RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10355
(156 letters)
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural
genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 253 bits (648), Expect = 7e-84
Identities = 61/130 (46%), Positives = 90/130 (69%), Gaps = 3/130 (2%)
Query: 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETG 71
RE+G TV + ++F T R +FTI+DAPGH+ FVPN I G +QAD+A+L + FE+G
Sbjct: 93 RERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESG 152
Query: 72 FDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA 131
FD GQT+EH +LA + G+ +L++ +NKMD V WS+ R+ E K K+LPYL +GF
Sbjct: 153 FDLDGQTKEHMLLASSLGIHNLIIAMNKMD--NVDWSQQRFEEIKSKLLPYLVDIGFF-E 209
Query: 132 KDLSFMPCSG 141
+++++P SG
Sbjct: 210 DNINWVPISG 219
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 254 bits (650), Expect = 9e-83
Identities = 61/130 (46%), Positives = 90/130 (69%), Gaps = 3/130 (2%)
Query: 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETG 71
RE+G TV + ++F T R +FTI+DAPGH+ FVPN I G +QAD+A+L + FE+G
Sbjct: 227 RERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESG 286
Query: 72 FDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA 131
FD GQT+EH +LA + G+ +L++ +NKMD V WS+ R+ E K K+LPYL +GF
Sbjct: 287 FDLDGQTKEHMLLASSLGIHNLIIAMNKMD--NVDWSQQRFEEIKSKLLPYLVDIGFF-E 343
Query: 132 KDLSFMPCSG 141
+++++P SG
Sbjct: 344 DNINWVPISG 353
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 245 bits (627), Expect = 1e-79
Identities = 55/135 (40%), Positives = 83/135 (61%), Gaps = 4/135 (2%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
++R +G T++V FE+D+K + I DAPGH+ F+ MI G + AD AVLV+ + +
Sbjct: 233 TEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNN 292
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYL-KKL 126
FE GF GQTREHA L + G+ +VV +NK+D + WSE R+ E K+ + +L K +
Sbjct: 293 FERGFLENGQTREHAYLLRALGISEIVVSVNKLD--LMSWSEDRFQEIKNIVSDFLIKMV 350
Query: 127 GFNAAKDLSFMPCSG 141
GF ++ F+P S
Sbjct: 351 GFK-TSNVHFVPISA 364
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit;
translation termination, peptide release, GTPase,
translatio; 2.35A {Schizosaccharomyces pombe} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Length = 467
Score = 235 bits (602), Expect = 3e-77
Identities = 85/135 (62%), Positives = 111/135 (82%), Gaps = 1/135 (0%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
++REKGKTVEVGRAYFET+ + F++LDAPGHK +V NMI G +QAD+ VLVISAR+GE
Sbjct: 99 TSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGE 158
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKL- 126
FE GF+RGGQTREHA+LA+T G+ HLVV+INKMD+P+V WSE RY EC DK+ +L+++
Sbjct: 159 FEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVA 218
Query: 127 GFNAAKDLSFMPCSG 141
G+N+ D+ +MP S
Sbjct: 219 GYNSKTDVKYMPVSA 233
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase,
alpha/beta structure, protein biosynthesis, translation;
HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Length = 435
Score = 231 bits (592), Expect = 6e-76
Identities = 62/134 (46%), Positives = 88/134 (65%), Gaps = 1/134 (0%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
L+++RE+G T+ + FET + FTI+DAPGH+ FV NMI G +QAD A+LV+SA+KGE
Sbjct: 62 LKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGE 121
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127
+E G GQTREH +LAKT G+ L+V +NKMD + E RY E D++ +++ G
Sbjct: 122 YEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYG 181
Query: 128 FNAAKDLSFMPCSG 141
FN + F+P
Sbjct: 182 FN-TNKVRFVPVVA 194
>1f60_A Elongation factor EEF1A; protein-protein complex, translation;
1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1
c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Length = 458
Score = 201 bits (512), Expect = 8e-64
Identities = 63/134 (47%), Positives = 93/134 (69%), Gaps = 3/134 (2%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
L+ +RE+G T+++ FET + T++DAPGH+ F+ NMI GT+QAD A+L+I+ GE
Sbjct: 63 LKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGE 122
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127
FE G + GQTREHA+LA T GV+ L+V +NKMD +V W E+R+ E + ++KK+G
Sbjct: 123 FEAGISKDGQTREHALLAFTLGVRQLIVAVNKMD--SVKWDESRFQEIVKETSNFIKKVG 180
Query: 128 FNAAKDLSFMPCSG 141
+N K + F+P SG
Sbjct: 181 YN-PKTVPFVPISG 193
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 132 bits (333), Expect = 1e-37
Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 10/134 (7%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
L+ +RE+G T++V YF T ++ F I D PGH+ + NM G + DLA++++ AR G
Sbjct: 82 LQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV 141
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127
QTR H+ +A G+KH+VV INKMD + E + K L + + +
