RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10355
(156 letters)
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 151 bits (382), Expect = 3e-47
Identities = 64/140 (45%), Positives = 94/140 (67%), Gaps = 3/140 (2%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
L+ +RE+G T+++ FET + T++DAPGH+ F+ NMI GT+QAD A+L+I+ G
Sbjct: 61 KLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG 120
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKL 126
EFE G + GQTREHA+LA T GV+ L+V +NKMD +V W E+R+ E + ++KK+
Sbjct: 121 EFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMD--SVKWDESRFQEIVKETSNFIKKV 178
Query: 127 GFNAAKDLSFMPCSGELEKN 146
G+N K + F+P SG N
Sbjct: 179 GYN-PKTVPFVPISGWNGDN 197
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 122 bits (307), Expect = 2e-36
Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 11/142 (7%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
++R +G T+ +ET ++H++ +D PGH ++ NMI G AQ D A+LV+SA G
Sbjct: 44 KAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADG 103
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKL 126
QTREH +LA+ GV ++VV +NK+D ++ + + ++ L +
Sbjct: 104 PMP-------QTREHILLARQVGVPYIVVFMNKVD---MVDDPELLDLVEMEVRDLLNQY 153
Query: 127 GFNAAKDLSFMPCSGELEKNPL 148
F ++ + S L +
Sbjct: 154 EFP-GDEVPVIRGSALLALEQM 174
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 115 bits (289), Expect = 2e-33
Identities = 62/135 (45%), Positives = 88/135 (65%), Gaps = 1/135 (0%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
L+++RE+G T+ + FET + FTI+DAPGH+ FV NMI G +QAD A+LV+SA+KG
Sbjct: 58 RLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKG 117
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKL 126
E+E G GQTREH +LAKT G+ L+V +NKMD + E RY E D++ +++
Sbjct: 118 EYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSY 177
Query: 127 GFNAAKDLSFMPCSG 141
GFN + F+P
Sbjct: 178 GFN-TNKVRFVPVVA 191
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 103 bits (257), Expect = 6e-29
Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 11/135 (8%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
++R +G T+ + T +H+ D PGH +V NMI GTA D +LV++A G
Sbjct: 43 NAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDG 102
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKL 126
QTREH +LA+ GV+H+VV +NK D + + +I L +
Sbjct: 103 PMP-------QTREHLLLARQIGVEHVVVYVNKAD---AVQDSEMVELVELEIRELLTEF 152
Query: 127 GFNAAKDLSFMPCSG 141
G+ ++ + S
Sbjct: 153 GYK-GEETPIIVGSA 166
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 96.8 bits (240), Expect = 4e-26
Identities = 85/136 (62%), Positives = 111/136 (81%), Gaps = 1/136 (0%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
++REKGKTVEVGRAYFET+ + F++LDAPGHK +V NMI G +QAD+ VLVISAR+G
Sbjct: 79 STSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG 138
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKL 126
EFE GF+RGGQTREHA+LA+T G+ HLVV+INKMD+P+V WSE RY EC DK+ +L+++
Sbjct: 139 EFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRV 198
Query: 127 -GFNAAKDLSFMPCSG 141
G+N+ D+ +MP S
Sbjct: 199 AGYNSKTDVKYMPVSA 214
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 78.7 bits (193), Expect = 3e-19
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 10/135 (7%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
L+ +RE+G T++V YF T ++ F I D PGH+ + NM G + DLA++++ AR G
Sbjct: 66 GLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG 125
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKL 126
QTR H+ +A G+KH+VV INKMD + K L + + +
Sbjct: 126 VQT-------QTRRHSYIASLLGIKHIVVAINKMDLNGFDER--VFESIKADYLKFAEGI 176
Query: 127 GFNAAKDLSFMPCSG 141
F ++F+P S
Sbjct: 177 AFK-PTTMAFVPMSA 190
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 65.5 bits (159), Expect = 4e-14
Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 9/113 (7%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
++ Q+RE+G T+ I+DAPGH F + D A++V + +G
Sbjct: 48 FMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQG 107
