Query psy10356
Match_columns 129
No_of_seqs 120 out of 1094
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 15:50:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e1y_E Eukaryotic peptide chai 100.0 1.7E-32 5.9E-37 203.6 12.0 121 6-129 81-201 (204)
2 3j2k_7 ERF3, eukaryotic polype 100.0 3.8E-30 1.3E-34 209.0 15.7 121 6-129 319-439 (439)
3 3p26_A Elongation factor 1 alp 100.0 6.2E-28 2.1E-32 197.7 14.7 120 7-129 355-477 (483)
4 1f60_A Elongation factor EEF1A 100.0 5.6E-28 1.9E-32 197.1 13.0 111 19-129 331-441 (458)
5 1jny_A EF-1-alpha, elongation 99.9 2.2E-26 7.4E-31 186.4 15.4 111 19-129 319-429 (435)
6 3izq_1 HBS1P, elongation facto 99.9 5.1E-27 1.7E-31 197.6 12.0 120 7-129 489-611 (611)
7 1r5b_A Eukaryotic peptide chai 99.9 1.1E-26 3.7E-31 190.0 8.3 110 19-129 358-467 (467)
8 1zun_B Sulfate adenylate trans 99.9 4.7E-23 1.6E-27 166.7 14.9 104 19-125 328-433 (434)
9 3mca_A HBS1, elongation factor 99.9 1.8E-22 6.1E-27 169.4 13.4 101 19-128 491-592 (592)
10 2c78_A Elongation factor TU-A; 99.8 3E-18 1E-22 137.2 11.8 92 19-129 309-405 (405)
11 1d2e_A Elongation factor TU (E 99.7 1.3E-17 4.5E-22 133.4 10.7 92 19-129 291-387 (397)
12 1wb1_A Translation elongation 99.7 3.8E-18 1.3E-22 140.0 5.4 102 18-128 285-394 (482)
13 2elf_A Protein translation elo 99.6 2.1E-15 7.3E-20 120.1 12.7 89 21-124 278-369 (370)
14 3avx_A Elongation factor TS, e 99.6 6.5E-15 2.2E-19 131.1 10.2 91 20-129 583-678 (1289)
15 1s0u_A EIF-2-gamma, translatio 99.4 3.2E-12 1.1E-16 102.3 11.0 79 19-125 316-407 (408)
16 1kk1_A EIF2gamma; initiation o 99.4 3.3E-12 1.1E-16 102.2 11.0 79 19-125 318-409 (410)
17 3sjy_A Translation initiation 99.1 5.1E-10 1.7E-14 89.4 10.8 89 4-125 300-402 (403)
18 1kca_A Repressor protein CI; g 34.5 59 0.002 20.3 4.2 51 7-62 16-68 (109)
19 2hnf_A Repressor protein CI101 30.7 86 0.0029 20.1 4.6 51 7-62 47-99 (133)
20 2gks_A Bifunctional SAT/APS ki 26.2 13 0.00044 30.6 -0.3 33 93-125 299-338 (546)
21 3iz6_D 40S ribosomal protein S 21.5 1.8E+02 0.0061 21.8 5.3 45 79-127 153-198 (265)
22 2kvo_A Photosystem II reaction 21.3 49 0.0017 21.9 1.9 36 82-118 25-61 (120)
23 3lnn_A Membrane fusion protein 20.4 2.6E+02 0.009 20.6 6.5 71 24-94 206-284 (359)
No 1
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=99.98 E-value=1.7e-32 Score=203.57 Aligned_cols=121 Identities=64% Similarity=0.935 Sum_probs=110.7
Q ss_pred eeEEcCCCcCccccceeeccEEEEEEecCCccccccCceEEEEEeeeeEeEEEEEeEEeeccCcCccccCCCceeeCCCE
Q psy10356 6 HATVKGEGMLWQEQRVIYGPSVIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQI 85 (129)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~f~A~v~~l~~~~~i~~G~~~~l~~~t~~~~~~i~~I~~~id~~tg~~~~~~p~~l~~gd~ 85 (129)
+|.|-+++.+ +|..+++|+|+|+||+++.+|.+||+|++|+||.+++|+|.+|.+++|++||++.+.+|++|++||.
T Consensus 81 rG~vl~~~~~---~~~~~~~f~a~v~~l~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~gd~ 157 (204)
T 3e1y_E 81 PGFILCDPNN---LCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQV 157 (204)
T ss_dssp TTCEEBCSSS---CCCCCSEEEEEEECCSCCSCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCCTTCE
T ss_pred cceEEECCCC---CCchhEEEEEEEEEeCCCCccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcCCCCE
Confidence 3444444443 3688999999999999988999999999999999999999999999999999887888999999999
Q ss_pred EEEEEEECceeeecccccCCcceEEEEEeCCCeEEEEEEEEeeC
Q psy10356 86 AIMRLEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129 (129)
Q Consensus 86 a~v~l~~~~pi~ve~~~~~~~lGrfiLrd~g~Tva~G~V~~v~~ 129 (129)
|.|+|++++|+|+|+|++|+.+|||+|||+|+|+|+|+|+++.+
T Consensus 158 a~v~l~~~~pi~~e~~~~~~~~Grfilrd~~~Tva~G~V~~v~~ 201 (204)
T 3e1y_E 158 CIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVP 201 (204)
T ss_dssp EEEEEEESSCCCCCCTTSSGGGTEEEEECSSSCCEEEEEEEECC
T ss_pred EEEEEEECCeEEEEEcccCcCCCCEEEEECCcEEEEEEEEEEec
Confidence 99999999999999999999999999999999999999999864
No 2
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.97 E-value=3.8e-30 Score=208.98 Aligned_cols=121 Identities=63% Similarity=0.925 Sum_probs=112.6
Q ss_pred eeEEcCCCcCccccceeeccEEEEEEecCCccccccCceEEEEEeeeeEeEEEEEeEEeeccCcCccccCCCceeeCCCE
Q psy10356 6 HATVKGEGMLWQEQRVIYGPSVIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQI 85 (129)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~f~A~v~~l~~~~~i~~G~~~~l~~~t~~~~~~i~~I~~~id~~tg~~~~~~p~~l~~gd~ 85 (129)
+|.|-+++++. |..+++|+|+|+||+|+.+|.+||+|++|||+.+++|+|.+|.+++|.+||++.+.+|++|++||.
