Query psy10357
Match_columns 252
No_of_seqs 150 out of 1585
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 15:50:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5256 TEF1 Translation elong 100.0 4E-57 8.6E-62 396.6 21.6 247 3-252 166-414 (428)
2 PLN00043 elongation factor 1-a 100.0 4.5E-55 9.7E-60 400.9 27.9 247 3-252 168-417 (447)
3 PTZ00141 elongation factor 1- 100.0 4.5E-53 9.8E-58 387.8 29.0 247 3-252 168-417 (446)
4 PRK12317 elongation factor 1-a 100.0 1.7E-52 3.7E-57 383.5 28.2 245 5-252 162-408 (425)
5 TIGR00483 EF-1_alpha translati 100.0 3.6E-52 7.9E-57 381.4 28.9 246 4-252 163-410 (426)
6 KOG0459|consensus 100.0 5.9E-51 1.3E-55 354.7 20.8 248 3-252 240-487 (501)
7 PRK05124 cysN sulfate adenylyl 100.0 4.3E-47 9.4E-52 350.7 28.1 239 4-251 182-422 (474)
8 TIGR02034 CysN sulfate adenyly 100.0 4.7E-47 1E-51 345.2 27.2 238 4-251 155-394 (406)
9 COG2895 CysN GTPases - Sulfate 100.0 1E-45 2.2E-50 317.7 22.3 239 4-252 161-401 (431)
10 PRK05506 bifunctional sulfate 100.0 8E-45 1.7E-49 347.1 28.8 238 4-251 179-418 (632)
11 KOG0458|consensus 100.0 2E-45 4.3E-50 333.1 17.1 249 3-251 336-588 (603)
12 CHL00071 tufA elongation facto 100.0 3.2E-41 6.9E-46 307.3 26.0 234 3-252 148-395 (409)
13 PRK00049 elongation factor Tu; 100.0 5.1E-41 1.1E-45 304.7 26.3 223 4-252 149-382 (396)
14 PLN03126 Elongation factor Tu; 100.0 4.3E-41 9.4E-46 309.9 25.1 234 3-252 217-464 (478)
15 PRK12735 elongation factor Tu; 100.0 1.4E-40 3.1E-45 301.9 25.6 224 3-252 148-382 (396)
16 PRK12736 elongation factor Tu; 100.0 3.9E-39 8.3E-44 292.3 25.0 222 3-252 148-380 (394)
17 TIGR00485 EF-Tu translation el 100.0 1.5E-38 3.3E-43 288.6 25.9 221 4-252 149-380 (394)
18 PLN03127 Elongation factor Tu; 100.0 3.1E-38 6.6E-43 289.5 24.0 224 4-252 198-433 (447)
19 PTZ00327 eukaryotic translatio 100.0 5.8E-33 1.3E-37 254.6 24.0 204 4-251 191-435 (460)
20 KOG0460|consensus 100.0 1.3E-34 2.9E-39 248.0 8.8 227 1-252 188-424 (449)
21 PRK04000 translation initiatio 100.0 5.9E-31 1.3E-35 239.8 23.5 198 7-249 162-394 (411)
22 PRK10512 selenocysteinyl-tRNA- 100.0 2.7E-31 5.8E-36 251.8 21.4 199 4-251 124-325 (614)
23 TIGR03680 eif2g_arch translati 100.0 1.6E-30 3.4E-35 236.9 22.8 199 6-249 156-389 (406)
24 COG5258 GTPBP1 GTPase [General 100.0 6.1E-31 1.3E-35 228.6 18.4 194 23-251 313-514 (527)
25 COG0050 TufB GTPases - transla 100.0 1.4E-30 3E-35 219.7 15.2 224 1-252 146-380 (394)
26 COG3276 SelB Selenocysteine-sp 100.0 8E-29 1.7E-33 219.7 18.0 208 5-237 121-332 (447)
27 TIGR00475 selB selenocysteine- 100.0 3.1E-28 6.6E-33 230.2 20.8 199 5-251 124-324 (581)
28 KOG0463|consensus 99.9 3E-24 6.4E-29 186.8 12.9 185 17-229 326-517 (641)
29 cd03693 EF1_alpha_II EF1_alpha 99.9 2.3E-22 4.9E-27 146.0 10.5 87 69-155 2-90 (91)
30 cd03704 eRF3c_III This family 99.9 9.6E-22 2.1E-26 147.3 11.1 94 159-252 2-96 (108)
31 cd03705 EF1_alpha_III Domain I 99.9 2.5E-21 5.4E-26 144.0 10.8 94 159-252 2-95 (104)
32 cd04093 HBS1_C HBS1_C: this fa 99.9 5.7E-21 1.2E-25 142.8 12.7 94 159-252 2-95 (107)
33 cd04089 eRF3_II eRF3_II: domai 99.9 3E-21 6.4E-26 137.4 10.6 82 71-152 1-82 (82)
34 cd03698 eRF3_II_like eRF3_II_l 99.9 6.8E-21 1.5E-25 135.9 10.6 82 71-152 1-83 (83)
35 cd04095 CysN_NoDQ_III TCysN_No 99.8 2.3E-20 5E-25 138.6 11.9 91 159-252 2-92 (103)
36 cd03694 GTPBP_II Domain II of 99.8 5.5E-20 1.2E-24 132.3 9.5 81 72-152 1-87 (87)
37 cd03697 EFTU_II EFTU_II: Elong 99.8 4.1E-20 8.9E-25 133.0 8.5 83 72-154 1-87 (87)
38 KOG1143|consensus 99.8 5.3E-19 1.1E-23 154.0 16.7 184 20-230 359-554 (591)
39 KOG0461|consensus 99.8 4.1E-20 8.8E-25 159.5 8.8 220 2-240 144-381 (522)
40 cd03695 CysN_NodQ_II CysN_NodQ 99.8 5.3E-19 1.1E-23 125.4 10.8 79 72-152 1-81 (81)
41 cd03696 selB_II selB_II: this 99.8 3.8E-19 8.2E-24 126.9 9.7 81 72-152 1-83 (83)
42 COG5257 GCD11 Translation init 99.8 1.7E-17 3.7E-22 142.2 19.2 195 6-239 162-391 (415)
43 KOG0052|consensus 99.8 8.2E-19 1.8E-23 154.3 9.1 213 24-251 142-358 (391)
44 cd01513 Translation_factor_III 99.8 8.5E-18 1.8E-22 124.3 11.6 92 159-252 2-93 (102)
45 PF03143 GTP_EFTU_D3: Elongati 99.7 1.3E-17 2.8E-22 122.8 10.6 86 156-252 1-86 (99)
46 TIGR01394 TypA_BipA GTP-bindin 99.6 6E-15 1.3E-19 140.0 14.7 146 4-156 135-290 (594)
47 COG0481 LepA Membrane GTPase L 99.6 3E-15 6.5E-20 134.2 11.6 182 24-244 161-348 (603)
48 TIGR01393 lepA GTP-binding pro 99.6 1.9E-14 4.1E-19 136.8 13.2 117 25-156 156-279 (595)
49 PRK10218 GTP-binding protein; 99.6 5.5E-14 1.2E-18 133.4 13.8 142 5-155 140-293 (607)
50 PRK05433 GTP-binding protein L 99.5 1E-13 2.2E-18 132.0 12.8 117 25-156 160-283 (600)
51 cd03688 eIF2_gamma_II eIF2_gam 99.5 7E-13 1.5E-17 97.6 10.8 86 68-153 2-112 (113)
52 COG1217 TypA Predicted membran 99.5 1E-12 2.2E-17 117.9 13.6 143 4-155 139-293 (603)
53 cd03708 GTPBP_III Domain III o 99.4 2E-12 4.3E-17 92.8 9.3 74 159-252 2-76 (87)
54 cd03692 mtIF2_IVc mtIF2_IVc: t 99.4 8E-12 1.7E-16 89.1 11.2 75 74-150 3-82 (84)
55 KOG0462|consensus 99.4 1E-12 2.2E-17 119.9 7.6 128 11-154 199-332 (650)
56 cd03707 EFTU_III Domain III of 99.4 7.1E-12 1.5E-16 90.6 10.2 74 160-252 3-81 (90)
57 cd03706 mtEFTU_III Domain III 99.3 2.1E-11 4.5E-16 88.7 10.7 74 160-252 3-81 (93)
58 KOG0466|consensus 99.2 1.6E-11 3.4E-16 105.2 4.0 194 7-239 202-436 (466)
59 PF03144 GTP_EFTU_D2: Elongati 99.1 2.8E-10 6.2E-15 78.9 8.6 68 84-151 1-74 (74)
60 cd01342 Translation_Factor_II_ 99.1 5.8E-10 1.3E-14 77.6 10.2 78 72-151 1-82 (83)
61 TIGR00487 IF-2 translation ini 99.1 6.7E-10 1.4E-14 105.6 12.5 110 23-152 224-340 (587)
62 TIGR00491 aIF-2 translation in 99.1 2.4E-10 5.2E-15 108.5 9.1 89 22-120 189-283 (590)
63 cd04094 selB_III This family r 99.1 2.5E-09 5.4E-14 78.3 11.2 85 147-252 1-86 (97)