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKI 119
Q+ A+ V + NKMD ++++
Sbjct: 108 -------VEPQSETVWRQAEKYKVPRIAF-ANKMDKTGADLWL-VIRTMQERL 151
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 48.2 bits (114), Expect = 6e-08
Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 25/129 (19%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKH----------------FTILDAPGHKSFVPNMIGG 50
+ ++E+G T++ ++ ++D+PGH F +
Sbjct: 57 TRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAA 116
Query: 51 TAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEA 110
D A++V+ +G QT A +K +VV INK+D + +
Sbjct: 117 LRVTDGALVVVDTIEG-------VCVQTETVLRQALGERIKPVVV-INKVDRALLELQVS 168
Query: 111 RYNECKDKI 119
+
Sbjct: 169 -KEDLYQTF 176
>d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme,
central domain {Escherichia coli [TaxId: 562]}
Length = 396
Score = 31.5 bits (70), Expect = 0.039
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 112 YNECKDKILPYLKKLGFNAAKDLSFMP 138
Y E D+++PY K +GF L +P
Sbjct: 39 YRELADQLVPYAKWMGFTH---LELLP 62
>d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase
{Pseudoalteromonas haloplanktis (Alteromonas
haloplanktis) [TaxId: 228]}
Length = 354
Score = 30.2 bits (67), Expect = 0.086
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 8/33 (24%)
Query: 103 PTVM-----WSEARYNECKDKILPYLKKLGFNA 130
PT W + + + YL G+ A
Sbjct: 2 PTTFVHLFEW---NWQDVAQECEQYLGPKGYAA 31
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 29.8 bits (66), Expect = 0.12
Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 10/66 (15%)
Query: 53 QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARY 112
D+ ++ AR + + M+ K ++L+NK D ++
Sbjct: 15 LIDIVYELVDARIPM----------SSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWK 64
Query: 113 NECKDK 118
+++
Sbjct: 65 EHFENQ 70
>d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm
(Tenebrio molitor), larva [TaxId: 7067]}
Length = 378
Score = 28.7 bits (63), Expect = 0.28
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 109 EARYNECKDKILPYLKKLGFNA 130
E ++N+ D+ +L+ GF
Sbjct: 18 EWKWNDIADECERFLQPQGFGG 39
>d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 403
Score = 28.7 bits (63), Expect = 0.32
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 109 EARYNECKDKILPYLKKLGFNA 130
E R+ + + YL GF
Sbjct: 18 EWRWVDIALECERYLGPKGFGG 39
>d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp.,
ksm-k38 [TaxId: 1409]}
Length = 390
Score = 28.5 bits (62), Expect = 0.34
Identities = 6/27 (22%), Positives = 8/27 (29%), Gaps = 4/27 (14%)
Query: 112 YNECKDKILPYLKKLGFNAAKDLSFMP 138
+N D L G A + P
Sbjct: 22 WNRLHDD-AAALSDAGITA---IWIPP 44
>d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707
[TaxId: 1416]}
Length = 394
Score = 28.4 bits (62), Expect = 0.40
Identities = 6/27 (22%), Positives = 8/27 (29%), Gaps = 4/27 (14%)
Query: 112 YNECKDKILPYLKKLGFNAAKDLSFMP 138
+N LK G A + P
Sbjct: 20 WNRLNSD-ASNLKSKGITA---VWIPP 42
>d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon
Pyrococcus woesei [TaxId: 2262]}
Length = 361
Score = 27.9 bits (61), Expect = 0.46
Identities = 5/27 (18%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
Query: 112 YNECKDKILPYLKKLGFNAAKDLSFMP 138
++ + K +P + G +A + P
Sbjct: 27 WDHIRSK-IPEWYEAGISA---IWLPP 49
>d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 393
Score = 28.0 bits (61), Expect = 0.50
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 4/27 (14%)
Query: 112 YNECKDKILPYLKKLGFNAAKDLSFMP 138
+ + ++ L LG A L P
Sbjct: 23 WTKVANE-ANNLSSLGITA---LWLPP 45
>d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum
vulgare), AMY1 isozyme [TaxId: 4513]}
Length = 347
Score = 28.0 bits (61), Expect = 0.54
Identities = 5/27 (18%), Positives = 8/27 (29%), Gaps = 4/27 (14%)
Query: 112 YNECKDKILPYLKKLGFNAAKDLSFMP 138
YN K + + G + P
Sbjct: 20 YNMMMGK-VDDIAAAGVTH---VWLPP 42
>d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase,
central domain {Deinococcus radiodurans [TaxId: 1299]}
Length = 420
Score = 27.8 bits (60), Expect = 0.54
