred cCCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECcccc-ccccccccccHHHHHHHHHHHHhcc
Confidence 445666677788889999999999999999999999999999999999998731 000000 0111222222222
Q ss_pred ---cCCCcEEEEEeCCCCCCcc--------------hhHHHHHHHHHHHHHHHHHcCCCC-CCCCeEEEeecccCCCCcc
Q psy10355 88 ---AGVKHLVVLINKMDDPTVM--------------WSEARYNECKDKILPYLKKLGFNA-AKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 88 ---~~~~~~ivv~NK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~Sa~~g~gi~~ 149 (156)
.+.| +|+++||+|+.... ......++..+.+...+..+.-.+ ...+.+++|||++|+||..
T Consensus 264 ~~~~~~p-iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~ 342 (362)
T 1zcb_A 264 RVFSNVS-IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRL 342 (362)
T ss_dssp GGGTTSE-EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred hhhCCCC-EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHH
Confidence 3567 99999999974110 000112333333322222221111 1357889999999999875
Q ss_pred C
Q psy10355 150 L 150 (156)
Q Consensus 150 l 150 (156)
+
T Consensus 343 v 343 (362)
T 1zcb_A 343 V 343 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 165
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.43 E-value=9.8e-14 Score=104.62 Aligned_cols=135 Identities=13% Similarity=0.083 Sum_probs=85.6
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCcc----ccccCCCcchHHHHHHHHH--
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF----ETGFDRGGQTREHAMLAKT-- 87 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~----~~~~~~~~~~~~~~~~~~~-- 87 (156)
+.-|++.....+..++..+.+|||+|++++...|..++++++++|+|+|.++... ..+......+...+..+..
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 4566777888888999999999999999999999999999999999998762110 0000000112222332222
Q ss_pred --cCCCcEEEEEeCCCCCCcch--------------hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 88 --AGVKHLVVLINKMDDPTVMW--------------SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 88 --~~~~~~ivv~NK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
.++| +++++||+|+..... .....++..+.+...+..........+.+..|||++++||..
T Consensus 231 ~~~~~~-iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~ 307 (327)
T 3ohm_A 231 WFQNSS-VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRF 307 (327)
T ss_dssp GGTTCE-EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHH
T ss_pred ccCCce-EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHH
Confidence 3567 899999999742110 011233334444443333332222356788999999998764
No 166
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.43 E-value=3.6e-14 Score=98.30 Aligned_cols=114 Identities=15% Similarity=0.100 Sum_probs=66.9
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
....+.+|||||+++|...+..++++++++++|+|.+++. .+|.....+...+.. ...+.| +++|+||+|+...
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~--~s~~~~~~~~~~~~~-~~~~~p-iilv~nK~Dl~~~-- 127 (184)
T 2zej_A 54 RDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQ--AEVDAMKPWLFNIKA-RASSSP-VILVGTHLDVSDE-- 127 (184)
T ss_dssp --CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCH--HHHHTHHHHHHHHHH-HCTTCE-EEEEEECGGGCCH--
T ss_pred CceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcch--hHHHHHHHHHHHHHh-hCCCCc-EEEEEECCCcccc--
Confidence 4568999999999998888888889999999999997752 111111112111111 113567 8999999997531
Q ss_pred hHHHHHH-HHHHHHHHHHHcCCCCCCCCeEEEeecccCC-CCccCC
Q psy10355 108 SEARYNE-CKDKILPYLKKLGFNAAKDLSFMPCSGELEK-NPLLLG 151 (156)
Q Consensus 108 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~-gi~~l~ 151 (156)
..... ..+....+.+..++.. ..+++++||++|. |++.|.
T Consensus 128 --~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~~~~~l~ 169 (184)
T 2zej_A 128 --KQRKACMSKITKELLNKRGFPA--IRDYHFVNATEESDALAKLR 169 (184)
T ss_dssp --HHHHHHHHHHHHHTTTCTTSCE--EEEEEECCTTSCCHHHHHHH
T ss_pred --hhhHHHHHHHHHHHHHhcCCcc--hhheEEEecccCchhHHHHH
Confidence 11111 1111222222222210 0138999999996 877653
No 167
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.42 E-value=4.4e-13 Score=92.63 Aligned_cols=128 Identities=19% Similarity=0.253 Sum_probs=72.8
Q ss_pred HHhhcCceeeeeeEEEEeCCeEEEEEeCCC-----------CcChHHHHHhhhhc----CCEEEEEEeCCCCccc-ccc-
Q psy10355 10 QKREKGKTVEVGRAYFETDRKHFTILDAPG-----------HKSFVPNMIGGTAQ----ADLAVLVISARKGEFE-TGF- 72 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG-----------~~~~~~~~~~~~~~----~d~~ilvvD~~~~~~~-~~~- 72 (156)
.+..+|+|.......+. .+.+||||| ++++...+..+++. ++++++|+|+.....- ..+
T Consensus 28 ~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~ 103 (190)
T 2cxx_A 28 RGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWE 103 (190)
T ss_dssp SSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHH
T ss_pred cCCCCCccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhh
Confidence 34456777666554443 799999999 44555555555554 5577777776432100 000
Q ss_pred --CCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCC-CCCeEEEeecccCCCCcc
Q psy10355 73 --DRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA-KDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 73 --~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~Sa~~g~gi~~ 149 (156)
.......+....+...+.| +++|+||+|+.... .+....+.+..++.-. ...+++++||++|+|+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 173 (190)
T 2cxx_A 104 KRGEIPIDVEFYQFLRELDIP-TIVAVNKLDKIKNV---------QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIER 173 (190)
T ss_dssp HTTCCCHHHHHHHHHHHTTCC-EEEEEECGGGCSCH---------HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHH
T ss_pred ccCccHHHHHHHHHHHhcCCc-eEEEeehHhccCcH---------HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHH
Confidence 0001122333444556788 89999999986421 1223333444443100 013689999999999987
Q ss_pred CC
Q psy10355 150 LG 151 (156)
Q Consensus 150 l~ 151 (156)
+.
T Consensus 174 l~ 175 (190)
T 2cxx_A 174 LK 175 (190)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 168
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.42 E-value=2.1e-12 Score=98.47 Aligned_cols=119 Identities=16% Similarity=0.169 Sum_probs=75.3
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcChH---------HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSFV---------PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~---------~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
++.|.+.....+..++..+.+|||||+.++. .........+|++++|+|++... +++. ......+..
T Consensus 198 ~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~---~~~~-~~~~~~~~~ 273 (357)
T 2e87_A 198 PFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHC---GFPL-EEQIHLFEE 273 (357)
T ss_dssp TTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTT---SSCH-HHHHHHHHH
T ss_pred CCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccc---cCCH-HHHHHHHHH
Confidence 4667777777777788999999999985431 12223445699999999987632 0000 111122222
Q ss_pred HHH-c-CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKT-A-GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~-~-~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+.. . +.| +++|+||+|+... ....+ ....++.. +.+++++||++|+|+++|.
T Consensus 274 i~~~~~~~p-iilV~NK~Dl~~~----~~~~~----~~~~~~~~------~~~~~~iSA~~g~gi~~l~ 327 (357)
T 2e87_A 274 VHGEFKDLP-FLVVINKIDVADE----ENIKR----LEKFVKEK------GLNPIKISALKGTGIDLVK 327 (357)
T ss_dssp HHHHTTTSC-EEEEECCTTTCCH----HHHHH----HHHHHHHT------TCCCEECBTTTTBTHHHHH
T ss_pred HHHhcCCCC-EEEEEECcccCCh----HHHHH----HHHHHHhc------CCCeEEEeCCCCcCHHHHH
Confidence 222 2 678 8999999998632 11222 22233332 4688999999999998764
No 169
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.41 E-value=2.2e-13 Score=95.13 Aligned_cols=118 Identities=17% Similarity=0.088 Sum_probs=68.2
Q ss_pred eeeeeEEEEeCCe--EEEEEeCCCCcC-hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcE
Q psy10355 18 VEVGRAYFETDRK--HFTILDAPGHKS-FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHL 93 (156)
Q Consensus 18 ~~~~~~~~~~~~~--~~~iiDtpG~~~-~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 93 (156)
.+.....+..++. .+.+|||+|... +......+++.+|++++|+|.++.. +|.....+...+.... ..+.| +
T Consensus 42 ~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~---s~~~~~~~~~~l~~~~~~~~~p-i 117 (192)
T 2cjw_A 42 EDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRA---SFEKASELRIQLRRARQTEDIP-I 117 (192)
T ss_dssp TTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHTTTSCCC-E
T ss_pred eeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhhCCCCCe-E
Confidence 3333344555554 578999999865 3334456778899999999998732 2221122222222221 23677 8
Q ss_pred EEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 94 VVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 94 ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++|+||+|+...... ...+ ...+.... +++++++||++|+|++++.
T Consensus 118 ilV~NK~Dl~~~r~v--~~~~----~~~~a~~~------~~~~~e~SA~~g~~v~~lf 163 (192)
T 2cjw_A 118 ILVGNKSDLVRXREV--SVSE----GRAXAVVF------DXKFIETSAAVQHNVKELF 163 (192)
T ss_dssp EEEEECTTCGGGCCS--CHHH----HHHHHHHT------TCEEEECBTTTTBSHHHHH
T ss_pred EEEEechhhhccccc--cHHH----HHHHHHHh------CCceEEeccccCCCHHHHH
Confidence 999999997531110 1111 11122222 4589999999999998753
No 170
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.40 E-value=3e-13 Score=102.72 Aligned_cols=120 Identities=19% Similarity=0.156 Sum_probs=75.8
Q ss_pred cCceeeeeeEEEEeCC-eEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 14 KGKTVEVGRAYFETDR-KHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~-~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
+++|.......+.+++ ..+.+|||||+.+ +.......+..+|++|+|+|++....... ..........+
T Consensus 189 ~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~---~~~~~~~~~eL 265 (342)
T 1lnz_A 189 HFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDP---YDDYLTINQEL 265 (342)
T ss_dssp TSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCH---HHHHHHHHHHH
T ss_pred CccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccCh---HHHHHHHHHHH
Confidence 4677888888888876 8899999999632 23344455567999999999975210000 01222223333
Q ss_pred HH-----cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 86 KT-----AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 86 ~~-----~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.. .+.| +++|+||+|+... .. .+..+.+.++. ..+++++||++++|+++|.
T Consensus 266 ~~~~~~l~~~p-~ilV~NK~Dl~~~---~e-------~~~~l~~~l~~----~~~v~~iSA~tg~gi~eL~ 321 (342)
T 1lnz_A 266 SEYNLRLTERP-QIIVANKMDMPEA---AE-------NLEAFKEKLTD----DYPVFPISAVTREGLRELL 321 (342)
T ss_dssp HHSCSSTTTSC-BCBEEECTTSTTH---HH-------HHHHHHHHCCS----CCCBCCCSSCCSSTTHHHH
T ss_pred HHhhhhhcCCC-EEEEEECccCCCC---HH-------HHHHHHHHhhc----CCCEEEEECCCCcCHHHHH
Confidence 33 3577 7999999998631 11 12222233321 2578999999999998764
No 171
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.37 E-value=7.4e-13 Score=105.91 Aligned_cols=101 Identities=14% Similarity=0.118 Sum_probs=66.8
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc--CCCcEEEEEeCCCCCCcc
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA--GVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivv~NK~Dl~~~~ 106 (156)
+..+.+|||||++.+......+++.+|++|+|+|++... .....+..+... +.| +++|+||+|+....
T Consensus 97 ~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~~---------~~~~~~~~l~~~~~~~p-vilV~NK~Dl~~~~ 166 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDS---------NKHYWLRHIEKYGGKSP-VIVVMNKIDENPSY 166 (535)
T ss_dssp TCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGGG---------GHHHHHHHHHHHSSSCC-EEEEECCTTTCTTC
T ss_pred eEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCch---------hHHHHHHHHHHhCCCCC-EEEEEECCCccccc
Confidence 578999999999999888888899999999999997532 223333334433 478 89999999986432
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
... .+ .+...+... +.+++++||++|.|+++|.
T Consensus 167 ~v~--~~----~~~~~~~~~------~~~~~~vSA~~g~gi~eL~ 199 (535)
T 3dpu_A 167 NIE--QK----KINERFPAI------ENRFHRISCKNGDGVESIA 199 (535)
T ss_dssp CCC--HH----HHHHHCGGG------TTCEEECCC-----CTTHH
T ss_pred ccC--HH----HHHHHHHhc------CCceEEEecCcccCHHHHH
Confidence 111 11 233333333 3579999999999999864
No 172
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.36 E-value=1.1e-12 Score=95.36 Aligned_cols=83 Identities=13% Similarity=0.057 Sum_probs=59.2
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCC--------cChHHHHHhhh----hcCCEEEEEEeCCCCccccccCCCcchHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGH--------KSFVPNMIGGT----AQADLAVLVISARKGEFETGFDRGGQTRE 80 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~--------~~~~~~~~~~~----~~~d~~ilvvD~~~~~~~~~~~~~~~~~~ 80 (156)
..|+|.......+.+++..+.+|||||+ +++...+..++ +.+|++|+|+|++. . ......
T Consensus 53 ~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~-------~~~~~~ 124 (247)
T 3lxw_A 53 ATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-F-------TAQDQQ 124 (247)
T ss_dssp ----CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-C-------CHHHHH
T ss_pred CCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-C-------CHHHHH
Confidence 3468888888899999999999999998 45555555555 89999999999964 2 233444
Q ss_pred HHHHHHHc------CCCcEEEEEeCCCCCC
Q psy10355 81 HAMLAKTA------GVKHLVVLINKMDDPT 104 (156)
Q Consensus 81 ~~~~~~~~------~~~~~ivv~NK~Dl~~ 104 (156)
.+..+... +.| +|++.||+|+..
T Consensus 125 ~~~~l~~~~~~~~~~~~-iilv~nK~Dl~~ 153 (247)
T 3lxw_A 125 AVRQVRDMFGEDVLKWM-VIVFTRKEDLAG 153 (247)
T ss_dssp HHHHHHHHHCGGGGGGE-EEEEECGGGGTT
T ss_pred HHHHHHHHhChhhhccE-EEEEEchHhcCC
Confidence 44444432 567 899999999864
No 173
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.35 E-value=1.3e-12 Score=100.88 Aligned_cols=88 Identities=13% Similarity=0.138 Sum_probs=62.1
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCC--Cc---chHHHHHHHHH-
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR--GG---QTREHAMLAKT- 87 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~--~~---~~~~~~~~~~~- 87 (156)
+..|++.....+..++..+.+|||+|++++...|..++++++++|+|+|.++.. +..++. .. .....+..+..
T Consensus 201 r~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~yd-q~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 201 RVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYN-MVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGG-CBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred ccceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccc-cccccccccchHHHHHHHHHHHHhc
Confidence 444666667778888999999999999999999999999999999999998621 000000 01 11222222222
Q ss_pred ---cCCCcEEEEEeCCCCC
Q psy10355 88 ---AGVKHLVVLINKMDDP 103 (156)
Q Consensus 88 ---~~~~~~ivv~NK~Dl~ 103 (156)
.++| +++++||+|+.
T Consensus 280 ~~~~~~p-iiLvgNK~DL~ 297 (402)
T 1azs_C 280 RWLRTIS-VILFLNKQDLL 297 (402)
T ss_dssp TTCSSCC-EEEEEECHHHH
T ss_pred ccCCCCe-EEEEEEChhhh
Confidence 3567 99999999973
No 174
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.35 E-value=9.5e-13 Score=98.32 Aligned_cols=102 Identities=18% Similarity=0.056 Sum_probs=69.3
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhH
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSE 109 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~ 109 (156)
..+.+||| +++|...+..+++++|++|+|+|+++... ++ ......+..+...++| +++|+||+|+.. .
T Consensus 63 ~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~--s~---~~l~~~l~~~~~~~~p-iilv~NK~DL~~----~ 130 (301)
T 1u0l_A 63 GSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPET--ST---YIIDKFLVLAEKNELE-TVMVINKMDLYD----E 130 (301)
T ss_dssp SSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCC--CH---HHHHHHHHHHHHTTCE-EEEEECCGGGCC----H
T ss_pred CeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCC--CH---HHHHHHHHHHHHCCCC-EEEEEeHHHcCC----c
Confidence 37999999 89998888999999999999999987431 11 1111222333445778 899999999863 1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 110 ARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+ +...+.+..+. . ++++++||++|+|++++.
T Consensus 131 ~~v~----~~~~~~~~~~~---~-~~~~~~SAktg~gv~~lf 164 (301)
T 1u0l_A 131 DDLR----KVRELEEIYSG---L-YPIVKTSAKTGMGIEELK 164 (301)
T ss_dssp HHHH----HHHHHHHHHTT---T-SCEEECCTTTCTTHHHHH
T ss_pred hhHH----HHHHHHHHHhh---h-CcEEEEECCCCcCHHHHH
Confidence 1111 22333333321 1 589999999999998764
No 175
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.34 E-value=4.9e-13 Score=101.21 Aligned_cols=89 Identities=21% Similarity=0.209 Sum_probs=63.5
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCc---cc-cccCCCcchHHHHHHHHH--
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE---FE-TGFDRGGQTREHAMLAKT-- 87 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~---~~-~~~~~~~~~~~~~~~~~~-- 87 (156)
+.-|++.....+..++..+.+|||+|++++...|..++++++++|+|+|.++.. .+ .+..........+..+..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 456777888888899999999999999999999999999999999999997311 00 000000112222222222
Q ss_pred --cCCCcEEEEEeCCCCC
Q psy10355 88 --AGVKHLVVLINKMDDP 103 (156)
Q Consensus 88 --~~~~~~ivv~NK~Dl~ 103 (156)
.++| +++++||+|+.
T Consensus 225 ~~~~~p-iiLv~NK~DL~ 241 (340)
T 4fid_A 225 FLKGAV-KLIFLNKMDLF 241 (340)
T ss_dssp GGTTSE-EEEEEECHHHH
T ss_pred ccCCCe-EEEEEECchhh
Confidence 3567 89999999974
No 176
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.33 E-value=4.3e-12 Score=97.11 Aligned_cols=129 Identities=18% Similarity=0.110 Sum_probs=75.5
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcCh--------HHHHHhhhhcCCEEEEEEeCCCCc--cccccCCCcchHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKSF--------VPNMIGGTAQADLAVLVISARKGE--FETGFDRGGQTRE 80 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~--------~~~~~~~~~~~d~~ilvvD~~~~~--~~~~~~~~~~~~~ 80 (156)
+...+.|.+.....+.+++..+.+|||||+.+. ...+...+..+|++++|+|++... .. .....+..
T Consensus 207 ~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~---~~~~~~~~ 283 (364)
T 2qtf_A 207 DTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLI---ETLQSSFE 283 (364)
T ss_dssp -------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHH---HHHHHHHH
T ss_pred cCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHH---HHHHHHHH
Confidence 345688888888999999999999999997321 233455688999999999997643 10 00000112
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 81 HAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 81 ~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+..+...+.| +++|.||+|+.... .... ...+..+....+. ...+++++||++|+|++.|.
T Consensus 284 ~L~~l~~~~~p-~ilV~NK~Dl~~~~-~~~~----~~~~~~l~~~l~~---~~~~~~~~SA~~g~gi~~L~ 345 (364)
T 2qtf_A 284 ILREIGVSGKP-ILVTLNKIDKINGD-LYKK----LDLVEKLSKELYS---PIFDVIPISALKRTNLELLR 345 (364)
T ss_dssp HHHHHTCCSCC-EEEEEECGGGCCSC-HHHH----HHHHHHHHHHHCS---CEEEEEECBTTTTBSHHHHH
T ss_pred HHHHhCcCCCC-EEEEEECCCCCCch-HHHH----HHHHHHHHHHhcC---CCCcEEEEECCCCcCHHHHH
Confidence 22222224567 89999999986422 1111 1112222232211 13478999999999998764
No 177
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.32 E-value=4.3e-12 Score=94.00 Aligned_cols=121 Identities=13% Similarity=0.039 Sum_probs=73.7
Q ss_pred cCceeeeeeEEEEeC-CeEEEEEeCCCCc-------------ChHHHHHhhhhcCCEEE-EEEeCCCCccccccCCCcch
Q psy10355 14 KGKTVEVGRAYFETD-RKHFTILDAPGHK-------------SFVPNMIGGTAQADLAV-LVISARKGEFETGFDRGGQT 78 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~-~~~~~iiDtpG~~-------------~~~~~~~~~~~~~d~~i-lvvD~~~~~~~~~~~~~~~~ 78 (156)
.|++.......+... ...+.||||||+. .+...+..+++.++.++ +|+|++.+.. .+.