T Consensus 319 rG~vl~~~~~~---~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~~ 395 (439)
T 3j2k_7 319 PGFILCDPSNL---CHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQV 395 (439)
T ss_pred CcEEecCCCCC---CceeeEEEEEEEEeCCCCcCCCCCEEEEEEeceEEEEEEEEEEEeecCCchhhhccCcceecCCcE
Confidence 45666666553 578899999999999988899999999999999999999999999999999887889999999999
Q ss_pred EEEEEEECceeeecccccCCcceEEEEEeCCCeEEEEEEEEeeC
Q psy10356 86 AIMRLEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129 (129)
Q Consensus 86 a~v~l~~~~pi~ve~~~~~~~lGrfiLrd~g~Tva~G~V~~v~~ 129 (129)
|.|+|++.+|+|+|+|++|+.||||+|||+|+|+|+|+|++|++
T Consensus 396 ~~v~~~~~~p~~~e~~~~~~~~g~f~l~d~~~tv~~G~i~~v~~ 439 (439)
T 3j2k_7 396 CIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVQ 439 (439)
T ss_pred EEEEEEeCCeEEEeeccccccCCCEEEEECCceEEEEEEEEecC
Confidence 99999999999999999999999999999999999999999975
No 3
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.95 E-value=6.2e-28 Score=197.66 Aligned_cols=120 Identities=23% Similarity=0.276 Sum_probs=108.9
Q ss_pred eEEcCCCcCccccceeeccEEEEEEecCCccccccCceEEEEEeeeeEeEEEEEeEEeeccCcCccccCCCceeeCCCEE
Q psy10356 7 ATVKGEGMLWQEQRVIYGPSVIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIA 86 (129)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~f~A~v~~l~~~~~i~~G~~~~l~~~t~~~~~~i~~I~~~id~~tg~~~~~~p~~l~~gd~a 86 (129)
|.|..++++ ++|..+++|+|+|+||+++.+|.+||+|+||+||.+++|+|.+|.+++|++|++. +++|++|++||.|
T Consensus 355 G~vl~~~~~--~~~~~~~~f~a~v~~l~~~~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~~-~~~~~~l~~~~~~ 431 (483)
T 3p26_A 355 GDLAASVDY--SSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KKKIRHLGSKQRA 431 (483)
T ss_dssp TCEEECTTC--CCCEECSEEEEEEEECSCSSCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEEC-CSCCSCBCSSCEE
T ss_pred eEEEEcCCC--CCCceeeEEEEEEEEECCCCCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCCccc-ccCccCcCCCCEE
Confidence 334444444 2479999999999999998999999999999999999999999999999999876 6789999999999
Q ss_pred EEEEEE---CceeeecccccCCcceEEEEEeCCCeEEEEEEEEeeC
Q psy10356 87 IMRLEA---AGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129 (129)
Q Consensus 87 ~v~l~~---~~pi~ve~~~~~~~lGrfiLrd~g~Tva~G~V~~v~~ 129 (129)
.|+|++ .+|+|+|+|++|+.+|||+|||+|+|||+|+|+++.+
T Consensus 432 ~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~~~~tv~~G~i~~~~~ 477 (483)
T 3p26_A 432 FVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQ 477 (483)
T ss_dssp EEEEEECSCSSCCEECCTTTCTTTTEEEEEETTEEEEEEEEEEECC
T ss_pred EEEEEECCCCCcEEEEecccCccCCCEEEEeCCCEEEEEEEEEecc
Confidence 999999 8899999999999999999999999999999998753
No 4
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.95 E-value=5.6e-28 Score=197.10 Aligned_cols=111 Identities=25% Similarity=0.518 Sum_probs=106.7
Q ss_pred cceeeccEEEEEEecCCccccccCceEEEEEeeeeEeEEEEEeEEeeccCcCccccCCCceeeCCCEEEEEEEECceeee
Q psy10356 19 QRVIYGPSVIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICL 98 (129)
Q Consensus 19 ~~~~~~~f~A~v~~l~~~~~i~~G~~~~l~~~t~~~~~~i~~I~~~id~~tg~~~~~~p~~l~~gd~a~v~l~~~~pi~v 98 (129)
+|..+++|+|+|+||+++.+|.+||+|++|+||.+++|+|..|.+++|++|++..+++|++|++||.|.|+|++.+|+|+
T Consensus 331 ~~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~p~~~ 410 (458)
T 1f60_A 331 PPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCV 410 (458)
T ss_dssp CCCCCSEEEEEEEECSCSCCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTTCEEEEEEEESSCCCC
T ss_pred CCceeeEEEEEEEEeCCCCCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCccccCCCCEEEEEEEECCeEEE
Confidence 47899999999999999899999999999999999999999999999999998888899999999999999999999999
Q ss_pred cccccCCcceEEEEEeCCCeEEEEEEEEeeC
Q psy10356 99 DQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129 (129)
Q Consensus 99 e~~~~~~~lGrfiLrd~g~Tva~G~V~~v~~ 129 (129)
|+|.+|+.||||+|||+|+|+|+|+|+++.+
T Consensus 411 ~~~~~~~~~grf~lr~~~~tv~~G~v~~~~~ 441 (458)
T 1f60_A 411 EAFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 441 (458)
T ss_dssp CCTTTCGGGSEEEEEETTEEEEEEEEEEEEC
T ss_pred ecCccCCCCCcEEEEECCeEEEEEEEEeecc