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 112 YNECKDKILPYLKKLGFNAAKDLSFMP 138
Y +K LPYLK+LG A + MP
Sbjct: 33 YRAAAEK-LPYLKELGVTA---IQVMP 55
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 27.7 bits (60), Expect = 0.61
Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 11/138 (7%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
E + + +D PGH++F G A ADLA+L++ +G
Sbjct: 47 IPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEG 106
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP---TVMWSEARYNECKDKILPYL 123
QT+E + + VV NK+D V + +
Sbjct: 107 -------FKPQTQEALNILRMYRT-PFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ 158
Query: 124 KKLGFNAAKDLSFMPCSG 141
+KL + + + G
Sbjct: 159 QKLDTKVYELVGKLHEEG 176
>d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus
subtilis [TaxId: 1423]}
Length = 344
Score = 27.6 bits (60), Expect = 0.72
Identities = 5/30 (16%), Positives = 10/30 (33%), Gaps = 4/30 (13%)
Query: 109 EARYNECKDKILPYLKKLGFNAAKDLSFMP 138
+N K + + G+ A + P
Sbjct: 13 NWSFNTLKHN-MKDIHDAGYTA---IQTSP 38
>d1hg4a_ a.123.1.1 (A:) Ultraspiracle protein, usp {Drosophila
melanogaster [TaxId: 7227]}
Length = 265
Score = 27.4 bits (60), Expect = 0.82
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 119 ILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150
LP L+ + L + + L L
Sbjct: 224 RLPALRSISLKCQDHLFLFRITSDRPLEELFL 255
>d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera
(Bacillus amyloliquefaciens) and (Bacillus
licheniformis) [TaxId: 1390]}
Length = 393
Score = 27.2 bits (59), Expect = 0.90
Identities = 4/27 (14%), Positives = 10/27 (37%), Gaps = 4/27 (14%)
Query: 112 YNECKDKILPYLKKLGFNAAKDLSFMP 138
+ ++ +L +G A + P
Sbjct: 20 WKRLQND-AEHLSDIGITA---VWIPP 42
>d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan
maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]}
Length = 357
Score = 27.2 bits (59), Expect = 0.90
Identities = 5/19 (26%), Positives = 9/19 (47%), Gaps = 1/19 (5%)
Query: 112 YNECKDKILPYLKKLGFNA 130
YN + + + GF+A
Sbjct: 36 YNILRQQ-AATIAADGFSA 53
>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 154
Score = 26.4 bits (57), Expect = 1.2
Identities = 13/116 (11%), Positives = 32/116 (27%), Gaps = 3/116 (2%)
Query: 16 KTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG 75
KTV E + ++D + + + I + +++ +
Sbjct: 18 KTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALF 77
Query: 76 GQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA 131
+ + + G +V+ + + +L LK G A
Sbjct: 78 TRGEDRDRFTRRCGTDTVVLY---DESSSDWNENTGGESLLGLLLKKLKDEGCRAF 130
>d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain
{Flavobacterium sp. 92 [TaxId: 197856]}
Length = 422
Score = 27.0 bits (58), Expect = 1.3
Identities = 7/19 (36%), Positives = 8/19 (42%), Gaps = 3/19 (15%)
Query: 120 LPYLKKLGFNAAKDLSFMP 138
L Y+ LGF L P
Sbjct: 59 LDYIAGLGFTQ---LWPTP 74
>d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger,
acid amylase [TaxId: 5061]}
Length = 381
Score = 26.9 bits (58), Expect = 1.3
Identities = 6/19 (31%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 120 LPYLKKLGFNAAKDLSFMP 138
L Y++ +GF A + P
Sbjct: 49 LDYIEGMGFTA---IWISP 64
>d2ikka1 d.190.1.2 (A:86-238) Hypothetical transcriptional regulator
YurK {Bacillus subtilis [TaxId: 1423]}
Length = 153
Score = 26.3 bits (57), Expect = 1.3
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 13 EKGKTVEVGRAYFETDRKHFTI 34
+ + T+R FTI
Sbjct: 131 SNDQPIYCSLFLMHTNRVTFTI 152
>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase,
central domain {Archaeon Sulfolobus solfataricus, km1
[TaxId: 2287]}
Length = 400
Score = 26.5 bits (57), Expect = 1.4
Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 120 LPYLKKLGFNAAKDLSFMP 138
L YLK LG A + MP
Sbjct: 35 LDYLKDLGITA---IEIMP 50
>d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase
{Bacillus stearothermophilus, maltogenic alpha-amylase
[TaxId: 1422]}
Length = 407
Score = 26.6 bits (57), Expect = 1.4
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 120 LPYLKKLGFNAAKDLSFMP 138