T Consensus 108 ~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~-------~~~ 180 (299)
T 2aka_B 108 KGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSD 180 (299)
T ss_dssp TCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGG-------GCH
T ss_pred CCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchh-------hhH
Confidence 344444444444433 4789999999974 34566778888888776 6999987651 233
Q ss_pred -HHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 79 -REHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 79 -~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+..+...+.| +++|+||+|+...... ..+. +...+ ..+. ....+++++||++|.|+++|.
T Consensus 181 ~~~~~~~~~~~~~~-~i~V~NK~Dl~~~~~~--~~~~----~~~~~--~~~~-~~~~~v~~~SA~~~~gi~~l~ 244 (299)
T 2aka_B 181 ALKIAKEVDPQGQR-TIGVITKLDLMDEGTD--ARDV----LENKL--LPLR-RGYIGVVNRSQKDIDGKKDIT 244 (299)
T ss_dssp HHHHHHHHCTTCSS-EEEEEECGGGSCTTCC--CHHH----HTTCS--SCCT-TCEEECCCCCCBCTTSCBCHH
T ss_pred HHHHHHHhCCCCCe-EEEEEEccccCCCCch--HHHH----HhCCc--CcCC-CCcEEEECCChhhccccccHH
Confidence 2344555455778 8999999998642211 0111 11000 0110 011378999999999998764
No 178
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.32 E-value=7.5e-13 Score=100.91 Aligned_cols=88 Identities=16% Similarity=0.162 Sum_probs=58.0
Q ss_pred cCceeeeeeEEEEeC------CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCcccccc-----CCCcchHHHH
Q psy10355 14 KGKTVEVGRAYFETD------RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGF-----DRGGQTREHA 82 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~-----~~~~~~~~~~ 82 (156)
+..|.++....+..+ ...+.+|||+|++++...+..++++++++|+|+|.++.. +..+ ..-......+
T Consensus 161 r~~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~yd-q~l~e~~~~~s~~~~~~~~ 239 (354)
T 2xtz_A 161 RVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYD-QTLFEDEQKNRMMETKELF 239 (354)
T ss_dssp CCCCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTT-CBCSSCTTSBHHHHHHHHH
T ss_pred cccccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccc-cccccccchhHHHHHHHHH
Confidence 344666666666663 478999999999999999999999999999999987210 0000 0001122222
Q ss_pred HHHHH----cCCCcEEEEEeCCCCC
Q psy10355 83 MLAKT----AGVKHLVVLINKMDDP 103 (156)
Q Consensus 83 ~~~~~----~~~~~~ivv~NK~Dl~ 103 (156)
..+.. .++| +++++||+|+.
T Consensus 240 ~~i~~~~~~~~~p-iiLvgNK~DL~ 263 (354)
T 2xtz_A 240 DWVLKQPCFEKTS-FMLFLNKFDIF 263 (354)
T ss_dssp HHHHTCGGGSSCE-EEEEEECHHHH
T ss_pred HHHHhccccCCCe-EEEEEECcchh
Confidence 22222 3567 99999999973
No 179
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.28 E-value=8.3e-12 Score=87.33 Aligned_cols=123 Identities=18% Similarity=0.083 Sum_probs=76.2
Q ss_pred hcCceeeeeeEEEEeCCe--EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC
Q psy10355 13 EKGKTVEVGRAYFETDRK--HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (156)
.+.++.+.....+.+++. .+.+|||||++++...+..+++.++++++|+|..+.. ++.....+...+......+.
T Consensus 35 ~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~ 111 (199)
T 2f9l_A 35 KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHL---TYENVERWLKELRDHADSNI 111 (199)
T ss_dssp -CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHSCTTC
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCCCC
Confidence 344445555666777764 5788999999988877778888999999999997643 11111111111111111345
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
| +++++||+|+....... ..+ ...+.... ++.++.+||+++.|++++.
T Consensus 112 ~-i~~v~nK~Dl~~~~~~~--~~~----a~~l~~~~------~~~~~d~Sal~~~~i~~l~ 159 (199)
T 2f9l_A 112 V-IMLVGNKSDLRHLRAVP--TDE----ARAFAEKN------NLSFIETSALDSTNVEEAF 159 (199)
T ss_dssp E-EEEEEECTTCGGGCCSC--HHH----HHHHHHHT------TCEEEECCTTTCTTHHHHH
T ss_pred e-EEEEEECcccccccCcC--HHH----HHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 6 89999999985321111 111 22333333 4688999999999987653
No 180
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.28 E-value=1.2e-12 Score=95.39 Aligned_cols=84 Identities=19% Similarity=0.143 Sum_probs=50.0
Q ss_pred cCCEEEEEEeCCCCccccccCCCcchHHHHHHH-HHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCC
Q psy10355 53 QADLAVLVISARKGEFETGFDRGGQTREHAMLA-KTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA 131 (156)
Q Consensus 53 ~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (156)
++|++|+|+|+++.. ..+|.....+...+... ...++| +++|+||+|+.. .... ++...+.+..
T Consensus 162 ~ad~vilV~D~t~~~-~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~----~~~v----~~~~~~~~~~----- 226 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGM-NRNFDDQLKFVSNLYNQLAKTKKP-IVVVLTKCDEGV----ERYI----RDAHTFALSK----- 226 (255)
T ss_dssp ECCEEEEEEECBC-----CHHHHHHHHHHHHHHHHHTTCC-EEEEEECGGGBC----HHHH----HHHHHHHHTS-----
T ss_pred cCCEEEEEEECCCCc-hhhHHHHHHHHHHHHHHhccCCCC-EEEEEEcccccc----cHHH----HHHHHHHHhc-----
Confidence 799999999998741 01222112232222222 235678 899999999752 1112 2233333322
Q ss_pred CCCeEEEeecccCCCCccCC
Q psy10355 132 KDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 132 ~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+++++++||++|.|++++.
T Consensus 227 ~~~~~~e~SAk~g~gv~elf 246 (255)
T 3c5h_A 227 KNLQVVETSARSNVNVDLAF 246 (255)
T ss_dssp SSCCEEECBTTTTBSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 14689999999999998753
No 181
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.27 E-value=2.7e-11 Score=87.27 Aligned_cols=115 Identities=11% Similarity=0.146 Sum_probs=66.0
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcC-----------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKS-----------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~-----------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
..++|.......+.+++..+.+|||||+.+ +...+..+++++|++|+|+|++... ......
T Consensus 61 ~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~--------~~~~~~ 132 (239)
T 3lxx_A 61 AKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT--------EEEHKA 132 (239)
T ss_dssp ----CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS--------SHHHHH
T ss_pred CCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC--------HHHHHH
Confidence 347888888888999999999999999643 4445566667889999999986532 222222
Q ss_pred HHHHH-----HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecc
Q psy10355 82 AMLAK-----TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGE 142 (156)
Q Consensus 82 ~~~~~-----~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 142 (156)
+..+. ....| +++|+||+|+.........+....+.+..+++..+ ..++++++.
T Consensus 133 l~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~------~~~~~~~~~ 191 (239)
T 3lxx_A 133 TEKILKMFGERARSF-MILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG------DRYCALNNK 191 (239)
T ss_dssp HHHHHHHHHHHHGGG-EEEEEECGGGC------------CHHHHHHHHHHS------SSEEECCTT
T ss_pred HHHHHHHhhhhccce-EEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC------CEEEEEECC
Confidence 22221 12346 89999999976432111111111223555555543 345666554
No 182
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.19 E-value=1.8e-11 Score=93.34 Aligned_cols=106 Identities=13% Similarity=0.068 Sum_probs=66.3
Q ss_pred eCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcc
Q psy10355 27 TDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 27 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
..+..+.||||||... .....+..+|++++|+|+..+.. .+... . ...+.| .++|+||+|+..
T Consensus 169 ~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~-------~~~l~--~--~~~~~p-~ivVlNK~Dl~~-- 231 (355)
T 3p32_A 169 AAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQ-------LQGIK--K--GVLELA-DIVVVNKADGEH-- 231 (355)
T ss_dssp HTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCT-------TTTCC--T--TSGGGC-SEEEEECCCGGG--
T ss_pred hCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCcc-------HHHHH--H--hHhhcC-CEEEEECCCCcC--
Confidence 3678999999999654 23344588999999999876431 00000 0 012347 699999999752
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCC-CCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFNA-AKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
........+++...+...+... ....+++++||++|+|+++|.
T Consensus 232 --~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~ 275 (355)
T 3p32_A 232 --HKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELW 275 (355)
T ss_dssp --HHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHH
T ss_pred --hhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHH
Confidence 2223333444544444332111 014689999999999998764
No 183
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.16 E-value=5.4e-11 Score=88.79 Aligned_cols=83 Identities=12% Similarity=0.158 Sum_probs=57.2
Q ss_pred CceeeeeeEEEEe-CCeEEEEEeCCCCcC-------------hHHHHHhhhhcCCEEEEEEeC-CCCccccccCCCcchH
Q psy10355 15 GKTVEVGRAYFET-DRKHFTILDAPGHKS-------------FVPNMIGGTAQADLAVLVISA-RKGEFETGFDRGGQTR 79 (156)
Q Consensus 15 g~t~~~~~~~~~~-~~~~~~iiDtpG~~~-------------~~~~~~~~~~~~d~~ilvvD~-~~~~~~~~~~~~~~~~ 79 (156)
|++.+.....+.. .+.++.||||||+.+ +...+..+++.+|++++|+|+ +.+.. .....
T Consensus 115 ~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~------~~~~~ 188 (315)
T 1jwy_B 115 GISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA------NSDAL 188 (315)
T ss_dssp -CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST------TCSHH
T ss_pred CccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh------hhHHH
Confidence 4544444444433 457899999999864 556788889999999999997 44331 12233
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPT 104 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~ 104 (156)
..+..+...+.| +++|+||+|+..
T Consensus 189 ~i~~~~~~~~~~-~i~v~NK~Dl~~ 212 (315)
T 1jwy_B 189 QLAKEVDPEGKR-TIGVITKLDLMD 212 (315)
T ss_dssp HHHHHHCSSCSS-EEEEEECTTSSC
T ss_pred HHHHHhCCCCCc-EEEEEcCcccCC
Confidence 555555556788 899999999864
No 184
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.16 E-value=3e-11 Score=83.76 Aligned_cols=90 Identities=12% Similarity=0.137 Sum_probs=54.5
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhc----CCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCcEEEEEeC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQ----ADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKHLVVLINK 99 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~----~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivv~NK 99 (156)
.+..+.+|||||+.++...+..+++. +|++++|+|++... .++.....+...+..... .+.| +++|+||
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK 165 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDP--KKLTTTAEFLVDILSITESSCENGID-ILIACNK 165 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCH--HHHHHHHHHHHHHHHHHHHHSTTCCC-EEEEEEC
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCc--hhHHHHHHHHHHHHhhhhhccccCCC-EEEEEEc
Confidence 56789999999999887666666665 89999999997221 111101111111111111 3678 8999999
Q ss_pred CCCCCcchhHHHHHHHHHHHH
Q psy10355 100 MDDPTVMWSEARYNECKDKIL 120 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~~~~~~~~ 120 (156)
+|+..........+.+.+++.
T Consensus 166 ~Dl~~~~~~~~~~~~l~~~l~ 186 (193)
T 2ged_A 166 SELFTARPPSKIKDALESEIQ 186 (193)
T ss_dssp TTSTTCCCHHHHHHHHHHHHH
T ss_pred hHhcCCCCHHHHHHHHHHHHH
Confidence 998754433333344444443
No 185
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.15 E-value=5.5e-11 Score=91.92 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=24.5
Q ss_pred eEEEEEeCCCCcCh----H---HHHHhhhhcCCEEEEEEeCCCC
Q psy10355 30 KHFTILDAPGHKSF----V---PNMIGGTAQADLAVLVISARKG 66 (156)
Q Consensus 30 ~~~~iiDtpG~~~~----~---~~~~~~~~~~d~~ilvvD~~~~ 66 (156)
.++.||||||+.+. . .....+++.+|++++|+|++++
T Consensus 71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 57999999998642 1 2223557899999999999875
No 186
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.15 E-value=5.9e-11 Score=90.71 Aligned_cols=115 Identities=16% Similarity=0.158 Sum_probs=51.8
Q ss_pred cCceeeeeeEEEEeCCe--EEEEEeCCCC-------cChHHHHH-------hhhhcC-------------CEEEEEEeCC
Q psy10355 14 KGKTVEVGRAYFETDRK--HFTILDAPGH-------KSFVPNMI-------GGTAQA-------------DLAVLVISAR 64 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~--~~~iiDtpG~-------~~~~~~~~-------~~~~~~-------------d~~ilvvD~~ 64 (156)
+++++......+..++. .+++|||||+ +.+...+. .+++.+ +++++++++.
T Consensus 77 ~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~ 156 (361)
T 2qag_A 77 RTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF 156 (361)
T ss_dssp -CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS
T ss_pred CceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC
Confidence 44444444444444444 7999999999 44433332 444433 4577777763
Q ss_pred CCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccC
Q psy10355 65 KGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELE 144 (156)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g 144 (156)
...+ .......+..+ ..++| +|+|+||+|+.. .......++.+...++.. +++++++||++|
T Consensus 157 ~~~l------~~~d~~~~~~l-~~~~p-iIlV~NK~Dl~~----~~ev~~~k~~i~~~~~~~------~i~~~~~Sa~~~ 218 (361)
T 2qag_A 157 GHGL------KPLDVAFMKAI-HNKVN-IVPVIAKADTLT----LKERERLKKRILDEIEEH------NIKIYHLPDAES 218 (361)
T ss_dssp SSSC------CHHHHHHHHHT-CS-SC-EEEEEECCSSSC----HHHHHHHHHHHHHHTTCC-------CCSCCCC----
T ss_pred CCCc------chhHHHHHHHh-ccCCC-EEEEEECCCCCC----HHHHHHHHHHHHHHHHHC------CCCEEeCCCcCC
Confidence 3221 12222233332 24678 899999999863 222333334454444333 468899999999
Q ss_pred CC
Q psy10355 145 KN 146 (156)
Q Consensus 145 ~g 146 (156)
.|
T Consensus 219 ~~ 220 (361)
T 2qag_A 219 DE 220 (361)
T ss_dssp --
T ss_pred Cc
Confidence 87
No 187
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.15 E-value=7.3e-11 Score=82.15 Aligned_cols=121 Identities=18% Similarity=0.085 Sum_probs=75.3
Q ss_pred cCceeeeeeEEEEeCCeE--EEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCC
Q psy10355 14 KGKTVEVGRAYFETDRKH--FTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVK 91 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (156)
+.++.+.....+.+++.. +.+|||||++++...+..+++.++++++|+|..... +|.....+...+......+.|
T Consensus 60 ~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~ 136 (191)
T 1oix_A 60 STIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHL---TYENVERWLKELRDHADSNIV 136 (191)
T ss_dssp CCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHH---HHHTHHHHHHHHHHHSCTTCE
T ss_pred CccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCCCCc
Confidence 445555566677777754 567999999998888888889999999999987632 111001111111111112456
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+++++||+|+...... .... ...+.... ++.++.+||+++.|++++
T Consensus 137 -i~~v~nK~Dl~~~~~~--~~~~----a~~l~~~~------~~~~ld~Sald~~~v~~l 182 (191)
T 1oix_A 137 -IMLVGNKSDLRHLRAV--PTDE----ARAFAEKN------GLSFIETSALDSTNVEAA 182 (191)
T ss_dssp -EEEEEECGGGGGGCCS--CHHH----HHHHHHHT------TCEEEECCTTTCTTHHHH
T ss_pred -EEEEEECccccccccc--CHHH----HHHHHHHc------CCEEEEEeCCCCCCHHHH
Confidence 8999999997532111 1111 22233332 468899999999998765
No 188
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.14 E-value=8e-11 Score=96.81 Aligned_cols=67 Identities=21% Similarity=0.242 Sum_probs=49.3
Q ss_pred eEEEEEeCCCCcC---hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH-HHHHcCCCcEEEEEeCCCCCC
Q psy10355 30 KHFTILDAPGHKS---FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM-LAKTAGVKHLVVLINKMDDPT 104 (156)
Q Consensus 30 ~~~~iiDtpG~~~---~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ivv~NK~Dl~~ 104 (156)
..+.||||||+.+ ....+..+++.+|++|+|+|++.+. .......+. .+...+.| +++|+||+|+..
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~-------s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~ 244 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPC-------TLGERRYLENYIKGRGLT-VFFLVNAWDQVR 244 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTT-------CHHHHHHHHHHTTTSCCC-EEEEEECGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCcc-------chhHHHHHHHHHHhhCCC-EEEEEECccccc
Confidence 4699999999765 4566778889999999999998764 123333333 33335677 899999999753
No 189
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.13 E-value=4e-10 Score=79.05 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=68.6
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcC----------hHHHHHhhh---hcCCEEEEEEeCCCCccccccCCCcch
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKS----------FVPNMIGGT---AQADLAVLVISARKGEFETGFDRGGQT 78 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~----------~~~~~~~~~---~~~d~~ilvvD~~~~~~~~~~~~~~~~ 78 (156)
...|.+..... +.+++ .+.+|||||+.. +......++ +.++++++++|++.+. ....
T Consensus 57 ~~~G~~~~~~~--~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~-------~~~~ 126 (210)
T 1pui_A 57 KTPGRTQLINL--FEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL-------KDLD 126 (210)
T ss_dssp ------CCEEE--EEEET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC-------CHHH
T ss_pred CCCccceeeEE--EEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC-------chhH
Confidence 34566654433 33333 788999999843 222222333 5688999999997754 1222
Q ss_pred HHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 79 REHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 79 ~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
......+...++| ++++.||+|+.... + .+.....+...+...+ ..+.++|+||+++.|++++.
T Consensus 127 ~~~~~~~~~~~~~-~~~v~nK~D~~s~~--~--~~~~~~~~~~~~~~~~----~~~~~~~~Sal~~~~~~~l~ 190 (210)
T 1pui_A 127 QQMIEWAVDSNIA-VLVLLTKADKLASG--A--RKAQLNMVREAVLAFN----GDVQVETFSSLKKQGVDKLR 190 (210)
T ss_dssp HHHHHHHHHTTCC-EEEEEECGGGSCHH--H--HHHHHHHHHHHHGGGC----SCEEEEECBTTTTBSHHHHH
T ss_pred HHHHHHHHHcCCC-eEEEEecccCCCch--h--HHHHHHHHHHHHHhcC----CCCceEEEeecCCCCHHHHH
Confidence 3344555567888 78899999975321 1 1111122333333322 13578999999999987653
No 190
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.13 E-value=4.7e-11 Score=90.58 Aligned_cols=106 Identities=14% Similarity=0.059 Sum_probs=63.3
Q ss_pred eCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcc
Q psy10355 27 TDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 27 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
+.+..++||||||+.+.... ..+.+|++++|+|+..+.. + +.... ...+.| .++|+||+|+...
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~---~----~~l~~----~~~~~p-~ivv~NK~Dl~~~- 209 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDD---L----QGIKK----GLMEVA-DLIVINKDDGDNH- 209 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC-------------CCCCH----HHHHHC-SEEEECCCCTTCH-
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHH---H----HHHHH----hhhccc-CEEEEECCCCCCh-
Confidence 46789999999998775443 3588999999999975431 0 11100 112457 5889999998632
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCC-CCCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFN-AAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+....+++...+...+.. .....+++++||++|+|++.|.
