RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10356
(129 letters)
>gnl|CDD|239675 cd03704, eRF3c_III, This family represents eEF1alpha-like
C-terminal region of eRF3 homologous to the domain III
of EF-Tu. eRF3 is a GTPase, which enhances the
termination efficiency by stimulating the eRF1 activity
in a GTP-dependent manner. The C-terminal region is
responsible for translation termination activity and is
essential for viability. Saccharomyces cerevisiae eRF3
(Sup35p) is a translation termination factor which is
divided into three regions N, M and a C-terminal
eEF1a-like region essential for translation termination.
Sup35NM is a non-pathogenic prion-like protein with
the property of aggregating into polymer-like fibrils.
Length = 108
Score = 163 bits (414), Expect = 1e-53
Identities = 70/99 (70%), Positives = 78/99 (78%), Gaps = 1/99 (1%)
Query: 30 IVILEHK-SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIM 88
I ILE K SII AGYSAV+HIH EEV +K LI LIDKKTG+KSK RPRFVK I
Sbjct: 10 IAILELKRSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIA 69
Query: 89 RLEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKI 127
RLE G ICL++F+ FPQ+GRFTLRDEGKTIAIGKVLK+
Sbjct: 70 RLETTGPICLEKFEDFPQLGRFTLRDEGKTIAIGKVLKL 108
>gnl|CDD|227581 COG5256, TEF1, Translation elongation factor EF-1alpha (GTPase)
[Translation, ribosomal structure and biogenesis].
Length = 428
Score = 103 bits (258), Expect = 4e-27
Identities = 39/103 (37%), Positives = 64/103 (62%)
Query: 27 VIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIA 86
I++L H II +GY+ V+H H + L+ +D +TG+K + P+F+K+ A
Sbjct: 326 TAQIIVLWHPGIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAA 385
Query: 87 IMRLEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129
I+++E +CL++ PQ+GRF LRD G+TIA GKVL++ +
Sbjct: 386 IVKIEPEKPLCLEKVSEIPQLGRFALRDMGQTIAAGKVLEVKK 428
>gnl|CDD|239760 cd04093, HBS1_C, HBS1_C: this family represents the C-terminal
domain of Hsp70 subfamily B suppressor 1 (HBS1) which is
homologous to the domain III of EF-1alpha. This group
contains proteins similar to yeast Hbs1, a G protein
known to be important for efficient growth and protein
synthesis under conditions of limiting translation
initiation and, to associate with Dom34. It has been
speculated that yeast Hbs1 and Dom34 proteins may
function as part of a complex with a role in gene
expression.
Length = 107
Score = 86.5 bits (215), Expect = 3e-23
Identities = 34/98 (34%), Positives = 52/98 (53%)
Query: 30 IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR 89
I+ I G + H + E + L+ ++DK TGE SK +PR + + Q AI+
Sbjct: 10 ILTFNVDKPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVE 69
Query: 90 LEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKI 127
+E I L+ FK ++GR LR +G+TIA G V +I
Sbjct: 70 IELERPIPLELFKDNKELGRVVLRRDGETIAAGLVTEI 107
>gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed.
Length = 425
Score = 89.6 bits (223), Expect = 4e-22
Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 10/105 (9%)
Query: 30 IVILEHKSIICAGYSAVMHIH-----CVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQ 84
IV+L+H S I GY+ V H H C EE+ K +D +TG+ ++ P+F+K
Sbjct: 323 IVVLQHPSAITVGYTPVFHAHTAQVACTFEELVKK-----LDPRTGQVAEENPQFIKTGD 377
Query: 85 IAIMRLEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129
AI++++ + +++ K PQ+GRF +RD G+TIA G V+ +
Sbjct: 378 AAIVKIKPTKPLVIEKVKEIPQLGRFAIRDMGQTIAAGMVIDVKP 422
>gnl|CDD|239676 cd03705, EF1_alpha_III, Domain III of EF-1. Eukaryotic elongation
factor 1 (EF-1) is responsible for the GTP-dependent
binding of aminoacyl-tRNAs to ribosomes. EF-1 is
composed of four subunits: the alpha chain, which binds
GTP and aminoacyl-tRNAs, the gamma chain that probably
plays a role in anchoring the complex to other cellular
components and the beta and delta (or beta') chains.