64 PRK04004 translation initiatio 99.0 7.2E-10 1.6E-14 105.5 8.9 103 22-134 191-311 (586)
65 PF14578 GTP_EFTU_D4: Elongati 99.0 5.7E-09 1.2E-13 73.0 10.9 76 70-151 3-80 (81)
66 PRK14845 translation initiatio 99.0 1.9E-09 4E-14 107.5 11.2 103 22-138 646-770 (1049)
67 PRK05306 infB translation init 99.0 3.5E-09 7.7E-14 103.2 12.5 115 22-153 425-543 (787)
68 PRK12740 elongation factor G; 99.0 3.5E-09 7.6E-14 102.7 11.8 117 21-154 234-373 (668)
69 PRK13351 elongation factor G; 98.9 8.5E-09 1.8E-13 100.3 12.5 116 21-154 250-390 (687)
70 cd01883 EF1_alpha Eukaryotic e 98.8 6.3E-09 1.4E-13 87.3 4.8 58 4-64 161-218 (219)
71 PRK00741 prfC peptide chain re 98.8 7.4E-08 1.6E-12 90.7 11.5 117 20-154 245-380 (526)
72 cd04166 CysN_ATPS CysN_ATPS su 98.7 1.1E-08 2.4E-13 85.2 4.6 55 5-64 153-207 (208)
73 CHL00189 infB translation init 98.7 1.3E-07 2.7E-12 91.8 10.3 112 22-152 383-500 (742)
74 PRK07560 elongation factor EF- 98.7 2E-07 4.4E-12 91.2 11.7 82 69-154 288-375 (731)
75 PRK00007 elongation factor G; 98.7 3E-07 6.6E-12 89.5 12.8 116 21-154 252-394 (693)
76 PRK12739 elongation factor G; 98.6 3.3E-07 7.2E-12 89.3 12.4 116 21-154 250-391 (691)
77 TIGR00503 prfC peptide chain r 98.6 4.2E-07 9.1E-12 85.7 11.4 118 20-154 246-381 (527)
78 cd03699 lepA_II lepA_II: This 98.6 8.2E-07 1.8E-11 63.4 10.4 80 72-152 1-86 (86)
79 cd04092 mtEFG2_II_like mtEFG2_ 98.6 5.3E-07 1.1E-11 63.9 9.3 75 74-152 3-83 (83)
80 TIGR00484 EF-G translation elo 98.6 6.7E-07 1.5E-11 87.1 12.6 116 21-154 251-392 (689)
81 cd04088 EFG_mtEFG_II EFG_mtEFG 98.6 8.3E-07 1.8E-11 62.8 9.6 75 74-152 3-83 (83)
82 cd03690 Tet_II Tet_II: This su 98.5 7.5E-07 1.6E-11 63.5 9.0 79 69-152 1-85 (85)
83 cd03691 BipA_TypA_II BipA_TypA 98.5 1.3E-06 2.8E-11 62.3 10.2 77 72-152 1-86 (86)
84 TIGR00490 aEF-2 translation el 98.5 1.3E-06 2.8E-11 85.5 11.6 82 69-154 287-374 (720)
85 cd04091 mtEFG1_II_like mtEFG1_ 98.5 2.2E-06 4.8E-11 60.4 9.6 66 82-152 12-81 (81)
86 cd01884 EF_Tu EF-Tu subfamily. 98.4 1.7E-07 3.6E-12 77.4 2.9 55 3-63 138-193 (195)
87 cd03689 RF3_II RF3_II: this su 98.3 4.2E-06 9.2E-11 59.6 8.2 66 83-152 15-84 (85)
88 COG0480 FusA Translation elong 98.2 2E-05 4.3E-10 76.3 12.3 117 21-154 250-392 (697)
89 KOG1145|consensus 98.0 1.9E-05 4.2E-10 73.0 7.2 98 21-134 288-391 (683)
90 KOG0465|consensus 97.8 9.7E-05 2.1E-09 69.2 8.7 116 21-154 280-421 (721)
91 cd03700 eEF2_snRNP_like_II EF2 97.7 0.00022 4.8E-09 51.6 8.2 66 82-151 14-92 (93)
92 COG4108 PrfC Peptide chain rel 97.5 8.4E-05 1.8E-09 67.3 4.2 118 20-154 247-382 (528)
93 cd04090 eEF2_II_snRNP Loc2 eEF 97.5 0.0011 2.4E-08 47.9 9.0 51 84-134 16-79 (94)
94 TIGR00487 IF-2 translation ini 97.5 0.00051 1.1E-08 65.8 8.6 79 72-152 493-576 (587)
95 CHL00189 infB translation init 97.4 0.00064 1.4E-08 66.5 9.2 82 69-152 647-732 (742)
96 COG0532 InfB Translation initi 97.4 0.00058 1.3E-08 63.3 7.5 98 21-134 142-245 (509)
97 PRK05306 infB translation init 97.4 0.0014 3E-08 64.6 10.4 79 72-152 695-778 (787)
98 COG0532 InfB Translation initi 96.9 0.0055 1.2E-07 57.0 9.3 76 75-152 417-497 (509)
99 TIGR00491 aIF-2 translation in 96.8 0.0075 1.6E-07 57.9 9.4 75 78-153 473-550 (590)
100 PLN00116 translation elongatio 96.8 0.0075 1.6E-07 60.4 9.4 83 69-154 373-471 (843)
101 cd03702 IF2_mtIF2_II This fami 96.5 0.024 5.2E-07 41.1 8.4 72 75-152 4-79 (95)
102 cd03703 aeIF5B_II aeIF5B_II: T 96.3 0.052 1.1E-06 40.4 9.3 76 74-151 3-93 (110)
103 PRK04004 translation initiatio 96.3 0.023 4.9E-07 54.6 9.0 74 78-152 475-551 (586)
104 KOG1144|consensus 96.1 0.0051 1.1E-07 59.3 3.5 100 21-134 659-793 (1064)
105 cd03701 IF2_IF5B_II IF2_IF5B_I 96.0 0.061 1.3E-06 39.0 8.2 71 75-150 4-77 (95)
106 PTZ00416 elongation factor 2; 96.0 0.069 1.5E-06 53.5 11.0 82 70-154 370-467 (836)
107 PRK14845 translation initiatio 95.8 0.038 8.2E-07 56.2 8.5 75 78-153 931-1008(1049)
108 KOG1144|consensus 93.6 0.17 3.8E-06 49.2 6.2 61 78-139 944-1008(1064)
109 PF09173 eIF2_C: Initiation fa 92.5 1.1 2.4E-05 32.0 7.5 44 174-239 25-68 (88)
110 KOG0469|consensus 92.3 0.17 3.7E-06 47.2 4.1 82 67-150 373-470 (842)
111 cd01891 TypA_BipA TypA (tyrosi 89.4 0.24 5.1E-06 40.3 2.1 36 6-41 138-174 (194)
112 KOG0468|consensus 76.9 9.5 0.00021 37.3 7.1 84 68-154 469-568 (971)
113 KOG1145|consensus 74.7 4.5 9.8E-05 38.5 4.3 66 86-153 598-667 (683)
114 TIGR00998 8a0101 efflux pump m 73.7 38 0.00081 29.8 9.9 66 83-150 212-279 (334)
115 TIGR01730 RND_mfp RND family e 66.8 68 0.0015 27.7 10.0 106 83-190 142-248 (322)
116 TIGR00999 8a0102 Membrane Fusi 62.1 95 0.0021 26.1 10.3 90 96-190 110-200 (265)
117 COG1326 Uncharacterized archae 62.0 19 0.0004 29.5 4.9 57 95-154 74-131 (201)
118 cd04158 ARD1 ARD1 subfamily. 60.8 8.7 0.00019 30.1 2.9 19 22-40 134-152 (169)
119 TIGR03630 arch_S17P archaeal r 59.4 36 0.00078 25.0 5.5 52 83-134 26-84 (102)
120 KOG0464|consensus 56.6 8.6 0.00019 35.4 2.4 115 21-153 290-418 (753)
121 PRK09783 copper/silver efflux 54.9 1.7E+02 0.0037 26.8 10.7 72 117-189 251-322 (409)
122 PRK15136 multidrug efflux syst 53.7 1.8E+02 0.0038 26.5 10.9 73 117-189 257-348 (390)
123 PF13437 HlyD_3: HlyD family s 52.9 80 0.0017 22.4 9.0 82 96-179 21-105 (105)
124 COG0186 RpsQ Ribosomal protein 50.3 56 0.0012 23.2 5.1 52 83-135 7-65 (87)
125 TIGR03594 GTPase_EngA ribosome 48.0 13 0.00028 34.0 2.2 18 23-40 318-335 (429)
126 PRK15467 ethanolamine utilizat 47.9 7.5 0.00016 30.4 0.6 17 24-40 122-138 (158)
127 PRK03598 putative efflux pump 47.3 1.6E+02 0.0036 25.8 9.1 90 96-187 225-325 (331)
128 cd04152 Arl4_Arl7 Arl4/Arl7 su 46.4 18 0.00039 28.7 2.6 18 23-40 144-161 (183)
129 KOG0467|consensus 45.4 48 0.001 33.0 5.5 68 68-135 356-441 (887)
130 cd04142 RRP22 RRP22 subfamily. 44.6 5.9 0.00013 32.3 -0.5 18 23-40 148-165 (198)