T Consensus 210 ---~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~ 252 (341)
T 2p67_A 210 ---TNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIW 252 (341)
T ss_dssp ---HHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHH
T ss_pred ---HHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHH
Confidence 12222223344333333210 0013478999999999998763
No 191
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.13 E-value=1.5e-10 Score=88.35 Aligned_cols=119 Identities=9% Similarity=0.029 Sum_probs=74.6
Q ss_pred CceeeeeeEEEEe-CCeEEEEEeCCCCcCh-------------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHH
Q psy10355 15 GKTVEVGRAYFET-DRKHFTILDAPGHKSF-------------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTRE 80 (156)
Q Consensus 15 g~t~~~~~~~~~~-~~~~~~iiDtpG~~~~-------------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~ 80 (156)
|++.+.....+.. ....+.+|||||+.++ ...+..+++.+|++|+|+|+...... ...+..
T Consensus 120 ~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~-----~~~~~~ 194 (360)
T 3t34_A 120 AISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLA-----TSDAIK 194 (360)
T ss_dssp CCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGG-----GCHHHH
T ss_pred CcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcC-----CHHHHH
Confidence 3333333333333 3567999999999876 66788889999999999987542210 133444
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 81 HAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 81 ~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+..+...+.| +++|+||+|+....... .+ .++. +......+++++|+.++.+++.+.
T Consensus 195 l~~~~~~~~~~-~i~V~nK~Dl~~~~~~~--~~--------~~~~--~~~~~~~~~~~v~~~s~~~i~~~~ 252 (360)
T 3t34_A 195 ISREVDPSGDR-TFGVLTKIDLMDKGTDA--VE--------ILEG--RSFKLKYPWVGVVNRSQADINKNV 252 (360)
T ss_dssp HHHHSCTTCTT-EEEEEECGGGCCTTCCS--HH--------HHTT--SSSCCSSCCEEECCCCHHHHHTTC
T ss_pred HHHHhcccCCC-EEEEEeCCccCCCcccH--HH--------HHcC--ccccccCCeEEEEECChHHhccCC
Confidence 55555455778 89999999976422111 11 1111 111125688999999998877654
No 192
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.11 E-value=5.4e-10 Score=81.63 Aligned_cols=84 Identities=10% Similarity=0.018 Sum_probs=55.5
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhh---------hcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGT---------AQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~---------~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..++|.......+.+++..+.+|||||+.++......++ ..+|++++|+|.+...+ .......+.
T Consensus 67 ~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~------~~~~~~~~~ 140 (262)
T 3def_A 67 FQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAV------DELDKQVVI 140 (262)
T ss_dssp SCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCC------CHHHHHHHH
T ss_pred CCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCC------CHHHHHHHH
Confidence 467788888888899999999999999987633222222 27899999988865321 122223333
Q ss_pred HHHHc-C----CCcEEEEEeCCCCC
Q psy10355 84 LAKTA-G----VKHLVVLINKMDDP 103 (156)
Q Consensus 84 ~~~~~-~----~~~~ivv~NK~Dl~ 103 (156)
.+... + .| +++|+||+|+.
T Consensus 141 ~l~~~~~~~~~~~-~ivv~nK~Dl~ 164 (262)
T 3def_A 141 AITQTFGKEIWCK-TLLVLTHAQFS 164 (262)
T ss_dssp HHHHHHCGGGGGG-EEEEEECTTCC
T ss_pred HHHHHhchhhhcC-EEEEEeCcccC
Confidence 33321 2 25 89999999985
No 193
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.10 E-value=2.1e-10 Score=81.03 Aligned_cols=93 Identities=15% Similarity=0.052 Sum_probs=56.4
Q ss_pred CCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH----HHHH----cCCCcEEEEEeCC-CCCCcchhH
Q psy10355 39 GHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM----LAKT----AGVKHLVVLINKM-DDPTVMWSE 109 (156)
Q Consensus 39 G~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~ivv~NK~-Dl~~~~~~~ 109 (156)
|+.+++..|..|+.++|++|||||+++.. .+ ...+.+. .+.. .+.| ++|++||. |++.+...
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~---R~----eak~EL~eL~~mL~ee~~L~gap-LLVlANKqqDlp~Ams~- 181 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHK---RH----EWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRMPC- 181 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTC---CC----CHHHHHHHHHHHSCTTSSCSCSC-EEEEEEESSTTSCBCCH-
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHh---HH----HHHHHHHHHHHHhcchhhhCCCe-EEEEeCCCcCccCCCCH-
Confidence 88889999999999999999999998753 11 1333321 1111 4678 89999995 77654322
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 110 ARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
.++.+.+ ...... ..|.+.+|||++|+|+.+
T Consensus 182 ---~EI~e~L----~L~~l~--R~W~Iq~csA~TGeGL~E 212 (227)
T 3l82_B 182 ---FYLAHEL----HLNLLN--HPWLVQDTEAETLTGFLN 212 (227)
T ss_dssp ---HHHHHHT----TGGGGC--SCEEEEEEETTTCTTHHH
T ss_pred ---HHHHHHc----CCcCCC--CCEEEEEeECCCCcCHHH
Confidence 2222222 222221 468999999999999864
No 194
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.10 E-value=2.4e-10 Score=94.41 Aligned_cols=121 Identities=15% Similarity=0.067 Sum_probs=75.2
Q ss_pred cCceeeeeeEEEEeC-CeEEEEEeCCCCcC-------------hHHHHHhhh-hcCCEEEEEEeCCCCccccccCCCcch
Q psy10355 14 KGKTVEVGRAYFETD-RKHFTILDAPGHKS-------------FVPNMIGGT-AQADLAVLVISARKGEFETGFDRGGQT 78 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~-~~~~~iiDtpG~~~-------------~~~~~~~~~-~~~d~~ilvvD~~~~~~~~~~~~~~~~ 78 (156)
.|++.+.....+... ..+++|+||||..+ +...+..++ ..+|++++|+|++.+. ....
T Consensus 133 ~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~-------~~~d 205 (772)
T 3zvr_A 133 KGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL-------ANSD 205 (772)
T ss_dssp TCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCS-------SSCH
T ss_pred CcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCc-------chhH
Confidence 455555555555553 45799999999755 223344444 4689999999998765 2333
Q ss_pred H-HHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 79 R-EHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 79 ~-~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. ..+..+...+.| +|+|+||+|+........ . +.. .+...+. ....+++++||++|.|++.|.
T Consensus 206 ~l~ll~~L~~~g~p-vIlVlNKiDlv~~~~~~~---~----il~-~~~~~l~-lg~~~VV~iSA~~G~GvdeL~ 269 (772)
T 3zvr_A 206 ALKIAKEVDPQGQR-TIGVITKLDLMDEGTDAR---D----VLE-NKLLPLR-RGYIGVVNRSQKDIDGKKDIT 269 (772)
T ss_dssp HHHHHHHHCTTCSS-EEEEEECTTSSCTTCCSH---H----HHT-TCSSCCS-SCEEECCCCCCEESSSSEEHH
T ss_pred HHHHHHHHHhcCCC-EEEEEeCcccCCcchhhH---H----HHH-HHhhhhh-ccCCceEEecccccccchhHH
Confidence 3 566666667788 899999999864322111 1 100 0000000 012478999999999998764
No 195
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.07 E-value=3.8e-10 Score=81.96 Aligned_cols=106 Identities=10% Similarity=0.073 Sum_probs=62.1
Q ss_pred CeEEEEEeCCCCcChHHH------HHhhhhcCCEEEEEEeCCCCccccccCCCcchHH-H----HHHHHHcCCCcEEEEE
Q psy10355 29 RKHFTILDAPGHKSFVPN------MIGGTAQADLAVLVISARKGEFETGFDRGGQTRE-H----AMLAKTAGVKHLVVLI 97 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~------~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~ivv~ 97 (156)
++.+.||||||+.++... ...++.. +++++++|+.... ...... . .......+.| +++++
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~-------~~~~~~~~~~~~~~~~~~~~~p-~~iv~ 178 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILK-------KPNDYCFVRFFALLIDLRLGAT-TIPAL 178 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCC-------SHHHHHHHHHHHHHHHHHHTSC-EEEEE
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhc-------CHHHHHHHHHHHHHHhcccCCC-eEEEE
Confidence 358999999999765322 2234556 8999999986543 111111 1 1222334778 79999
Q ss_pred eCCCCCCcchhHHHHHHHHHHH---HH---------------------HHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 98 NKMDDPTVMWSEARYNECKDKI---LP---------------------YLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 98 NK~Dl~~~~~~~~~~~~~~~~~---~~---------------------~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
||+|+.... ..+++.+.+ .. .++..+. ..+++++||++|+|+++|.
T Consensus 179 NK~D~~~~~----~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~SA~~~~gi~~l~ 248 (262)
T 1yrb_A 179 NKVDLLSEE----EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP----PVRVLYLSAKTREGFEDLE 248 (262)
T ss_dssp CCGGGCCHH----HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC----CCCCEECCTTTCTTHHHHH
T ss_pred ecccccccc----cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC----cccceEEEecCcccHHHHH
Confidence 999975321 111111111 11 1223321 2478999999999998764
No 196
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.04 E-value=5e-09 Score=76.73 Aligned_cols=85 Identities=12% Similarity=-0.021 Sum_probs=56.2
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChH---H----HHHhh--hhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFV---P----NMIGG--TAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~---~----~~~~~--~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..|+|.......+..++..+.+|||||+.++. . .+..+ .+.+|++++|+|++...+ .......+.
T Consensus 70 ~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~------~~~~~~~~~ 143 (270)
T 1h65_A 70 FQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRV------DNLDKLVAK 143 (270)
T ss_dssp SSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCC------CHHHHHHHH
T ss_pred CCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcC------CHHHHHHHH
Confidence 45777777778888899999999999997653 1 11122 247899999998854221 122233333
Q ss_pred HHHH-cC----CCcEEEEEeCCCCCC
Q psy10355 84 LAKT-AG----VKHLVVLINKMDDPT 104 (156)
Q Consensus 84 ~~~~-~~----~~~~ivv~NK~Dl~~ 104 (156)
.+.. .+ .| +++|+||+|+..
T Consensus 144 ~l~~~~~~~~~~~-iivV~nK~Dl~~ 168 (270)
T 1h65_A 144 AITDSFGKGIWNK-AIVALTHAQFSP 168 (270)
T ss_dssp HHHHHHCGGGGGG-EEEEEECCSCCC
T ss_pred HHHHHhCcccccC-EEEEEECcccCC
Confidence 3332 23 46 899999999864
No 197
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.02 E-value=3.1e-10 Score=84.73 Aligned_cols=96 Identities=14% Similarity=0.062 Sum_probs=62.4
Q ss_pred CcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHH
Q psy10355 40 HKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKI 119 (156)
Q Consensus 40 ~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~ 119 (156)
++++......+++++|++++|+|++++.+ ++ ......+..+...++| +++|+||+|+... ..... .++.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~--s~---~~l~~~l~~~~~~~~~-~ilV~NK~DL~~~----~~v~~-~~~~ 134 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEF--NN---YLLDNMLVVYEYFKVE-PVIVFNKIDLLNE----EEKKE-LERW 134 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTC--CH---HHHHHHHHHHHHTTCE-EEEEECCGGGCCH----HHHHH-HHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCC--CH---HHHHHHHHHHHhCCCC-EEEEEEcccCCCc----cccHH-HHHH
Confidence 56666666678999999999999986531 00 1112333444556788 7999999998631 11111 1223
Q ss_pred HHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 120 LPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 120 ~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
...++.. +.+++++||++|+|+++|..
T Consensus 135 ~~~~~~~------g~~~~~~SA~~g~gi~~L~~ 161 (302)
T 2yv5_A 135 ISIYRDA------GYDVLKVSAKTGEGIDELVD 161 (302)
T ss_dssp HHHHHHT------TCEEEECCTTTCTTHHHHHH
T ss_pred HHHHHHC------CCeEEEEECCCCCCHHHHHh
Confidence 3444444 35899999999999988653
No 198
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.01 E-value=5.5e-10 Score=84.99 Aligned_cols=120 Identities=13% Similarity=0.065 Sum_probs=70.3
Q ss_pred cCceeeeeeEEEEeC-CeEEEEEeCCCCcC-------------hHHHHHhhhhcCC-EEEEEEeCCCCccccccCCCcch
Q psy10355 14 KGKTVEVGRAYFETD-RKHFTILDAPGHKS-------------FVPNMIGGTAQAD-LAVLVISARKGEFETGFDRGGQT 78 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~-~~~~~iiDtpG~~~-------------~~~~~~~~~~~~d-~~ilvvD~~~~~~~~~~~~~~~~ 78 (156)
.|+........+... ...++||||||+.+ +...+..+++.++ ++++|+|++.+. ....
T Consensus 113 ~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~-------~~~~ 185 (353)
T 2x2e_A 113 KGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL-------ANSD 185 (353)
T ss_dssp TCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCG-------GGCH
T ss_pred CCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCcc-------chhH
Confidence 455555444444443 57899999999742 3455667776666 455566776544 1222
Q ss_pred -HHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCC-CeEEEeecccCCCCccCC
Q psy10355 79 -REHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKD-LSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 79 -~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~Sa~~g~gi~~l~ 151 (156)
...+..+...+.| +++|+||+|+....... .. .++...+....+ .+++++||++|.|++.|.
T Consensus 186 ~~~i~~~~~~~~~~-~i~V~NK~Dl~~~~~~~--~~--------~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~ 249 (353)
T 2x2e_A 186 ALKVAKEVDPQGQR-TIGVITKLDLMDEGTDA--RD--------VLENKLLPLRRGYIGVVNRSQKDIDGKKDIT 249 (353)
T ss_dssp HHHHHHHHCTTCTT-EEEEEECGGGSCTTCCC--HH--------HHTTCSSCCTTCEEECCCCCHHHHHTTCCHH
T ss_pred HHHHHHHhCcCCCc-eEEEeccccccCcchhH--HH--------HHhCCcccccCCceEEEeCCcccccccccHH
Confidence 2345555556778 89999999986422110 11 111110100012 368999999999988763
No 199
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.97 E-value=5.4e-10 Score=82.46 Aligned_cols=95 Identities=15% Similarity=0.044 Sum_probs=60.9
Q ss_pred CCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH----HHH---H-HcCCCcEEEEEeC-CCCCCcch
Q psy10355 37 APGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA----MLA---K-TAGVKHLVVLINK-MDDPTVMW 107 (156)
Q Consensus 37 tpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~----~~~---~-~~~~~~~ivv~NK-~Dl~~~~~ 107 (156)
..|+.+++..|..|+.++|++|||||+++.. +++ ..+.+ ..+ . ..+.| ++|++|| .|+..+..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDre---Rle----ak~EL~eL~~mL~e~~~l~~ap-LLVfANKkQDlp~Ams 265 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHK---RHE----WQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRMP 265 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTC---CCC----HHHHHHHHHHHHCHHHHCTTCC-EEEEEEESSTTSCBCC
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHh---HHH----HHHHHHHHHHHhcchhhcCCCe-EEEEeCCcccccCCCC
Confidence 4588899999999999999999999998753 122 22211 111 1 14788 8999997 58765432
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
. .++.+.+ ...... ..|.+.++||++|+|+.+
T Consensus 266 ~----~EI~e~L----~L~~l~--r~W~Iq~csA~tGeGL~E 297 (312)
T 3l2o_B 266 C----FYLAHEL----HLNLLN--HPWLVQDTEAETLTGFLN 297 (312)
T ss_dssp H----HHHHHHT----TGGGGC--SCEEEEEEETTTCTTHHH
T ss_pred H----HHHHHHc----CCccCC--CcEEEEecccCCCcCHHH
Confidence 2 2222222 222121 468999999999999864
No 200
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.90 E-value=1.4e-08 Score=78.95 Aligned_cols=118 Identities=17% Similarity=0.123 Sum_probs=70.2
Q ss_pred CceeeeeeEEEEeCC-eEEEEEeCCCCcCh-------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-
Q psy10355 15 GKTVEVGRAYFETDR-KHFTILDAPGHKSF-------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA- 85 (156)
Q Consensus 15 g~t~~~~~~~~~~~~-~~~~iiDtpG~~~~-------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~- 85 (156)
.+|.......+..++ ..+.++||||+.+. .......+..++.+++++|++...+ .........+..+
T Consensus 189 ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~----~~ls~g~~el~~la 264 (416)
T 1udx_A 189 FTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPL----KTLETLRKEVGAYD 264 (416)
T ss_dssp TCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHH----HHHHHHHHHHHHHC
T ss_pred cceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCH----HHHHHHHHHHHHHh
Confidence 445566666666665 78999999998432 1223334567999999999962111 0001111111111
Q ss_pred H-HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 86 K-TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 86 ~-~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. ..+.| .++++||+|+... ..+.. +...++.. +++++++||++++|+++|.
T Consensus 265 ~aL~~~P-~ILVlNKlDl~~~----~~~~~----l~~~l~~~------g~~vi~iSA~~g~gi~eL~ 316 (416)
T 1udx_A 265 PALLRRP-SLVALNKVDLLEE----EAVKA----LADALARE------GLAVLPVSALTGAGLPALK 316 (416)
T ss_dssp HHHHHSC-EEEEEECCTTSCH----HHHHH----HHHHHHTT------TSCEEECCTTTCTTHHHHH
T ss_pred HHhhcCC-EEEEEECCChhhH----HHHHH----HHHHHHhc------CCeEEEEECCCccCHHHHH
Confidence 1 13568 6889999997632 12222 33333322 4689999999999988753
No 201
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.89 E-value=6.3e-09 Score=76.92 Aligned_cols=94 Identities=13% Similarity=0.058 Sum_probs=59.1
Q ss_pred EEeCCCCc-ChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHH
Q psy10355 34 ILDAPGHK-SFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARY 112 (156)
Q Consensus 34 iiDtpG~~-~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~ 112 (156)
+-+.|||. +..+.+...+.++|+++.|+|+..+.. .........+ .+.| .++++||+|+.. ....
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~-------~~~~~l~~~l--~~kp-~ilVlNK~DL~~----~~~~ 68 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMS-------SRNPMIEDIL--KNKP-RIMLLNKADKAD----AAVT 68 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTT-------TSCHHHHHHC--SSSC-EEEEEECGGGSC----HHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCc-------cCCHHHHHHH--CCCC-EEEEEECcccCC----HHHH
Confidence 44679997 456788899999999999999987652 2211221222 4677 799999999863 1111
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 113 NECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+....+++.. +.+++++||++|.|+++|.
T Consensus 69 ----~~~~~~~~~~------g~~~i~iSA~~~~gi~~L~ 97 (282)
T 1puj_A 69 ----QQWKEHFENQ------GIRSLSINSVNGQGLNQIV 97 (282)
T ss_dssp ----HHHHHHHHTT------TCCEEECCTTTCTTGGGHH
T ss_pred ----HHHHHHHHhc------CCcEEEEECCCcccHHHHH
Confidence 1122333332 3588999999999998753
No 202
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.87 E-value=4.2e-09 Score=84.51 Aligned_cols=68 Identities=26% Similarity=0.297 Sum_probs=51.5
Q ss_pred eEEEEEeCCCCcC-----------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEe
Q psy10355 30 KHFTILDAPGHKS-----------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLIN 98 (156)
Q Consensus 30 ~~~~iiDtpG~~~-----------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~N 98 (156)
.++.||||||+.+ |...+..++..+|++++|+|++.... .......+..+...+.| +++|+|
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~------~~~~~~~l~~l~~~~~p-vilVlN 226 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEI------SDEFSEAIGALRGHEDK-IRVVLN 226 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCC------CHHHHHHHHHTTTCGGG-EEEEEE
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCC------CHHHHHHHHHHHhcCCC-EEEEEE
Confidence 4799999999975 66778888999999999999976311 23444555555555667 899999
Q ss_pred CCCCCC
Q psy10355 99 KMDDPT 104 (156)
Q Consensus 99 K~Dl~~ 104 (156)
|+|+..