This family is the alpha subunit, and represents the
counterpart of bacterial EF-Tu for the archaea (aEF-1
alpha) and eukaryotes (eEF-1 alpha).
Length = 104
Score = 81.1 bits (201), Expect = 4e-21
Identities = 29/95 (30%), Positives = 53/95 (55%)
Query: 30 IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR 89
+++L H I GY+ V+ H ++ ID +TG+K + P+F+K AI++
Sbjct: 10 VIVLNHPGQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVK 69
Query: 90 LEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKV 124
+ + ++ F +P +GRF +RD G+T+A+G V
Sbjct: 70 IVPQKPLVVETFSEYPPLGRFAVRDMGQTVAVGIV 104
>gnl|CDD|129574 TIGR00483, EF-1_alpha, translation elongation factor EF-1 alpha.
This model represents the counterpart of bacterial EF-Tu
for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1
alpha). The trusted cutoff is set fairly high so that
incomplete sequences will score between suggested and
trusted cutoff levels [Protein synthesis, Translation
factors].
Length = 426
Score = 75.3 bits (185), Expect = 5e-17
Identities = 30/99 (30%), Positives = 52/99 (52%)
Query: 30 IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR 89
IV+L+H I GY+ V H H L+ D +TG+ + P+F+K AI++
Sbjct: 325 IVVLQHPGAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVK 384
Query: 90 LEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIV 128
+ + ++ K P +GRF +RD G+T+A G ++ +
Sbjct: 385 FKPTKPMVIEAVKEIPPLGRFAIRDMGQTVAAGMIIDVD 423
>gnl|CDD|217387 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-terminal domain.
Elongation factor Tu consists of three structural
domains, this is the third domain. This domain adopts a
beta barrel structure. This the third domain is involved
in binding to both charged tRNA and binding to EF-Ts
pfam00889.
Length = 91
Score = 68.7 bits (169), Expect = 2e-16
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 19/99 (19%)
Query: 30 IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR 89
+ IL H + I GY V + H G+K FV AI+
Sbjct: 12 VYILNHPTPIFNGYRPVFYCHTADVTGKF--------ILPGKK-----EFVMPGDNAIVT 58
Query: 90 LEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIV 128
+E I +++ + RF +R+ G+T+A+G V +++
Sbjct: 59 VELIKPIAVEKGQ------RFAIREGGRTVAVGVVTEVL 91
>gnl|CDD|238771 cd01513, Translation_factor_III, Domain III of Elongation factor
(EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu
and EF-G participate in the elongation phase during
protein biosynthesis on the ribosome. Their functional
cycles depend on GTP binding and its hydrolysis. The
EF-Tu complexed with GTP and aminoacyl-tRNA delivers
tRNA to the ribosome, whereas EF-G stimulates
translocation, a process in which tRNA and mRNA
movements occur in the ribosome. Experimental data
showed that: (1) intrinsic GTPase activity of EF-G is
influenced by excision of its domain III; (2) that EF-G
lacking domain III has a 1,000-fold decreased GTPase
activity on the ribosome and, a slightly decreased
affinity for GTP; and (3) EF-G lacking domain III does
not stimulate translocation, despite the physical
presence of domain IV which is also very important for
translocation. These findings indicate an essential
contribution of domain III to activation of GTP
hydrolysis. Domains III and V of EF-G have the same fold
(although they are not completely superimposable), the
double split beta-alpha-beta fold. This fold is observed
in a large number of ribonucleotide binding proteins and
is also referred to as the ribonucleoprotein (RNP) or
RNA recognition (RRM) motif. This domain III is found
in several elongation factors, as well as in peptide
chain release factors and in GT-1 family of GTPase
(GTPBP1).