131 cd04167 Snu114p Snu114p subfam 41.8 17 0.00036 29.8 1.8 37 6-50 155-191 (213)
132 TIGR01000 bacteriocin_acc bact 40.5 3.1E+02 0.0066 25.5 11.1 106 84-189 325-441 (457)
133 PTZ00099 rab6; Provisional 40.3 12 0.00026 29.9 0.6 18 23-40 116-133 (176)
134 COG1160 Predicted GTPases [Gen 37.8 21 0.00046 33.1 1.9 33 3-40 310-342 (444)
135 PF03829 PTSIIA_gutA: PTS syst 37.3 56 0.0012 24.5 3.8 26 91-118 47-72 (117)
136 COG5341 Uncharacterized protei 36.5 53 0.0012 24.9 3.5 32 90-121 93-125 (132)
137 cd04128 Spg1 Spg1p. Spg1p (se 35.6 20 0.00044 28.6 1.3 18 23-40 140-157 (182)
138 cd04144 Ras2 Ras2 subfamily. 35.3 12 0.00026 30.0 -0.1 17 24-40 138-154 (190)
139 TIGR00436 era GTP-binding prot 35.2 20 0.00044 30.7 1.3 16 25-40 140-155 (270)
140 cd04134 Rho3 Rho3 subfamily. 33.5 24 0.00053 28.2 1.4 18 23-40 148-165 (189)
141 PRK00093 GTP-binding protein D 33.1 26 0.00057 32.1 1.8 18 23-40 318-335 (435)
142 cd04126 Rab20 Rab20 subfamily. 31.6 17 0.00037 30.3 0.2 17 24-40 165-181 (220)
143 COG0511 AccB Biotin carboxyl c 30.7 2.5E+02 0.0054 21.6 6.8 59 89-152 79-137 (140)
144 KOG0092|consensus 29.9 37 0.00079 28.0 1.9 20 21-40 139-158 (200)
145 PRK10377 PTS system glucitol/s 29.3 1E+02 0.0022 23.3 4.0 55 93-153 49-104 (120)
146 PF12700 HlyD_2: HlyD family s 28.5 1.8E+02 0.0038 25.1 6.2 96 95-195 180-276 (328)
147 PRK08572 rps17p 30S ribosomal 28.5 1.7E+02 0.0036 21.7 4.9 50 83-134 28-86 (108)
148 COG0482 TrmU Predicted tRNA(5- 27.5 1.7E+02 0.0037 26.5 5.8 99 123-225 231-340 (356)
149 PF14001 YdfZ: YdfZ protein 27.3 1E+02 0.0022 20.5 3.3 40 95-134 9-48 (64)
150 PRK02888 nitrous-oxide reducta 27.3 4.2E+02 0.0092 26.0 8.7 53 93-152 532-586 (635)
151 TIGR00849 gutA PTS system, glu 27.1 1.1E+02 0.0023 23.2 3.9 55 94-154 50-105 (121)
152 PRK09435 membrane ATPase/prote 27.0 39 0.00083 30.3 1.7 17 24-40 235-251 (332)
153 cd00877 Ran Ran (Ras-related n 26.9 37 0.00081 26.4 1.4 20 21-40 131-150 (166)
154 cd04143 Rhes_like Rhes_like su 25.9 38 0.00082 28.7 1.4 18 23-40 145-162 (247)
155 PRK03598 putative efflux pump 25.9 4.3E+02 0.0093 23.1 8.2 41 162-202 239-283 (331)
156 cd04147 Ras_dva Ras-dva subfam 25.8 28 0.0006 28.0 0.5 18 23-40 137-154 (198)
157 cd04112 Rab26 Rab26 subfamily. 25.7 42 0.00091 26.8 1.6 17 24-40 138-154 (191)
158 TIGR01843 type_I_hlyD type I s 25.6 4.9E+02 0.011 23.3 11.9 103 84-187 280-398 (423)
159 PRK15494 era GTPase Era; Provi 25.4 36 0.00077 30.4 1.2 17 24-40 191-207 (339)
160 cd04109 Rab28 Rab28 subfamily. 25.4 43 0.00094 27.4 1.6 17 24-40 141-157 (215)
161 cd01875 RhoG RhoG subfamily. 25.0 35 0.00076 27.3 1.0 17 24-40 152-168 (191)
162 PRK15452 putative protease; Pr 23.7 6.1E+02 0.013 23.7 9.1 44 94-137 381-428 (443)
163 cd04129 Rho2 Rho2 subfamily. 23.7 44 0.00095 26.6 1.3 17 24-40 148-164 (187)
164 cd04493 BRCA2DBD_OB1 BRCA2DBD_ 23.7 1E+02 0.0023 22.5 3.1 41 90-137 45-85 (100)
165 PRK03003 GTP-binding protein D 23.3 55 0.0012 30.6 2.1 17 24-40 357-373 (472)
166 cd04107 Rab32_Rab38 Rab38/Rab3 23.2 49 0.0011 26.6 1.5 17 24-40 143-159 (201)
167 smart00785 AARP2CN AARP2CN (NU 22.8 1.9E+02 0.0041 20.1 4.3 67 54-121 5-81 (83)
168 PTZ00241 40S ribosomal protein 22.6 2.3E+02 0.0051 22.4 5.1 50 83-134 67-125 (158)
169 cd04121 Rab40 Rab40 subfamily. 22.3 37 0.0008 27.4 0.6 18 23-40 141-158 (189)
170 PTZ00369 Ras-like protein; Pro 22.2 31 0.00068 27.5 0.2 18 23-40 141-158 (189)
171 PF03473 MOSC: MOSC domain; I 21.8 1.6E+02 0.0034 22.0 4.0 19 86-104 115-133 (133)
172 PRK09866 hypothetical protein; 21.8 58 0.0013 32.1 1.9 16 24-39 328-343 (741)
173 KOG1423|consensus 21.7 65 0.0014 28.8 2.0 17 25-41 247-263 (379)
174 COG1159 Era GTPase [General fu 21.5 49 0.0011 29.1 1.2 16 25-40 148-163 (298)
175 TIGR00999 8a0102 Membrane Fusi 21.4 4.8E+02 0.01 21.7 8.3 55 176-230 139-199 (265)
176 PRK07051 hypothetical protein; 21.3 2.2E+02 0.0048 19.3 4.3 23 127-151 54-76 (80)
177 PF05354 Phage_attach: Phage H 21.1 3.2E+02 0.0068 20.6 5.2 54 101-154 26-85 (117)
178 COG0013 AlaS Alanyl-tRNA synth 20.7 1.3E+02 0.0029 30.6 4.1 35 71-105 518-554 (879)
179 cd00565 ThiS ThiaminS ubiquiti 20.6 83 0.0018 20.5 2.0 53 44-106 7-60 (65)
180 cd01855 YqeH YqeH. YqeH is an 20.0 52 0.0011 26.2 1.1 16 25-40 101-116 (190)
No 1
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-57 Score=396.63 Aligned_cols=247 Identities=32% Similarity=0.583 Sum_probs=237.4
Q ss_pred hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc-
Q psy10357 3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK- 81 (252)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~- 81 (252)
|+++.+++.+++.+++ .+++++||||||++|+|+.+.+ ++++||+||||+++||.+++|.+..++|||++|+++|+
T Consensus 166 ~ei~~~v~~l~k~~G~-~~~~v~FIPiSg~~G~Nl~~~s--~~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~~v~~i 242 (428)
T COG5256 166 EEIVSEVSKLLKMVGY-NPKDVPFIPISGFKGDNLTKKS--ENMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQDVYSI 242 (428)
T ss_pred HHHHHHHHHHHHHcCC-CccCCeEEecccccCCcccccC--cCCcCccCChHHHHHhccCCCCCCCCCCeEeEeeeEEEe
Confidence 5678888887777776 6778999999999999999987 89999999999999999999999999999999999995
Q ss_pred -CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCccee
Q psy10357 82 -DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTA 160 (252)
Q Consensus 82 -g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~ 160 (252)
|.|+++.|+|++|.|++||+|+++|.+...+|+||++++++.+.|.+||+|++++++++..||++||+++++++|+..+
T Consensus 243 ~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n~~t~s 322 (428)
T COG5256 243 SGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSDNPPTVS 322 (428)
T ss_pred cCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCCCCcccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCC
Q psy10357 161 RVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKL 240 (252)
