BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10356
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E1Y|E Chain E, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|F Chain F, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|G Chain G, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|H Chain H, Crystal Structure Of Human Erf1ERF3 COMPLEX
Length = 204
Score = 162 bits (410), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 77/99 (77%), Positives = 86/99 (86%)
Query: 30 IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR 89
IVI+EHKSIIC GY+AV+HIH EEV + ALICL+DKK+GEKSKTRPRFVKQDQ+ I R
Sbjct: 102 IVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIAR 161
Query: 90 LEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIV 128
L AG ICL+ FK FPQMGRFTLRDEGKTIAIGKVLK+V
Sbjct: 162 LRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLV 200
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 160 bits (405), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/102 (74%), Positives = 87/102 (85%)
Query: 28 IYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAI 87
+ IVI+EHKSIIC GY+AV+HIH EEV + ALI L+DKK+GEKSKTRPRFVKQDQ+ I
Sbjct: 338 VQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCI 397
Query: 88 MRLEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129
RL AG ICL+ FK FPQMGRFTLRDEGKTIAIGKVLK+V+
Sbjct: 398 ARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVQ 439
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 92.4 bits (228), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Query: 30 IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR 89
I ILE SI+ GYS VMHIH EEV+ L+ +DK T KSK P F + I
Sbjct: 369 IAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAE 427
Query: 90 LEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129
LE +C+++F+ + MGRFTLRD+G T+A+GKV+KI++
Sbjct: 428 LETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 467
>pdb|3E20|A Chain A, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|D Chain D, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|E Chain E, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|J Chain J, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
Length = 201
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Query: 30 IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR 89
I ILE SI+ GYS VMHIH EEV+ L+ +DK T KSK P F + I
Sbjct: 103 IAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAE 161
Query: 90 LEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129
LE +C+++F+ + MGRFTLRD+G T+A+GKV+KI++
Sbjct: 162 LETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 201
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 81.6 bits (200), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 64/98 (65%)
Query: 30 IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR 89
I+++ H + + GY+ V+H+H + V L+ +D +TG++++ P+F+KQ +AI++
Sbjct: 330 IIVVWHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVK 389
Query: 90 LEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKI 127
+ +C++++ FP +GRF +RD GKT+ +G ++ +
Sbjct: 390 FKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDV 427
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 55/98 (56%)
Query: 30 IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR 89
I ++ H S I GY+ V+H+H + + + +D KTG+ + P+F+K AI+R
Sbjct: 330 IFVIWHPSAITVGYTPVIHVHTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVR 389
Query: 90 LEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKI 127
+ + +++F PQ+GRF +RD +T+ IG V +
Sbjct: 390 FKPVKPLVVEKFSEIPQLGRFAMRDMNRTVGIGIVTDV 427
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 55/98 (56%)
Query: 30 IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR 89
I ++ H S I GY+ V+H+H + + + +D KTG+ + P+F+K AI+R
Sbjct: 333 IFVIWHPSAITVGYTPVIHVHTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVR 392
Query: 90 LEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKI 127
+ + +++F PQ+GRF +RD +T+ IG V +
Sbjct: 393 FKPVKPLVVEKFSEIPQLGRFAMRDMNRTVGIGIVTDV 430
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 30 IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR 89
+++L H I AGYS V+ H L+ D+++G+K + P+F+K A+++
Sbjct: 342 VIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVK 401
Query: 90 LEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129
+ +C++ F +P +GRF +RD +T+A+G V+K V+
Sbjct: 402 FVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVG-VIKSVD 440
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 27 VIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDK-KTGEKSKTRPRFVKQDQ- 84