T Consensus 227 K~Dl~~ 232 (550)
T 2qpt_A 227 KADMVE 232 (550)
T ss_dssp CGGGSC
T ss_pred CCCccC
Confidence 999863
No 203
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.82 E-value=7.6e-09 Score=78.66 Aligned_cols=106 Identities=12% Similarity=0.034 Sum_probs=58.1
Q ss_pred eCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcc
Q psy10355 27 TDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 27 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
..+..+.++||||.... .......+|++++|+|+..+.. .+. +.. .....| .++++||+|+..
T Consensus 164 ~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~-------~~~---i~~-~il~~~-~ivVlNK~Dl~~-- 226 (349)
T 2www_A 164 GAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDE-------LQG---IKR-GIIEMA-DLVAVTKSDGDL-- 226 (349)
T ss_dssp HTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC-----------------------CCSC-SEEEECCCSGGG--
T ss_pred cCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchh-------HHH---hHH-HHHhcC-CEEEEeeecCCC--
Confidence 36788999999997532 2334578999999999976430 111 110 113567 588999999752
Q ss_pred hhHHHHHHHHHHHHHHHHHcCC-CCCCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGF-NAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..........+...++.... ......+++++||++|+|++.|.
T Consensus 227 --~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~ 270 (349)
T 2www_A 227 --IVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMW 270 (349)
T ss_dssp --HHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHH
T ss_pred --chhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHH
Confidence 11111112223222221110 00013578999999999998764
No 204
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.82 E-value=3.5e-09 Score=81.07 Aligned_cols=104 Identities=13% Similarity=0.003 Sum_probs=63.4
Q ss_pred EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHH
Q psy10355 31 HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEA 110 (156)
Q Consensus 31 ~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~ 110 (156)
.+.-+++| +++|.+....+++.++++++|+|+++... ++ ....... + .+.| +++|+||+|+......
T Consensus 50 ~~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~--~~~l~~~---l--~~~p-iilV~NK~DLl~~~~~-- 116 (369)
T 3ec1_A 50 EVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNG--SF--IPGLPRF---A--ADNP-ILLVGNKADLLPRSVK-- 116 (369)
T ss_dssp ----------CHHHHHHHHHHHHCCEEEEEEETTCSGG--GC--CSSHHHH---C--TTSC-EEEEEECGGGSCTTCC--
T ss_pred cccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCC--ch--hhHHHHH---h--CCCC-EEEEEEChhcCCCccC--
Confidence 34445554 78888888888899999999999987541 10 1111111 1 2567 8999999998643221
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 111 RYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.+++.+...++..|+. ..+++.+||++|.|+++|.
T Consensus 117 -~~~~~~~l~~~~~~~g~~---~~~v~~iSA~~g~gi~~L~ 153 (369)
T 3ec1_A 117 -YPKLLRWMRRMAEELGLC---PVDVCLVSAAKGIGMAKVM 153 (369)
T ss_dssp -HHHHHHHHHHHHHTTTCC---CSEEEECBTTTTBTHHHHH
T ss_pred -HHHHHHHHHHHHHHcCCC---cccEEEEECCCCCCHHHHH
Confidence 233444455555666542 2378999999999998764
No 205
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.79 E-value=3.7e-09 Score=80.96 Aligned_cols=97 Identities=15% Similarity=0.050 Sum_probs=63.8
Q ss_pred CCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHH
Q psy10355 39 GHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDK 118 (156)
Q Consensus 39 G~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~ 118 (156)
..++|.+.+..+.+.++++++|+|+++.. ..+...+... ..+.| +++|+||+|+...... .+.+++.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~--------~~~~~~l~~~-~~~~p-~ilV~NK~DL~~~~~~---~~~~~~~ 121 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN--------GSWLPGLHRF-VGNNK-VLLVGNKADLIPKSVK---HDKVKHW 121 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH--------HHCCTTHHHH-SSSSC-EEEEEECGGGSCTTSC---HHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc--------ccHHHHHHHH-hCCCc-EEEEEEChhcCCcccC---HHHHHHH
Confidence 35778888888889999999999997632 1121122211 13677 8999999998643221 2334444
Q ss_pred HHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 119 ILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...++..|+. ..+++.+||++|.|+++|.
T Consensus 122 l~~~~~~~g~~---~~~v~~iSA~~g~gi~~L~ 151 (368)
T 3h2y_A 122 MRYSAKQLGLK---PEDVFLISAAKGQGIAELA 151 (368)
T ss_dssp HHHHHHHTTCC---CSEEEECCTTTCTTHHHHH
T ss_pred HHHHHHHcCCC---cccEEEEeCCCCcCHHHHH
Confidence 45555666542 2378999999999998764
No 206
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.72 E-value=2.6e-09 Score=75.58 Aligned_cols=99 Identities=12% Similarity=0.069 Sum_probs=58.8
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
.+..+.+|||||+..... .+....+.+++|+|+..+. ... +......+.| .++++||+|+...
T Consensus 107 ~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~--------~~~---~~~~~~~~~~-~iiv~NK~Dl~~~-- 169 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGD--------DVV---EKHPEIFRVA-DLIVINKVALAEA-- 169 (221)
T ss_dssp TTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCT--------THH---HHCHHHHHTC-SEEEEECGGGHHH--
T ss_pred CCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcc--------hhh---hhhhhhhhcC-CEEEEecccCCcc--
Confidence 456899999999521110 1112568899999997653 111 1112223568 6899999997421
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
......++.+.+ +..+ ...+++++||++|+|+++|.
T Consensus 170 ~~~~~~~~~~~~----~~~~----~~~~i~~~Sa~~g~gi~~l~ 205 (221)
T 2wsm_A 170 VGADVEKMKADA----KLIN----PRAKIIEMDLKTGKGFEEWI 205 (221)
T ss_dssp HTCCHHHHHHHH----HHHC----TTSEEEECBTTTTBTHHHHH
T ss_pred hhhHHHHHHHHH----HHhC----CCCeEEEeecCCCCCHHHHH
Confidence 001223333333 3332 14689999999999998753
No 207
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.66 E-value=4.9e-08 Score=72.77 Aligned_cols=102 Identities=16% Similarity=0.091 Sum_probs=50.3
Q ss_pred eEEEEEeCCCC-------cChHHHHH-------hhhhcC-------------CEEEEEEeCCCC-ccccccCCCcchHHH
Q psy10355 30 KHFTILDAPGH-------KSFVPNMI-------GGTAQA-------------DLAVLVISARKG-EFETGFDRGGQTREH 81 (156)
Q Consensus 30 ~~~~iiDtpG~-------~~~~~~~~-------~~~~~~-------------d~~ilvvD~~~~-~~~~~~~~~~~~~~~ 81 (156)
..+++|||||+ +++..... .+++.. .+++++++++.+ + .+...+.
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~L-------d~~~~~~ 148 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGL-------KPLDVAF 148 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSC-------CHHHHHH
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCC-------CHHHHHH
Confidence 57999999998 44333222 333332 335566655442 3 2223333
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+..+. .+.+ +++|+||.|+.. .......++++...++.. +++++++||++| |++++.
T Consensus 149 l~~l~-~~~~-iilV~~K~Dl~~----~~e~~~~~~~~~~~~~~~------~~~~~e~Sa~~~-~v~e~f 205 (301)
T 2qnr_A 149 MKAIH-NKVN-IVPVIAKADTLT----LKERERLKKRILDEIEEH------NIKIYHLPDAES-DEDEDF 205 (301)
T ss_dssp HHHHT-TTSC-EEEEECCGGGSC----HHHHHHHHHHHHHHHHHT------TCCCCCCC----------C
T ss_pred HHHHH-hcCC-EEEEEEeCCCCC----HHHHHHHHHHHHHHHHHc------CCeEEecCCccc-cccHHH
Confidence 33332 3457 899999999763 222333445566666655 358899999999 998764
No 208
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.57 E-value=2.8e-08 Score=72.70 Aligned_cols=88 Identities=20% Similarity=0.164 Sum_probs=53.9
Q ss_pred CCCCcCh-HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHH
Q psy10355 37 APGHKSF-VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNEC 115 (156)
Q Consensus 37 tpG~~~~-~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~ 115 (156)
-|||... .+.+...+.++|+++.|+|+..+..... .... . + +.| .++++||+|+.. ....+
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~----~~l~-l---l---~k~-~iivlNK~DL~~----~~~~~-- 65 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSA----YGVD-F---S---RKE-TIILLNKVDIAD----EKTTK-- 65 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSC----TTSC-C---T---TSE-EEEEEECGGGSC----HHHHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcC----hHHH-h---c---CCC-cEEEEECccCCC----HHHHH--
Confidence 4888643 4678888999999999999987652111 1111 1 1 677 799999999873 11111
Q ss_pred HHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 116 KDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
....+++.. +.++ ++||++|.|++.|.
T Consensus 66 --~~~~~~~~~------g~~v-~iSa~~~~gi~~L~ 92 (262)
T 3cnl_A 66 --KWVEFFKKQ------GKRV-ITTHKGEPRKVLLK 92 (262)
T ss_dssp --HHHHHHHHT------TCCE-EECCTTSCHHHHHH
T ss_pred --HHHHHHHHc------CCeE-EEECCCCcCHHHHH
Confidence 222334433 3467 99999999987653
No 209
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.53 E-value=2.9e-07 Score=70.19 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=41.1
Q ss_pred hhcCceeeeeeEEEEeCC-----------------eEEEEEeCCCCcChHH-------HHHhhhhcCCEEEEEEeCCC
Q psy10355 12 REKGKTVEVGRAYFETDR-----------------KHFTILDAPGHKSFVP-------NMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~-----------------~~~~iiDtpG~~~~~~-------~~~~~~~~~d~~ilvvD~~~ 65 (156)
..++.|++...+.+.+.+ ..+.+|||||+.++.. ....+++.+|++++|+|+++
T Consensus 31 ~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 31 NYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp --CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred CCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 345778888777777765 5799999999987642 24456799999999999976
No 210
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.53 E-value=2e-07 Score=69.59 Aligned_cols=89 Identities=17% Similarity=0.142 Sum_probs=57.0
Q ss_pred HHhhhhcCCEEEEEEeCCCCccccccCCCcc-hHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHH
Q psy10355 47 MIGGTAQADLAVLVISARKGEFETGFDRGGQ-TREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKK 125 (156)
Q Consensus 47 ~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 125 (156)
....+.++|.+++|+|+..+.+ ... ....+..+...+++ .++|+||+|+.... ...+..+.+...++.
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~------~~~~i~r~L~~~~~~~~~-~vivlnK~DL~~~~----~~~~~~~~~~~~y~~ 148 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSF------STALLDRFLVLVEANDIQ-PIICITKMDLIEDQ----DTEDTIQAYAEDYRN 148 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTC------CHHHHHHHHHHHHTTTCE-EEEEEECGGGCCCH----HHHHHHHHHHHHHHH
T ss_pred hHHHHHhCCEEEEEEeCCCCCC------CHHHHHHHHHHHHHCCCC-EEEEEECCccCchh----hhHHHHHHHHHHHHh
Confidence 3356889999999999986652 111 22233334456888 69999999986421 100111223344444
Q ss_pred cCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 126 LGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 126 ~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.| .+++.+||++|.|++.|..
T Consensus 149 ~g------~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 149 IG------YDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp HT------CCEEECCHHHHTTCTTTGG
T ss_pred CC------CeEEEEecCCCCCHHHHHh
Confidence 44 4889999999999988754
No 211
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.45 E-value=3.4e-07 Score=71.15 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=49.8
Q ss_pred eEEEEEeCCCCcChHH------HH-------------------HhhhhcCC--EEEEEEeCC-CCccccccCCCcchHHH
Q psy10355 30 KHFTILDAPGHKSFVP------NM-------------------IGGTAQAD--LAVLVISAR-KGEFETGFDRGGQTREH 81 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~------~~-------------------~~~~~~~d--~~ilvvD~~-~~~~~~~~~~~~~~~~~ 81 (156)
..+++|||||+..+.. .. ...+..++ +++++++++ .++ .+.....
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L-------~~~d~~~ 160 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGL-------KPLDIEF 160 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSC-------CHHHHHH
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCC-------CHHHHHH
Confidence 3689999999876421 00 11223344 455555554 343 2333344
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+..+. .+++ +|+|+||+|+.. ...+...++.+...+...+ ++++.+||+++.+++.+
T Consensus 161 lk~L~-~~v~-iIlVinK~Dll~----~~ev~~~k~~i~~~~~~~~------i~~~~~sa~~~~~v~~~ 217 (418)
T 2qag_C 161 MKRLH-EKVN-IIPLIAKADTLT----PEECQQFKKQIMKEIQEHK------IKIYEFPETDDEEENKL 217 (418)
T ss_dssp HHHHT-TTSE-EEEEEESTTSSC----HHHHHHHHHHHHHHHHHHT------CCCCCCC----------
T ss_pred HHHHh-ccCc-EEEEEEcccCcc----HHHHHHHHHHHHHHHHHcC------CeEEeCCCCCCcCHHHH
Confidence 44443 3677 899999999863 3335555566666666654 57899999999988753
No 212
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.43 E-value=5.6e-07 Score=68.99 Aligned_cols=84 Identities=13% Similarity=0.088 Sum_probs=62.0
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.-.+++|+++..+.+.+.+.++.++||||..+ ........++.||++++|+|++++. .+...+..
T Consensus 100 ~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~--------~~~~~i~~ 171 (376)
T 4a9a_A 100 AEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPL--------HHKQIIEK 171 (376)
T ss_dssp GGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHH--------HHHHHHHH
T ss_pred cCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccH--------HHHHHHHH
Confidence 44579999999999999999999999999753 2345677889999999999997643 22222222
Q ss_pred HHHHc-----CCCcEEEEEeCCCCC
Q psy10355 84 LAKTA-----GVKHLVVLINKMDDP 103 (156)
Q Consensus 84 ~~~~~-----~~~~~ivv~NK~Dl~ 103 (156)
.+... ..| .++++||+|..
T Consensus 172 EL~~~~~~l~~k~-~~i~~nK~d~~ 195 (376)
T 4a9a_A 172 ELEGVGIRLNKTP-PDILIKKKEKG 195 (376)
T ss_dssp HHHHTTEEETCCC-CCEEEEECSSS
T ss_pred HHHHhhHhhccCC-hhhhhhHhhhh
Confidence 33322 346 58899999963
No 213
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.39 E-value=9.1e-07 Score=66.89 Aligned_cols=107 Identities=16% Similarity=0.106 Sum_probs=58.8
Q ss_pred eCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcc
Q psy10355 27 TDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 27 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
..+..+.|+||||...-.. .....+|.+++|+|+..+. . . ...... . ...+ .++++||+|+...
T Consensus 145 ~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~-~--~---~~i~~~---i--~~~~-~ivvlNK~Dl~~~- 208 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGD-E--L---QGIKKG---I--FELA-DMIAVNKADDGDG- 208 (337)
T ss_dssp HTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------------CCTT---H--HHHC-SEEEEECCSTTCC-
T ss_pred cCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcc-c--H---HHHHHH---H--hccc-cEEEEEchhccCc-
Confidence 3688999999999865322 2346899999999986432 0 0 000000 0 1235 3667899996421
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCC-CCCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFN-AAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
........+.+...+....-. .....+++++||++|+|+++|.
T Consensus 209 --~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~ 252 (337)
T 2qm8_A 209 --ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLW 252 (337)
T ss_dssp --HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHH
T ss_pred --hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHH
Confidence 111122223333222222100 0013478999999999998764
No 214
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.37 E-value=2.2e-06 Score=65.56 Aligned_cols=37 Identities=11% Similarity=0.086 Sum_probs=30.2
Q ss_pred CeEEEEEeCCCCcCh-------HHHHHhhhhcCCEEEEEEeCCC
Q psy10355 29 RKHFTILDAPGHKSF-------VPNMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~-------~~~~~~~~~~~d~~ilvvD~~~ 65 (156)
...+.+|||||+.++ .......++.+|++++|+|+++
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 457999999998764 3445667899999999999976
No 215
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.21 E-value=3.3e-06 Score=67.07 Aligned_cols=65 Identities=25% Similarity=0.350 Sum_probs=42.3
Q ss_pred CCeEEEEEeCCCCcCh----HHHHHhh--hhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcE-EEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSF----VPNMIGG--TAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHL-VVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~----~~~~~~~--~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ivv~NK~ 100 (156)
.++.+.||||||.... ....... +..+|.+++|+|+..+. ........+... +| + ++++||+
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~---------~~~~~a~~~~~~-~~-i~gvVlNK~ 250 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ---------ACEAQAKAFKDK-VD-VASVIVTKL 250 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT---------THHHHHHHHHHH-HC-CCCEEEECT
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc---------cHHHHHHHHHhh-cC-ceEEEEeCC
Confidence 6789999999998642 2222222 23789999999998764 123333333322 45 3 7899999
Q ss_pred CCC
Q psy10355 101 DDP 103 (156)
Q Consensus 101 Dl~ 103 (156)
|..
T Consensus 251 D~~ 253 (504)
T 2j37_W 251 DGH 253 (504)
T ss_dssp TSC
T ss_pred ccc
Confidence 975
No 216
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.07 E-value=7.5e-06 Score=62.33 Aligned_cols=84 Identities=18% Similarity=0.142 Sum_probs=49.5
Q ss_pred hhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCC
Q psy10355 50 GTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFN 129 (156)
Q Consensus 50 ~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (156)
.+.++|.+++| |+..+.+ . .......+..+...+++ .++|+||+|+... .....+++ ....+...|
T Consensus 127 i~anvD~v~iv-~a~~P~~----~-~~~i~r~L~~a~~~~~~-~iivlNK~DL~~~----~~~~~~~~-~~~~y~~~G-- 192 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPEL----S-LNIIDRYLVGCETLQVE-PLIVLNKIDLLDD----EGMDFVNE-QMDIYRNIG-- 192 (358)
T ss_dssp EEECCCEEEEE-EESTTTC----C-HHHHHHHHHHHHHHTCE-EEEEEECGGGCCH----HHHHHHHH-HHHHHHTTT--
T ss_pred HHhcCCEEEEE-EeCCCCC----C-HHHHHHHHHHHHhcCCC-EEEEEECccCCCc----hhHHHHHH-HHHHHHhCC--
Confidence 35789998876 4444321 0 01122333444457888 5999999998632 11111222 223344443
Q ss_pred CCCCCeEEEeecccCCCCccCC
Q psy10355 130 AAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 130 ~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++++++||.+|.|++.|.
T Consensus 193 ----~~v~~~Sa~~~~gl~~L~ 210 (358)
T 2rcn_A 193 ----YRVLMVSSHTQDGLKPLE 210 (358)
T ss_dssp ----CCEEECBTTTTBTHHHHH
T ss_pred ----CcEEEEecCCCcCHHHHH
Confidence 578999999999987653
No 217
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.98 E-value=6.1e-05 Score=58.84 Aligned_cols=96 Identities=16% Similarity=0.138 Sum_probs=56.8
Q ss_pred CCeEEEEEeCCCCcChHH----H--HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVP----N--MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~----~--~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.++.+.|+||||...... . .......+|.+++|+|+..+. ............ .+...+++||+|
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq---------~a~~~a~~f~~~-~~i~gVIlTKlD 250 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ---------QAYNQALAFKEA-TPIGSIIVTKLD 250 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---------GHHHHHHHHHHS-CTTEEEEEECCS
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch---------hHHHHHHHHHhh-CCCeEEEEECCC
Confidence 457899999999644211 1 112234579999999997753 233344444433 332578999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 102 DPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..... - . +..+.... +.|+..++. |++++.|.