Confidence 9999999999999999999999999998753
No 5
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.94 E-value=2.2e-26 Score=186.38 Aligned_cols=111 Identities=27% Similarity=0.656 Sum_probs=106.3
Q ss_pred cceeeccEEEEEEecCCccccccCceEEEEEeeeeEeEEEEEeEEeeccCcCccccCCCceeeCCCEEEEEEEECceeee
Q psy10356 19 QRVIYGPSVIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICL 98 (129)
Q Consensus 19 ~~~~~~~f~A~v~~l~~~~~i~~G~~~~l~~~t~~~~~~i~~I~~~id~~tg~~~~~~p~~l~~gd~a~v~l~~~~pi~v 98 (129)
+|..+.+|+|+++||+++.+|.+||++++|+||.+++|+|..|.+++|++|++..+++|++|++||.|.|+|++.+|+|+
T Consensus 319 ~~~~~~~f~a~v~~l~~~~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~p~~~ 398 (435)
T 1jny_A 319 PPTVADEFTARIIVVWHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCV 398 (435)
T ss_dssp CCCEESEEEEEEEECCCSSCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEESSCEEC
T ss_pred CceEeEEEEEEEEEECCCCcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEEEECceEEE
Confidence 47889999999999998899999999999999999999999999999999998878899999999999999999999999
Q ss_pred cccccCCcceEEEEEeCCCeEEEEEEEEeeC
Q psy10356 99 DQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129 (129)
Q Consensus 99 e~~~~~~~lGrfiLrd~g~Tva~G~V~~v~~ 129 (129)
|+|.+++.||||+|||+|+|+|+|+|+++.+
T Consensus 399 ~~~~~~~~~grf~lr~~~~tv~~G~i~~~~~ 429 (435)
T 1jny_A 399 EKYNEFPPLGRFAMRDMGKTVGVGIIVDVKP 429 (435)
T ss_dssp CCTTTSGGGTEEEEEETTEEEEEEEEEEEEC
T ss_pred ecCCcCCcCccEEEEECCeEEEEEEEeeecC
Confidence 9999999999999999999999999998753
No 6
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.1e-27 Score=197.55 Aligned_cols=120 Identities=23% Similarity=0.276 Sum_probs=109.1
Q ss_pred eEEcCCCcCccccceeeccEEEEEEecCCccccccCceEEEEEeeeeEeEEEEEeEEeeccCcCccccCCCceeeCCCEE
Q psy10356 7 ATVKGEGMLWQEQRVIYGPSVIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIA 86 (129)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~f~A~v~~l~~~~~i~~G~~~~l~~~t~~~~~~i~~I~~~id~~tg~~~~~~p~~l~~gd~a 86 (129)
|.|.+.+.+ ++|..+++|+|+|+||+++.+|.+||+|++||||.+++|+|.+|.+++|++|++. +++|++|++||.|
T Consensus 489 Gdvl~~~~~--~~~~~~~~f~a~v~~l~~~~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~-~~~~~~l~~~d~a 565 (611)
T 3izq_1 489 GDLAASVDY--SSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KKKIRHLGSKQRA 565 (611)
T ss_dssp TCEEBCSTT--CSCCCBSCEEEEEEECSCSSCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBC-TTCSCSSSSCCSE
T ss_pred eEEccCCCC--CCCceeeEEEEEEEEECCCCCCCCCCEEEEEECCeEeeEEeeeeeeeeccccccc-ccCccccCCCCEE
Confidence 344444443 2478999999999999998999999999999999999999999999999999976 6789999999999
Q ss_pred EEEEEE---CceeeecccccCCcceEEEEEeCCCeEEEEEEEEeeC
Q psy10356 87 IMRLEA---AGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129 (129)
Q Consensus 87 ~v~l~~---~~pi~ve~~~~~~~lGrfiLrd~g~Tva~G~V~~v~~ 129 (129)
.|+|++ .+|+|+|+|++++.+|||+|||+|+|||+|+|++|.+
T Consensus 566 ~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~~~~Tva~G~i~~v~~ 611 (611)
T 3izq_1 566 FVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQ 611 (611)
T ss_dssp EEEEEESSCSSCBCCCCTTTCHHHHEEEEESSSSEEEEEEEEEECC
T ss_pred EEEEEECCCCCceEEeecccCCCCCcEEEEeCCCEEEEEEEEEecC
Confidence 999999 8899999999999999999999999999999999853
No 7
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.93 E-value=1.1e-26 Score=189.95 Aligned_cols=110 Identities=43% Similarity=0.670 Sum_probs=105.1
Q ss_pred cceeeccEEEEEEecCCccccccCceEEEEEeeeeEeEEEEEeEEeeccCcCccccCCCceeeCCCEEEEEEEECceeee
Q psy10356 19 QRVIYGPSVIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICL 98 (129)
Q Consensus 19 ~~~~~~~f~A~v~~l~~~~~i~~G~~~~l~~~t~~~~~~i~~I~~~id~~tg~~~~~~p~~l~~gd~a~v~l~~~~pi~v 98 (129)
+|..+++|+|+|+||+++.+|.+||+|++|+|+.+++|+|..|.+++|+ ++++.+++|++|++||.|.|+|++.+|+|+
T Consensus 358 ~~~~~~~f~a~v~~l~~~~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~-~~~~~~~~~~~l~~g~~~~v~l~~~~p~~~ 436 (467)
T 1r5b_A 358 PVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPVCM 436 (467)
T ss_dssp CCCEEEEEEEEEEECSSCCCBSSCCCBEEESSSCCCCBEESSCCCCCCS-SCCCCSSCCSBCCTTCBCCEEEEEEEEEEC
T ss_pred CCccceEEEEEEEEeCCCCccCCCCEEEEEEeCCEEEEEEEEEEEEecC-CccccccCccccCCCCEEEEEEEECcEEEE