V+ + + + G ++ I + +K LI IDK T K K R KQ
Sbjct: 373 VLELTTFDXNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAF 432
Query: 85 IAIMRLEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129
+ I +E I L ++GR LR +G+TIA GK+ +I +
Sbjct: 433 VEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQ 477
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 27 VIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDK-KTGEKSKTRPRFVKQDQ- 84
V+ + + + G ++ I + +K LI IDK T K K R KQ
Sbjct: 507 VLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAF 566
Query: 85 IAIMRLEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129
+ I +E I L ++GR LR +G+TIA GK+ +I +
Sbjct: 567 VEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQ 611
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 27 VIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDK-KTGEKSKTRPRFVKQDQ- 84
V+ + + + G ++ I + +K LI IDK T K K R KQ
Sbjct: 373 VLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAF 432
Query: 85 IAIMRLEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129
+ I +E I L ++GR LR +G+TIA GK+ +I +
Sbjct: 433 VEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQ 477
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 32.0 bits (71), Expect = 0.11, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 39 ICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICL 98
I +G + V+H+ V++K I ++ K +R R + + I L+ +CL
Sbjct: 511 ILSGSTLVLHLGRTVTSVSLK--IVTVNNKRSRHIASRKRAL----VRISFLDGLFPLCL 564
Query: 99 DQFKLFPQMGRFTLRDEGKTIAIGKV 124
+ P +GRF LR G T+A G V
Sbjct: 565 AE--ECPALGRFILRRSGDTVAAGIV 588
>pdb|2PN1|A Chain A, Crystal Structure Of Carbamoylphosphate Synthase Large
Subunit (Split Gene In Mj) (Zp_00538348.1) From
Exiguobacterium Sp. 255-15 At 2.00 A Resolution
Length = 331
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 48 HIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLF 104
H+ + ++ V AL+ LID + G ++ RF I+ AA +C D++ +
Sbjct: 63 HLLTLCQDEGVTALLTLIDPELGLLAQATERFQAIGVTVIVSPYAACELCFDKYTXY 119
>pdb|1D2F|A Chain A, X-Ray Structure Of Maly From Escherichia Coli: A
Pyridoxal-5'- Phosphate-Dependent Enzyme Acting As A
Modulator In Mal Gene Expression
pdb|1D2F|B Chain B, X-Ray Structure Of Maly From Escherichia Coli: A
Pyridoxal-5'- Phosphate-Dependent Enzyme Acting As A
Modulator In Mal Gene Expression
Length = 390
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 19 QRVIYGPSVIYIV 31
Q V+YGPSVIY+V
Sbjct: 88 QTVVYGPSVIYMV 100
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 109 RFTLRDEGKTIAIGKVLKIVE 129
RF +R+ G+T+ G V KI+E
Sbjct: 385 RFAIREGGRTVGAGVVTKILE 405
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 109 RFTLRDEGKTIAIGKVLKIVE 129
RF +R+ G+T+ G V KI+E
Sbjct: 385 RFAIREGGRTVGAGVVTKILE 405
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 109 RFTLRDEGKTIAIGKVLKIVE 129
RF +R+ G+T+ G V KI+E
Sbjct: 386 RFAIREGGRTVGAGVVTKILE 406
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 109 RFTLRDEGKTIAIGKVLKIVE 129
RF +R+ G+T+ G V KI+E
Sbjct: 385 RFAIREGGRTVGAGVVTKILE 405
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 109 RFTLRDEGKTIAIGKVLKIVE 129
RF +R+ G+T+ G V KI+E
Sbjct: 385 RFAIREGGRTVGAGVVTKILE 405
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 109 RFTLRDEGKTIAIGKVLKIVE 129
RF +R+ G+T+ G V KI+E
Sbjct: 385 RFAIREGGRTVGAGVVTKILE 405
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 109 RFTLRDEGKTIAIGKVLKIVE 129
RF +R+ G+T+ G V KI+E
Sbjct: 385 RFAIREGGRTVGAGVVTKILE 405
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 25.8 bits (55), Expect = 7.4, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 109 RFTLRDEGKTIAIGKVLKIVE 129
RF +R+ G+T+ G V KI+E
Sbjct: 385 RFAIREGGRTVGAGVVTKILE 405
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 25.8 bits (55), Expect = 7.4, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 109 RFTLRDEGKTIAIGKVLKIVE 129
RF +R+ G+T+ G V KI+E
Sbjct: 385 RFAIREGGRTVGAGVVTKILE 405
>pdb|1PVW|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|C Chain C, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
Length = 227
Score = 25.4 bits (54), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 61 LICLIDKKTGEKSKT-RPRFVKQDQIAIMRLEAAGVIC 97
L+ D++ GE +F+ + I IMR +A G+IC
Sbjct: 18 LVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLIC 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,561,466
Number of Sequences: 62578
Number of extensions: 121194
Number of successful extensions: 252
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 28
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)