Sbjct: 142 QT-------QTRRHSYIASLLGIKHIVVAINKMD--LNGFDERVFESIKADYLKFAEGIA 192
Query: 128 FNAAKDLSFMPCSG 141
F ++F+P S
Sbjct: 193 FKPT-TMAFVPMSA 205
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 98.6 bits (246), Expect = 5e-25
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
L + +++G T+++G + F+ + T++DAPGH + ++ DLA++V+ A++G
Sbjct: 51 LPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGP 110
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QT EH ++ + +VV+ K D
Sbjct: 111 KT-------QTGEHMLILDHFNIPIIVVI-TKSD 136
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 89.9 bits (224), Expect = 2e-22
Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 14/92 (15%)
Query: 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGF 72
+KG + ++ + + ++ +DA + + ++I +D+AVL I
Sbjct: 43 KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIPP--------- 93
Query: 73 DRGG---QTREHAMLAKTAGVKHLVVLINKMD 101
G T E + G KH ++ + + D
Sbjct: 94 Q--GLDAHTGECIIALDLLGFKHGIIALTRSD 123
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 86.9 bits (215), Expect = 8e-21
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETG 71
+ +G T+ ++T +H+ +D PGH +V NMI G AQ D A+LV++A G
Sbjct: 341 KARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-- 398
Query: 72 FDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH +L + GV +++V +NK D
Sbjct: 399 -----QTREHILLGRQVGVPYIIVFLNKCD 423
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 86.1 bits (214), Expect = 9e-21
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Query: 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETG 71
R +G T+ + T +H+ D PGH +V NMI GTA D +LV++A G
Sbjct: 48 RARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMP-- 105
Query: 72 FDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH +LA+ GV+H+VV +NK D
Sbjct: 106 -----QTREHLLLARQIGVEHVVVYVNKAD 130
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 84.5 bits (210), Expect = 3e-20
Identities = 37/90 (41%), Positives = 55/90 (61%), Gaps = 7/90 (7%)
Query: 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETG 71
R +G T+ +ET ++H++ +D PGH ++ NMI G AQ D A+LV+SA G
Sbjct: 57 RARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-- 114
Query: 72 FDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH +LA+ GV ++VV +NK+D
Sbjct: 115 -----QTREHILLARQVGVPYIVVFMNKVD 139
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger,
initiate translation, tRNA binding, mRNA bindin binding;
HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB:
3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A*
3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Length = 403
Score = 79.6 bits (197), Expect = 2e-18
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 12 REKGKTVEVGRAYFETDRK-HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFET 70
+ + + E + +DAPGH+ + M+ G A D A+LV++A + +
Sbjct: 56 YVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQP 115
Query: 71 GFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH + GVK+L+++ NK+D
Sbjct: 116 ------QTREHFVALGIIGVKNLIIVQNKVD 140
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase,
EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 78.1 bits (193), Expect = 7e-18
Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 13/116 (11%)
Query: 31 HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90
+ +D+PGH++ + M+ G + D A+LVI+A + + QT+EH M + G+
Sbjct: 82 RVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQP------QTKEHLMALEILGI 135
Query: 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKN 146
++++ NK+D + E + E ++I ++K A++ +P S E N
Sbjct: 136 DKIIIVQNKID----LVDEKQAEENYEQIKEFVKG---TIAENAPIIPISAHHEAN 184
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus
abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A*
1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Length = 410
Score = 76.5 bits (189), Expect = 2e-17
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 31 HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90
+ +DAPGH++ + M+ G + D A+LVI+A + QTREH M + G
Sbjct: 84 RVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRP------QTREHLMALQIIGQ 137
Query: 91 KHLVVLINKMD 101
K++++ NK++
Sbjct: 138 KNIIIAQNKIE 148
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 51.5 bits (124), Expect = 6e-09
Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQA-DLAVLVISARKGEFETGFD 73
G T +G + K T LD PGH++F M AQ D+ +LV++A G
Sbjct: 40 GITQHIGAYQVTVNDKKITFLDTPGHEAFT-TMRARGAQVTDIVILVVAADDGVMP---- 94
Query: 74 RGGQTREHAMLAKTAGVKHLVVLINKMDDPT 104
QT E AK A V ++V INKMD P
Sbjct: 95 ---QTVEAINHAKAANVP-IIVAINKMDKPE 121
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 48.7 bits (117), Expect = 1e-07
Identities = 36/89 (40%), Positives = 45/89 (50%), Gaps = 21/89 (23%)