Confidence 5789999999999999988999999999999999999999999999998 887777889999999999999999999999
Q ss_pred cccccCCcceEEEEEeCCCeEEEEEEEEeeC
Q psy10356 99 DQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129 (129)
Q Consensus 99 e~~~~~~~lGrfiLrd~g~Tva~G~V~~v~~ 129 (129)
|+|.+|+.||||+|||+|+|+|+|+|+++.+
T Consensus 437 ~~~~~~~~~grf~lrd~~~Tv~~G~i~~~~~ 467 (467)
T 1r5b_A 437 ERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 467 (467)
T ss_dssp CCTTTCHHHHEEEEECSSSCEEEEEEEEEEC
T ss_pred EEcCcCCCCccEEEEECCeEEEEEEEEEecC
Confidence 9999999999999999999999999999875
No 8
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.90 E-value=4.7e-23 Score=166.67 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=98.1
Q ss_pred cceeeccEEEEEEecCCccccccCceEEEEEeeeeEeEEEEEeEEeeccCcCccccCCCceeeCCCEEEEEEEECceeee
Q psy10356 19 QRVIYGPSVIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICL 98 (129)
Q Consensus 19 ~~~~~~~f~A~v~~l~~~~~i~~G~~~~l~~~t~~~~~~i~~I~~~id~~tg~~~~~~p~~l~~gd~a~v~l~~~~pi~v 98 (129)
+|..+++|+|+++||+ +.+|.+||++++|+|+.+++|+|..|.+++|.+++++ ++|++|++||.|.|+|++.+|+|+
T Consensus 328 ~~~~~~~f~a~~~~l~-~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~~--~~~~~l~~~d~~~v~~~~~~p~~~ 404 (434)
T 1zun_B 328 VPQVSDAFDAMLVWMA-EEPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLEE--GPASSLQLNEIGRVKVSLDAPIAL 404 (434)
T ss_dssp CCCEEEEEEEEEEECC-SSCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCCC--CCCSCBCTTCEEEEEEEEEEEEEC
T ss_pred CCCcccEEEEEEEEec-cccCCCCCEEEEEEcCCEEEEEEEEEeeeeccccccc--cCccEeCCCCEEEEEEEECCeEEE
Confidence 3688999999999997 4799999999999999999999999999999999873 678999999999999999999999
Q ss_pred cccccCCcceEEEEEeC--CCeEEEEEEE
Q psy10356 99 DQFKLFPQMGRFTLRDE--GKTIAIGKVL 125 (129)
Q Consensus 99 e~~~~~~~lGrfiLrd~--g~Tva~G~V~ 125 (129)
|+|.+++.||||+|||. |+|+|+|+|+
T Consensus 405 ~~~~~~~~~grf~l~d~~~~~tv~~G~i~ 433 (434)
T 1zun_B 405 DGYSSNRTTGAFIVIDRLTNGTVAAGMII 433 (434)
T ss_dssp CCTTTCTTTTEEEEECTTTCCEEEEEEEE
T ss_pred cccccCCccceEEEEECCCCcEEEEEEEe
Confidence 99999999999999984 8999999996
No 9
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.88 E-value=1.8e-22 Score=169.36 Aligned_cols=101 Identities=24% Similarity=0.360 Sum_probs=93.7
Q ss_pred cceeeccEEEEEEecCCccccccCceEEEEEeeeeEeEEEEEeEEeeccCcCccccCCCceeeCCCEEEEEEE-ECceee
Q psy10356 19 QRVIYGPSVIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLE-AAGVIC 97 (129)
Q Consensus 19 ~~~~~~~f~A~v~~l~~~~~i~~G~~~~l~~~t~~~~~~i~~I~~~id~~tg~~~~~~p~~l~~gd~a~v~l~-~~~pi~ 97 (129)
++..+..|+|+++||+++.||..||+++||+||.+++|+| +|.+ ..+++|++|++||.|.|+|+ +.+|+|
T Consensus 491 ~~~~~~~f~a~v~~~~~~~pi~~g~~~~l~~~t~~~~~~i-~l~~--------~~~~~~~~l~~gd~~~v~l~fl~~p~~ 561 (592)
T 3mca_A 491 PVRRVRSFVAEIQTFDIHGPILSGSTLVLHLGRTVTSVSL-KIVT--------VNNKRSRHIASRKRALVRISFLDGLFP 561 (592)
T ss_dssp CCEEESEEEEEEEECSCSSCEETTEEEEEECSSCEEEEEE-EEEE--------SSSSCCSEECSSCEEEEEEEESSSCEE
T ss_pred CccccCeEEEEEEEECCCccCCCCCEEEEEEcCcEEEEEE-EEEe--------ccccchhccCCCCEEEEEEEECCCcEE
Confidence 4688999999999999989999999999999999999999 8765 12467899999999999999 999999
Q ss_pred ecccccCCcceEEEEEeCCCeEEEEEEEEee
Q psy10356 98 LDQFKLFPQMGRFTLRDEGKTIAIGKVLKIV 128 (129)
Q Consensus 98 ve~~~~~~~lGrfiLrd~g~Tva~G~V~~v~ 128 (129)
+|+|++|+.+|||+||++|+|||+|+|++|+
T Consensus 562 ~e~~~~~~~~~rfilr~~~~Tv~~G~i~~v~ 592 (592)
T 3mca_A 562 LCLAEECPALGRFILRRSGDTVAAGIVKELC 592 (592)
T ss_dssp ECCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred EEeccCCCCCCeEEEEECCcEEEEEEEEEcC
Confidence 9999999999999999999999999999984
No 10
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.77 E-value=3e-18 Score=137.21 Aligned_cols=92 Identities=20% Similarity=0.238 Sum_probs=82.5
Q ss_pred cceeeccEEEEEEecCCc-----cccccCceEEEEEeeeeEeEEEEEeEEeeccCcCccccCCCceeeCCCEEEEEEEEC
Q psy10356 19 QRVIYGPSVIYIVILEHK-----SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAA 93 (129)
Q Consensus 19 ~~~~~~~f~A~v~~l~~~-----~~i~~G~~~~l~~~t~~~~~~i~~I~~~id~~tg~~~~~~p~~l~~gd~a~v~l~~~ 93 (129)
+|..+++|+|+++||+++ .+|..||++.+|+++.+++|+|. +. ..+++|++||.+.|+|++.
