RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10356
         (129 letters)



>d1f60a2 b.44.1.1 (A:335-441) Elongation factor eEF-1alpha,
           C-terminal domain {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 107

 Score =  107 bits (270), Expect = 2e-32
 Identities = 28/100 (28%), Positives = 56/100 (56%)

Query: 30  IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR 89
           +++L H   I AGYS V+  H          L+   D+++G+K +  P+F+K    A+++
Sbjct: 8   VIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVK 67

Query: 90  LEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129
              +  +C++ F  +P +GRF +RD  +T+A+G +  + +
Sbjct: 68  FVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 107


>d1jnya2 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha,
           C-terminal domain {Archaeon Sulfolobus solfataricus
           [TaxId: 2287]}
          Length = 107

 Score = 93.9 bits (233), Expect = 9e-27
 Identities = 30/98 (30%), Positives = 64/98 (65%)

Query: 30  IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR 89
           I+++ H + +  GY+ V+H+H  +    V  L+  +D +TG++++  P+F+KQ  +AI++
Sbjct: 8   IIVVWHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVK 67

Query: 90  LEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKI 127
            +    +C++++  FP +GRF +RD GKT+ +G ++ +
Sbjct: 68  FKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDV 105


>d1r5ba2 b.44.1.1 (A:555-622) Eukaryotic peptide chain release
          factor ERF2, C-terminal domain {Fission yeast
          (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 68

 Score = 67.5 bits (165), Expect = 8e-17
 Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 30 IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAI 87
          I ILE  SI+  GYS VMHIH   EEV+   L+  +D KT  KSK  P F  +    I
Sbjct: 10 IAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLD-KTNRKSKKPPMFATKGMKII 66


>d1zunb2 b.44.1.1 (B:330-434) Sulfate adenylate transferase subunit
           cysN/C, EF-Tu domain 3-like domain {Pseudomonas syringae
           pv. tomato [TaxId: 323]}
          Length = 105

 Score = 58.9 bits (142), Expect = 3e-13
 Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 30  IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR 89
           +V +  + ++  G    +         ++ ++   +D  T E+       ++ ++I  ++
Sbjct: 10  LVWMAEEPML-PGKKYDIKRATSYVPGSIASITHRVDVNTLEEGP--ASSLQLNEIGRVK 66

Query: 90  LEAAGVICLDQFKLFPQMGRFTLRDE--GKTIAIGKVL 125
           +     I LD +      G F + D     T+A G ++
Sbjct: 67  VSLDAPIALDGYSSNRTTGAFIVIDRLTNGTVAAGMII 104


>d2c78a2 b.44.1.1 (A:313-405) Elongation factor Tu (EF-Tu) {Thermus
           thermophilus [TaxId: 274]}
          Length = 93

 Score = 32.2 bits (73), Expect = 0.004
 Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 12/94 (12%)

Query: 36  KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGV 95
           K      ++     +          +  ++    G +       V         +E    
Sbjct: 12  KKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE------MVMPGDNVTFTVELIKP 65

Query: 96  ICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129
           + L++        RF +R+ G+T+  G V KI+E
Sbjct: 66  VALEEGL------RFAIREGGRTVGAGVVTKILE 93


>d1d2ea2 b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) {Cow (Bos
           taurus), mitochondrial [TaxId: 9913]}
          Length = 103

 Score = 25.3 bits (55), Expect = 1.3
 Identities = 10/21 (47%), Positives = 11/21 (52%)

Query: 109 RFTLRDEGKTIAIGKVLKIVE 129
           RFTLRD  +TI  G V     
Sbjct: 73  RFTLRDGNRTIGTGLVTDTPA 93


>d2iaya1 d.376.1.1 (A:1-113) Hypothetical protein Lp2179
           {Lactobacillus plantarum [TaxId: 1590]}
          Length = 113

 Score = 23.9 bits (52), Expect = 5.4
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 97  CLDQFKLFPQMGRFTLRDEG 116
               + L P + ++TL D G
Sbjct: 12  DTKTYTLSPTVKKYTLMDLG 31


>d1ckva_ d.137.1.1 (A:) Soluble methane monooxygenase regulatory
           protein B {Escherichia coli [TaxId: 562]}
          Length = 141

 Score = 24.1 bits (52), Expect = 5.7
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 67  KKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGR-FTLRD 114
             T  K    P    +D+     ++A G I +D  ++   +GR F + D
Sbjct: 56  LLTDYKKNVNPTVNVEDRAGYWWIKANGKIEVDCDEISELLGRQFNVYD 104


>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase
           subunit I {Thermus thermophilus [TaxId: 274]}
          Length = 549

 Score = 24.2 bits (52), Expect = 6.9
 Identities = 5/39 (12%), Positives = 14/39 (35%), Gaps = 7/39 (17%)

Query: 11  GEGMLWQEQRVIYGPSVIYIVILEHKSIICAGYSAVMHI 49
            + ++ +      G  ++Y  +L         Y+ +  I
Sbjct: 206 VDPLVARTLFWWTGHPIVYFWLL-------PAYAIIYTI 237


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.140    0.414 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 469,889
Number of extensions: 19272
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 12
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.4 bits)