Q Consensus 161 ~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~ 240 (252)
.+|.|+|.++.++..|.+||++++|+|+.+++|++.+|+.++|++||+..+..|.|++.|+.++|++++.+|+|++.+++
T Consensus 323 ~~f~a~i~vl~~p~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~t~k~~~~~p~f~k~g~~~iv~i~~~kP~~~e~~~~ 402 (428)
T COG5256 323 PEFTAQIIVLWHPGIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAAIVKIEPEKPLCLEKVSE 402 (428)
T ss_pred cceEEEEEEEecCccccCCCccEEEecccceeeeHHHHHHhhCcccccccccChhhhhcCceEEEEEEecCceEeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEeC
Q psy10357 241 FPQMGRFTLRDE 252 (252)
Q Consensus 241 ~~~lgrfilrd~ 252 (252)
++.||||+|||.
T Consensus 403 ~~~Lgrfalrd~ 414 (428)
T COG5256 403 IPQLGRFALRDM 414 (428)
T ss_pred CCccceEEEEeC
Confidence 999999999983
No 2
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=4.5e-55 Score=400.89 Aligned_cols=247 Identities=25% Similarity=0.511 Sum_probs=233.3
Q ss_pred hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc-
Q psy10357 3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK- 81 (252)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~- 81 (252)
+.+..+++.+++++++ +.++++|||+||++|+|+.+.+ ..++||+||||+++|+.+++|.+..+.||||+|+++|+
T Consensus 168 ~~i~~ei~~~l~~~g~-~~~~~~~ipiSa~~G~ni~~~~--~~~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~~v~~~ 244 (447)
T PLN00043 168 DEIVKEVSSYLKKVGY-NPDKIPFVPISGFEGDNMIERS--TNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKI 244 (447)
T ss_pred HHHHHHHHHHHHHcCC-CcccceEEEEeccccccccccc--cCCcccchHHHHHHHhhcCCCccccCCCcEEEEEEEEEe
Confidence 3457788889998886 5678999999999999998876 67999999999999999999999899999999999996
Q ss_pred -CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCC-CCCcce
Q psy10357 82 -DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDP-NNPART 159 (252)
Q Consensus 82 -g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~-~~~~~~ 159 (252)
|.|++++|+|++|.+++||.|.++|++..++|+||+.++.++++|.|||+|++.|++++..+++||++||++ +.|+..
T Consensus 245 ~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~~~~~p~~~ 324 (447)
T PLN00043 245 GGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKE 324 (447)
T ss_pred CCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEccCCCCCCcc
Confidence 889999999999999999999999999999999999999999999999999999999988999999999997 567788
Q ss_pred ecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecC
Q psy10357 160 ARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFK 239 (252)
Q Consensus 160 ~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~ 239 (252)
+++|+|+|.||+++.++.+||++++|+|+.+++|+|.+|.+++|.+||+..+.+|++|++||.|.|+|++++|+|+|+|+
T Consensus 325 ~~~F~A~i~~l~~~~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~~~~a~v~i~~~~pi~~e~~~ 404 (447)
T PLN00043 325 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFS 404 (447)
T ss_pred ccEEEEEEEEECCCCCCCCCCeEEEEEccCEEEEEEEEeEEEeccCCccccccCcccccCCCEEEEEEEECCcEEEEecc
Confidence 99999999999999999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred CCCCceeEEEEeC
Q psy10357 240 LFPQMGRFTLRDE 252 (252)
Q Consensus 240 ~~~~lgrfilrd~ 252 (252)
+++.||||+|||.
T Consensus 405 ~~~~lGrf~lrd~ 417 (447)
T PLN00043 405 EYPPLGRFAVRDM 417 (447)
T ss_pred cCCCCceEEEEEC
Confidence 9999999999985
No 3
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=4.5e-53 Score=387.79 Aligned_cols=247 Identities=28% Similarity=0.541 Sum_probs=232.1
Q ss_pred hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc-
Q psy10357 3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK- 81 (252)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~- 81 (252)
+.++.+++.+|+.+++ ..+++||||+||++|+|+.+++ ..++||+||+|+++|+.+++|.+..++||||+|+++|+
T Consensus 168 ~~i~~~i~~~l~~~g~-~~~~~~~ipiSa~~g~ni~~~~--~~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~~v~~v 244 (446)
T PTZ00141 168 DEIKKEVSAYLKKVGY-NPEKVPFIPISGWQGDNMIEKS--DNMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQDVYKI 244 (446)
T ss_pred HHHHHHHHHHHHhcCC-CcccceEEEeecccCCCcccCC--CCCcccchHHHHHHHhCCCCCCcCCCCCeEEEEEEEEec
Confidence 4567788888888876 4568999999999999998877 78999999999999999988888889999999999996
Q ss_pred -CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCC-CCcce
Q psy10357 82 -DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN-NPART 159 (252)
Q Consensus 82 -g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~-~~~~~ 159 (252)
|.|++++|+|++|.|++||+|.++|++..++|++|+.+++++++|.|||+|+++|++++..+++|||+||+++ .|+..
T Consensus 245 ~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~~~~p~~~ 324 (446)
T PTZ00141 245 GGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDSKNDPAKE 324 (446)
T ss_pred CCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecCCCCCCcc
Confidence 8899999999999999999999999999999999999999999999999999999999889999999999985 56677
Q ss_pred ecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecC
Q psy10357 160 ARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFK 239 (252)
Q Consensus 160 ~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~ 239 (252)
+++|+|+|.||+++.++.+||++++|+|+.+++|+|..|.+++|.+|++..+.+|++|++|+.+.|+|++++|+|+++|+
T Consensus 325 ~~~f~a~i~~l~~~~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi~~e~~~ 404 (446)
T PTZ00141 325 CADFTAQVIVLNHPGQIKNGYTPVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSGDAAIVKMVPTKPMCVEVFN 404 (446)
T ss_pred ceEEEEEEEEECCCCccCCCCeEEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCceEEeecc
Confidence 89999999999998889999999999999999999999999999999988888899999999999999999999999999
Q ss_pred CCCCceeEEEEeC
Q psy10357 240 LFPQMGRFTLRDE 252 (252)
Q Consensus 240 ~~~~lgrfilrd~ 252 (252)
+++.||||+|||.