T Consensus 309 ~~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-~~------------~~~~~l~~~~~~~v~~~~~ 375 (405)
T 2c78_A 309 SITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQ-LP------------PGVEMVMPGDNVTFTVELI 375 (405)
T ss_dssp SSEEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC------------TTCCCBCTTCEEEEEEEEE
T ss_pred CCceeEEEEEEEEEecccCCCccccccCCceEEEEEcccEEEEEEE-Ec------------cCccccCCCCEEEEEEEEC
Confidence 468899999999999863 68999999999999999999987 41 1356899999999999999
Q ss_pred ceeeecccccCCcceEEEEEeCCCeEEEEEEEEeeC
Q psy10356 94 GVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129 (129)
Q Consensus 94 ~pi~ve~~~~~~~lGrfiLrd~g~Tva~G~V~~v~~ 129 (129)
+|+|+|+| +||+|||+|+|+|+|+|+++.+
T Consensus 376 ~p~~~~~~------~rf~lr~~~~ti~~G~i~~~~~ 405 (405)
T 2c78_A 376 KPVALEEG------LRFAIREGGRTVGAGVVTKILE 405 (405)
T ss_dssp EEEEECTT------CEEEEEETTEEEEEEEEEEECC
T ss_pred ceEEEccC------CEEEEEcCCeEEEEEEEEeccC
Confidence 99999987 7999999999999999999875
No 11
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.73 E-value=1.3e-17 Score=133.37 Aligned_cols=92 Identities=18% Similarity=0.138 Sum_probs=81.9
Q ss_pred cceeeccEEEEEEecCCc-----cccccCceEEEEEeeeeEeEEEEEeEEeeccCcCccccCCCceeeCCCEEEEEEEEC
Q psy10356 19 QRVIYGPSVIYIVILEHK-----SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAA 93 (129)
Q Consensus 19 ~~~~~~~f~A~v~~l~~~-----~~i~~G~~~~l~~~t~~~~~~i~~I~~~id~~tg~~~~~~p~~l~~gd~a~v~l~~~ 93 (129)
++..+++|+|+++||+++ .+|..||++.+|+++.+++|+|. +. ..|++|++||.+.|+|++.
T Consensus 291 ~~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-l~------------~~~~~l~~~~~~~v~~~~~ 357 (397)
T 1d2e_A 291 SIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRII-LP------------PGKELAMPGEDLKLTLILR 357 (397)
T ss_dssp SCCCEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC------------SSCCCBCTTCEEEEEEEEE
T ss_pred CCCcccEEEEEEEEeccccccCccccCCCCEEEEEEecCEEEEEEE-Ec------------CCcccccCCCEEEEEEEEC
Confidence 367799999999999974 59999999999999999999987 41 1357899999999999999
Q ss_pred ceeeecccccCCcceEEEEEeCCCeEEEEEEEEeeC
Q psy10356 94 GVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129 (129)
Q Consensus 94 ~pi~ve~~~~~~~lGrfiLrd~g~Tva~G~V~~v~~ 129 (129)
+|+|+|+| +||+||++++|+|+|+|+++.+
T Consensus 358 ~p~~~~~~------~r~~lr~~~~ti~~G~i~~~~~ 387 (397)
T 1d2e_A 358 QPMILEKG------QRFTLRDGNRTIGTGLVTDTPA 387 (397)
T ss_dssp EEECCCTT------CEEEEEETTEEEEEEEEEECCC
T ss_pred CeEEEccC------CeEEEEeCCeEEEEEEEeeccc
Confidence 99999987 7999999999999999998754
No 12
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.72 E-value=3.8e-18 Score=139.98 Aligned_cols=102 Identities=9% Similarity=-0.034 Sum_probs=91.4
Q ss_pred ccceeeccEEEEEEecCC-ccccccCceEEEEEeeeeEeEEEEEeE-EeeccCcCccccCCCceeeCCCEEEEEEEECce
Q psy10356 18 EQRVIYGPSVIYIVILEH-KSIICAGYSAVMHIHCVAEEVNVKALI-CLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGV 95 (129)
Q Consensus 18 ~~~~~~~~f~A~v~~l~~-~~~i~~G~~~~l~~~t~~~~~~i~~I~-~~id~~tg~~~~~~p~~l~~gd~a~v~l~~~~p 95 (129)
+++..+++|+|+|+||++ +.+|..||++.+|+++.+++|+|..+. +++|.+++.. .+++|++||.+.|+|++.+|
T Consensus 285 ~~~~~~~~~~a~v~~l~~~~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~---~~~~l~~g~~~~v~l~~~~p 361 (482)
T 1wb1_A 285 TKLQTVDKIVAKIKISDIFKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENI---ILNEVISGNEXYXAFELEEK 361 (482)
T ss_dssp CCCCCEEEEEECCCCCSSCCSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEE---ECCSSCCSSCCCEEEEEEEE
T ss_pred CCCceeeEEEEEEEEeccCCcccCCCCEEEEEEcccEEEEEEEEEeccccccccccc---cchhhcCCCEEEEEEEcCcc
Confidence 456788999999999986 589999999999999999999999998 8999888643 25789999999999999999
Q ss_pred eeecccccCCcceEEEEEe---C---CCeEEEEEEEEee
Q psy10356 96 ICLDQFKLFPQMGRFTLRD---E---GKTIAIGKVLKIV 128 (129)
Q Consensus 96 i~ve~~~~~~~lGrfiLrd---~---g~Tva~G~V~~v~ 128 (129)
+|+|++ +||+||| + ++|+|+|+|+++.