Query: 23 AY-FETDRKHFTILDAPGHKSFVPNMIGGTAQA-DLAVLVISARKGEFETGFDRG--GQT 78
AY ET+ T LD PGH +F +M AQA D+ VLV++A D G QT
Sbjct: 43 AYHVETENGMITFLDTPGHAAFT-SMRARGAQATDIVVLVVAA---------DDGVMPQT 92
Query: 79 RE---HAMLAKTAGVKHLVVLINKMDDPT 104
E H AK A V +VV +NK+D P
Sbjct: 93 IEAIQH---AKAAQVP-VVVAVNKIDKPE 117
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 46.9 bits (112), Expect = 5e-07
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
Query: 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIG-GTAQADLAVLVISARKGEFETG 71
E + + +D PGH++F + G A ADLA+L++
Sbjct: 53 EGICGDFLKKFSIRETLPGLFFIDTPGHEAFT-TLRKRGGALADLAILIVDI-------- 103
Query: 72 FDRG--GQTREHAMLAKTAGVKHLVVLINKMDDP 103
+ G QT+E + + VV NK+D
Sbjct: 104 -NEGFKPQTQEALNILRMYRTP-FVVAANKIDRI 135
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 42.6 bits (101), Expect = 1e-05
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 26/82 (31%)
Query: 33 TILDAPGHKSFVPNMIGGT------AQA-DLAVLVISARKGEFETGFDRG--GQTREHAM 83
T LD PGH +F + Q D+ +LV++A D G QT E
Sbjct: 55 TFLDTPGHAAF-------SAMRARGTQVTDIVILVVAA---------DDGVMKQTVESIQ 98
Query: 84 LAKTAGVKHLVVLINKMDDPTV 105
AK A V +V+ INK D
Sbjct: 99 HAKDAHVP-IVLAINKCDKAEA 119
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis,
translation; HET: GDP; 2.11A {Coxiella burnetii}
Length = 528
Score = 36.6 bits (85), Expect = 0.002
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
W+ ++++G +V F +LD PGH F + D A++VI A KG
Sbjct: 59 WMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKG 118
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHL--VVLINKMD 101
E +T + L + ++H + INKMD
Sbjct: 119 -VEP------RTIK---LMEVCRLRHTPIMTFINKMD 145
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET:
GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W*
3zvo_Y* 3uoq_W*
Length = 529
Score = 36.6 bits (85), Expect = 0.002
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
W+ ++++G ++ F +LD PGH+ F + D ++VI A KG
Sbjct: 59 WMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG 118
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHL--VVLINKMD 101
E +TR+ L + ++ + +NK+D
Sbjct: 119 -VED------RTRK---LMEVTRLRDTPILTFMNKLD 145
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.003
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 39 GHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79
G K+ V + G Q L L ++ RK + +G D Q+R
Sbjct: 373 GAKNLV---VSGPPQ-SLYGLNLTLRKAKAPSGLD---QSR 406
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 35.0 bits (80), Expect = 0.005
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 7/104 (6%)
Query: 31 HFTILDAPGHKSFVPNMIGGT-----AQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85
+ D G F+ N + + V E + + +
Sbjct: 53 TLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY 112
Query: 86 KTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFN 129
+ VL++KMD + E + + + GF
Sbjct: 113 SPD--AKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFP 154
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE;
1.70A {Oryza sativa japonica group} PDB: 3amk_A
Length = 755
Score = 34.3 bits (79), Expect = 0.011
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 7/37 (18%)
Query: 106 MWSEAR----YNECKDKILPYLKKLGFNAAKDLSFMP 138
M E Y E D +LP ++ +N + M
Sbjct: 190 MSGEEPEVSTYREFADNVLPRIRANNYNT---VQLMA 223
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 31.5 bits (72), Expect = 0.085
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 57 AVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVL 96
V+ I + F R + AK +GV H++ +
Sbjct: 68 TVVFIPSIIHP---SFKRIPEVENLVYAAKQSGVAHIIFI 104
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 31.2 bits (71), Expect = 0.12
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 17/77 (22%)
Query: 32 FTILDAPG-HKSFVPN--MIGGTAQA----DLAVLVISARKGEFETGFDRGGQTREHAML 84
T++D PG + + D +LV + +E + L
Sbjct: 85 VTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYE---------DDVVNL 135
Query: 85 AKTAGVKHLVVLINKMD 101
K + +VV +NK+D
Sbjct: 136 FKEMEIPFVVV-VNKID 151
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 30.5 bits (69), Expect = 0.16
Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 1/83 (1%)
Query: 25 FETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84
+ + F + PG + + D V V + + RE+
Sbjct: 69 VKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAE 128
Query: 85 AKTAGVK-HLVVLINKMDDPTVM 106
+V+ +NK D P +
Sbjct: 129 YGLTLDDVPIVIQVNKRDLPDAL 151
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 30.3 bits (68), Expect = 0.16
Identities = 19/102 (18%), Positives = 28/102 (27%), Gaps = 6/102 (5%)
Query: 31 HFTILDAPGHKSFVPNMIGGTA---QADLAVLVISARKGEFETGFDRGGQTREHAMLAKT 87
+F I D PG F + VI A+ E R T A