LPYLK+LG + P
Sbjct: 58 LPYLKQLGVTT---IWLSP 73
>d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga
maritima [TaxId: 2336]}
Length = 391
Score = 26.5 bits (57), Expect = 1.4
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 120 LPYLKKLGFNAAKDLSFMP 138
+ YLK+LG + + MP
Sbjct: 29 VSYLKELGIDF---VWLMP 44
>d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus
oryzae, Taka-amylase [TaxId: 5062]}
Length = 381
Score = 26.5 bits (57), Expect = 1.5
Identities = 6/19 (31%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 120 LPYLKKLGFNAAKDLSFMP 138
L Y++ +GF A + P
Sbjct: 49 LDYIQGMGFTA---IWITP 64
>d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus
[TaxId: 1396]}
Length = 479
Score = 26.5 bits (57), Expect = 1.5
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 120 LPYLKKLGFNAAKDLSFMP 138
L YLK+LG + + P
Sbjct: 37 LDYLKELGIDV---IWLSP 52
>d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas
amyloderamosa [TaxId: 32043]}
Length = 475
Score = 26.6 bits (57), Expect = 1.5
Identities = 7/19 (36%), Positives = 9/19 (47%), Gaps = 3/19 (15%)
Query: 120 LPYLKKLGFNAAKDLSFMP 138
YL LG A + F+P
Sbjct: 49 ASYLASLGVTA---VEFLP 64
>d3d24a1 a.123.1.1 (A:194-420) Steroid hormone receptor ERR1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 227
Score = 26.2 bits (57), Expect = 1.5
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 119 ILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150
LP L++ + G++ + L L
Sbjct: 191 TLPLLRQTAGKVLAHFYGVKLEGKVPMHKLFL 222
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine
esterase Pce (LytD), N-terminal domain {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 305
Score = 26.5 bits (57), Expect = 1.5
Identities = 6/53 (11%), Positives = 15/53 (28%)
Query: 77 QTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFN 129
++ H + T + + + D++ LK+L
Sbjct: 20 ESNGHFAMVDTGEDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELSVQ 72
>d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella
sp., lx3 [TaxId: 576]}
Length = 478
Score = 26.5 bits (57), Expect = 1.6
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 120 LPYLKKLGFNAAKDLSFMP 138
L YLK LG +A + P
Sbjct: 37 LDYLKSLGIDA---IWINP 52
>d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima
[TaxId: 2336]}
Length = 572
Score = 26.5 bits (57), Expect = 1.6
Identities = 7/19 (36%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
Query: 120 LPYLKKLGFNAAKDLSFMP 138
LP++K LG +A + +P
Sbjct: 126 LPFVKSLGADA---IYLLP 141
>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal
domain {Propionibacterium freudenreichii shermanii
[TaxId: 1752]}
Length = 303
Score = 26.4 bits (57), Expect = 1.6
Identities = 4/30 (13%), Positives = 8/30 (26%)
Query: 44 VPNMIGGTAQADLAVLVISARKGEFETGFD 73
+ +M G + + T D
Sbjct: 239 ISSMSLGPGHNPTESVAEMLEGTGYTTNLD 268
>d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain
{Thermoactinomyces vulgaris, TVAII [TaxId: 2026]}
Length = 382
Score = 26.6 bits (57), Expect = 1.7
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
Query: 120 LPYLKKLGFNAAKDLSFMP 138
LPYL++LG A L F P
Sbjct: 59 LPYLEELGVTA---LYFTP 74
>d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 382
Score = 26.2 bits (56), Expect = 2.0
Identities = 6/19 (31%), Positives = 7/19 (36%), Gaps = 3/19 (15%)
Query: 120 LPYLKKLGFNAAKDLSFMP 138
L YL LG + P
Sbjct: 59 LDYLVDLGITG---IYLTP 74
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 227
Score = 25.8 bits (55), Expect = 2.0
Identities = 5/39 (12%), Positives = 18/39 (46%)
Query: 97 INKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLS 135
+ ++D + N + +++P L++ + A+ +
Sbjct: 173 LRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATA 211
>d2p1ta1 a.123.1.1 (A:229-458) Retinoid-X receptor alpha (RXR-alpha)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 230
Score = 25.8 bits (56), Expect = 2.1
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 119 ILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150
LP L+ +G + L F G+ + L+