Length = 102
Score = 67.4 bits (165), Expect = 7e-16
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 27 VIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIA 86
V I +L+H + GY V+++ + L+ +D KT + K P F+K +
Sbjct: 7 VAEIYVLDHPEPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKT--EEKKPPEFLKSGERG 64
Query: 87 IMRLEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKV 124
I+ +E + L+ F + GRF LRD G+T+ G +
Sbjct: 65 IVEVELQKPVALETFSENQEGGRFALRDGGRTVGAGLI 102
>gnl|CDD|185474 PTZ00141, PTZ00141, elongation factor 1- alpha; Provisional.
Length = 446
Score = 64.0 bits (156), Expect = 5e-13
Identities = 33/105 (31%), Positives = 59/105 (56%), Gaps = 11/105 (10%)
Query: 30 IVILEHKSIICAGYSAVM-----HIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQ 84
+++L H I GY+ V+ HI C E+ K ID+++G+ + P+ +K
Sbjct: 332 VIVLNHPGQIKNGYTPVLDCHTAHIACKFAEIESK-----IDRRSGKVLEENPKAIKSGD 386
Query: 85 IAIMRLEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129
AI+++ +C++ F +P +GRF +RD +T+A+G V+K VE
Sbjct: 387 AAIVKMVPTKPMCVEVFNEYPPLGRFAVRDMKQTVAVG-VIKSVE 430
>gnl|CDD|165621 PLN00043, PLN00043, elongation factor 1-alpha; Provisional.
Length = 447
Score = 58.9 bits (142), Expect = 3e-11
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 30 IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR 89
++I+ H I GY+ V+ H V ++ ID+++G++ + P+F+K ++
Sbjct: 332 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVK 391
Query: 90 LEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129
+ + ++ F +P +GRF +RD +T+A+G V+K VE
Sbjct: 392 MIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVG-VIKSVE 430
>gnl|CDD|239679 cd03708, GTPBP_III, Domain III of the GP-1 family of GTPase. This
group includes proteins similar to GTPBP1 and GTPBP2.
GTPB1 is structurally, related to elongation factor 1
alpha, a key component of protein biosynthesis
machinery. Immunohistochemical analyses on mouse tissues
revealed that GTPBP1 is expressed in some neurons and
smooth muscle cells of various organs as well as
macrophages. Immunofluorescence analyses revealed that
GTPBP1 is localized exclusively in cytoplasm and shows a
diffuse granular network forming a gradient from the
nucleus to the periphery of the cells in smooth muscle
cell lines and macrophages. No significant difference
was observed in the immune response to protein antigen
between mutant mice and wild-type mice, suggesting
normal function of antigen-presenting cells of the
mutant mice. The absence of an eminent phenotype in
GTPBP1-deficient mice may be due to functional
compensation by GTPBP2, which is similar to GTPBP1 in
structure and tissue distribution.
Length = 87
Score = 43.0 bits (102), Expect = 2e-06
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 26/101 (25%)
Query: 30 IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDK---KTGEKSKTRPRFVKQDQIA 86
I++L H + I GY A +HI + + A I IDK +TG+++ R RF+ +
Sbjct: 10 ILVLHHPTTISPGYQATVHIGSIRQ----TARIVSIDKDVLRTGDRALVRFRFLYHPEY- 64
Query: 87 IMRLEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKI 127
+R R R EG+T +G+V K+
Sbjct: 65 -LREGQ----------------RLIFR-EGRTKGVGEVTKV 87
>gnl|CDD|227583 COG5258, GTPBP1, GTPase [General function prediction only].
Length = 527
Score = 37.4 bits (87), Expect = 7e-04
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 13/69 (18%)
Query: 30 IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDK---KTGEKS------KTRPRFV 80
+++L H + I AGY V H + E V + IDK G++ K RP V
Sbjct: 449 VLVLRHPTTIRAGYEPVFHYETIREAVYFEE----IDKGFLMPGDRGVVRMRFKYRPHHV 504
Query: 81 KQDQIAIMR 89
++ Q + R
Sbjct: 505 EEGQKFVFR 513
>gnl|CDD|232999 TIGR00506, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase.
Several members of the family are bifunctional,
involving both ribA and ribB function. In these cases,
ribA tends to be on the C-terminal end of the protein
and ribB tends to be on the N-terminal [Biosynthesis of
cofactors, prosthetic groups, and carriers, Riboflavin,
FMN, and FAD].