Sbjct: 70 NFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEA-LTRLHITVSKAYK-VN 127
Query: 88 AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFN 129
+ V I+K+D + + + L G
Sbjct: 128 PDMN-FEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE 168
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 30.4 bits (68), Expect = 0.18
Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 7/113 (6%)
Query: 31 HFTILDAPGHKSFVPNMIGGTA---QADLAVLVISARKGEFETGFDRGGQTREHAMLAKT 87
+++ PG ++ V VI ++ E+A
Sbjct: 47 DLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINA-ITNLAMIIEYAYKVNP 105
Query: 88 AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCS 140
+ ++ VLI+K+D + + + + L +LG + +SF S
Sbjct: 106 SI--NIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLD-GVQVSFYLTS 155
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 30.0 bits (67), Expect = 0.32
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 32 FTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVK 91
++D+PGH F + D A++V+ +G QT A +K
Sbjct: 100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEG-------VCVQTETVLRQALGERIK 152
Query: 92 HLVVLINKMD 101
VV+INK+D
Sbjct: 153 -PVVVINKVD 161
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 29.4 bits (67), Expect = 0.44
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 10/50 (20%)
Query: 52 AQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
ADL +L I A G + + + ++V +NK+D
Sbjct: 302 NTADLVLLTIDAATGWTTG---------DQEIYEQVKHRPLILV-MNKID 341
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 29.8 bits (66), Expect = 0.44
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 20/84 (23%)
Query: 30 KHFTILDAPGHKSFVPNMIGGT-----------AQADLAVLVISARKGEFETGFDR-GGQ 77
+ +I+D PG S + + DL +L+ A K E F G
Sbjct: 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGA 213
Query: 78 TREHAMLAKTAGVKHLVVLINKMD 101
R H + V++NK D
Sbjct: 214 LRGHE--------DKIRVVLNKAD 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 29.5 bits (67), Expect = 0.45
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 16/76 (21%)
Query: 55 DLAVLVISARKGEFETGF-DRGGQTREHAML--AKTAGVKHLVVLINKMDDPTVMWSEAR 111
D AVLV SA + F T DR L + ++ ++ I KMD + +
Sbjct: 88 DQAVLVFSAVQPSFSTALLDR--------FLVLVEANDIQ-PIICITKMD----LIEDQD 134
Query: 112 YNECKDKILPYLKKLG 127
+ + +G
Sbjct: 135 TEDTIQAYAEDYRNIG 150
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 29.2 bits (66), Expect = 0.52
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 57 AVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVL 96
+L+IS+ + R Q R AK AGVK +
Sbjct: 68 KLLLISSSEVG-----QRAPQHRNVINAAKAAGVKFIAYT 102
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 29.0 bits (66), Expect = 0.54
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 52 AQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
A+ADL + ++ + + E L + + NK+D
Sbjct: 311 AEADLILYLLDLGTERLD------DELTEIRELKAAHPAAKFLTVANKLD 354
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins,
cell membrane, ION transport, transmembrane; HET: GNP;
1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A*
2wjh_A*
Length = 165
Score = 28.6 bits (65), Expect = 0.67
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 15 GKTVEVGRAYFETDRKHFTILDAPG 39
G TVE FE + + F ++D PG
Sbjct: 35 GVTVEKKEGEFEYNGEKFKVVDLPG 59
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases, csgid,
niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 28.7 bits (65), Expect = 0.68
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 82 AMLAKTAGVKHLVVLINKMD 101
AMLAK G K ++VLI +
Sbjct: 318 AMLAKRMGAKKVMVLIQRGA 337
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine
diphosphate binding domain, transferase; HET: TPP; 2.22A
{Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10
c.48.1.1
Length = 673
Score = 29.0 bits (66), Expect = 0.70
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 12/51 (23%)
Query: 44 VPNMIGGTAQADLA----VLVISARKGEFETGFDRGGQT-----REHAMLA 85
+P ++GG+A DL SA +F + + G+ REHAM A
Sbjct: 369 IPALMGGSA--DLTPSNLTRPASANLVDFSSS-SKEGRYIRFGVREHAMCA 416
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport,
transmembrane; HET: GDP; 2.20A {Methanocaldococcus
jannaschii}
Length = 188
Score = 28.3 bits (64), Expect = 0.82
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 15 GKTVEVGRAYFETDRKHFTILDAPG 39
G TVE FE + + F ++D PG
Sbjct: 39 GVTVEKKEGEFEYNGEKFKVVDLPG 63
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 28.3 bits (64), Expect = 0.88
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 17/76 (22%)
Query: 55 DLAVLVISARKGEFETGF-DRGGQTREHAML--AKTAGVKHLVVLINKMDDPTVMWSEAR 111
D ++V + + EF D ML + V+ V++ NK+D + +E
Sbjct: 81 DRVIIVETLKMPEFNNYLLDN--------MLVVYEYFKVE-PVIVFNKID----LLNEEE 127
Query: 112 YNECKDKILPYLKKLG 127
E + I Y + G