T Consensus 251 ~~~~g--G----~----~ls~~~~~------g~PI~fig~--Ge~vddL~ 282 (443)
T 3dm5_A 251 GSAKG--G----G----ALSAVAAT------GAPIKFIGT--GEKIDDIE 282 (443)
T ss_dssp SCSSH--H----H----HHHHHHTT------CCCEEEEEC--SSSTTCEE
T ss_pred Ccccc--c----H----HHHHHHHH------CCCEEEEEc--CCChHHhh
Confidence 65321 1 1 11222222 457777775 99998764
No 218
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.82 E-value=0.0002 Score=53.08 Aligned_cols=96 Identities=18% Similarity=0.151 Sum_probs=57.2
Q ss_pred CCeEEEEEeCCCCcC--hHHHHH------hhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeC
Q psy10355 28 DRKHFTILDAPGHKS--FVPNMI------GGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINK 99 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~--~~~~~~------~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK 99 (156)
.++.+.++||||... ...... .....+|.+++|+|+..+ .+.......... ..+-..+++||
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---------~~~~~~~~~~~~-~~~i~gvVlnk 248 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---------QKAYDLASKFNQ-ASKIGTIIITK 248 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---------GGHHHHHHHHHH-TCTTEEEEEEC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---------HHHHHHHHHHHh-hCCCCEEEEeC
Confidence 567899999999876 322211 234578999999999653 233333443333 35535779999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 100 MDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|.... ... +..+.... +.|+..++ +|++++.|.
T Consensus 249 ~D~~~~------~g~----~~~~~~~~------~~pi~~i~--~Ge~v~dl~ 282 (297)
T 1j8m_F 249 MDGTAK------GGG----ALSAVAAT------GATIKFIG--TGEKIDELE 282 (297)
T ss_dssp GGGCTT------HHH----HHHHHHTT------TCCEEEEE--CSSSTTCEE
T ss_pred CCCCcc------hHH----HHHHHHHH------CcCEEEEe--CCCChhhcc
Confidence 995421 111 11222333 35776665 688887653
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.82 E-value=6.9e-07 Score=68.34 Aligned_cols=116 Identities=16% Similarity=0.055 Sum_probs=63.5
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcChH-------HHHHhhh---hcCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFV-------PNMIGGT---AQADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~-------~~~~~~~---~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
..+|+|.+.....+. ..+.++||||..... ......+ ...+.+++++++....+..++. .
T Consensus 197 ~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~---~---- 266 (369)
T 3ec1_A 197 YFPGTTLDMIEIPLE---SGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLA---R---- 266 (369)
T ss_dssp ECTTSSCEEEEEECS---TTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTE---E----
T ss_pred CCCCeEEeeEEEEeC---CCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEE---E----
Confidence 355778776654432 248999999975321 1112222 6679999999985432111110 0
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+..+...+.| +++++||+|...........+. + -+..| ..+.|.++..+.++.+++
T Consensus 267 l~~l~~~~~~-~~~v~~k~d~~~~~~~~~~~~~----~---~~~~g------~~l~p~~~~~~~~~~~l~ 322 (369)
T 3ec1_A 267 LDYIKGGRRS-FVCYMANELTVHRTKLEKADSL----Y---ANQLG------ELLSPPSKRYAAEFPPLV 322 (369)
T ss_dssp EEEEESSSEE-EEEEECTTSCEEEEEGGGHHHH----H---HHHBT------TTBCSSCGGGTTTCCCEE
T ss_pred EEEccCCCce-EEEEecCCcccccccHHHHHHH----H---HHhcC------CccCCCCchhhhhccCcE
Confidence 1112234567 8999999997543322221121 2 12222 356677777776666554
No 220
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.80 E-value=1.3e-05 Score=56.50 Aligned_cols=96 Identities=14% Similarity=0.051 Sum_probs=51.0
Q ss_pred EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHH
Q psy10355 31 HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEA 110 (156)
Q Consensus 31 ~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~ 110 (156)
.+.++|++|.-... ...-...+..+.++|+..+.. . ..... . ..+.| .++++||+|+... ...
T Consensus 120 d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~--~---~~~~~---~---~~~~~-~iiv~NK~Dl~~~--~~~ 182 (226)
T 2hf9_A 120 DLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDD--T---IEKHP---G---IMKTA-DLIVINKIDLADA--VGA 182 (226)
T ss_dssp SEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTT--T---TTTCH---H---HHTTC-SEEEEECGGGHHH--HTC
T ss_pred CEEEEeCCCCccCc---chhhhccCcEEEEEecCcchh--h---Hhhhh---h---HhhcC-CEEEEeccccCch--hHH
Confidence 67888888842111 011123355677777543220 0 00111 1 13567 6999999997421 001
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 111 RYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+ +...++..+ ...+++++||++|+|+++|.
T Consensus 183 ~~~~----~~~~~~~~~----~~~~~~~~Sa~~g~gv~~l~ 215 (226)
T 2hf9_A 183 DIKK----MENDAKRIN----PDAEVVLLSLKTMEGFDKVL 215 (226)
T ss_dssp CHHH----HHHHHHHHC----TTSEEEECCTTTCTTHHHHH
T ss_pred HHHH----HHHHHHHhC----CCCeEEEEEecCCCCHHHHH
Confidence 1222 222333332 14689999999999998763
No 221
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.70 E-value=0.0003 Score=54.84 Aligned_cols=96 Identities=20% Similarity=0.201 Sum_probs=56.4
Q ss_pred CCeEEEEEeCCCCcC------hHHHHHh--hhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeC
Q psy10355 28 DRKHFTILDAPGHKS------FVPNMIG--GTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINK 99 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~------~~~~~~~--~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK 99 (156)
.++.+.|+||||... +...... .....+.+++|+|+..+. ............-.+ ..+++||
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq---------~a~~~a~~f~~~~~~-~gVIlTK 247 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ---------KAYDLASRFHQASPI-GSVIITK 247 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG---------GGHHHHHHHHHHCSS-EEEEEEC
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch---------HHHHHHHHHhcccCC-cEEEEec
Confidence 467899999999644 2222222 122468999999997652 334444444433234 5789999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 100 MDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|.... . .. ........ +.|+..++. |++++.|.
T Consensus 248 lD~~a~--~----G~----als~~~~~------g~Pi~fig~--Ge~v~dL~ 281 (433)
T 3kl4_A 248 MDGTAK--G----GG----ALSAVVAT------GATIKFIGT--GEKIDELE 281 (433)
T ss_dssp GGGCSC--H----HH----HHHHHHHH------TCEEEEEEC--CSSSSCEE
T ss_pred cccccc--c----hH----HHHHHHHH------CCCEEEEEC--CCChHhCc
Confidence 996421 1 11 11112222 458877775 99887654
No 222
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.70 E-value=8.5e-07 Score=67.82 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=44.4
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChH-------HHHHhh---hhcCCEEEEEEeCCCCccccccCCCcchHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKSFV-------PNMIGG---TAQADLAVLVISARKGEFETGFDRGGQTRE 80 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~-------~~~~~~---~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~ 80 (156)
...+|+|.+.....+. ..+.++||||..+.. ...... ....+.+++++++....+..++.
T Consensus 195 ~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~------- 264 (368)
T 3h2y_A 195 SHFPGTTLDLIDIPLD---EESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLA------- 264 (368)
T ss_dssp ECCC----CEEEEESS---SSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTE-------
T ss_pred CCCCCeecceEEEEec---CCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceE-------
Confidence 3455777766654432 238999999985421 111111 35678899999985332111110
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCCC
Q psy10355 81 HAMLAKTAGVKHLVVLINKMDDPT 104 (156)
Q Consensus 81 ~~~~~~~~~~~~~ivv~NK~Dl~~ 104 (156)
.+..+...+.| +++++||+|...
T Consensus 265 ~~d~l~~~~~~-~~~v~nk~d~~~ 287 (368)
T 3h2y_A 265 RFDYVSGGRRA-FTCHFSNRLTIH 287 (368)
T ss_dssp EEEEEESSSEE-EEEEECTTSCEE
T ss_pred EEEEecCCCce-EEEEecCccccc
Confidence 01112224567 899999999764
No 223
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.63 E-value=0.00066 Score=52.92 Aligned_cols=66 Identities=21% Similarity=0.321 Sum_probs=41.7
Q ss_pred CCeEEEEEeCCCCcChHHHHH------hhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC-CcEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMI------GGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV-KHLVVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~------~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ivv~NK~ 100 (156)
.++.+.|+||||......... ..+..+|.+++|+|+..+. .......... .+. +...+++||+
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---------~~~~~~~~~~-~~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---------QAGIQAKAFK-EAVGEIGSIIVTKL 248 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---------GHHHHHHHHH-TTSCSCEEEEEECS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---------HHHHHHHHHh-hcccCCeEEEEeCC
Confidence 567899999999875422211 1223689999999997642 2222222222 234 5358899999
Q ss_pred CCC
Q psy10355 101 DDP 103 (156)
Q Consensus 101 Dl~ 103 (156)
|..
T Consensus 249 D~~ 251 (432)
T 2v3c_C 249 DGS 251 (432)
T ss_dssp SSC
T ss_pred CCc
Confidence 964
No 224
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.26 E-value=0.00023 Score=54.84 Aligned_cols=55 Identities=9% Similarity=0.034 Sum_probs=32.5
Q ss_pred HhhcCceeeeeeEEEEeCC-----------------eEEEEEeCCCCcChHH-------HHHhhhhcCCEEEEEEeCCC
Q psy10355 11 KREKGKTVEVGRAYFETDR-----------------KHFTILDAPGHKSFVP-------NMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~-----------------~~~~iiDtpG~~~~~~-------~~~~~~~~~d~~ilvvD~~~ 65 (156)
...+++|++...+.+.+.+ ..+.+|||||+.++.. .+..+++.+|++++|+|+.+
T Consensus 50 ~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 50 ENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp --------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 3456778887777776654 3599999999977543 56788899999999999864
No 225
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.14 E-value=0.0013 Score=51.11 Aligned_cols=53 Identities=13% Similarity=0.109 Sum_probs=31.0
Q ss_pred EEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHH
Q psy10355 56 LAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILP 121 (156)
Q Consensus 56 ~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 121 (156)
++.|++|+..+. ...+.+++..+. .+.| +|+++||+|... ......+++.+..
T Consensus 151 ~v~fI~d~~~~l-------~~~Dieilk~L~-~~~~-vI~Vi~KtD~Lt----~~E~~~l~~~I~~ 203 (427)
T 2qag_B 151 CLYFIAPTGHSL-------KSLDLVTMKKLD-SKVN-IIPIIAKADAIS----KSELTKFKIKITS 203 (427)
T ss_dssp EEEEECCCC----------CHHHHHHHHHTC-SCSE-EEEEESCGGGSC----HHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCC-------CHHHHHHHHHHh-hCCC-EEEEEcchhccc----hHHHHHHHHHHHH
Confidence 466677776665 244455555554 5667 999999999763 2234444554544
No 226
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=96.81 E-value=0.0045 Score=44.61 Aligned_cols=67 Identities=12% Similarity=0.078 Sum_probs=43.9
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEE-EEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLV-VLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-vv~NK~Dl 102 (156)
+.+.+.|+|||+...........+..+|.+|+|+.+.... .......+..+...+.+ ++ +++|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s-------~~~~~~~~~~l~~~~~~-~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELT-------AVIVEKAINMAEETNTS-VLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCC-------HHHHHHHHHHHHTTTCC-EEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccch-------HHHHHHHHHHHHhCCCC-EEEEEECCCcc
Confidence 5678999999987543222223334689999999876543 12334455555566777 55 89999883
No 227
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.57 E-value=0.003 Score=44.67 Aligned_cols=65 Identities=22% Similarity=0.247 Sum_probs=45.4
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
..+.+.++|||+.... .+...+..+|.+++++.++... ..........+...+.+.+.+++||.+
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s-------~~~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNS-------IKTGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHH-------HHHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHH-------HHHHHHHHHHHHHcCCccEEEEEeCCC
Confidence 5678999999986543 4556678899999999875422 122333444555667666789999999
No 228
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.54 E-value=0.008 Score=46.81 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=40.1
Q ss_pred CCeEEEEEeCCCCcChHHHHHh------hhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIG------GTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~------~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~ 100 (156)
.++.+.|+||||...+...... ....++.+++|+|+..+. .......... ..++. -+++||+
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---------~~~~~~~~f~~~l~i~--gvVlnK~ 250 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---------DAANTAKAFNEALPLT--GVVLTKV 250 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---------THHHHHHHHHHHSCCC--CEEEECT
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---------HHHHHHHHHhccCCCe--EEEEecC
Confidence 5788999999997654222221 234678999999997642 2233333222 22333 4589999
Q ss_pred CCC
Q psy10355 101 DDP 103 (156)
Q Consensus 101 Dl~ 103 (156)
|..
T Consensus 251 D~~ 253 (433)
T 2xxa_A 251 DGD 253 (433)
T ss_dssp TSS
T ss_pred CCC
Confidence 964
No 229
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=96.25 E-value=0.0057 Score=43.05 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=45.7
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
..+.+.++|||+... ......+..+|.+++|+.+.... .......+..+...+.+.+-+++|+.+.
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~-------~~~~~~~~~~l~~~~~~~~~vv~N~~~~ 175 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISC-------LTDTMKVGIVLKKAGLAILGFVLNRYGR 175 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHH-------HHHHHHHHHHHHHTTCEEEEEEEEEETS
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCccc-------HHHHHHHHHHHHhCCCceEEEEEecCCc
Confidence 347799999998654 45567778899999999875432 1233444455555566656789999995
No 230
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=96.08 E-value=0.0078 Score=43.11 Aligned_cols=66 Identities=21% Similarity=0.294 Sum_probs=45.3
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
..+.+.|+|||+... ......+..+|.+|+|+.+.... .......+..+...+.+.+-+++|+++.
T Consensus 109 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~-------~~~~~~~~~~l~~~~~~~~~vv~N~~~~ 174 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISS-------ITDGLKTKIVAERLGTKVLGVVVNRITT 174 (263)
T ss_dssp HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHH-------HHHHHHHHHHHHHHTCEEEEEEEEEECT
T ss_pred hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhH-------HHHHHHHHHHHHhcCCCeeEEEEccCCc
Confidence 357899999998654 45666778899999999875422 1233344455555566646689999995
No 231
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.96 E-value=0.023 Score=38.91 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=43.2
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc-----CCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA-----GVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ivv~NK~Dl 102 (156)
+.+.+.++|||+.. ...+...+..+|.+++++.++.. .......+..+... +.+ +.+++|++|.
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~-~~vv~N~~~~ 142 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL--------DFSAAGSVVTVLEAQAYSRKVE-ARFLITRKIE 142 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT--------THHHHHHHHHHHTTSCGGGCCE-EEEEECSBCT
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH--------HHHHHHHHHHHHHHHHhCCCCc-EEEEEeccCC
Confidence 35789999999976 34566777889999999987542 11122333444332 345 6889999994
No 232
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=95.96 E-value=0.02 Score=42.00 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=46.6
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
+.++|+|||+..... ......+.+|.+|+|+.+.... .......+..+...+.+.+-+|+||+|..
T Consensus 202 yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~-------~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 202 YDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNT-------LKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp CSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSB-------HHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCc-------HHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 679999999975432 2344557799999999986543 23444556666777776567899999953
No 233
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.77 E-value=0.012 Score=41.06 Aligned_cols=66 Identities=8% Similarity=0.023 Sum_probs=44.7
Q ss_pred CCeEEEEEeCCCC-cChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc-CCCcEEEEEeCCCCC
Q psy10355 28 DRKHFTILDAPGH-KSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA-GVKHLVVLINKMDDP 103 (156)
Q Consensus 28 ~~~~~~iiDtpG~-~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ivv~NK~Dl~ 103 (156)
..+.+.++|||+. ... .+...+..+|.+|+++.++... .......+..+... +.+ +.+++|++|..
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~-------~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~ 133 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALA-------LDALMLTIETLQKLGNNR-FRILLTIIPPY 133 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHH-------HHHHHHHHHHHHHTCSSS-EEEEECSBCCT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchh-------HHHHHHHHHHHHhccCCC-EEEEEEecCCc
Confidence 4578999999997 433 3456677899999999875432 12333444455542 566 78999999953
No 234
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=95.70 E-value=0.076 Score=37.90 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=41.2
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---cCCCcE-EEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT---AGVKHL-VVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-ivv~NK~Dl 102 (156)
..+.+.++|||+.... .+..++..+|.+|+++.+..... .......+.+..+.. .+.+ + -+++|+.|.
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~----~~~~~~~~~l~~~~~~~~~~~~-~~gvv~N~~~~ 181 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYAL----EGVAGLLATLEEVRAGLNPRLR-LLGILVTMYDG 181 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHH----HHHHHHHHHHHHHHHHTCTTCE-EEEEEEESBCT
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHH----HHHHHHHHHHHHHHHHhCCCce-EEEEEEEeECC
Confidence 5688999999997543 24456678999999998854321 000111222222222 2445 4 379999985
No 235
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.64 E-value=0.019 Score=44.20 Aligned_cols=54 Identities=15% Similarity=0.141 Sum_probs=42.4
Q ss_pred hhcCceeeeeeEEEEeCC-----------------eEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCC
Q psy10355 12 REKGKTVEVGRAYFETDR-----------------KHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~-----------------~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~ 65 (156)
..+++|+++..+.+...+ ..+.+||+||... +.......++.+|++++|+|+..
T Consensus 50 ~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 50 NYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345778888888888765 4689999999643 34467778899999999999864
No 236
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=95.52 E-value=0.048 Score=40.20 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=45.7
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
+.++|+|||+..... ........+|.+|+|+.+.... .......+..+...+.+.+-+|+|++|..
T Consensus 214 yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~-------~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNT-------AKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSC-------TTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCCh-------HHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 679999999975432 2333456799999999886543 24455566666666766344789999953
No 237
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.38 E-value=0.022 Score=40.18 Aligned_cols=66 Identities=12% Similarity=0.098 Sum_probs=44.5
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC--CCcEEEEEeCCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG--VKHLVVLINKMDDP 103 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ivv~NK~Dl~ 103 (156)
.+.+.++|||+.... .....+..+|.+++++.+.... .......+..+...+ ...+-+++|+++..
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQS-------LRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHH-------HHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHH-------HHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 477999999986532 4556678899999999875422 123344445555444 33478899999953
No 238
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=95.35 E-value=0.029 Score=40.80 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=43.9
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
.+.++|+|||+..... ........+|.+|+|+.+.... .......+..+...+.+.+-+|+|++|..
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~-------~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNN-------KDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCC-------HHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCc-------HHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 3679999999965432 2333446789999999986543 23344455556666777333899999953
No 239
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.21 E-value=0.12 Score=38.68 Aligned_cols=94 Identities=15% Similarity=0.174 Sum_probs=54.1
Q ss_pred CeEEEEEeCCCCcCh----HHHHHh--hhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCC
Q psy10355 29 RKHFTILDAPGHKSF----VPNMIG--GTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMD 101 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~----~~~~~~--~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~D 101 (156)
++.+.++||+|.... ...... ..-..|-.++++|+..+ .+....+..+. ..++. ++++||+|
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---------~~~~~~~~~~~~~~~it--~iilTKlD 279 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---------NAIVEQARQFNEAVKID--GIILTKLD 279 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---------THHHHHHHHHHHHSCCC--EEEEECGG
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---------HHHHHHHHHHHHhcCCC--EEEEeCcC
Confidence 456788999997432 222111 11246889999998664 23444444444 34544 67999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 102 DPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..... .. +..+.... +.|+..++ +|++++.|.