Length = 199
Score = 28.5 bits (64), Expect = 0.83
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 79 FVKQDQIAIMRLEAAGVICL 98
F+ +QIA MR A G+IC+
Sbjct: 38 FITPEQIAFMRRHAGGLICV 57
>gnl|CDD|239677 cd03706, mtEFTU_III, Domain III of mitochondrial EF-TU (mtEF-TU).
mtEF-TU is highly conserved and is 55-60% identical to
bacterial EF-TU. The overall structure is similar to
that observed in the Escherichia coli and Thermus
aquaticus EF-TU. However, compared with that observed in
prokaryotic EF-TU the nucleotide-binding domain (domain
I) of EF-TUmt is in a different orientation relative to
the rest of the structure. Furthermore, domain III is
followed by a short 11-amino acid extension that forms
one helical turn. This extension seems to be specific to
the mitochondrial factors and has not been observed in
any of the prokaryotic factors.
Length = 93
Score = 27.7 bits (62), Expect = 0.90
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 109 RFTLRDEGKTIAIGKVLKI 127
RFTLRD +TI G V
Sbjct: 75 RFTLRDGNRTIGTGLVTDT 93
>gnl|CDD|185370 PRK15473, cbiF, cobalt-precorrin-4 C(11)-methyltransferase;
Provisional.
Length = 257
Score = 27.0 bits (60), Expect = 2.8
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 8 TVKGEGMLWQEQRVIYGPSVIYIVILEHKSIICAGY-SAVMHIHCVAE--EVNVKALICL 64
T+KG +L Q Q VIY S+I +L++ + SA +H+ + + E VKA +
Sbjct: 24 TLKGYRLLQQAQVVIYAGSLINTELLDYCPAQAECHDSAELHLEQIIDLMEAGVKAGKTV 83
Query: 65 IDKKTGEKS 73
+ +TG+ S
Sbjct: 84 VRLQTGDVS 92
>gnl|CDD|234596 PRK00049, PRK00049, elongation factor Tu; Reviewed.
Length = 396
Score = 27.1 bits (61), Expect = 3.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 109 RFTLRDEGKTIAIGKVLKIVE 129
RF +R+ G+T+ G V KI+E
Sbjct: 376 RFAIREGGRTVGAGVVTKIIE 396
>gnl|CDD|146030 pfam03197, FRD2, Bacteriophage FRD2 protein.
Length = 102
Score = 25.9 bits (57), Expect = 3.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 44 SAVMHIHCVAEEVNVKALICLIDK 67
S V IHC+ +E NV +I L+ K
Sbjct: 75 SGVTKIHCIVDENNVDEIIELLRK 98
>gnl|CDD|226833 COG4398, COG4398, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 389
Score = 26.7 bits (59), Expect = 4.2
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 96 ICLDQFKLFPQMGRFTLRD------EGKTIAIGKVLKI 127
I +D+ P G F +R IAIG+V+++
Sbjct: 252 IVVDEHLAAPGQGDFLIRGLLGADPSTGAIAIGEVVRV 289
>gnl|CDD|227731 COG5444, COG5444, Uncharacterized conserved protein [Function
unknown].
Length = 565
Score = 26.7 bits (59), Expect = 4.6
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 39 ICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICL 98
A A + IH A EV +++ L K K + R + + + + G +
Sbjct: 208 YVAKAFAEVTIHKKAAEVALQSETYLDIKTELAKERPDMRDLDKPLESANKTGYEG-LAG 266
Query: 99 DQFKLFPQ 106
+ F
Sbjct: 267 EDIVPFFL 274
>gnl|CDD|223186 COG0108, RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase
[Coenzyme metabolism].
Length = 203
Score = 26.0 bits (58), Expect = 6.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 79 FVKQDQIAIMRLEAAGVICL 98
V +QIA MR A+G+IC+
Sbjct: 39 AVTPEQIAFMRRHASGLICV 58
>gnl|CDD|177010 CHL00071, tufA, elongation factor Tu.