Sbjct: 128 KKELERWISIY-RDAG 142
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 28.7 bits (65), Expect = 0.88
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 10/50 (20%)
Query: 52 AQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
+AD+ + V+ A E + +L + ++LVV INK+D
Sbjct: 322 EKADIVLFVLDASSPLDEE---------DRKILERIKNKRYLVV-INKVD 361
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small
GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga
maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 28.0 bits (63), Expect = 1.1
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 15 GKTVEVGRAYFETDRKHFTILDAPG 39
G TVE F ++D PG
Sbjct: 37 GVTVEKKEGVFTYKGYTINLIDLPG 61
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 28.0 bits (62), Expect = 1.1
Identities = 18/125 (14%), Positives = 39/125 (31%), Gaps = 15/125 (12%)
Query: 14 KGKTVEVGRAYFETDRKHFTILDAPG-HKSFVPN----------MIGGTAQADLAVLVIS 62
K T + + ++D PG + VPN ++ + +LV+
Sbjct: 62 KSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVP 121
Query: 63 ARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPY 122
+ T + + M + A ++++ + DD E + I
Sbjct: 122 LGR---YTEEEHKATEKILKMFGERA-RSFMILIFTRKDDLGDTNLHDYLREAPEDIQDL 177
Query: 123 LKKLG 127
+ G
Sbjct: 178 MDIFG 182
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 27.9 bits (62), Expect = 1.3
Identities = 9/97 (9%), Positives = 22/97 (22%), Gaps = 11/97 (11%)
Query: 15 GKTVEVGRAYFETDRKHFTILDAPG--HKSFVPNMIGG-------TAQADLAVLVISARK 65
+ + I+D PG +V + D+ + V
Sbjct: 69 AEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDV 128
Query: 66 GEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102
+ D+ K ++++
Sbjct: 129 YAVDEL-DKQVVIAITQTFGKEIW-CKTLLVLTHAQF 163
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 27.7 bits (62), Expect = 1.4
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 15 GKTVEVGRAYFETDRKHFTILDAPG 39
G TVE E K F ++D PG
Sbjct: 35 GVTVEKKEGIMEYREKEFLVVDLPG 59
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 28.0 bits (63), Expect = 1.4
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 12/52 (23%)
Query: 81 HAMLAKTAGVKHLVVLINKMD--DPTVMWSEARYNECKDKILPYLKKLGFNA 130
+ M+ K ++L+NK D D V + + + G +
Sbjct: 41 NPMIEDILKNKPRIMLLNKADKADAAVT----------QQWKEHFENQGIRS 82
>2e6k_A Transketolase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 2.09A
{Thermus thermophilus}
Length = 651
Score = 27.8 bits (63), Expect = 1.5
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 44 VPNMIGGTAQADLA--VLVISARKGEFETGFDRGGQT-----REHAMLA 85
+P ++GG+A DL + +F + G+ REHAM A
Sbjct: 366 LPELLGGSA--DLTPSNNTKAEGMEDFSRA-NPLGRYLHFGVREHAMGA 411
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium,
metal-binding, thiamine pyrophosphate, transferase; HET:
T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6
c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Length = 669
Score = 27.8 bits (63), Expect = 1.5
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Query: 44 VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQT-----REHAMLA 85
+P +GG+A DLA ++ G D G RE M A
Sbjct: 372 LPEFLGGSA--DLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTA 416
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta
barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP:
c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A*
1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A*
1xbx_A*
Length = 216
Score = 27.7 bits (61), Expect = 1.7
Identities = 11/66 (16%), Positives = 16/66 (24%), Gaps = 3/66 (4%)
Query: 40 HKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVV--LI 97
H+S G + F+ GG E L K + + I
Sbjct: 136 HRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVT-GGLALEDLPLFKGIPIHVFIAGRSI 194
Query: 98 NKMDDP 103
P
Sbjct: 195 RDAASP 200
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase,
structural genomics, center for structural genomics of
infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A
{Bacillus anthracis} PDB: 3hyl_A*
Length = 690
Score = 27.9 bits (63), Expect = 1.7
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 10/49 (20%)
Query: 44 VPNMIGGTAQADLA--VLVISARKGEFETGFDRGGQT-----REHAMLA 85
VP+ GG+A DLA + +F D G+ RE AM A
Sbjct: 396 VPSFFGGSA--DLAGSNKTYMNNEKDFTRD-DYSGKNIWYGVREFAMGA 441
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION
transport, membrane; 1.80A {Escherichia coli} PDB:
3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 27.7 bits (62), Expect = 1.8
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 15 GKTVEVGRAYFETDRKHFTILDAPG 39
G TVE F T T++D PG
Sbjct: 35 GVTVERKEGQFSTTDHQVTLVDLPG 59
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 27.1 bits (61), Expect = 1.8