T Consensus 280 ~~a~~-G~---------~l~~~~~~------~~pi~~i~--~Ge~v~dl~ 311 (328)
T 3e70_C 280 ADARG-GA---------ALSISYVI------DAPILFVG--VGQGYDDLR 311 (328)
T ss_dssp GCSCC-HH---------HHHHHHHH------TCCEEEEE--CSSSTTCEE
T ss_pred Cccch-hH---------HHHHHHHH------CCCEEEEe--CCCCccccc
Confidence 53221 11 11222333 35777777 888887764
No 240
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.16 E-value=0.18 Score=37.05 Aligned_cols=66 Identities=17% Similarity=0.253 Sum_probs=37.2
Q ss_pred CCeEEEEEeCCCCcCh----HHHHHhh--hhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSF----VPNMIGG--TAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~----~~~~~~~--~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.++.+.++||||.... ....... ...++.+++|+|+..+. +.......... ..+..-+++||+|
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~---------~~~~~~~~~~~-~~~i~givlnk~d 248 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---------EALSVARAFDE-KVGVTGLVLTKLD 248 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTH---------HHHHHHHHHHH-HTCCCEEEEECGG
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcH---------HHHHHHHHHhh-cCCCCEEEEECCC
Confidence 4678999999986432 1111111 12478889999986431 22233332222 1231346899999
Q ss_pred CC
Q psy10355 102 DP 103 (156)
Q Consensus 102 l~ 103 (156)
..
T Consensus 249 ~~ 250 (295)
T 1ls1_A 249 GD 250 (295)
T ss_dssp GC
T ss_pred CC
Confidence 54
No 241
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=95.10 E-value=0.055 Score=38.77 Aligned_cols=65 Identities=8% Similarity=0.160 Sum_probs=43.5
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc--CCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA--GVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivv~NK~Dl 102 (156)
..+.+.++|||+... ..+..++..+|.+|+++.+.... .......+..+... +.+ +.+++|++..
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s-------~~~~~~~~~~l~~~~~~~~-~~vv~N~~~~ 209 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWA-------VESLDLFNFFVRKLNLFLP-IFLIITRFKK 209 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTH-------HHHHHHHHHHHHTTTCCCC-EEEEEEEECT
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHH-------HHHHHHHHHHHHHHhccCC-EEEEEecccC
Confidence 457899999998653 34566677799999999885533 12233344444444 345 6789999953
No 242
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.00 E-value=0.084 Score=40.83 Aligned_cols=107 Identities=14% Similarity=0.077 Sum_probs=59.6
Q ss_pred EEEEEeCCCCcCh---HHHHHh--hhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCc
Q psy10355 31 HFTILDAPGHKSF---VPNMIG--GTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 31 ~~~iiDtpG~~~~---~~~~~~--~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~ 105 (156)
.++++|+||+..- ...... .+...+..++ ++...+. .+...+...+...+.| +++|+||.|+..-
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~--------kqrv~la~aL~~~~~p-~~lV~tkpdlllL 190 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFK--------KNDIDIAKAISMMKKE-FYFVRTKVDSDIT 190 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCC--------HHHHHHHHHHHHTTCE-EEEEECCHHHHHH
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCcc--------HHHHHHHHHHHhcCCC-eEEEEecCccccc
Confidence 6899999997421 111111 2334455554 7765422 4556666777777888 8999999996411
Q ss_pred c-----hhHHHHHHHHHHHHHHH----HHcCCCCCCCCeEEEeec--ccCCCCccC
Q psy10355 106 M-----WSEARYNECKDKILPYL----KKLGFNAAKDLSFMPCSG--ELEKNPLLL 150 (156)
Q Consensus 106 ~-----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~Sa--~~g~gi~~l 150 (156)
+ .+.....++.+.+..+. ...+.. ...+|++|+ +.+.|++.|
T Consensus 191 DEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~---~~~iiliSsh~l~~~~~e~L 243 (413)
T 1tq4_A 191 NEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA---EPPIFLLSNKNVCHYDFPVL 243 (413)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS---SCCEEECCTTCTTSTTHHHH
T ss_pred CcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC---CCcEEEEecCcCCccCHHHH
Confidence 1 11111233344444433 232221 236899999 666667654
No 243
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.98 E-value=0.068 Score=41.50 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=38.7
Q ss_pred CCeEEEEEeCCCCcChH----HHH--HhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFV----PNM--IGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~----~~~--~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.++.+.|+||||..... ... ....-.+|.+++|+|+..+. .....+..... ..+..-+++||+|
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---------~av~~a~~f~~-~l~i~GVIlTKlD 248 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---------EALSVARAFDE-KVGVTGLVLTKLD 248 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---------HHHHHHHHHHH-HTCCCEEEEESGG
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---------HHHHHHHHHHh-cCCceEEEEeCcC
Confidence 56789999999975431 111 11223578999999986542 22333333322 2231356899999
Q ss_pred CC
Q psy10355 102 DP 103 (156)
Q Consensus 102 l~ 103 (156)
..
T Consensus 249 ~~ 250 (425)
T 2ffh_A 249 GD 250 (425)
T ss_dssp GC
T ss_pred Cc
Confidence 53
No 244
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=94.83 E-value=0.029 Score=39.88 Aligned_cols=64 Identities=11% Similarity=0.112 Sum_probs=41.7
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC--------CCcEEEEEeCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG--------VKHLVVLINKM 100 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ivv~NK~ 100 (156)
.+.+.++|||+... ..+...+..+|.+++|+.+.... .......+..+...+ ...+-+++|+.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~ 183 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSS-------VRDSDRILGILASKSRRAENGEEPIKEHLLLTRY 183 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHH-------HHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEE
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhH-------HHHHHHHHHHHHHhccccccccCCcceEEEEecC
Confidence 68899999998644 35667778899999999875422 122223333333222 12367899999
Q ss_pred C
Q psy10355 101 D 101 (156)
Q Consensus 101 D 101 (156)
+
T Consensus 184 ~ 184 (260)
T 3q9l_A 184 N 184 (260)
T ss_dssp C
T ss_pred C
Confidence 8
No 245
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.74 E-value=0.1 Score=37.84 Aligned_cols=62 Identities=19% Similarity=0.168 Sum_probs=41.2
Q ss_pred CCEEEEEEeCC-CCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCC
Q psy10355 54 ADLAVLVISAR-KGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128 (156)
Q Consensus 54 ~d~~ilvvD~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (156)
+.++++++|.. .+. .+.+.+.+..+... .+ +|+++||+|... .......++.+...++..+.
T Consensus 112 al~~lllldep~~gL-------~~lD~~~l~~L~~~-~~-vI~Vi~K~D~lt----~~e~~~~k~~i~~~l~~~~i 174 (270)
T 3sop_A 112 VHCCLYFISPTGHSL-------RPLDLEFMKHLSKV-VN-IIPVIAKADTMT----LEEKSEFKQRVRKELEVNGI 174 (270)
T ss_dssp CCEEEEEECCCSSSC-------CHHHHHHHHHHHTT-SE-EEEEETTGGGSC----HHHHHHHHHHHHHHHHHTTC
T ss_pred eeeeeEEEecCCCcC-------CHHHHHHHHHHHhc-Cc-EEEEEeccccCC----HHHHHHHHHHHHHHHHHcCc
Confidence 57889999965 444 35556666666655 66 899999999764 23345556666655565543
No 246
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.71 E-value=0.065 Score=39.97 Aligned_cols=66 Identities=18% Similarity=0.218 Sum_probs=37.8
Q ss_pred CCeEEEEEeCCCCcChHHHHHh-------hh-----hcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEE
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIG-------GT-----AQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVV 95 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~-------~~-----~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 95 (156)
.++.+.|+||||.......... .+ ..+|.+++|+|+..+. +......... ...+-.=+
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~---------~~l~~~~~~~-~~~~i~Gv 259 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQ---------NGVIQAEEFS-KVADVSGI 259 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTH---------HHHHHHHHHT-TTSCCCEE
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcH---------HHHHHHHHHh-hcCCCcEE
Confidence 5688999999997654221111 11 2378999999996432 2222222222 12331246
Q ss_pred EEeCCCCC
Q psy10355 96 LINKMDDP 103 (156)
Q Consensus 96 v~NK~Dl~ 103 (156)
++||+|..
T Consensus 260 Vltk~d~~ 267 (320)
T 1zu4_A 260 ILTKMDST 267 (320)
T ss_dssp EEECGGGC
T ss_pred EEeCCCCC
Confidence 89999953
No 247
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=94.55 E-value=0.089 Score=38.28 Aligned_cols=66 Identities=11% Similarity=0.119 Sum_probs=40.7
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH------cCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT------AGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ivv~NK~D 101 (156)
+.+.+.|+|||+..... ...++..+|.+|+++.+..... ......+..+.. .+.+.+-+++|+.|
T Consensus 153 ~~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~ 223 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEEEST-------NNIQNYISYLIDLQEQFNPGLDMIGFVPYLVD 223 (298)
T ss_dssp GGCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGGCCH-------HHHHHHHHHHHHHHHHHCTTCEEEEEEEEESC
T ss_pred cCCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcHHHH-------HHHHHHHHHHHHHHHHhCCCCeEEEEEEEEEC
Confidence 34789999999975542 3445567999999998754321 222222222222 24552347999999
Q ss_pred C
Q psy10355 102 D 102 (156)
Q Consensus 102 l 102 (156)
.
T Consensus 224 ~ 224 (298)
T 2oze_A 224 T 224 (298)
T ss_dssp T
T ss_pred C
Confidence 5
No 248
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.22 E-value=0.057 Score=39.57 Aligned_cols=66 Identities=17% Similarity=0.092 Sum_probs=40.4
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivv~NK~D 101 (156)
+.+.+.|+|||+..... .+...+..+|.+|+|+.+.... .......+..+.. .+.+.+-+|+|+++
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s-------~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~ 224 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDS-------IYAMNRIIAAVQAKSKNYKVRLAGCVANRSR 224 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHH-------HHHHHHHHHHHHTTTTTCCCEEEEEEEESCS
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHH-------HHHHHHHHHHHHHhhhcCCCceEEEEEecCC
Confidence 45789999999864422 2345668899999999874421 1222333444443 23442238999999
No 249
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.14 E-value=0.1 Score=38.65 Aligned_cols=65 Identities=23% Similarity=0.304 Sum_probs=37.5
Q ss_pred CCeEEEEEeCCCCcChHHHH-------Hhhh-----hcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEE
Q psy10355 28 DRKHFTILDAPGHKSFVPNM-------IGGT-----AQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLV 94 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~-------~~~~-----~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i 94 (156)
.+..+.++||||........ ...+ ..++.+++|+|+..+ .+......... ..++. -
T Consensus 185 ~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~---------~~~l~~a~~~~~~~~i~--g 253 (306)
T 1vma_A 185 RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG---------QNGLVQAKIFKEAVNVT--G 253 (306)
T ss_dssp TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH---------HHHHHHHHHHHHHSCCC--E
T ss_pred cCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC---------HHHHHHHHHHHhcCCCC--E
Confidence 45779999999964332211 1111 236889999999643 12222222222 33444 5
Q ss_pred EEEeCCCCC
Q psy10355 95 VLINKMDDP 103 (156)
Q Consensus 95 vv~NK~Dl~ 103 (156)
+++||+|..
T Consensus 254 vVlTk~D~~ 262 (306)
T 1vma_A 254 IILTKLDGT 262 (306)
T ss_dssp EEEECGGGC
T ss_pred EEEeCCCCc
Confidence 688999954
No 250
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=93.27 E-value=0.12 Score=39.55 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=40.4
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCC----cEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVK----HLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ivv~NK~D 101 (156)
+.+.++|+|||+... ..+..++..+|.+|+|+.++...+.............+..+...+.+ -++.++|+.+
T Consensus 246 ~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~ 321 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMT 321 (403)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC--
T ss_pred hcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccC
Confidence 457899999998764 44666778999999999774321000000012223344444444432 1456889988
No 251
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=93.08 E-value=0.44 Score=34.52 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=28.1
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISAR 64 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~ 64 (156)
.+.+.|+|||+.. ...+..++..+|.+|+++.+.
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESS
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCC
Confidence 4679999999975 455677888999999999875
No 252
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.76 E-value=2 Score=31.65 Aligned_cols=64 Identities=19% Similarity=0.269 Sum_probs=38.1
Q ss_pred CeEEEEEeCCCCcChHH----HH---H-----hhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEE
Q psy10355 29 RKHFTILDAPGHKSFVP----NM---I-----GGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVV 95 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~----~~---~-----~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv 95 (156)
+..+.++||+|...... .. . ......+.+++++|+..+. +....+..+. ..+.. ++
T Consensus 184 ~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~---------~~~~~~~~~~~~~~~t--~i 252 (304)
T 1rj9_A 184 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ---------NGLEQAKKFHEAVGLT--GV 252 (304)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT---------HHHHHHHHHHHHHCCS--EE
T ss_pred CCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH---------HHHHHHHHHHHHcCCc--EE
Confidence 34578999999643211 11 1 1123467789999987653 3344444443 34655 67
Q ss_pred EEeCCCCC
Q psy10355 96 LINKMDDP 103 (156)
Q Consensus 96 v~NK~Dl~ 103 (156)
++||.|..
T Consensus 253 ivTh~d~~ 260 (304)
T 1rj9_A 253 IVTKLDGT 260 (304)
T ss_dssp EEECTTSS
T ss_pred EEECCccc
Confidence 99999964
No 253
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=92.45 E-value=0.26 Score=39.99 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=39.8
Q ss_pred CeEEEEEeCCCCcC-------------hHHHHHhhhhcC-CEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEE
Q psy10355 29 RKHFTILDAPGHKS-------------FVPNMIGGTAQA-DLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLV 94 (156)
Q Consensus 29 ~~~~~iiDtpG~~~-------------~~~~~~~~~~~~-d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (156)
.-.+.++|.||... .......++... ..+++++++..+.. .......+..+...+.+ .|
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a------~~~~l~la~~v~~~g~r-tI 218 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA------TTEALSMAQEVDPEGDR-TI 218 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT------TCHHHHHHHHHCSSCCS-EE
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc------cHHHHHHHHHHhhcCCc-eE
Confidence 35699999998643 122333334443 45666666654431 12233444544445667 79
Q ss_pred EEEeCCCCCCc
Q psy10355 95 VLINKMDDPTV 105 (156)
Q Consensus 95 vv~NK~Dl~~~ 105 (156)
+|+||.|+...
T Consensus 219 ~VlTK~Dlv~~ 229 (608)
T 3szr_A 219 GILTKPDLVDK 229 (608)
T ss_dssp EEEECGGGSSS
T ss_pred EEecchhhcCc
Confidence 99999997643
No 254
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.92 E-value=0.47 Score=37.63 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=38.7
Q ss_pred CCeEEEEEeCCCCcChHHH-------HHhhhh-----cCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEE
Q psy10355 28 DRKHFTILDAPGHKSFVPN-------MIGGTA-----QADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLV 94 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~-------~~~~~~-----~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i 94 (156)
.++.+.++||+|....... ....++ ..+-++||+|++.+. +....+..+. ..++. .
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq---------~al~~ak~f~~~~~it--g 442 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ---------NAVSQAKLFHEAVGLT--G 442 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH---------HHHHHHHHHHHHTCCS--E
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH---------HHHHHHHHHHhhcCCC--E
Confidence 4567999999997533211 111111 245789999997753 2333333333 34555 5
Q ss_pred EEEeCCCCC
Q psy10355 95 VLINKMDDP 103 (156)
Q Consensus 95 vv~NK~Dl~ 103 (156)
+++||+|-.
T Consensus 443 vIlTKLD~t 451 (503)
T 2yhs_A 443 ITLTKLDGT 451 (503)
T ss_dssp EEEECGGGC
T ss_pred EEEEcCCCc
Confidence 689999953
No 255
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.82 E-value=0.13 Score=37.77 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=36.9
Q ss_pred CCeEEEEEeCCCCcChHHH----HHhhhh--cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPN----MIGGTA--QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~----~~~~~~--~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.+..+.|+||||....... ....+. ..+.+++|+|++.+. .............+.. -+++||+|
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~--------~~~~~~~~~~~~l~~~--giVltk~D 250 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKY--------EDMKHIVKRFSSVPVN--QYIFTKID 250 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH--------HHHHHHTTTTSSSCCC--EEEEECTT
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH--------HHHHHHHHHHhcCCCC--EEEEeCCC
Confidence 5678999999997644221 222222 356789999987642 1112222212122333 45679999
Q ss_pred CC
Q psy10355 102 DP 103 (156)
Q Consensus 102 l~ 103 (156)
..
T Consensus 251 ~~ 252 (296)
T 2px0_A 251 ET 252 (296)
T ss_dssp TC
T ss_pred cc
Confidence 64
No 256
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=90.87 E-value=0.72 Score=31.75 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=37.9
Q ss_pred CCeEEEEEeCCCCcCh--H--HHHHhhhhc-CCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSF--V--PNMIGGTAQ-ADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~--~--~~~~~~~~~-~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
+.+.+.++||||.... . ......... .+.+|+|+.+.... ..+....+..+...+.+-.-+++|++|.
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~-------~~~~~~~i~~l~~~~~~i~gvvlN~~~~ 179 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGC-------INHAMLTAQVIQHAGLTLAGWVANDVTP 179 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTH-------HHHHHHHHHHHHHTTCCEEEEEEECCSS
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCc-------HHHHHHHHHHHHHCCCcEEEEEEeCCCC
Confidence 4578999999976421 0 011111122 23477888774432 1333444455555667633478999994
No 257
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=90.23 E-value=1.5 Score=32.88 Aligned_cols=86 Identities=14% Similarity=0.084 Sum_probs=45.4
Q ss_pred CCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCc--chhHHHHHHHHHHHHHHHHHcCCCCC
Q psy10355 54 ADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTV--MWSEARYNECKDKILPYLKKLGFNAA 131 (156)
Q Consensus 54 ~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (156)
.+.+++|.-+..-. .......+..+...++|..-+|+|++..... .+-.......++.+..+.+..+-.
T Consensus 237 ~~~~vlV~~p~~~~-------~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~-- 307 (349)
T 3ug7_A 237 RTAFRLVVIPEEMS-------ILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDK-- 307 (349)
T ss_dssp TEEEEEEECSSHHH-------HHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTS--
T ss_pred CceEEEEECCCccH-------HHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCC--
Confidence 36788888664322 2445566677778899955789999985321 111111222233344444444321
Q ss_pred CCCeEEEeecccCCCCcc
Q psy10355 132 KDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 132 ~~~~~i~~Sa~~g~gi~~ 149 (156)
..-.+|.....-.|++.
T Consensus 308 -~l~~iPl~~~e~~g~~~ 324 (349)
T 3ug7_A 308 -VIAYVPLLRTEAKGIET 324 (349)
T ss_dssp -EEEEEECCSSCSCSHHH
T ss_pred -cEEEecCCCCCCCCHHH
Confidence 12345665555555443
No 258
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=90.10 E-value=0.41 Score=36.44 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=27.3
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISAR 64 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~ 64 (156)
+.+.++|+|||+.... .+..++..+|.+|+++.+.
T Consensus 243 ~~yD~ViiD~pp~~~~--~~~~~l~~aD~vliv~~p~ 277 (398)
T 3ez2_A 243 SDYDFILVDSGPHLDA--FLKNALASANILFTPLPPA 277 (398)
T ss_dssp TTCSEEEEEECSCCSH--HHHHHHHHCSEEEEEECCS
T ss_pred ccCCEEEEeCCCCccH--HHHHHHHHCCEEEEEecCc
Confidence 4678999999987643 3556677899999999764
No 259
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.15 E-value=0.3 Score=34.75 Aligned_cols=68 Identities=15% Similarity=0.014 Sum_probs=38.2
Q ss_pred CCeEEEEEeCCCCcChHHH-HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPN-MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~-~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivv~NK~Dl 102 (156)
+.+.+.++||||....... .......+|.+++++.+.... .......+..+.. .+.+.+-+++|+.+.