Sbjct: 193 RLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM 224
>d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain
{Bacillus sp., cyclomaltodextrinase [TaxId: 1409]}
Length = 382
Score = 26.2 bits (56), Expect = 2.1
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 120 LPYLKKLGFNAAKDLSFMP 138
L +L KLG NA + F P
Sbjct: 57 LDHLSKLGVNA---VYFTP 72
>d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea
[TaxId: 489]}
Length = 554
Score = 26.1 bits (56), Expect = 2.1
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 120 LPYLKKLGFNAAKDLSFMP 138
+PY ++LG L MP
Sbjct: 119 IPYFQELGLTY---LHLMP 134
>d1pk5a_ a.123.1.1 (A:) Orphan nuclear receptor NR5a2 (LRH-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 242
Score = 25.8 bits (56), Expect = 2.2
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 119 ILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150
LP L+ + A L + +G++ N LL+
Sbjct: 204 RLPELRAISKQAEDYLYYKHVNGDVPYNNLLI 235
>d2ooia1 d.190.1.2 (A:73-233) Hypothetical protein SA0254
{Staphylococcus aureus [TaxId: 1280]}
Length = 161
Score = 25.7 bits (56), Expect = 2.3
Identities = 5/22 (22%), Positives = 6/22 (27%)
Query: 13 EKGKTVEVGRAYFETDRKHFTI 34
GK + F F I
Sbjct: 137 MTGKPFDSSDIVFHYRHAQFYI 158
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 25.9 bits (56), Expect = 2.3
Identities = 14/88 (15%), Positives = 20/88 (22%), Gaps = 8/88 (9%)
Query: 34 ILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHL 93
I H+S G + F+ GG E L K +
Sbjct: 128 IGQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVT-GGLALEDLPLFKGIPIHVF 186
Query: 94 VV--LINKMDDPTVMWSEARYNECKDKI 119
+ I P + K I
Sbjct: 187 IAGRSIRDAASP-----VEAARQFKRSI 209
>d1xpca_ a.123.1.1 (A:) Estrogen receptor alpha {Human (Homo
sapiens) [TaxId: 9606]}
Length = 245
Score = 25.8 bits (56), Expect = 2.5
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 118 KILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150
IL +++ + + L M C + LLL
Sbjct: 203 LILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLL 235
>d2fa1a1 d.190.1.2 (A:84-241) Probable transcriptional regulator
PhnF, receptor domain {Escherichia coli [TaxId: 562]}
Length = 158
Score = 25.4 bits (55), Expect = 2.5
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 13 EKGKTVEVGRAYFETDRKHFTI 34
+ E + D FT+
Sbjct: 135 GESSPAEYSVSLTRADMIEFTM 156
>d3bwga2 d.190.1.2 (A:89-233) Transcriptional regulator YydK
{Bacillus subtilis [TaxId: 1423]}
Length = 145
Score = 25.4 bits (55), Expect = 2.6
Identities = 2/22 (9%), Positives = 9/22 (40%)
Query: 13 EKGKTVEVGRAYFETDRKHFTI 34
G+ + + + ++ F +
Sbjct: 120 TNGQPFDYSKISYNYEQSQFVV 141
>d1dmha_ b.3.6.1 (A:) Catechol 1,2-dioxygenase {Acinetobacter
calcoaceticus [TaxId: 471]}
Length = 309
Score = 25.7 bits (56), Expect = 2.8
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 67 EFETGFD---RGGQTREHAMLAKTAGVKHLVVLINKMDD 102
E+ G + G +E +L+ G H + + +D
Sbjct: 52 EYWAGVAYLNQLGANQEAGLLSPGLGFDHYLDMRMDAED 90
>d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 236
Score = 25.4 bits (55), Expect = 3.1
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 119 ILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150
+L +++ + + L M C + LLL
Sbjct: 200 LLSHVRHISNKGMEHLLSMKCKNVVPVYDLLL 231
>d3ddva1 d.190.1.2 (A:3-145) Transcriptional regulator EF1328
{Enterococcus faecalis [TaxId: 1351]}
Length = 143
Score = 25.0 bits (54), Expect = 3.3
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 13 EKGKTVEVGRAYFETDRKHFTI 34
E G E R + R F +
Sbjct: 120 ENGLPFEYVRTQYAGSRFEFYL 141
>d2e2ra1 a.123.1.1 (A:234-456) Orphan nuclear receptor ERR3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 25.4 bits (55), Expect = 3.5
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 119 ILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150
LP L++ A + + G++ + L L
Sbjct: 187 TLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFL 218
>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase
{Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Length = 653