T Consensus 405 ~~~~lgrfilrd~ 417 (446)
T PTZ00141 405 EYPPLGRFAVRDM 417 (446)
T ss_pred cCCCCccEEEEEC
Confidence 9999999999984
No 4
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=1.7e-52 Score=383.52 Aligned_cols=245 Identities=30% Similarity=0.542 Sum_probs=230.6
Q ss_pred HHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc--C
Q psy10357 5 VKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK--D 82 (252)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~--g 82 (252)
+..++.++++.+++ ..++++++|+||++|+|+.+++ .+++||+|++|+++|+.+++|.+..++||||+|+++|+ |
T Consensus 162 ~~~~i~~~l~~~g~-~~~~~~ii~iSA~~g~gi~~~~--~~~~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~~~~~~~g 238 (425)
T PRK12317 162 VKEEVSKLLKMVGY-KPDDIPFIPVSAFEGDNVVKKS--ENMPWYNGPTLLEALDNLKPPEKPTDKPLRIPIQDVYSISG 238 (425)
T ss_pred HHHHHHHHHHhhCC-CcCcceEEEeecccCCCccccc--cCCCcccHHHHHHHHhcCCCCccccCCCcEEEEEEEEeeCC
Confidence 45677777777765 4456899999999999999987 78999999999999999999888889999999999996 8
Q ss_pred CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceecE
Q psy10357 83 MGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARV 162 (252)
Q Consensus 83 ~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~ 162 (252)
.|++++|+|++|+|++||.|.++|++..++|+||+.+++++++|.|||+|+++|++++..++++|++||++++++..+++
T Consensus 239 ~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~~~~~~~~~ 318 (425)
T PRK12317 239 VGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPDNPPTVAEE 318 (425)
T ss_pred CeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCCCCCCCcccE
Confidence 89999999999999999999999999999999999999999999999999999999988999999999999887888999
Q ss_pred EEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCCC
Q psy10357 163 FDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFP 242 (252)
Q Consensus 163 f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~ 242 (252)
|+|+|.|++++.++.+||++++|+|+.+++|+|+.|.+.+|.+|++..+.+|++|++||.|.|+|++++|+|+++|++++
T Consensus 319 f~a~v~~l~~~~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~~p~~~~~~~~~~ 398 (425)
T PRK12317 319 FTAQIVVLQHPSAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPTKPLVIEKVKEIP 398 (425)
T ss_pred EEEEEEEECCCCcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCeeEEEeCCcCC
Confidence 99999999998889999999999999999999999999999999988888899999999999999999999999999999
Q ss_pred CceeEEEEeC
Q psy10357 243 QMGRFTLRDE 252 (252)
Q Consensus 243 ~lgrfilrd~ 252 (252)
.||||+|||.
T Consensus 399 ~lgrfilr~~ 408 (425)
T PRK12317 399 QLGRFAIRDM 408 (425)
T ss_pred CCccEEEEEC
Confidence 9999999984
No 5
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=3.6e-52 Score=381.40 Aligned_cols=246 Identities=29% Similarity=0.530 Sum_probs=231.7
Q ss_pred hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc--
Q psy10357 4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK-- 81 (252)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~-- 81 (252)
.++.++..++++++. ..++++|+|+||++|+|+.+.. ..++||+|++|+++|+.+++|.+..+.||||+|+++|+
T Consensus 163 ~~~~ei~~~~~~~g~-~~~~~~~i~iSA~~g~ni~~~~--~~~~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v~~~~ 239 (426)
T TIGR00483 163 AIKKEVSNLIKKVGY-NPDTVPFIPISAWNGDNVIKKS--ENTPWYKGKTLLEALDALEPPEKPTDKPLRIPIQDVYSIT 239 (426)
T ss_pred HHHHHHHHHHHHcCC-CcccceEEEeeccccccccccc--cCCccccchHHHHHHhcCCCCCCccCCCcEEEEEEEEecC
Confidence 456778888887775 4567899999999999999887 77999999999999999998888889999999999996
Q ss_pred CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceec
Q psy10357 82 DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTAR 161 (252)
Q Consensus 82 g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~ 161 (252)
|.|++++|+|++|.+++||.|.++|.+..++|+||+.+++++++|.|||+|+++|++++..++++|++|++++.|++.++
T Consensus 240 g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~~~~~~~~ 319 (426)
T TIGR00483 240 GVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDNPPKVAK 319 (426)
T ss_pred CCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecCCCCCceee
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999987788899
Q ss_pred EEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCC
Q psy10357 162 VFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLF 241 (252)
Q Consensus 162 ~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~ 241 (252)
+|+|+|.||+++.++.+||++++|+|+.+++|+|+.|...+|+++++..+.+|++|++||.+.|+|++++|+|+++|+++
T Consensus 320 ~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi~~e~~~~~ 399 (426)
T TIGR00483 320 EFTAQIVVLQHPGAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKPMVIEAVKEI 399 (426)
T ss_pred EEEEEEEEECCCCccCCCCeEEEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCCEEEEEEEECCeeEEeecccC
Confidence 99999999999889999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred CCceeEEEEeC
Q psy10357 242 PQMGRFTLRDE 252 (252)
Q Consensus 242 ~~lgrfilrd~ 252 (252)
+.||||+|||.
T Consensus 400 ~~~grf~lr~~ 410 (426)
T TIGR00483 400 PPLGRFAIRDM 410 (426)
T ss_pred CCCccEEEEEC
Confidence 99999999984
No 6
>KOG0459|consensus
Probab=100.00 E-value=5.9e-51 Score=354.67 Aligned_cols=248 Identities=58% Similarity=0.956 Sum_probs=237.6
Q ss_pred hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEcC
Q psy10357 3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKD 82 (252)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~g 82 (252)
++.+.+++.||.++++-.-.++.|+|+||++|.|+.+... ..++||.||++++.|+.+|..+|..+.||||+|.+.|++
T Consensus 240 ~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~-s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~pI~~Kykd 318 (501)
T KOG0459|consen 240 EECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD-SVCPWYKGPIFLEYLDELPHLERILNGPIRCPVANKYKD 318 (501)
T ss_pred HHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc-ccCCcccCCccceehhccCcccccCCCCEEeehhhhccc
Confidence 5678899999999998556778999999999999988753 579999999999999999999999999999999999999
Q ss_pred CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceecE
Q psy10357 83 MGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARV 162 (252)
Q Consensus 83 ~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~ 162 (252)
.||++.|++++|+++.||.++++|.+..+.|.+|...+.+++.+.+||++.|.|+|++..||..|.+||++++|..+.+.
T Consensus 319 mGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~~n~~~s~~~ 398 (501)
T KOG0459|consen 319 MGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSPNNPCKSGRT 398 (501)
T ss_pred cceEEEEEecccceecCCeEEEccCCcceEEEEEecccceeeeccCCcceEEEecccchhhccCceEEecCCCccccccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCCC
Q psy10357 163 FDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFP 242 (252)
Q Consensus 163 f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~ 242 (252)
|+|+|.++.++.-|.+||.++||+|+....|.| +++..+|++||++.+.+|+|++.|+.++++|+...|||+++|++++
T Consensus 399 F~aqi~IlE~~sIi~~GY~~VlHIht~ieEv~i-~li~~idkktg~ksKkrprFvkq~~~~iarl~t~~~iCle~fkd~p 477 (501)
T KOG0459|consen 399 FDAQIVILEHKSIICAGYSCVLHIHTAVEEVEI-KLIHLIDKKTGEKSKKRPRFVKQGQKCIARLETEGPICLETFKDYP 477 (501)
T ss_pred EEEEEEEEecCceeccCcceEeeeeeehhheee-eeeeeecccccccccCCCeeecCCcEEEEEEecCCcEehhhcccch
Confidence 999999999999899999999999999999999 6779999999999999999999999999999999999999999999
Q ss_pred CceeEEEEeC
Q psy10357 243 QMGRFTLRDE 252 (252)
Q Consensus 243 ~lgrfilrd~ 252 (252)
++|||.|||+
T Consensus 478 qmgRFtLRde 487 (501)
T KOG0459|consen 478 QMGRFTLRDE 487 (501)
T ss_pred hhcceEEecC
Confidence 9999999996
No 7
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=4.3e-47 Score=350.66 Aligned_cols=239 Identities=18% Similarity=0.244 Sum_probs=214.9
Q ss_pred hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEcC-
Q psy10357 4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKD- 82 (252)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~g- 82 (252)
.++.++..+++.+++ ...++|||+||++|+|+.+++ +.++||+|+||+++|+.+++|.+..+.||||+|+++|+.