T Consensus 114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s-------~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMA-------LYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHH-------HHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhh-------HHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 3578999999996432111 111224689999999874322 1122223333332 244534679999873
No 260
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=88.64 E-value=0.4 Score=34.67 Aligned_cols=67 Identities=15% Similarity=-0.007 Sum_probs=37.1
Q ss_pred CCeEEEEEeCCCCcChHHH-HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPN-MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~-~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivv~NK~D 101 (156)
+.+.+.|+||||....... .......+|.+++++.+.... .......+..+.. .+.+.+-+++|+.+
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s-------~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~ 188 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMA-------MYAANNISKGIVKYANSGSVRLGGLICNSRN 188 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHH-------HHHHHHHHHHHHHHHTTSCCEEEEEEEECCC
T ss_pred cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHH-------HHHHHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 3578999999986432111 112225689999998774321 0112222232222 24553457899987
No 261
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=85.91 E-value=0.33 Score=39.31 Aligned_cols=16 Identities=19% Similarity=0.304 Sum_probs=13.2
Q ss_pred CCeEEEEEeCCCCcCh
Q psy10355 28 DRKHFTILDAPGHKSF 43 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~ 43 (156)
.+..+.++||||..+.
T Consensus 89 ~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 89 PGHILVLLDTEGLGDV 104 (592)
T ss_dssp TTCEEEEEEECCBCCG
T ss_pred CCceEEEecCCCcCcc
Confidence 5678999999998653
No 262
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=85.58 E-value=4 Score=30.04 Aligned_cols=42 Identities=7% Similarity=-0.027 Sum_probs=28.7
Q ss_pred CEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 55 DLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 55 d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
+.+++|.-+..-. .......+..+...|++..-+|+|++.-.
T Consensus 223 ~~~vlV~~p~~~~-------~~~~~~~~~~l~~~gi~v~gvV~N~~~~~ 264 (324)
T 3zq6_A 223 TSFKMVVIPEEMS-------IYESERAMKALEKYSIHADGVIVNQVLPE 264 (324)
T ss_dssp EEEEEEECSSHHH-------HHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CeEEEEeCCcccH-------HHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 4788887664322 24455666777788999557899999853
No 263
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=84.12 E-value=1.4 Score=35.30 Aligned_cols=43 Identities=14% Similarity=0.035 Sum_probs=28.7
Q ss_pred cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 53 QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 53 ~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
.++.+++|+.+.... .......+..+...|++..-+|+|++.-
T Consensus 489 ~~~~vvlV~~p~~~~-------~~~a~~~~~~l~~~g~~~~gvVvN~~~~ 531 (589)
T 1ihu_A 489 ERTKVLLVTLPETTP-------VLEAANLQADLERAGIHPWGWIINNSLS 531 (589)
T ss_dssp TTEEEEEEECSSHHH-------HHHHHHHHHHHHHTTCCCCEEEEEEEST
T ss_pred CCCEEEEEeCCCccH-------HHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 457888888764322 1334455566667787756789999984
No 264
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=81.55 E-value=1.9 Score=32.39 Aligned_cols=42 Identities=10% Similarity=-0.093 Sum_probs=29.6
Q ss_pred cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 53 QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 53 ~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.++.+++|+.+..-. .......+..+...+++..-+|+|++.
T Consensus 234 ~~~~~vlV~~pe~~s-------i~ea~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 234 DLTTFVCVCISEFLS-------LYETERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp TTEEEEEEEESSHHH-------HHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred CCcEEEEEeCCCcch-------HHHHHHHHHHHHHcCCCCCEEEEecCC
Confidence 568889998874322 134555666677778885678999998
No 265
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=78.12 E-value=5.4 Score=26.65 Aligned_cols=41 Identities=7% Similarity=0.090 Sum_probs=30.7
Q ss_pred HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEE
Q psy10355 47 MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVL 96 (156)
Q Consensus 47 ~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv 96 (156)
=...++.||++|.++|.... ...+...+-++...|+| ++++
T Consensus 75 D~~~i~~aD~vVA~ldg~~~--------D~GTa~EiGyA~algKP-Vv~l 115 (167)
T 1s2d_A 75 DLTGISNATCGVFLYDMDQL--------DDGSAFXIGFMRAMHKP-VILV 115 (167)
T ss_dssp HHHHHHHCSEEEEEEESSSC--------CHHHHHHHHHHHHTTCC-EEEE
T ss_pred HHHHHHhCCEEEEECCCCCC--------CCCceeehhhHhhCCCe-EEEE
Confidence 34457899999999997543 35667777888889999 6655
No 266
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=77.68 E-value=1 Score=32.77 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=13.6
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcC
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKS 42 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~ 42 (156)
...+|+|.+.....+ +..+.++||||...
T Consensus 149 ~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 149 GDRPGITTSQQWVKV---GKELELLDTPGILW 177 (282)
T ss_dssp ----------CCEEE---TTTEEEEECCCCCC
T ss_pred CCCCCeeeeeEEEEe---CCCEEEEECcCcCC
Confidence 345678877764433 45799999999853
No 267
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=76.96 E-value=13 Score=27.86 Aligned_cols=42 Identities=7% Similarity=-0.122 Sum_probs=27.9
Q ss_pred CEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 55 DLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 55 d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
..+++|.-+..-. .......+..+...|++..-+|+|++.-.
T Consensus 232 t~~vlVt~pe~~~-------~~ea~r~~~~L~~~gi~v~gvVvN~~~~~ 273 (348)
T 3io3_A 232 TTFICVCISEFLS-------LYETERMIQELMSYNMDVNSIVVNQLLFA 273 (348)
T ss_dssp EEEEEEEESSHHH-------HHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred eEEEEEecCCccH-------HHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 4677777664322 23445566777778888667899999853
No 268
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=73.24 E-value=5.3 Score=26.60 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=32.0
Q ss_pred HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEe
Q psy10355 45 PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLIN 98 (156)
Q Consensus 45 ~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~N 98 (156)
..=...++.||++|.++|.... ...+...+.++...|+| ++++.+
T Consensus 61 ~~D~~~i~~aD~viA~ldg~~~--------D~Gt~~EiG~A~a~gkP-Vi~~~~ 105 (162)
T 3ehd_A 61 LADTENVLASDLLVALLDGPTI--------DAGVASEIGVAYAKGIP-VVALYT 105 (162)
T ss_dssp HHHHHHHHTCSEEEEECCSSSC--------CHHHHHHHHHHHHTTCC-EEEECC
T ss_pred HHHHHHHHHCCEEEEECCCCCC--------CCCHHHHHHHHHHCCCE-EEEEEc
Confidence 3445567899999999986532 24566677888889999 665544
No 269
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=72.32 E-value=4.2 Score=26.91 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=31.6
Q ss_pred HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeC
Q psy10355 47 MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINK 99 (156)
Q Consensus 47 ~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK 99 (156)
=...++.||++|.++|.... ...+...+-++...|+| ++++..+
T Consensus 72 D~~~i~~aD~vvA~ldg~~~--------D~GT~~EiGyA~A~gkP-Vv~~~~~ 115 (157)
T 1f8y_A 72 DLNGIKTNDIMLGVYIPDEE--------DVGLGMELGYALSQGKY-VLLVIPD 115 (157)
T ss_dssp HHHHHHTSSEEEEECCGGGC--------CHHHHHHHHHHHHTTCE-EEEEECG
T ss_pred hHHHHHhCCEEEEEcCCCCC--------CccHHHHHHHHHHCCCe-EEEEEcC
Confidence 34556889999999986432 25666777888889999 6665543
No 270
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=71.18 E-value=4.4 Score=30.34 Aligned_cols=34 Identities=15% Similarity=0.003 Sum_probs=26.7
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISAR 64 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~ 64 (156)
.+.++|+|||.... .....++..+|.+|+++.+.
T Consensus 153 ~yD~VIID~pP~l~--~~~~~aL~~aD~viip~~~~ 186 (361)
T 3pg5_A 153 RYDVIFFDVGPSLG--PFNRTVLLGCDAFVTPTATD 186 (361)
T ss_dssp CCSEEEEECCSCCS--HHHHHHHTTCSEEEEEECCS
T ss_pred CCCEEEEECCCCcC--HHHHHHHHHCCEEEEEecCC
Confidence 68899999997643 44556667799999999874
No 271
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=70.07 E-value=9.2 Score=26.66 Aligned_cols=68 Identities=13% Similarity=0.007 Sum_probs=39.3
Q ss_pred CCeEEEEEeCCCCcC-----hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKS-----FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~-----~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
..+.+.++|+||... .......+.....-+|+|+++..+.. ......+..+...+.+-.=+++|+++-
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i-------~~~~~~~~~l~~~~~~i~GvIlN~~~~ 181 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCI-------NHTLLTINELNRHNIKLAGWIANCNDS 181 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHH-------HHHHHHHHHHHHTTCCEEEEEEEECCT
T ss_pred ccCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchH-------HHHHHHHHHHHhCCCcEEEEEEECcCC
Confidence 457899999987421 11111111122245788999876541 333444455556777734579999983
No 272
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=69.90 E-value=24 Score=26.52 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=36.7
Q ss_pred eEEEEEeCCCCcChHHH--------HH----hhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEE
Q psy10355 30 KHFTILDAPGHKSFVPN--------MI----GGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVL 96 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~--------~~----~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv 96 (156)
....++||+|....... .. ......+-+++|+|++.+. +.......+. ..++. +++
T Consensus 241 ~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttgl---------D~~~~~~~~~~~~g~t--~ii 309 (359)
T 2og2_A 241 YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGL---------NMLPQAREFNEVVGIT--GLI 309 (359)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGG---------GGHHHHHHHHHHTCCC--EEE
T ss_pred CHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCC---------CHHHHHHHHHHhcCCe--EEE
Confidence 44678999997543111 11 1113456779999987654 2222333333 34655 678
Q ss_pred EeCCCCC
Q psy10355 97 INKMDDP 103 (156)
Q Consensus 97 ~NK~Dl~ 103 (156)
++|.|-.
T Consensus 310 iThlD~~ 316 (359)
T 2og2_A 310 LTKLDGS 316 (359)
T ss_dssp EESCTTC
T ss_pred EecCccc
Confidence 9999954
No 273
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=68.51 E-value=4.5 Score=30.40 Aligned_cols=36 Identities=17% Similarity=0.057 Sum_probs=26.6
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~ 65 (156)
..+.+.++|||.... ..+...+..+|.+++|+.+..
T Consensus 258 ~~yD~VIID~p~~~~--~~~~~~l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 258 DNYDEIIVDLPFSLE--IEKLKLLSKAWRIIVVNDGSQ 293 (373)
T ss_dssp SCCSEEEEECCCCCC--HHHHHHHTTCSEEEEEECCCH
T ss_pred CCCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEecCCc
Confidence 467899999995432 355667788999999987643
No 274
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=68.05 E-value=6.2 Score=26.22 Aligned_cols=48 Identities=13% Similarity=0.029 Sum_probs=32.8
Q ss_pred HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeC
Q psy10355 46 NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINK 99 (156)
Q Consensus 46 ~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK 99 (156)
.-...++.||++|.++|+-.|.. ....+...+.++...|+| ++++.+.
T Consensus 60 ~d~~~i~~aD~vVA~ldpf~g~~-----~D~GTafEiGyA~AlgKP-Vi~l~~d 107 (161)
T 2f62_A 60 KNIQMIKDCDAVIADLSPFRGHE-----PDCGTAFEVGCAAALNKM-VLTFTSD 107 (161)
T ss_dssp HHHHHHHHCSEEEEECCCCSSSS-----CCHHHHHHHHHHHHTTCE-EEEECSC
T ss_pred HHHHHHHhCCEEEEEecCCCCCC-----CCCcHHHHHHHHHHCCCE-EEEEEcC
Confidence 34677899999999999533320 134556667788888999 6766553
No 275
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=67.34 E-value=25 Score=25.60 Aligned_cols=63 Identities=14% Similarity=0.187 Sum_probs=36.5
Q ss_pred eEEEEEeCCCCcChHHH-------HHh-----hhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEE
Q psy10355 30 KHFTILDAPGHKSFVPN-------MIG-----GTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVL 96 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~-------~~~-----~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv 96 (156)
....++||+|....... ... .....+-+++++|++.+. +....+..+. ..++. +++
T Consensus 184 ~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsgl---------D~~~~~~~~~~~~g~t--~ii 252 (302)
T 3b9q_A 184 YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGL---------NMLPQAREFNEVVGIT--GLI 252 (302)
T ss_dssp CSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGG---------GGHHHHHHHHHHTCCC--EEE
T ss_pred CcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCc---------CHHHHHHHHHHhcCCC--EEE
Confidence 44678999997543211 111 112456679999987664 1223333333 34655 668
Q ss_pred EeCCCCC
Q psy10355 97 INKMDDP 103 (156)
Q Consensus 97 ~NK~Dl~ 103 (156)
++|+|-.
T Consensus 253 iThlD~~ 259 (302)
T 3b9q_A 253 LTKLDGS 259 (302)
T ss_dssp EECCSSC
T ss_pred EeCCCCC
Confidence 9999954
No 276
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=65.60 E-value=38 Score=25.02 Aligned_cols=41 Identities=12% Similarity=-0.038 Sum_probs=27.1
Q ss_pred CEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 55 DLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 55 d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
..+++|.-+..-. .......+..+...|++..-+|+|++-.
T Consensus 223 t~~vlVt~pe~~~-------~~ea~r~~~~L~~~gi~v~gvVvN~~~~ 263 (334)
T 3iqw_A 223 TTFVCVCIPEFLS-------LYETERMIQELANYGIDTHCIVVNQLLF 263 (334)
T ss_dssp EEEEEEECSSHHH-------HHHHHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred eeEEEEECCCccH-------HHHHHHHHHHHHHCCCCccEEEECCCcC
Confidence 3677777553322 2344566677778899866789999874
No 277
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=64.28 E-value=18 Score=25.47 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=41.2
Q ss_pred CCeEEEEEeCCCCcC-----hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKS-----FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~-----~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
..+.+.++|.||... .......+.....-+|+|+++..+. .......+..+...+++ .=+++|+++-
T Consensus 130 ~~~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~~lg~-------i~~~~lt~~~l~~~g~~-~GvIlN~v~~ 201 (242)
T 3qxc_A 130 KTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGL-------INDCLLNDFLLKSHQLD-YKIAINLKGN 201 (242)
T ss_dssp GTCSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECCSTTH-------HHHHHHHHHHHHTSSSC-EEEEECCCTT
T ss_pred hcCCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcCCCcH-------HHHHHHHHHHHHhCCCC-EEEEEeCCCC
Confidence 456799999987421 1111111112223578999987654 23444455566667888 8899999983
No 278
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=63.26 E-value=9.2 Score=30.56 Aligned_cols=41 Identities=20% Similarity=0.170 Sum_probs=27.4
Q ss_pred CEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 55 DLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 55 d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
+.+++|+.+.... .......+..+...+++..-+|+|++.-
T Consensus 199 t~vvlV~~~~~~~-------~~~~~~~~~~L~~~g~~~~gvVlN~v~~ 239 (589)
T 1ihu_A 199 TRLVLVARLQKST-------LQEVARTHLELAAIGLKNQYLVINGVLP 239 (589)
T ss_dssp EEEEEEEESCHHH-------HHHHHHHHHHHHHHTCCCEEEEEEEECC
T ss_pred cEEEEEeCCCccH-------HHHHHHHHHHHHhCCCCCCEEEEcCCcC
Confidence 3688888875432 2344555666667777756678999984
No 279
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=58.81 E-value=18 Score=23.81 Aligned_cols=45 Identities=16% Similarity=0.071 Sum_probs=32.4
Q ss_pred HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 46 NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 46 ~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.-...++.||++|..+|. . .......+-++...|+| ++++.++.+
T Consensus 70 ~d~~~i~~aD~vva~~~~---~-------d~Gt~~EiGyA~algKP-Vi~l~~~~~ 114 (165)
T 2khz_A 70 QDLNWLQQADVVVAEVTQ---P-------SLGVGYELGRAVALGKP-ILCLFRPQS 114 (165)
T ss_dssp HHHHHHHHCSEEEEECSS---C-------CHHHHHHHHHHHHTCSS-EEEEECTTT
T ss_pred HHHHHHHhCCEEEEECCC---C-------CCCHHHHHHHHHHCCCE-EEEEEcCCC
Confidence 345678999999998872 1 24566667788889999 777766653
No 280
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=57.25 E-value=19 Score=23.66 Aligned_cols=44 Identities=16% Similarity=0.065 Sum_probs=30.9
Q ss_pred HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEe
Q psy10355 44 VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLIN 98 (156)
Q Consensus 44 ~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~N 98 (156)
...-...++.||++|..+|.. ...+...+.++...|+| ++++.+
T Consensus 59 ~~~d~~~i~~aD~vvA~l~~~----------d~Gt~~EiG~A~algkP-V~~l~~ 102 (152)
T 4fyk_A 59 HEQNLNWLQQADVVVAEVTQP----------SLGVGYELGRAVALGKP-ILCLFR 102 (152)
T ss_dssp HHHHHHHHHHCSEEEEECSSC----------CHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred HHHHHHHHHHCCEEEEeCCCC----------CCCHHHHHHHHHHcCCe-EEEEEe
Confidence 344566678999999988732 24566677788888999 665555
No 281
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=55.87 E-value=25 Score=25.81 Aligned_cols=41 Identities=10% Similarity=-0.093 Sum_probs=27.4
Q ss_pred CEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 55 DLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 55 d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
+.+++|..+.... .......+..+...|++..-+|+|++.-
T Consensus 222 t~~vlV~~pe~~~-------i~ea~~~~~~L~~~gi~v~gvVvN~~~~ 262 (329)
T 2woo_A 222 TTFVCVCISEFLS-------LYETERMIQELTSYEIDTHNIVVNQLLL 262 (329)
T ss_dssp EEEEEEEESSHHH-------HHHHHHHHHHHHHHTCEEEEEEEEEECC
T ss_pred eEEEEEeCCCcch-------HHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 4678888764322 2344556677777788855679999983
No 282
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=54.81 E-value=6.1 Score=30.03 Aligned_cols=43 Identities=19% Similarity=0.101 Sum_probs=27.0
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..| .++++||+|... .++ +... . ....++++|+..+.|++.|.
T Consensus 249 ~~p-~i~v~nKid~~~-------~ee----le~l-~-------~~~~~~~is~~~e~gLd~Li 291 (376)
T 4a9a_A 249 YMP-AIYVLNKIDSLS-------IEE----LELL-Y-------RIPNAVPISSGQDWNLDELL 291 (376)
T ss_dssp EEC-EEEEEECGGGSC-------HHH----HHHH-T-------TSTTEEECCTTTCTTHHHHH
T ss_pred ccc-eEEEEecccccC-------HHH----HHHH-h-------cccchhhhhhhhcccchhHH
Confidence 457 789999999652 111 1111 0 12357889999998887653
No 283
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=54.41 E-value=35 Score=24.19 Aligned_cols=67 Identities=16% Similarity=0.117 Sum_probs=39.0
Q ss_pred CCeEEEEEeCCCCcC-----h-HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKS-----F-VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~-----~-~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.++.+.++|.||-.. . ......+.....-+|+|+|+..+.. ......+..+...+.+-.=+++||+.