Score = 25.3 bits (55), Expect = 3.8
Identities = 7/21 (33%), Positives = 8/21 (38%), Gaps = 3/21 (14%)
Query: 118 KILPYLKKLGFNAAKDLSFMP 138
L Y K LG + L P
Sbjct: 21 DNLWYFKDLGVSH---LYLSP 38
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 25.1 bits (54), Expect = 3.9
Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 7/103 (6%)
Query: 31 HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90
I D G + F A +LV + FD + +A V
Sbjct: 56 KLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS---FDNIRNWIRNIEEHASADV 112
Query: 91 KHLVVLINK-MDDPTVMWSEARYNECKDKILPYLK---KLGFN 129
+ +++ ++D + E D + +++ K N
Sbjct: 113 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 155
>d3cnva1 d.190.1.2 (A:98-259) Putative transcriptional regulator
BB3683 {Bordetella bronchiseptica [TaxId: 518]}
Length = 162
Score = 24.7 bits (53), Expect = 4.5
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 13 EKGKTVEVGRAYFETDRKHFTI 34
+ +EV R + TD H+
Sbjct: 138 YGDRPMEVRRGLYLTDHYHYRN 159
>d1pzla_ a.123.1.1 (A:) Hepatocyte nuclear factor 4-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 24.7 bits (53), Expect = 5.0
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 119 ILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150
+LP L+ + + + + F+ G + + LL
Sbjct: 195 LLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQ 226
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus
subtilis [TaxId: 1423]}
Length = 307
Score = 25.1 bits (53), Expect = 5.0
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 7 WLRQKREKGKTVEV------GRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLV 60
+ QK +KG+TV + F K + G + D+ V
Sbjct: 172 PVYQKIKKGETVTLEDGRIINGNDFLEPPKKGRSVVFSGDTRVSDKLKELARDCDVMVHE 231
Query: 61 ISARKGEFETGFDRGGQTREHAM-LAKTAGVKHLV 94
+ K + + +D T E A AK A K L+
Sbjct: 232 ATFAKEDRKLAYDYYHSTTEQAAVTAKEARAKQLI 266
>d1fcya_ a.123.1.1 (A:) Retinoic acid receptor gamma (RAR-gamma)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 24.6 bits (53), Expect = 6.3
Identities = 4/32 (12%), Positives = 10/32 (31%)
Query: 119 ILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150
+ L+ + A+ + PL+
Sbjct: 201 KITDLRGISTKGAERAITLKMEIPGPMPPLIR 232
>d2p19a1 d.190.1.2 (A:2-149) Transcriptional regulator
Cgl0157/Cg0196 {Corynebacterium glutamicum [TaxId:
1718]}
Length = 148
Score = 24.2 bits (52), Expect = 7.0
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 13 EKGKTVEVGRAYFETDRKHFTI 34
G+ +E+G + D +F
Sbjct: 122 NSGQVIELGSHCYRPDMYNFET 143
>d2qw4a1 a.123.1.1 (A:32-264) Orphan nuclear receptor NR4A1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 24.2 bits (52), Expect = 7.4
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 119 ILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150
LP L+ L + + ++ + P++
Sbjct: 196 KLPELRTLCTQGLQRIFYLKLEDLVPPPPIID 227
>d1p8kz1 d.95.2.1 (Z:1-125) DNA endonuclease I-AniI {Aspergillus
nidulans [TaxId: 162425]}
Length = 125
Score = 23.7 bits (51), Expect = 7.4
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 94 VVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFM 137
V + + V N K ILP +K + K ++
Sbjct: 56 VSFRKRNEIEMVALRIRDKNHLKSFILPIFEKYPMFSNKQYDYL 99
>d2ra5a1 d.190.1.2 (A:66-245) Putative transcriptional regulator
SCO6256 {Streptomyces coelicolor [TaxId: 1902]}
Length = 180
Score = 24.0 bits (51), Expect = 7.9
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 13 EKGKTVEVGRAYFETDRKHFTI 34
+ G+ VE G + R F
Sbjct: 153 DTGRAVEFGTHTYRPSRYSFEF 174
>d2ogga1 d.190.1.2 (A:95-238) Trehalose operon transcriptional
repressor TreR {Bacillus subtilis [TaxId: 1423]}
Length = 144
Score = 23.5 bits (50), Expect = 9.4
Identities = 3/22 (13%), Positives = 6/22 (27%)
Query: 13 EKGKTVEVGRAYFETDRKHFTI 34
E + + D+ F
Sbjct: 117 EDTSLFQYTESRHRLDKFRFVD 138
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0549 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 578,767
Number of extensions: 25480
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 70
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.1 bits)