Length = 409
Score = 26.1 bits (58), Expect = 6.4
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 109 RFTLRDEGKTIAIGKVLKIVE 129
RF +R+ G+T+ G V KI++
Sbjct: 389 RFAIREGGRTVGAGVVSKILK 409
>gnl|CDD|180601 PRK06520, PRK06520,
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase; Provisional.
Length = 368
Score = 25.8 bits (57), Expect = 6.7
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 57 NVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRL-EAAGVICLDQFKLFPQMGRFTLRDE 115
+ + ++ LI K GE VK RL EAA + L+Q L PQ G F +E
Sbjct: 294 HQQVVLGLITTKNGELEN--ADDVKA------RLAEAAKFVPLEQLCLSPQCG-FASTEE 344
Query: 116 GKTI 119
G ++
Sbjct: 345 GNSL 348
>gnl|CDD|239762 cd04095, CysN_NoDQ_III, TCysN_NoDQ_II: This subfamily represents
the domain II of the large subunit of ATP sulfurylase
(ATPS): CysN or the N-terminal portion of NodQ, found
mainly in proteobacteria and homologous to the domain II
of EF-Tu. Escherichia coli ATPS consists of CysN and a
smaller subunit CysD and CysN. ATPS produces
adenosine-5'-phosphosulfate (APS) from ATP and sulfate,
coupled with GTP hydrolysis. In the subsequent reaction
APS is phosphorylated by an APS kinase (CysC), to
produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for
use in amino acid (aa) biosynthesis. The Rhizobiaceae
group (alpha-proteobacteria) appears to carry out the
same chemistry for the sufation of a nodulation factor.
In Rhizobium meliloti, a the hererodimeric complex
comprised of NodP and NodQ appears to possess both ATPS
and APS kinase activities. The N and C termini of NodQ
correspond to CysN and CysC, respectively. Other
eubacteria, Archaea, and eukaryotes use a different ATP
sulfurylase, which shows no aa sequence similarity to
CysN or NodQ. CysN and the N-terminal portion of NodQ
show similarity to GTPases involved in translation, in
particular, EF-Tu and EF-1alpha.
Length = 103
Score = 25.2 bits (56), Expect = 7.0
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 58 VKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE-- 115
V A+ +D T E ++ + I + L + + D ++ G F L D
Sbjct: 37 VTAIKYRVDVNTLEHEA--ADTLELNDIGRVELSLSKPLAFDPYRENRATGSFILIDRLT 94
Query: 116 GKTIAIG 122
T+ G
Sbjct: 95 NATVGAG 101
>gnl|CDD|236465 PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II/unknown
domain fusion protein; Provisional.
Length = 555
Score = 26.1 bits (58), Expect = 7.4
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 79 FVKQDQIAIMRLEAAGVICL 98
F + I M EA G+ICL
Sbjct: 41 FATPEMINFMATEARGLICL 60
>gnl|CDD|215592 PLN03126, PLN03126, Elongation factor Tu; Provisional.
Length = 478
Score = 26.1 bits (57), Expect = 7.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 109 RFTLRDEGKTIAIGKVLKIVE 129
RF +R+ GKT+ G + I+E
Sbjct: 458 RFAIREGGKTVGAGVIQSIIE 478
>gnl|CDD|183708 PRK12735, PRK12735, elongation factor Tu; Reviewed.
Length = 396
Score = 25.6 bits (57), Expect = 8.5
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 109 RFTLRDEGKTIAIGKVLKIVE 129
RF +R+ G+T+ G V KI+E
Sbjct: 376 RFAIREGGRTVGAGVVAKIIE 396
>gnl|CDD|178673 PLN03127, PLN03127, Elongation factor Tu; Provisional.
Length = 447
Score = 25.6 bits (56), Expect = 8.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 109 RFTLRDEGKTIAIGKVLKIVE 129
RF LR+ G+T+ G V K++
Sbjct: 427 RFALREGGRTVGAGVVSKVLS 447
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.140 0.414
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,476,246
Number of extensions: 559638
Number of successful extensions: 541
Number of sequences better than 10.0: 1
Number of HSP's gapped: 533
Number of HSP's successfully gapped: 35
Length of query: 129
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 43
Effective length of database: 7,123,158
Effective search space: 306295794
Effective search space used: 306295794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.4 bits)