T Consensus 125 ~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i-------~~~~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 125 RPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTL-------NHTKLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp CTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHH-------HHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred hcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccH-------HHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 346799999997421 1 1112222223456889999876541 33334445555667773456899984
No 284
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=45.73 E-value=82 Score=26.67 Aligned_cols=54 Identities=22% Similarity=0.138 Sum_probs=32.1
Q ss_pred HHHHHhhhhcCCEEEEEEeCCCCcc-----ccccCCCcchHHHHHHHHHcCCCcEEEEEe
Q psy10355 44 VPNMIGGTAQADLAVLVISARKGEF-----ETGFDRGGQTREHAMLAKTAGVKHLVVLIN 98 (156)
Q Consensus 44 ~~~~~~~~~~~d~~ilvvD~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ivv~N 98 (156)
........+.+|++|+|+..+.... ...+.--..-.+.+..+...+.| .|+|++
T Consensus 564 ~~~Av~~A~~ADvvVv~vG~~~~~e~Eg~DR~~l~LP~~Q~~LI~aV~a~~~~-tVVVl~ 622 (845)
T 3abz_A 564 IRNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPN-TVIVNQ 622 (845)
T ss_dssp HHHHHHHHHTSSEEEEEEECCTTTSBTTBCCSSSCCCTTHHHHHHHHHHHCSC-EEEEEE
T ss_pred HHHHHHHHhcCCEEEEEEecCCccccccCCcccccCCHHHHHHHHHHHHhCCC-EEEEEe
Confidence 3445566789999999996543211 11222222334566677777877 676666
No 285
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=40.96 E-value=32 Score=19.73 Aligned_cols=48 Identities=8% Similarity=0.153 Sum_probs=30.2
Q ss_pred HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH-HHHHHcCCCcEEEEEeCCC
Q psy10355 44 VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA-MLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 44 ~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ivv~NK~D 101 (156)
.+.+..+++.-.+-++++..+-. +.....+ ......++| ++.+-+|.+
T Consensus 16 ~~~v~kai~~gkaklViiA~D~~---------~~~~~~i~~lc~~~~Ip-~~~v~sk~e 64 (82)
T 3v7e_A 16 TKQTVKALKRGSVKEVVVAKDAD---------PILTSSVVSLAEDQGIS-VSMVESMKK 64 (82)
T ss_dssp HHHHHHHHTTTCEEEEEEETTSC---------HHHHHHHHHHHHHHTCC-EEEESCHHH
T ss_pred HHHHHHHHHcCCeeEEEEeCCCC---------HHHHHHHHHHHHHcCCC-EEEECCHHH
Confidence 45677788777777777765432 3344444 445567899 676666655
No 286
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=37.07 E-value=24 Score=21.78 Aligned_cols=38 Identities=11% Similarity=0.136 Sum_probs=24.5
Q ss_pred hhhhcCCEEEEEEeCCCCccccccCCCcchH-HHHHHHHHcCCCcEEE
Q psy10355 49 GGTAQADLAVLVISARKGEFETGFDRGGQTR-EHAMLAKTAGVKHLVV 95 (156)
Q Consensus 49 ~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iv 95 (156)
..++.++++|++++....- ..+. ..+..+...|+| ++.
T Consensus 34 ~~I~~~~~vIvL~G~~t~~--------s~wv~~EI~~A~~~gkp-Iig 72 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTR--------RDEILGAVDLARKSSKP-IIT 72 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTS--------HHHHHHHHHHHTTTTCC-EEE
T ss_pred CccccCCEEEEEeCCCcCC--------ChHHHHHHHHHHHcCCC-EEE
Confidence 5567899999888765422 3333 345666677888 443
No 287
>4a1x_C CP5-46-A peptide; hydrolase-peptide complex, unmodified inhibitory peptides; 1.90A {Synthetic construct} PDB: 4a1t_C
Probab=36.57 E-value=25 Score=15.12 Aligned_cols=13 Identities=31% Similarity=0.577 Sum_probs=9.9
Q ss_pred CeEEEEEeCCCCc
Q psy10355 29 RKHFTILDAPGHK 41 (156)
Q Consensus 29 ~~~~~iiDtpG~~ 41 (156)
++.+.++|-||+.
T Consensus 4 grlvylldgpgyd 16 (26)
T 4a1x_C 4 GRLVYLLDGPGYD 16 (26)
T ss_pred ceEEEEecCCCCC
Confidence 4567888999974
No 288
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A*
Probab=35.32 E-value=1.2e+02 Score=25.04 Aligned_cols=54 Identities=17% Similarity=0.226 Sum_probs=31.0
Q ss_pred HHHHHhhhhcCCEEEEEEeCCCCcc----------ccccCCCcchHHHHHHHHHcCCCcEEEEEe
Q psy10355 44 VPNMIGGTAQADLAVLVISARKGEF----------ETGFDRGGQTREHAMLAKTAGVKHLVVLIN 98 (156)
Q Consensus 44 ~~~~~~~~~~~d~~ilvvD~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ivv~N 98 (156)
........+.+|++|+++....+.- ...+.--..-.+.+..+...+.| +|+|++
T Consensus 418 ~~~a~~~A~~aDv~Iv~vg~~~gEg~~~~~g~~gDR~~l~Lp~~Q~~Li~~v~~~~~~-~VVVl~ 481 (713)
T 3zyz_A 418 TSSGASAARGKDVAIVFITADSGEGYITVEGNAGDRNNLDPWHNGNALVQAVAGANSN-VIVVVH 481 (713)
T ss_dssp HHHHHHHHTTCSEEEEEEEECCBCTTCCBTTBCSSCSCSSCSTTHHHHHHHHHHHCSC-EEEEEE
T ss_pred HHHHHHHhhcCCEEEEEecccCCCCccccccCCCCcccccCChhHHHHHHHHHHhCCC-eEEEEe
Confidence 3455666788999999996543210 11122112224566667777777 666665
No 289
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.25 E-value=70 Score=18.88 Aligned_cols=49 Identities=6% Similarity=0.111 Sum_probs=28.7
Q ss_pred HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH-HHHHHcCCCcEEEE-EeCCCC
Q psy10355 44 VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA-MLAKTAGVKHLVVL-INKMDD 102 (156)
Q Consensus 44 ~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ivv-~NK~Dl 102 (156)
.+.+..+++.-.+-++++..+.+ ......+ ......++| ++.+ .+|.+|
T Consensus 20 ~~~v~kai~~gka~lViiA~D~~---------~~~~~~i~~~c~~~~ip-~~~~~~s~~eL 70 (99)
T 3j21_Z 20 SNETIRLAKTGGAKLIIVAKNAP---------KEIKDDIYYYAKLSDIP-VYEFEGTSVEL 70 (99)
T ss_dssp HHHHHHHHHHTCCSEEEEECCCC---------HHHHHHHHHHHHHTTCC-EEEECCCSCGG
T ss_pred HHHHHHHHHcCCccEEEEeCCCC---------HHHHHHHHHHHHHcCCC-EEEeCCCHHHH
Confidence 34566677665555555544322 3344444 445567899 6555 888886
No 290
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=34.71 E-value=72 Score=21.72 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=31.3
Q ss_pred EeCCCCcChH-HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEE
Q psy10355 35 LDAPGHKSFV-PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLI 97 (156)
Q Consensus 35 iDtpG~~~~~-~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~ 97 (156)
.|+...+... .....-+++++.+|+++...... ..-....+..+. ..++| +|+|-
T Consensus 60 rDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~-------s~~v~wEIe~Ai~~~~~P-II~Vy 116 (189)
T 3hyn_A 60 RDGSDWEKTLKPRLHTRLDNSKNIILFLSSITAN-------SRALREEMNYGIGTKGLP-VIVIY 116 (189)
T ss_dssp TSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCC-------CHHHHHHHHHHTTTTCCC-EEEEE
T ss_pred cccccHHHHHHHHHHHHHHhcCcEEEEEecCccc-------cchhHHHHHHHHHhcCCc-EEEEE
Confidence 4444434443 34555568889888888764432 122234556666 67889 55443
No 291
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=32.90 E-value=1.5e+02 Score=23.68 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=20.2
Q ss_pred chHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 77 QTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 77 ~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
+...++..+...|+| +|+++|+...
T Consensus 348 NL~kHIen~~~fGvp-vVVaiN~F~t 372 (543)
T 3do6_A 348 NLRVHVENLRKFNLP-VVVALNRFST 372 (543)
T ss_dssp HHHHHHHHHHHTTCC-EEEEEECCTT
T ss_pred HHHHHHHHHHHcCCC-eEEEEeCCCC
Confidence 345677888889999 8999999874
No 292
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=31.75 E-value=1.1e+02 Score=22.06 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=34.2
Q ss_pred CeEEEEEeCCCCcCh-HHHHHhhhh---cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 29 RKHFTILDAPGHKSF-VPNMIGGTA---QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~-~~~~~~~~~---~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
++.+.+.++.+.... .......+. ++|++|++- .. ......+..+...++| +|++-+..+
T Consensus 34 g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~--~~----------~~~~~~~~~~~~~giP-vV~~~~~~~ 97 (350)
T 3h75_A 34 GLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN--EQ----------YVAPQILRLSQGSGIK-LFIVNSPLT 97 (350)
T ss_dssp TCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC--CS----------SHHHHHHHHHTTSCCE-EEEEESCCC
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC--ch----------hhHHHHHHHHHhCCCc-EEEEcCCCC
Confidence 456667776654332 223333443 789988752 11 2234455666677899 776666554
No 293
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=31.65 E-value=1.3e+02 Score=20.75 Aligned_cols=65 Identities=3% Similarity=-0.003 Sum_probs=32.6
Q ss_pred CCeEEEEEeCCCCcChHHHHHhh--hhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGG--TAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~--~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.++.+.+.++.+...-....... -+++|++|+.- ..... .......+..+...++| +|++-+..+
T Consensus 44 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~-~~~~~-------~~~~~~~~~~~~~~~iP-vV~~~~~~~ 110 (298)
T 3tb6_A 44 QGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEP-TKSAL-------QTPNIGYYLNLEKNGIP-FAMINASYA 110 (298)
T ss_dssp TTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECC-SSTTS-------CCTTHHHHHHHHHTTCC-EEEESSCCT
T ss_pred CCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEec-ccccc-------cCCcHHHHHHHHhcCCC-EEEEecCcC
Confidence 35677777776543322222222 25678876642 21111 01234455666677888 665544443
No 294
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=31.11 E-value=32 Score=20.57 Aligned_cols=49 Identities=8% Similarity=-0.012 Sum_probs=27.4
Q ss_pred HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH-HHHHHcCCCcEEEEEeCCCC
Q psy10355 44 VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA-MLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 44 ~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ivv~NK~Dl 102 (156)
...+..+++.-.+-++++..+.. +.....+ ..+...++| ++.+.+|.+|
T Consensus 24 ~~~v~kai~~gka~lViiA~D~~---------~~~~~~i~~~c~~~~vp-~~~~~s~~eL 73 (101)
T 3v7q_A 24 EDLVIKEIRNARAKLVLLTEDAS---------SNTAKKVTDKCNYYKVP-YKKVESRAVL 73 (101)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSC---------HHHHHHHHHHHHHTTCC-EEEESCHHHH
T ss_pred hhhhHHHHhcCceeEEEEecccc---------ccchhhhcccccccCCC-eeeechHHHH
Confidence 34566667665655555544332 2334333 445567899 6777666553
No 295
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=29.84 E-value=35 Score=20.36 Aligned_cols=49 Identities=10% Similarity=0.154 Sum_probs=27.0
Q ss_pred HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH-HHHHHcCCCcEEEEEeCCCC
Q psy10355 44 VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA-MLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 44 ~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ivv~NK~Dl 102 (156)
...+..+++.-.+-++++..+.. +.....+ ......++| ++.+.+|.+|
T Consensus 23 ~~~v~kai~~gka~lViiA~D~~---------~~~~~~i~~~c~~~~ip-~~~~~s~~eL 72 (101)
T 3on1_A 23 EEQVVKAVQNGQVTLVILSSDAG---------IHTKKKLLDKCGSYQIP-VKVVGNRQML 72 (101)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSC---------HHHHHHHHHHHHHHTCC-EEEESCHHHH
T ss_pred HHHHHHHHHcCCCcEEEEeCCCC---------HHHHHHHHHHHHHcCCC-EEEeCCHHHH
Confidence 34566677665655555544332 2233333 445567899 6766665553
No 296
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=28.08 E-value=51 Score=20.24 Aligned_cols=49 Identities=8% Similarity=0.028 Sum_probs=29.3
Q ss_pred HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH-HHHHHcCCCcEEEE-EeCCCC
Q psy10355 44 VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA-MLAKTAGVKHLVVL-INKMDD 102 (156)
Q Consensus 44 ~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ivv-~NK~Dl 102 (156)
.+.+..+++...+-++++..+-. +.....+ ..+...++| ++.+ .+|.+|
T Consensus 31 ~~~t~kai~~gkakLVilA~D~~---------~~~~~~i~~~c~~~~ip-v~~~~~s~~eL 81 (112)
T 3iz5_f 31 YKTVLKTLRSSLGKLIILANNCP---------PLRKSEIETYAMLAKIS-VHHFHGNNVDL 81 (112)
T ss_dssp HHHHHHHHHTTCCSEEEECSCCC---------HHHHHHHHHHHHHTTCC-EECCCCTTCTH
T ss_pred HHHHHHHHHcCCceEEEEeCCCC---------HHHHHHHHHHHHHcCCc-EEEeCCCHHHH
Confidence 45677777766665666644332 2334333 455567889 7767 788874
No 297
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=27.77 E-value=81 Score=24.48 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCcChHH-----HHHhhhh--cCCEEEEEEe
Q psy10355 30 KHFTILDAPGHKSFVP-----NMIGGTA--QADLAVLVIS 62 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~-----~~~~~~~--~~d~~ilvvD 62 (156)
..+.++||||..+-.. ..+.++. -++..|+-+.
T Consensus 140 ~~vvllDTeG~~~~~~~~~~d~~ifal~~lLSs~~IyN~~ 179 (447)
T 3q5d_A 140 VAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLS 179 (447)
T ss_dssp EEEEEEEEECCCSSHHHHHHHHHHHHHHHHHCSEEEEEES
T ss_pred ceEEEEcCCcccccccchhhhHHHHHHHHHHhhHHHHhhc
Confidence 6799999999865432 2233332 3666555553
No 298
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=27.72 E-value=63 Score=20.52 Aligned_cols=49 Identities=8% Similarity=0.076 Sum_probs=28.2
Q ss_pred HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH-HHHHHHHHcCCCcEEEEEeCCC
Q psy10355 44 VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR-EHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 44 ~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.+.+..+++...+-++++..+... .... .+...+...++| ++.+.+|.+
T Consensus 37 ~~~v~kai~~gkakLViiA~D~~p--------~~~~~~l~~lc~~~~VP-~~~v~sk~e 86 (134)
T 2ale_A 37 ANEATKTLNRGISEFIIMAADCEP--------IEILLHLPLLCEDKNVP-YVFVPSRVA 86 (134)
T ss_dssp HHHHHHHHHHTCEEEEEEETTCSS--------GGGGTHHHHHHHHHTCC-EEEESCHHH
T ss_pred chHHHHHHHhCCCeEEEEeCCCCH--------HHHHHHHHHHHHhcCCC-EEEECCHHH
Confidence 456777777777777777554432 1222 333445566888 566655544
No 299
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=23.51 E-value=1.4e+02 Score=18.46 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=29.1
Q ss_pred HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH-HHHHHHHHcCCCcEEEEEeCCC
Q psy10355 44 VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR-EHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 44 ~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ivv~NK~D 101 (156)
+.....-+.+.|++++|.. +. ..|. ..+..+...|+. ++++.|..|
T Consensus 68 ireiwerypqldvvvivtt--dd---------kewikdfieeakergve-vfvvynnkd 114 (162)
T 2l82_A 68 IREIWERYPQLDVVVIVTT--DD---------KEWIKDFIEEAKERGVE-VFVVYNNKD 114 (162)
T ss_dssp HHHHHHHCTTCCEEEEEEC--CC---------HHHHHHHHHHHHHTTCE-EEEEEECSC
T ss_pred HHHHHHhCCCCcEEEEEec--Cc---------HHHHHHHHHHHHhcCcE-EEEEecCCC
Confidence 3344555678898877753 22 2344 455667778888 677777666
No 300
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=22.95 E-value=2.4e+02 Score=23.26 Aligned_cols=53 Identities=26% Similarity=0.323 Sum_probs=29.6
Q ss_pred HHHHhhhhcCCEEEEEEeCCCCcc--cc----ccCCCcchHHHHHHHH----HcCCCcEEEEEe
Q psy10355 45 PNMIGGTAQADLAVLVISARKGEF--ET----GFDRGGQTREHAMLAK----TAGVKHLVVLIN 98 (156)
Q Consensus 45 ~~~~~~~~~~d~~ilvvD~~~~~~--~~----~~~~~~~~~~~~~~~~----~~~~~~~ivv~N 98 (156)
.......+.+|++|+++....+.- .. .+.....-.+.+..+. ..+.| +|+|++
T Consensus 436 ~~a~~~a~~aDvvIv~vg~~~gEg~Dr~~~~~~l~Lp~~q~~LI~~v~~~~~~~~~~-vVVVl~ 498 (721)
T 2x41_A 436 KEIHKLAKKNDVAVIVISRISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKK-VIVLLN 498 (721)
T ss_dssp HHHHHHHHHCSEEEEEEECCCBTTCCCCSSBTTTBCCHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred HHHHHHHhcCCEEEEEEeccccccccccCCCCCccCCHHHHHHHHHHHHHHHHhCCC-EEEEEe
Confidence 455667789999999997643210 01 1211122234555555 56777 676664
No 301
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=22.18 E-value=1.1e+02 Score=19.34 Aligned_cols=49 Identities=6% Similarity=0.083 Sum_probs=27.3
Q ss_pred HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcch-HHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 44 VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQT-REHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 44 ~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
...+..+++...+-++++..+... ... ..+...+...++| ++.+.+|.+
T Consensus 46 ~~~v~kal~~gkaklViiA~D~~~--------~~~~~~l~~lc~~~~IP-~~~v~sk~e 95 (135)
T 2aif_A 46 ANEATKALNRGIAEIVLLAADAEP--------LEILLHLPLVCEDKNTP-YVFVRSKVA 95 (135)
T ss_dssp HHHHHHHHHTTCEEEEEEETTCSC--------HHHHHHHHHHHHHTTCC-EEEESCHHH
T ss_pred HHHHHHHHHcCCCeEEEEecCCCh--------HHHHhHHHHHHHhcCCc-EEEECCHHH
Confidence 345666677667767776554322 122 3333445556888 676655544
No 302
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=21.96 E-value=95 Score=19.44 Aligned_cols=49 Identities=8% Similarity=0.154 Sum_probs=27.3
Q ss_pred HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH-HHHHHcCCCcEEEEEeCCC
Q psy10355 44 VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA-MLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 44 ~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ivv~NK~D 101 (156)
...+..+++...+-++++...... ......+ ......++| ++.+-+|.+
T Consensus 29 ~~~v~Kai~~gka~LViiA~D~~p--------~~~~~~i~~lc~~~~Ip-~~~v~sk~~ 78 (126)
T 2xzm_U 29 LHEVLRTIEAKQALFVCVAEDCDQ--------GNYVKLVKALCAKNEIK-YVSVPKRAS 78 (126)
T ss_dssp HHHHHHHHHHTCCSEEEEESSCCS--------TTHHHHHHHHHHHTTCC-EEEESCSHH
T ss_pred HHHHHHHHHcCCceEEEEeCCCCh--------HHHHHHHHHHHHHhCCC-EEEECCHHH
Confidence 455666766655555555443321 2344444 455567899 676655555
No 303
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=20.93 E-value=1.1e+02 Score=21.18 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=20.7
Q ss_pred hcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEe
Q psy10355 52 AQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLIN 98 (156)
Q Consensus 52 ~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~N 98 (156)
+..| +++|+|+.. ....+..+...|+| +|-+++
T Consensus 114 ~~Pd-lliV~Dp~~------------e~~ai~EA~~l~IP-vIalvD 146 (208)
T 1vi6_A 114 REPE-VVFVNDPAI------------DKQAVSEATAVGIP-VVALCD 146 (208)
T ss_dssp CCCS-EEEESCTTT------------THHHHHHHHHTTCC-EEEEEC
T ss_pred CCCC-EEEEECCCc------------chhHHHHHHHhCCC-EEEEeC
Confidence 3445 566777743 34455677788999 565554
No 304
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=20.51 E-value=14 Score=20.82 Aligned_cols=33 Identities=18% Similarity=-0.046 Sum_probs=23.0
Q ss_pred HHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 119 ILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++.+++..|...+..++-...+++.|.+|++|-
T Consensus 28 I~~il~AaGveve~~~~~lf~~aL~gk~I~elI 60 (69)
T 2lbf_A 28 INALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60 (69)
T ss_dssp HHHHHHHHTCCCCTHHHHHHHHHTTTSCGGGGG
T ss_pred HHHHHHHcCCCccHHHHHHHHHHHCCCCHHHHH
Confidence 555666667655444566778889999888764
Done!