T Consensus 182 ~i~~~l~~~~~~~~~--~~~~~iipvSA~~g~ni~~~~--~~~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~~~ 257 (474)
T PRK05124 182 RIREDYLTFAEQLPG--NLDIRFVPLSALEGDNVVSQS--ESMPWYSGPTLLEVLETVDIQRVVDAQPFRFPVQYVNRPN 257 (474)
T ss_pred HHHHHHHHHHHhcCC--CCCceEEEEEeecCCCccccc--ccccccchhhHHHHHhhcCCCCCCCCCCceeeEEEEEecC
Confidence 344555566666653 246799999999999999887 789999999999999999988888899999999999862
Q ss_pred -CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceec
Q psy10357 83 -MGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTAR 161 (252)
Q Consensus 83 -~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~ 161 (252)
....+.|+|++|.|++||+|.++|.++.++|++|+.++.++++|.|||+|+++|+ +..++++||+||+++.++..++
T Consensus 258 ~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aG~~V~l~L~--~~~~i~rG~VL~~~~~~~~~~~ 335 (474)
T PRK05124 258 LDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFDGDLEEAFAGEAITLVLE--DEIDISRGDLLVAADEALQAVQ 335 (474)
T ss_pred CcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEcCccccCcCCCCEEEEEeC--CccccCCccEEECCCCCCccce
Confidence 2233789999999999999999999999999999999999999999999999998 4678999999999988778899
Q ss_pred EEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCC
Q psy10357 162 VFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLF 241 (252)
Q Consensus 162 ~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~ 241 (252)
.|+|++.||+ +.+|.+|+++.+|+|+.+++|+|..|.+++|.+||++. +|++|++|+.+.|+|++++|+|+++|+++
T Consensus 336 ~f~a~i~~l~-~~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~~--~~~~l~~g~~a~v~l~~~~pv~~e~~~~~ 412 (474)
T PRK05124 336 HASADVVWMA-EQPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQR--EAENLPLNGIGLVELTFDEPLVLDPYQQN 412 (474)
T ss_pred EEEEEEEEeC-CcccCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCccc--CccccCCCCEEEEEEEECCeeccccCCcC
Confidence 9999999998 56799999999999999999999999999999999864 46899999999999999999999999999
Q ss_pred CCceeEEEEe
Q psy10357 242 PQMGRFTLRD 251 (252)
Q Consensus 242 ~~lgrfilrd 251 (252)
++||||+|||
T Consensus 413 ~~lGRfil~d 422 (474)
T PRK05124 413 RVTGGFIFID 422 (474)
T ss_pred CcceeEEEEE
Confidence 9999999976
No 8
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=4.7e-47 Score=345.18 Aligned_cols=238 Identities=20% Similarity=0.285 Sum_probs=216.5
Q ss_pred hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc--
Q psy10357 4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK-- 81 (252)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~-- 81 (252)
.++.++..+++++++ .+++|+|+||++|+|+.+++ +.++||+||||+++|+.++.|.+..+.||||+|+++|+
T Consensus 155 ~i~~~~~~~~~~~~~---~~~~iipiSA~~g~ni~~~~--~~~~wy~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~~~~ 229 (406)
T TIGR02034 155 NIKKDYLAFAEQLGF---RDVTFIPLSALKGDNVVSRS--ESMPWYSGPTLLEILETVEVERDAQDLPLRFPVQYVNRPN 229 (406)
T ss_pred HHHHHHHHHHHHcCC---CCccEEEeecccCCCCcccc--cCCCccchhHHHHHHHhcCCCCCcCCCCcccceEEEeecC
Confidence 345566666666665 46899999999999999887 78999999999999999998888889999999999985
Q ss_pred CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceec
Q psy10357 82 DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTAR 161 (252)
Q Consensus 82 g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~ 161 (252)
..+..+.|+|++|.+++||.|.++|.+..++|++|++++.++++|.|||+|+++|+ +..++++|++||+++.++..++
T Consensus 230 ~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~~G~~v~l~l~--~~~~i~rG~vl~~~~~~~~~~~ 307 (406)
T TIGR02034 230 LDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFDGDLEQARAGQAVTLTLD--DEIDISRGDLLAAADSAPEVAD 307 (406)
T ss_pred CCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEECCcccCEeCCCCEEEEEEC--CccccCCccEEEcCCCCCCcce
Confidence 23344789999999999999999999999999999999999999999999999998 4678999999999988788899
Q ss_pred EEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCC
Q psy10357 162 VFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLF 241 (252)
Q Consensus 162 ~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~ 241 (252)
.|+|++.|+++ .+|.+|+++++|+|+.+++|+|..|.+.+|.+||++. +++++++|+.+.|+|++++|+|+++|+++
T Consensus 308 ~f~a~i~~l~~-~~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~~--~~~~l~~~~~~~v~l~~~~p~~~~~~~~~ 384 (406)
T TIGR02034 308 QFAATLVWMAE-EPLLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEKG--AAKSLELNEIGRVNLSLDEPIAFDPYAEN 384 (406)
T ss_pred EEEEEEEEeCh-hhcCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCccc--CCcccCCCCEEEEEEEECCeeccCcccCC
Confidence 99999999985 5799999999999999999999999999999999865 46999999999999999999999999999
Q ss_pred CCceeEEEEe
Q psy10357 242 PQMGRFTLRD 251 (252)
Q Consensus 242 ~~lgrfilrd 251 (252)
++||||+|||
T Consensus 385 ~~lGr~~l~d 394 (406)
T TIGR02034 385 RTTGAFILID 394 (406)
T ss_pred CcceeEEEEE
Confidence 9999999965
No 9
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-45 Score=317.74 Aligned_cols=239 Identities=21% Similarity=0.328 Sum_probs=219.7
Q ss_pred hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc-C
Q psy10357 4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK-D 82 (252)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~-g 82 (252)
.+..+...|.++|+. ..+.+||+||+.|+|+...+ +.||||+||||++.|+.+........+||||||+.+.+ +
T Consensus 161 ~I~~dy~~fa~~L~~---~~~~~IPiSAl~GDNV~~~s--~~mpWY~GptLLe~LE~v~i~~~~~~~~~RfPVQ~V~Rp~ 235 (431)
T COG2895 161 AIVADYLAFAAQLGL---KDVRFIPISALLGDNVVSKS--ENMPWYKGPTLLEILETVEIADDRSAKAFRFPVQYVNRPN 235 (431)
T ss_pred HHHHHHHHHHHHcCC---CcceEEechhccCCcccccc--cCCCcccCccHHHHHhhccccccccccceeeceEEecCCC
Confidence 344555667788886 55599999999999999988 99999999999999999988777778899999999986 2
Q ss_pred -CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceec
Q psy10357 83 -MGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTAR 161 (252)
Q Consensus 83 -~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~ 161 (252)
.-+-+.|+|.+|++++||.|.++|+++..+|+.|..++.++++|.+|+.|++.|. +..|++|||+|++.+.++.+++
T Consensus 236 ~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg~~~~A~aG~aVtl~L~--deidisRGd~i~~~~~~~~~~~ 313 (431)
T COG2895 236 LDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDGELAQASAGEAVTLVLA--DEIDISRGDLIVAADAPPAVAD 313 (431)
T ss_pred CcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCCchhhccCCceEEEEEc--ceeecccCcEEEccCCCcchhh