T Consensus 362 v~~~~~------~rfilr~~~~~~~~~~tvg~G~v~~~~ 394 (482)
T 1wb1_A 362 VLAEVG------DRVLITRLDLPPTTLRIXGHGLIEEFK 394 (482)
T ss_dssp ECCCSS------CCCBEECTTSCTTSCCCCCBCCEEECC
T ss_pred EEecCC------CeEEEEECCCCccCceEeeEEEEEecc
Confidence 999976 8999999 4 8999999999874
No 13
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.64 E-value=2.1e-15 Score=120.05 Aligned_cols=89 Identities=13% Similarity=0.167 Sum_probs=78.1
Q ss_pred eeeccEEEEEEecCCccccccCceEEEEEeeeeEeEEEEEeEEeeccCcCccccCCCceeeCCCEEEEEEEECceeeecc
Q psy10356 21 VIYGPSVIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQ 100 (129)
Q Consensus 21 ~~~~~f~A~v~~l~~~~~i~~G~~~~l~~~t~~~~~~i~~I~~~id~~tg~~~~~~p~~l~~gd~a~v~l~~~~pi~ve~ 100 (129)
..+++|+|+++||+++.+|.+||++.+|++|.+++|+|..|.+ |.+ ++ +.+++||.|.|+|++.+|+|+|+
T Consensus 278 ~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~v~~l~~--d~~-~~------~~~~~g~~~~v~l~~~~pi~~~~ 348 (370)
T 2elf_A 278 IVTTDYTLECTVSKFTKKIEPASVLHLFVGLQSEPVRVEKILV--DGN-EV------EEAKPGSTCVLELSGNKKLAYSK 348 (370)
T ss_dssp EEEEEEEEEEEECTTSCCBCTTCEEEEEETTEEEEEEEEEEEE--TTE-EE------SCBCTTCEEEEEEEEEEEEEECT
T ss_pred ceeEEEEEEEEEECCCCCCCCCCEEEEEEcCCEEEEEEEEEEe--CCC-cc------eeecCCCEEEEEEEECcEEEEeC
Confidence 7889999999999998999999999999999999999999864 432 22 23568999999999999999999
Q ss_pred cccCCcceEEEEEeCC---CeEEEEEE
Q psy10356 101 FKLFPQMGRFTLRDEG---KTIAIGKV 124 (129)
Q Consensus 101 ~~~~~~lGrfiLrd~g---~Tva~G~V 124 (129)
|. ||+|||.+ +|+|+|.|
T Consensus 349 ~~------rfilr~~~~~~~tig~G~~ 369 (370)
T 2elf_A 349 QD------RFLLANLDLTQRFAAYGFS 369 (370)
T ss_dssp TS------CEEEECTTSSSCEEEEEEE
T ss_pred CC------EEEEEECCCCCEEEEEEEe
Confidence 84 99999954 69999987
No 14
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.57 E-value=6.5e-15 Score=131.09 Aligned_cols=91 Identities=19% Similarity=0.201 Sum_probs=81.0
Q ss_pred ceeeccEEEEEEecCC-----ccccccCceEEEEEeeeeEeEEEEEeEEeeccCcCccccCCCceeeCCCEEEEEEEECc
Q psy10356 20 RVIYGPSVIYIVILEH-----KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAG 94 (129)
Q Consensus 20 ~~~~~~f~A~v~~l~~-----~~~i~~G~~~~l~~~t~~~~~~i~~I~~~id~~tg~~~~~~p~~l~~gd~a~v~l~~~~ 94 (129)
|..+.+|+|+|+||++ +.+|..||++++|+++.+++|+|. |. ..+++|++||.+.|+|++.+
T Consensus 583 ~~~~~~F~A~V~~L~~~egg~~~pi~~G~~p~l~igT~~vtg~I~-L~------------~~~~~L~~Gd~a~V~L~l~~ 649 (1289)
T 3avx_A 583 IKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIE-LP------------EGVEMVMPGDNIKMVVTLIH 649 (1289)
T ss_dssp CCEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEECSSCEEEEEEE-CC------------TTCCCBCTTCCCEEEEEEEE
T ss_pred CccceeEEEEEEEEccccccccccccCCCceEEEEeeeeEEEEEE-EC------------CCcccccCCCEEEEEEEECc
Confidence 5779999999999985 358999999999999999999987 31 23578999999999999999
Q ss_pred eeeecccccCCcceEEEEEeCCCeEEEEEEEEeeC
Q psy10356 95 VICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129 (129)
Q Consensus 95 pi~ve~~~~~~~lGrfiLrd~g~Tva~G~V~~v~~ 129 (129)
|+|+|++ +||+|||+|+|+|+|+|+++.+
T Consensus 650 Pi~ve~g------~RFiLRd~grTIG~G~V~~v~~ 678 (1289)
T 3avx_A 650 PIAMDDG------LRFAIREGGRTVGAGVVAKVLS 678 (1289)
T ss_dssp EEECCTT------CEEEEEETTEEEEEEEEEEECC
T ss_pred eEEEccC------CEEEEEeCCeEEEEEEEeeech
Confidence 9999987 7999999999999999998753
No 15
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.38 E-value=3.2e-12 Score=102.30 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=69.7
Q ss_pred cceeeccEEEEEEecCCc---------cccccCceEEEEEeeeeEeEEEEEeEEeeccCcCccccCCCceeeCCCEEEEE
Q psy10356 19 QRVIYGPSVIYIVILEHK---------SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR 89 (129)
Q Consensus 19 ~~~~~~~f~A~v~~l~~~---------~~i~~G~~~~l~~~t~~~~~~i~~I~~~id~~tg~~~~~~p~~l~~gd~a~v~ 89 (129)
+|..+++|+|+++||+++ .+|..||++++|++|.+++|+|..+.. | .++
T Consensus 316 ~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~--------------------~--~~~ 373 (408)
T 1s0u_A 316 LPPIREKITIRANLLDRVVGTKEELKIEPLRTGEVLMLNIGTATTAGVITSARG--------------------D--IAD 373 (408)
T ss_dssp SCCEEEEEEEEEEECCCCSSCSSTTCCCCCCTTCEEEEEETTEEEEEEEEEEET--------------------T--EEE
T ss_pred CCceeEEEEEEEEEEeccccccccccccCCCCCCEEEEEEcCCEEEEEEEEecC--------------------C--EEE
Confidence 467889999999999984 899999999999999999999998731 2 677
Q ss_pred EEECceeeecccccCCcceEEEEEe----CCCeEEEEEEE
Q psy10356 90 LEAAGVICLDQFKLFPQMGRFTLRD----EGKTIAIGKVL 125 (129)
Q Consensus 90 l~~~~pi~ve~~~~~~~lGrfiLrd----~g~Tva~G~V~ 125 (129)
|++.+|+|++++ .||+||+ .++|+|.|.|+
T Consensus 374 ~~~~~p~~~~~~------~~~~~~~~~~~~~r~ig~G~i~ 407 (408)
T 1s0u_A 374 IKLKLPICAEIG------DRVAISRRVGSRWRLIGYGTIE 407 (408)
T ss_dssp EEEEEEEECCTT------CEEEEEEECSSSEEEEEEEEEC