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Query: 52 AQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QAD + ++ T +A+ + V+ NK D
Sbjct: 82 EQADRVLFMVDGT-----TTDAVDPAEIWPEFIARLPAKLPITVVRNKAD 126
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate,
plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1
Length = 675
Score = 27.8 bits (63), Expect = 1.9
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 44 VPNMIGGTAQADLA--VLVISARKGEFETGFDRGGQT-----REHAMLA 85
VP +IGG+A DLA + + G+F+ + REH M A
Sbjct: 383 VPGLIGGSA--DLASSNMTLLKMFGDFQKD-TAEERNVRFGVREHGMGA 428
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural
genomics, center for structural genomics of infectious
DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Length = 663
Score = 27.4 bits (62), Expect = 2.1
Identities = 12/49 (24%), Positives = 15/49 (30%), Gaps = 10/49 (20%)
Query: 44 VPNMIGGTAQADLA--VLVISARKGEFETGFDRGGQT-----REHAMLA 85
+P M GG+A DL + G RE M A
Sbjct: 372 MPEMFGGSA--DLTGSNNTNWSGSVWLNNT-QEGANYLSYGVREFGMAA 417
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron
uptake, cell inner membrane, cell GTP-binding, ION
transport, membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 27.3 bits (61), Expect = 2.2
Identities = 9/25 (36%), Positives = 9/25 (36%)
Query: 15 GKTVEVGRAYFETDRKHFTILDAPG 39
G TVE F I D PG
Sbjct: 33 GVTVEKKTGEFLLGEHLIEITDLPG 57
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 27.1 bits (61), Expect = 2.5
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 12/50 (24%)
Query: 55 DLAVLVISARKGEFETGF-DRGGQTREHAML--AKTAGVKHLVVLINKMD 101
D +LV++ + E T D+ L A+ ++ V++INKMD
Sbjct: 86 DQVILVVTVKMPETSTYIIDK--------FLVLAEKNELE-TVMVINKMD 126
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 26.9 bits (60), Expect = 2.6
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 54 ADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVL 96
D ++++ R T G R K GV +V
Sbjct: 68 QDAVIVLLGTRNDLSPTTVMSEG-ARNIVAAMKAHGVDKVVAC 109
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 26.8 bits (60), Expect = 2.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 82 AMLAKTAGVKHLVVLINKMD 101
++ K GVK +V L+N
Sbjct: 84 QLVMKDFGVKRVVSLVNDPG 103
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2,
protein structure initiative; 2.00A {Lactobacillus
plantarum}
Length = 449
Score = 26.9 bits (60), Expect = 2.7
Identities = 6/19 (31%), Positives = 9/19 (47%), Gaps = 3/19 (15%)
Query: 120 LPYLKKLGFNAAKDLSFMP 138
L +K LG + L +P
Sbjct: 36 LQRIKDLGTDI---LWLLP 51
>2dy1_A Elongation factor G; translocation, GTP complex, structural
genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus}
SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1
PDB: 1wdt_A*
Length = 665
Score = 27.1 bits (61), Expect = 2.8
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 14/98 (14%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
+ + + TV G A +LDAPG+ FV + G AD A++ +SA G
Sbjct: 51 YTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAG 110
Query: 67 ---EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
E + +A+ G+ +VV + K+D
Sbjct: 111 VQVGTERAWT----------VAERLGLPRMVV-VTKLD 137
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 26.9 bits (60), Expect = 2.9
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 57 AVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVL 96
+L IS + Q A+ AGVKH+
Sbjct: 69 KLLFISGPHYDNT---LLIVQHANVVKAARDAGVKHIAYT 105
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL
ABD; 1.70A {Geobacillus stearothermophilus} SCOP:
b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Length = 686
Score = 27.1 bits (60), Expect = 3.1
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 120 LPYLKKLGFNA 130
LPYLK+LG
Sbjct: 58 LPYLKQLGVTT 68
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 26.6 bits (59), Expect = 3.4
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 84 LAKTAGVKHLVVL-INKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA 131
LA+ G+ ++V + + T A + + K ++ Y + +G
Sbjct: 101 LARRLGLHYVVYSGLENIKKLTAGRLAAAHFDGKGEVEEYFRDIGVPMT 149
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel,
alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus
solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A*
3vgh_A* 3vgg_A* 1eha_A
Length = 558
Score = 26.9 bits (60), Expect = 3.7
Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 120 LPYLKKLGFNAAKDLSFMP 138
L YLK LG A + MP
Sbjct: 125 LDYLKDLGITA---IEIMP 140
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium
tuberculosis}
Length = 700
Score = 26.7 bits (60), Expect = 3.9
Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 17/57 (29%)
Query: 44 VPNMIGGTAQADLA----------VLVISARKGEFETGFDRGGQT-----REHAMLA 85
+P + GG+A DLA E G+T REHAM A
Sbjct: 392 LPELWGGSA--DLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVREHAMGA 446