Confidence 2466899999999999999999999999999999999999999999999999999 8899999999999999999999
Q ss_pred EEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCC
Q psy10357 162 VFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLF 241 (252)
Q Consensus 162 ~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~ 241 (252)
.|.|.+.||...+ +.+|..|.+..++..+.++|..|.+++|.+|.++.. .+.|..|+.+.|++.+++|+++++|.+|
T Consensus 314 ~f~A~vvWm~~~p-l~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~~--a~~l~lN~Ig~v~i~~~~pi~fd~Y~~N 390 (431)
T COG2895 314 AFDADVVWMDEEP-LLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQEG--AESLPLNEIGRVRISFDKPIAFDAYAEN 390 (431)
T ss_pred hcceeEEEecCCC-CCCCceEEEEecceEEEEEeeeeEEEEecccccccc--ccccCCCcceEEEEecCCceeecccccC
Confidence 9999999999665 789999999999999999999999999999988774 4899999999999999999999999999
Q ss_pred CCceeEEEEeC
Q psy10357 242 PQMGRFTLRDE 252 (252)
Q Consensus 242 ~~lgrfilrd~ 252 (252)
+.+|+|||.|+
T Consensus 391 ~atG~FIlID~ 401 (431)
T COG2895 391 RATGSFILIDR 401 (431)
T ss_pred cccccEEEEEc
Confidence 99999999985
No 10
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=8e-45 Score=347.08 Aligned_cols=238 Identities=20% Similarity=0.296 Sum_probs=216.4
Q ss_pred hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc-C
Q psy10357 4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK-D 82 (252)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~-g 82 (252)
.+..++..+++++++ ++++++|+||++|+|+.+.+ +.++||.|+||+++|+.+++|.+..++||||+|+++|+ +
T Consensus 179 ~i~~~i~~~~~~~~~---~~~~iipiSA~~g~ni~~~~--~~~~wy~g~tL~~~l~~~~~~~~~~~~p~r~~i~~v~~~~ 253 (632)
T PRK05506 179 EIVADYRAFAAKLGL---HDVTFIPISALKGDNVVTRS--ARMPWYEGPSLLEHLETVEIASDRNLKDFRFPVQYVNRPN 253 (632)
T ss_pred HHHHHHHHHHHHcCC---CCccEEEEecccCCCccccc--cCCCcccHhHHHHHHhcCCCCCCcCCCCceeeEEEEEecC
Confidence 355666777777775 56799999999999999876 67999999999999999988877789999999999986 2
Q ss_pred -CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceec
Q psy10357 83 -MGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTAR 161 (252)
Q Consensus 83 -~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~ 161 (252)
.+..+.|+|++|.|++||+|.++|.++.++|+||++++.++++|.|||+|+++|+ +..++++|++||++++++..++
T Consensus 254 ~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~--~~~~i~rG~vL~~~~~~~~~~~ 331 (632)
T PRK05506 254 LDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPDGDLDEAFAGQAVTLTLA--DEIDISRGDMLARADNRPEVAD 331 (632)
T ss_pred CCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEECCceeCEEcCCCeEEEEec--CccccCCccEEecCCCCCccee
Confidence 2244789999999999999999999999999999999999999999999999998 5678999999999988788899
Q ss_pred EEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCC
Q psy10357 162 VFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLF 241 (252)
Q Consensus 162 ~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~ 241 (252)
.|+|++.||++++ +.+|+++++|+|+.+++|+|..|.+++|.+|++. .+|++|++|+.+.|+|++++|+|+++|+++
T Consensus 332 ~f~a~i~~l~~~~-~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~~--~~p~~l~~g~~~~v~l~~~~pi~~e~~~~~ 408 (632)
T PRK05506 332 QFDATVVWMAEEP-LLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLER--LAAKTLELNEIGRCNLSTDAPIAFDPYARN 408 (632)
T ss_pred EEEEEEEEecccc-cCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCcc--CCcceeCCCCEEEEEEEECCEEeeeecccc
Confidence 9999999999764 7799999999999999999999999999998875 578999999999999999999999999999
Q ss_pred CCceeEEEEe
Q psy10357 242 PQMGRFTLRD 251 (252)
Q Consensus 242 ~~lgrfilrd 251 (252)
+.||||+|||
T Consensus 409 ~~lGRfilrd 418 (632)
T PRK05506 409 RTTGSFILID 418 (632)
T ss_pred ccCceEEEEe
Confidence 9999999987
No 11
>KOG0458|consensus
Probab=100.00 E-value=2e-45 Score=333.07 Aligned_cols=249 Identities=30% Similarity=0.463 Sum_probs=234.7
Q ss_pred hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCC-CcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc
Q psy10357 3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGP-EICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK 81 (252)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~-~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~ 81 (252)
|+++++++.||++...+.+.++.||||||++|+|+....+. ....||+||||++.|+.+.+|.+..++||||+|.|+|+
T Consensus 336 ~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ltIsdi~~ 415 (603)
T KOG0458|consen 336 EEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPLRLTISDIYP 415 (603)
T ss_pred HHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCcccCCeEEEhhheee
Confidence 67899999999666656788999999999999999887433 56899999999999999999999999999999999997
Q ss_pred --CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEe-CCCCCcc
Q psy10357 82 --DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLC-DPNNPAR 158 (252)
Q Consensus 82 --g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~-~~~~~~~ 158 (252)
+.|.+++|+|++|.|+.||+|+++|+...++|++|.+++++...|.|||.|.+.|.++....+..|+++| .++.|..
T Consensus 416 ~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~~~~~~~i~ 495 (603)
T KOG0458|consen 416 LPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSNDEPKTWAVAGDNVSLKLPGILPNLVQVGDIADSGPQFPIS 495 (603)
T ss_pred cCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecCCCcceeEeeCCEEEEecCccChhhcccceeeecCCCcccc
Confidence 6788999999999999999999999999999999999999999999999999999999999999999999 6777788
Q ss_pred eecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeec
Q psy10357 159 TARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQF 238 (252)
Q Consensus 159 ~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~ 238 (252)
.+..|.+++.||+...|+..|..+.+|.|+..++|++.++.+.+|+.||+..++.|++|..||.|.++++++.|||+++|
T Consensus 496 ~~~~f~~~~~~f~~~~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~~~a~vele~~~pI~~etf 575 (603)
T KOG0458|consen 496 KTTRFVARITTFDINLPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSNQSAIVELETERPICLETF 575 (603)
T ss_pred ceeEEEEEEEEeeccccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccceeccCceeeeeccccCchhhhhh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEe
Q psy10357 239 KLFPQMGRFTLRD 251 (252)
Q Consensus 239 ~~~~~lgrfilrd 251 (252)
.++++||||+||.