T ss_pred EEECCcEEecCC------CEEEEEEecCCCeEEEEEEEEc
Confidence 788899999987 6999999 68999999986
No 16
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.37 E-value=3.3e-12 Score=102.22 Aligned_cols=79 Identities=11% Similarity=0.098 Sum_probs=69.9
Q ss_pred cceeeccEEEEEEecCCc---------cccccCceEEEEEeeeeEeEEEEEeEEeeccCcCccccCCCceeeCCCEEEEE
Q psy10356 19 QRVIYGPSVIYIVILEHK---------SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR 89 (129)
Q Consensus 19 ~~~~~~~f~A~v~~l~~~---------~~i~~G~~~~l~~~t~~~~~~i~~I~~~id~~tg~~~~~~p~~l~~gd~a~v~ 89 (129)
+|..+++|+|+++||+++ .+|..||++.+|+++.+++|+|..+.. | .++
T Consensus 318 ~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~--------------------~--~~~ 375 (410)
T 1kk1_A 318 LPPVWDSLRLEVHLLERVVGTEQELKVEPIKRKEVLLLNVGTARTMGLVTGLGK--------------------D--EIE 375 (410)
T ss_dssp SCCEEEEEEEEEEECCCCC--CCCCSCCCCCTTCEEEEEETTEEEEEEEEEEET--------------------T--EEE
T ss_pred CCceeEEEEEEEEEEecccccccccccccCCCCCEEEEEEcCCEEeEEEEEecC--------------------C--EEE
Confidence 467889999999999984 899999999999999999999998631 2 677
Q ss_pred EEECceeeecccccCCcceEEEEEe----CCCeEEEEEEE
Q psy10356 90 LEAAGVICLDQFKLFPQMGRFTLRD----EGKTIAIGKVL 125 (129)
Q Consensus 90 l~~~~pi~ve~~~~~~~lGrfiLrd----~g~Tva~G~V~ 125 (129)
|++.+|+|++++ .||+||+ .++|+|.|.|+
T Consensus 376 l~~~~p~~~~~~------~~~~~~~~~~~~~r~ig~G~i~ 409 (410)
T 1kk1_A 376 VKLQIPVCAEPG------DRVAISRQIGSRWRLIGYGIIK 409 (410)
T ss_dssp EEEEEEEECCTT------CEEEEEEEETTEEEEEEEEEEE
T ss_pred EEeCCcEEecCC------CEEEEEEecCCCcEEEEEEEEc
Confidence 888899999987 6999999 68999999996
No 17
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.11 E-value=5.1e-10 Score=89.37 Aligned_cols=89 Identities=15% Similarity=0.089 Sum_probs=70.5
Q ss_pred eceeEEcCCCcCccccceeeccEEEEEEecCC---------ccccccCceEEEEEeeeeEeEEEEEeEEeeccCcCcccc
Q psy10356 4 RGHATVKGEGMLWQEQRVIYGPSVIYIVILEH---------KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSK 74 (129)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~f~A~v~~l~~---------~~~i~~G~~~~l~~~t~~~~~~i~~I~~~id~~tg~~~~ 74 (129)
||.+.+..++ +|..+++|+|+++||++ +.+|.+|+++.+|++|.++.|+|..+.
T Consensus 300 ~G~vl~~~~~-----~~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~gt~~~~~~v~~~~------------ 362 (403)
T 3sjy_A 300 LGSIITLADA-----EVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSVK------------ 362 (403)
T ss_dssp TTCEEEETTC-----CCCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTCEEEEEETTEEEEEEEEEEC------------
T ss_pred cccEEeCCCC-----CCcceeEEEEEEEEEeccccccccccCCCCCCCCEEEEEECccEEEEEEEEec------------
Confidence 4555444433 25778999999999996 689999999999999999999998872
Q ss_pred CCCceeeCCCEEEEEEEECceeeecccccCCcce-EEEE-EeCC---CeEEEEEEE
Q psy10356 75 TRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMG-RFTL-RDEG---KTIAIGKVL 125 (129)
Q Consensus 75 ~~p~~l~~gd~a~v~l~~~~pi~ve~~~~~~~lG-rfiL-rd~g---~Tva~G~V~ 125 (129)
++ .+++++.+|+|++.. . ||+| |+.+ +.+|.|.|.
T Consensus 363 --------~~--~~~~~l~~p~~~~~g------~~r~~i~r~~~~~~r~~g~g~i~ 402 (403)
T 3sjy_A 363 --------KD--EIEVELRRPVAVWSN------NIRTVISRQIAGRWRMIGWGLVE 402 (403)
T ss_dssp --------SS--EEEEEEEEEEECCSS------SCEEEEEEEETTEEEEEEEEEEE
T ss_pred --------Cc--eEEEEeCCcEeeccC------CEEEEEEEEeCCcEEEEEEEEEE
Confidence 11 478888899999875 5 8997 6543 699999985
No 18
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=34.51 E-value=59 Score=20.31 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=29.3
Q ss_pred eEEcCCCcCcccc--ceeeccEEEEEEecCCccccccCceEEEEEeeeeEeEEEEEeE
Q psy10356 7 ATVKGEGMLWQEQ--RVIYGPSVIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALI 62 (129)
Q Consensus 7 ~~~~~~~~~~~~~--~~~~~~f~A~v~~l~~~~~i~~G~~~~l~~~t~~~~~~i~~I~ 62 (129)
..|.|+||..+.- |....- .+++++....+..|.-+++.+.. ....|+++.
T Consensus 16 ~~V~GdSM~~~~g~~p~i~~G---d~v~Vd~~~~~~~Gdivv~~~~~--~~~~vKrl~ 68 (109)
T 1kca_A 16 LEVEGNSMTAPTGSKPSFPDG---MLILVDPEQAVEPGDFCIARLGG--DEFTFKKLI 68 (109)
T ss_dssp EECCSSTTCCCTTCSSCCCTT---CEEEEETTSCCCTTCEEEEECST--TCEEEEEEE
T ss_pred EEEeCcCcCCCCCCCCeeCCC---CEEEEecCCcCCCCCEEEEEECC--CeEEEEEEE
Confidence 4689999985321 222222 34455654567888777776543 235566664
No 19
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=30.74 E-value=86 Score=20.13 Aligned_cols=51 Identities=14% Similarity=0.234 Sum_probs=27.4
Q ss_pred eEEcCCCcCcccc--ceeeccEEEEEEecCCccccccCceEEEEEeeeeEeEEEEEeE
Q psy10356 7 ATVKGEGMLWQEQ--RVIYGPSVIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALI 62 (129)
Q Consensus 7 ~~~~~~~~~~~~~--~~~~~~f~A~v~~l~~~~~i~~G~~~~l~~~t~~~~~~i~~I~ 62 (129)
..|.|+||+.+.. |....- .+++++....+..|.-+++.+.. -...|+++.