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 26.5 bits (58), Expect = 4.9
Identities = 19/167 (11%), Positives = 49/167 (29%), Gaps = 19/167 (11%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGG----TAQADLAVLVISA 63
+ ++ R E D + + I + +
Sbjct: 765 FQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLG 824
Query: 64 RKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYL 123
++ + ++A + + V+ ++ ++D + S + +I +
Sbjct: 825 ENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHC 884
Query: 124 KKLGFNAAKDLSFMPCS----GE---------LEKNP-LLLGIEPTN 156
LG + + +S G+ + P L++ EPTN
Sbjct: 885 SMLGLD-PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTN 930
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable,
cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus
marinus}
Length = 696
Score = 26.3 bits (58), Expect = 4.9
Identities = 3/11 (27%), Positives = 6/11 (54%)
Query: 120 LPYLKKLGFNA 130
+ +L+ LG
Sbjct: 271 IDHLEDLGVET 281
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis
H37RV, mesophilic human pathogen, RV1326C gene, glycosyl
transferase; 2.33A {Mycobacterium tuberculosis}
Length = 722
Score = 26.4 bits (59), Expect = 5.1
Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 112 YNECKDKILPYLKKLGFNAAKDLSFMP 138
Y + ++ Y+ GF + +P
Sbjct: 262 YRQLARELTDYIVDQGFTH---VELLP 285
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes,
hydrolase, glycosidase, neopullu; 2.37A {Nostoc
punctiforme} PDB: 2wcs_A 2wkg_A
Length = 488
Score = 26.2 bits (58), Expect = 5.3
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 120 LPYLKKLGFNA 130
L Y++ LG NA
Sbjct: 62 LDYIQNLGINA 72
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus
stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB:
1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Length = 588
Score = 26.2 bits (58), Expect = 5.5
Identities = 5/11 (45%), Positives = 5/11 (45%)
Query: 120 LPYLKKLGFNA 130
L YL LG
Sbjct: 182 LDYLVDLGITG 192
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national
project on structural and functional analyses; HET: GLC;
2.30A {Thermus thermophilus}
Length = 475
Score = 26.1 bits (58), Expect = 5.5
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 120 LPYLKKLGFNA 130
LPYL LG A
Sbjct: 56 LPYLLDLGVEA 66
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase;
2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2
b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A*
1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A*
1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Length = 585
Score = 26.2 bits (58), Expect = 5.8
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 120 LPYLKKLGFNA 130
LPYL++LG A
Sbjct: 179 LPYLEELGVTA 189
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP}
SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Length = 583
Score = 26.2 bits (58), Expect = 6.0
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 120 LPYLKKLGFNA 130
L +L KLG NA
Sbjct: 178 LDHLSKLGVNA 188
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics,
center for structural genomics of infectious diseases,
unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella
enterica subsp}
Length = 618
Score = 26.1 bits (58), Expect = 6.0
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 120 LPYLKKLGFNAAKDLSFMP 138
LPYL +LG + MP
Sbjct: 160 LPYLAELGVTV---IEVMP 175
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 25.9 bits (57), Expect = 6.2
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 13/90 (14%)
Query: 24 YFETDRKHFTILDAPGHKSFVPNMIGG-TAQADLAVLVISARKGEFETGFDRGGQ-TRE- 80
T++D PGH+S ++ + A V V+ + F R + E
Sbjct: 48 VNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS------AAFQREVKDVAEF 101
Query: 81 -HAMLAKTAGVKH---LVVLINKMDDPTVM 106
+ +L + +K+ L++ NK D
Sbjct: 102 LYQVLIDSMALKNSPSLLIACNKQDIAMAK 131
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III
fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB:
2x40_A* 2x42_A*
Length = 721
Score = 26.1 bits (58), Expect = 6.6
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 16/60 (26%)
Query: 52 AQADLAVLVISARKGEFETGFDR----------GGQT---REHAMLAKTAGVKHLVVLIN 98
+ D+AV+VIS GE G+DR +T + + G K +V+L
Sbjct: 443 KKNDVAVIVISRISGE---GYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVIVLLNI 499
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase,
protein-carbohydrate complex, desiccation resistance;
HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP:
b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A*
2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Length = 602
Score = 26.1 bits (58), Expect = 6.9
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
Query: 120 LPYLKKLGFNAAKDLSFMP 138
LPYLK+LG A + MP
Sbjct: 150 LPYLKELGVTA---IQVMP 165
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl
hydrolase, glycogen debraching; HET: GLC A16; 2.8A
{Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A
Length = 718
Score = 26.1 bits (58), Expect = 7.0
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 3/21 (14%)
Query: 119 ILPYLKKLGFNAAKDLSFMPC 139
++ YLK LG + MP
Sbjct: 207 MISYLKDLGITT---VELMPV 224
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 25.7 bits (56), Expect = 7.0
Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 7/52 (13%)
Query: 83 MLAKTAGVKHLVVLINKMD--DPTVMWSEARYNECKDKILPYLKKLGFNAAK 132
L + A ++++ NK D +Y + + ++LG
Sbjct: 91 GLPRFAADNPILLVGNKADLLPR-----SVKYPKLLRWMRRMAEELGLCPVD 137
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 25.7 bits (57), Expect = 7.2
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 12/46 (26%)
Query: 88 AGVKHLVVLINKMD--DPTVMWSEARYNECKDKILPYLKKLGFNAA 131
K ++L+NK+D D K + + KK G
Sbjct: 44 FSRKETIILLNKVDIADEKTT----------KKWVEFFKKQGKRVI 79
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal
nuclease OB fold, tudor domain, cytoplasm, HOST-virus
interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Length = 570
Score = 26.0 bits (56), Expect = 7.5
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVIS---A 63
+LR K+ GK V V Y + A ++ IGG ++A ++S A
Sbjct: 87 FLR-KKLIGKKVNVTVDYIRPASPATETVPAFSERTCATVTIGGI---NIAEALVSKGLA 142
Query: 64 RKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKI-LPY 122
+ D+ + + A+ +K+ L +K + P ++ + K K LP+
Sbjct: 143 TVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADISGDTQKAKQFLPF 202
Query: 123 LKKLGFNAAK 132
L++ G + A
Sbjct: 203 LQRAGRSEAV 212
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 25.5 bits (56), Expect = 7.5
Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 23/95 (24%)
Query: 26 ETDRKHFTILDAPGH-------KSFVPNMIGGTAQADLAVLVI-SARKGEFETGFDRGGQ 77
+ D T++D PGH ++ + ++ S + +
Sbjct: 87 DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV---KGLIFMVDSTVDPK------KLTT 137
Query: 78 TRE--HAMLAKTAGVKH----LVVLINKMDDPTVM 106
T E +L+ T +++ NK + T
Sbjct: 138 TAEFLVDILSITESSCENGIDILIACNKSELFTAR 172
>3l84_A Transketolase; TKT, structural genomics, center for structur
genomics of infectious diseases, csgid, transferase;
HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A*
3m34_A* 3m7i_A*
Length = 632
Score = 25.5 bits (57), Expect = 8.5
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 10/47 (21%)
Query: 44 VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQT-----REHAMLA 85
+ +GG+A DL + G G+ REHAM A
Sbjct: 355 LEGFLGGSA--DLGPSNKTELHS---MGDFVEGKNIHFGIREHAMAA 396
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex,
glycosidase, hydrolase; HET: CE6 ACX; 1.65A
{Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A*
1h3g_A
Length = 601
Score = 25.6 bits (56), Expect = 8.8
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 120 LPYLKKLGFNA 130
L Y+ LGF
Sbjct: 154 LDYIAGLGFTQ 164
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A
{Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A*
1lv2_A*
Length = 237
Score = 25.4 bits (56), Expect = 9.3
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 119 ILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150
+LP L+ + + + + F+ G + + LL
Sbjct: 199 LLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQ 230
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel,
hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1
c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A*
1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Length = 405
Score = 25.5 bits (56), Expect = 9.5
Identities = 4/19 (21%), Positives = 6/19 (31%), Gaps = 1/19 (5%)
Query: 112 YNECKDKILPYLKKLGFNA 130
YN K + + G
Sbjct: 20 YNMMMGK-VDDIAAAGVTH 37
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase,
PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB:
3ac0_A*
Length = 845
Score = 25.6 bits (56), Expect = 9.7
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 52 AQADLAVLVISARKGEFETGFDRGG---QTREHAMLAKTAGVKHLVVLINKMDDPTVM-W 107
A+ D AVL+I G+DR R + ++ V++N+ P W
Sbjct: 572 AKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNTVIVNQSGTPVEFPW 631
Query: 108 SE 109
E
Sbjct: 632 LE 633
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,418,437
Number of extensions: 141089
Number of successful extensions: 558
Number of sequences better than 10.0: 1
Number of HSP's gapped: 513
Number of HSP's successfully gapped: 105
Length of query: 156
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,300,587
Effective search space: 301041090
Effective search space used: 301041090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)