T Consensus 47 ~~V~GdSM~~~~g~~p~i~~G---d~v~vd~~~~~~~Gdivv~~~~~--~~~~vKrl~ 99 (133)
T 2hnf_A 47 LEVEGNSMTTPTGSKTSFPDG---MLILVDPEQAVEPGDFCIARLGG--DEFTFAKLI 99 (133)
T ss_dssp EECCSSTTCCC---CCCCCTT---CEEEEETTSCCCTTSEEEEEETT--TEEEEEEEE
T ss_pred EEEeCCCcCCCcCCCCccCCC---CEEEEccCCCCCCCCEEEEEECC--CEEEEEEEE
Confidence 4688999974211 222222 34445544467778777776543 235566654
No 20
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=26.23 E-value=13 Score=30.55 Aligned_cols=33 Identities=9% Similarity=0.254 Sum_probs=21.7
Q ss_pred CceeeecccccCCcceEEEEEeC--C-CeEEE----EEEE
Q psy10356 93 AGVICLDQFKLFPQMGRFTLRDE--G-KTIAI----GKVL 125 (129)
Q Consensus 93 ~~pi~ve~~~~~~~lGrfiLrd~--g-~Tva~----G~V~ 125 (129)
.+|++++.|..++..|+|++.|. + .|.++ |+|.
T Consensus 299 i~~v~fd~~~y~~~~g~~i~id~~~~~~~~~~~iSgt~iR 338 (546)
T 2gks_A 299 IKMVPFEELVYVPELDQYVEINEAKKRNLKYINISGTEIR 338 (546)
T ss_dssp CEEEECCCCEEETTTTEEECSCC---------------CT
T ss_pred ceEEeccceEEEcCCCeEEeeeccCCCCceeeecchhhhh
Confidence 47999999999999999999883 3 66665 6553
No 21
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=21.49 E-value=1.8e+02 Score=21.82 Aligned_cols=45 Identities=16% Similarity=0.383 Sum_probs=30.4
Q ss_pred eeeCCCEEEEEEEECceeeecccccCCcceEEEEEeCCCeEE-EEEEEEe
Q psy10356 79 FVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDEGKTIA-IGKVLKI 127 (129)
Q Consensus 79 ~l~~gd~a~v~l~~~~pi~ve~~~~~~~lGrfiLrd~g~Tva-~G~V~~v 127 (129)
.++.||...+.+...+-+-+=+|+ .|..++.-+|+-+| +|.|.++
T Consensus 153 ~ik~~DTv~idl~~~kI~d~ikfe----~Gnl~mvtgG~n~GriG~I~~i 198 (265)
T 3iz6_D 153 IIKANDTIKIDLETNKIVDFIKFD----VGNVVMVTGGRNTGRVGVIKNR 198 (265)
T ss_dssp CCCTTCEEEECSSSCCEEEEECCS----TTCEEEECSSSSCSCEEEEEEE
T ss_pred CcccCCEEEEECCCCceeeEEEcc----CCCEEEEEcCCcceEEEEEEEE
Confidence 588999999888766643333332 36777777766666 7888765
No 22
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=21.30 E-value=49 Score=21.94 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=26.6
Q ss_pred CCCEEEEEEEECceeeecccccCCcceEEEEEe-CCCe
Q psy10356 82 QDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRD-EGKT 118 (129)
Q Consensus 82 ~gd~a~v~l~~~~pi~ve~~~~~~~lGrfiLrd-~g~T 118 (129)
.|..+.+.|.+.+|-+++.+......| .-|+| +|..
T Consensus 25 dg~~g~A~f~F~~p~al~~~~~~~itg-m~LiDeEGei 61 (120)
T 2kvo_A 25 NGQSGMAKFYFLEPTILAKESTDDITG-MYLIDDEGEI 61 (120)
T ss_dssp TSCSEEEEEEEESCGGGTSSCGGGCCC-EEEECSSCEE
T ss_pred cCCccEEEEEECCchhccccccCccee-EEEEccCccE
Confidence 588999999999999999884444445 66677 4553
No 23
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=20.43 E-value=2.6e+02 Score=20.59 Aligned_cols=71 Identities=13% Similarity=0.082 Sum_probs=48.1
Q ss_pred ccEEEEEEecCC-ccccccCceEEEEEe--eeeEeEEEEEeEEeeccCcCccc----cCCC-ceeeCCCEEEEEEEECc
Q psy10356 24 GPSVIYIVILEH-KSIICAGYSAVMHIH--CVAEEVNVKALICLIDKKTGEKS----KTRP-RFVKQDQIAIMRLEAAG 94 (129)
Q Consensus 24 ~~f~A~v~~l~~-~~~i~~G~~~~l~~~--t~~~~~~i~~I~~~id~~tg~~~----~~~p-~~l~~gd~a~v~l~~~~ 94 (129)
..+.+.+.+-.. -..|..|....+.+. .....++|..|...+|..++... -.+| ..|++|..+.+.|....
T Consensus 206 ~~l~v~~~v~e~~~~~i~~G~~v~v~~~~~~~~~~g~v~~i~~~~d~~~~~~~v~~~~~~~~~~l~~G~~~~v~i~~~~ 284 (359)
T 3lnn_A 206 SHVFVTANAQEKDLGHVYVGQSATVKFDAYDDPQPGKVRYVGQILDADTRTTKVRMVFDNPDGRLRPGMFAQATFLSQP 284 (359)
T ss_dssp SEEEEEEEECGGGSTTCCTTCEEEEBCSSCSSCEEEEEEECCCCCCTTSCCEEEEEEEECSSCCCCTTCEEEEEEECCC
T ss_pred CeEEEEEEeCHHHHhhCCCCCeEEEEEcCCCCcEEEEEEEEecccCCCCcEEEEEEEecCCCCCcCCCCEEEEEEecCC
Confidence 345555554432 246889999888765 44568899999887776665221 1233 35999999999998753
Done!