T Consensus 576 ~~~~~lgr~vlr~ 588 (603)
T KOG0458|consen 576 AENRALGRVVLRK 588 (603)
T ss_pred hhchhheeEEEec
Confidence 9999999999995
No 12
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=3.2e-41 Score=307.29 Aligned_cols=234 Identities=22% Similarity=0.347 Sum_probs=204.6
Q ss_pred hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCC---CcCCCCcc-CchHHhhcc-CCCCCCCCCCCeeEEEe
Q psy10357 3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGP---EICTWWKG-GAFIPFIDA-LPSLNRKMDGPFLMPVV 77 (252)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~---~~~~w~~g-~~L~~~l~~-i~~~~~~~~~p~~~~I~ 77 (252)
|.++.++..+|+.+++ +.+++||+|+||++|+|+...+.. ..++||++ ++|+++|+. +++|.++.+.||||+|+
T Consensus 148 ~~~~~~l~~~l~~~~~-~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~ 226 (409)
T CHL00071 148 ELVELEVRELLSKYDF-PGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIE 226 (409)
T ss_pred HHHHHHHHHHHHHhCC-CCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEE
Confidence 4566788899988886 456799999999999998755411 13589985 999999987 56777888999999999
Q ss_pred eEEc--CCCeEEEEEEEEeeeecCCEEEEecC--CceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCC
Q psy10357 78 EKFK--DMGTVVMGKVESGEAKKGQSLVLMPN--RTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDP 153 (252)
Q Consensus 78 ~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~--~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 153 (252)
++|+ |.|++++|+|.+|.+++||.|.++|. +..++|++|+++++++++|.|||+|++.|++++..++++||+||++
T Consensus 227 ~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~ 306 (409)
T CHL00071 227 DVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKP 306 (409)
T ss_pred EEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcCcCCCEECCCceeEEEEcCCCHHHcCCeEEEecC
Confidence 9995 88999999999999999999999874 5789999999999999999999999999999888999999999999
Q ss_pred CCCcceecEEEEEEEEecc-----CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEE
Q psy10357 154 NNPARTARVFDAQIVILEH-----KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLE 228 (252)
Q Consensus 154 ~~~~~~~~~f~a~i~~~~~-----~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~ 228 (252)
+. +..+++|+|+|.+|++ +.++.+||++++|+|+.+++|+|+.|... ++ ..|++|++||.+.|+|+
T Consensus 307 ~~-~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~gt~~~~~~i~~i~~~----~~----~~~~~l~~g~~a~v~l~ 377 (409)
T CHL00071 307 GT-ITPHTKFEAQVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTAD----DG----SKTEMVMPGDRIKMTVE 377 (409)
T ss_pred CC-CCcceEEEEEEEEEecccCCccccccCCceEEEEEcccEEEEEEEEEccc----CC----CCCcEecCCCEEEEEEE
Confidence 75 5678999999999997 56899999999999999999999988542 11 35689999999999999
Q ss_pred eCceEEeeecCCCCCceeEEEEeC
Q psy10357 229 AAGVICLDQFKLFPQMGRFTLRDE 252 (252)
Q Consensus 229 l~~~i~~~~~~~~~~lgrfilrd~ 252 (252)
+++|+|++++ |||+|||.
T Consensus 378 ~~~pi~~e~~------~rfilR~~ 395 (409)
T CHL00071 378 LIYPIAIEKG------MRFAIREG 395 (409)
T ss_pred ECCeEEEeeC------CEEEEecC
Confidence 9999999985 79999984
No 13
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=5.1e-41 Score=304.69 Aligned_cols=223 Identities=24% Similarity=0.325 Sum_probs=198.7
Q ss_pred hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCcc-CchHHhhcc-CCCCCCCCCCCeeEEEeeEEc
Q psy10357 4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKG-GAFIPFIDA-LPSLNRKMDGPFLMPVVEKFK 81 (252)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g-~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~~ 81 (252)
.++.+++.+|+.+++ .++++||+|+||++|+|- + ..++||+| ++|+++|+. ++.|.+..++||||+|+++|+
T Consensus 149 ~~~~~i~~~l~~~~~-~~~~~~iv~iSa~~g~~~---~--~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~ 222 (396)
T PRK00049 149 LVEMEVRELLSKYDF-PGDDTPIIRGSALKALEG---D--DDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFS 222 (396)
T ss_pred HHHHHHHHHHHhcCC-CccCCcEEEeecccccCC---C--CcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEe
Confidence 456788888888886 567899999999999872 2 56899986 899999987 677888889999999999996
Q ss_pred --CCCeEEEEEEEEeeeecCCEEEEecC--CceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCc
Q psy10357 82 --DMGTVVMGKVESGEAKKGQSLVLMPN--RTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPA 157 (252)
Q Consensus 82 --g~G~vv~G~v~~G~l~~gd~v~i~p~--~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~ 157 (252)
|.|++++|+|++|.+++||+|.++|. ++.++|+||+.+++++++|.|||+|+++|++++..++++|++||+++. +
T Consensus 223 v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~~-~ 301 (396)
T PRK00049 223 ISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPGS-I 301 (396)
T ss_pred eCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCCC-C
Confidence 89999999999999999999999987 688999999999999999999999999999998899999999999875 4
Q ss_pred ceecEEEEEEEEecc-----CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCce
Q psy10357 158 RTARVFDAQIVILEH-----KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGV 232 (252)
Q Consensus 158 ~~~~~f~a~i~~~~~-----~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~ 232 (252)
.+++.|+|+|.+|++ ++++.+||++++|+|+.++.|+|. + ..+|++|++||.+.|+|++++|
T Consensus 302 ~~~~~f~a~i~vl~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~-l------------~~~~~~l~~g~~a~v~i~~~~p 368 (396)
T PRK00049 302 TPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGVIE-L------------PEGVEMVMPGDNVEMTVELIAP 368 (396)
T ss_pred CcceEEEEEEEEEecCcCCCCCcccCCCEEEEEEecCcEEEEEE-e------------cCCCcccCCCCEEEEEEEECce
Confidence 567999999999997 578999999999999999999982 2 1245889999999999999999
Q ss_pred EEeeecCCCCCceeEEEEeC
Q psy10357 233 ICLDQFKLFPQMGRFTLRDE 252 (252)
Q Consensus 233 i~~~~~~~~~~lgrfilrd~ 252 (252)
+|++++ |||+|||.
T Consensus 369 ~~~e~~------~RfilR~~ 382 (396)
T PRK00049 369 IAMEEG------LRFAIREG 382 (396)
T ss_pred EEEeeC------CEEEEecC
Confidence 999985 79999983
No 14
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=4.3e-41 Score=309.93 Aligned_cols=234 Identities=23% Similarity=0.314 Sum_probs=203.8
Q ss_pred hhHHHHHHhcccccccccCceeEEEecccccCCcccCCC---CCCcCCCCc-cCchHHhhcc-CCCCCCCCCCCeeEEEe
Q psy10357 3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPV---GPEICTWWK-GGAFIPFIDA-LPSLNRKMDGPFLMPVV 77 (252)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~---~~~~~~w~~-g~~L~~~l~~-i~~~~~~~~~p~~~~I~ 77 (252)
|.++.++..+|+++++ +.+++||+|+||++|+|+.... .....+||+ +++|+++|+. ++.|.++.++||||+|+
T Consensus 217 ~~i~~~i~~~l~~~g~-~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~ 295 (478)
T PLN03126 217 ELVELEVRELLSSYEF-PGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVE 295 (478)
T ss_pred HHHHHHHHHHHHhcCC-CcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceeeEEE
Confidence 4566788899998886 5578999999999998874211 012359998 5899999887 45678888999999999
Q ss_pred eEEc--CCCeEEEEEEEEeeeecCCEEEEecCC--ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCC
Q psy10357 78 EKFK--DMGTVVMGKVESGEAKKGQSLVLMPNR--TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDP 153 (252)
Q Consensus 78 ~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~--~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 153 (252)
++|+ |.|+|++|+|++|.|++||.|.++|.+ ..++|++|+.+++++++|.|||+|+++|++++..++++|++||++
T Consensus 296 ~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~ 375 (478)
T PLN03126 296 DVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKP 375 (478)
T ss_pred EEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEECCeECCEEeCCceeeeeccCCcHHHcCCccEEecC
Confidence 9996 899999999999999999999999986 578999999999999999999999999999999999999999999
Q ss_pred CCCcceecEEEEEEEEeccC-----CcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEE
Q psy10357 154 NNPARTARVFDAQIVILEHK-----SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLE 228 (252)
Q Consensus 154 ~~~~~~~~~f~a~i~~~~~~-----~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~ 228 (252)
+. +.+++.|+|+|.||+++ .+|.+||++.+|+|+.+++|+|..|....+ ..|++|++||.+.|+|+
T Consensus 376 ~~-~~~~~~F~A~i~vL~~~~gg~~~~I~~G~~~~lhigt~~~~~~I~~i~~~~~--------~~~~~l~~gd~a~v~l~ 446 (478)
T PLN03126 376 GS-ITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKD--------EESKMVMPGDRVKMVVE 446 (478)
T ss_pred CC-CCceEEEEEEEEEecccccCCcccccCCcEEEEEEEecEEEEEEEEEecccC--------CCccEeCCCCEEEEEEE
Confidence 76 56689999999999975 579999999999999999999998864332 24589999999999999
Q ss_pred eCceEEeeecCCCCCceeEEEEeC
Q psy10357 229 AAGVICLDQFKLFPQMGRFTLRDE 252 (252)
Q Consensus 229 l~~~i~~~~~~~~~~lgrfilrd~ 252 (252)
+++|+|++. +|||+|||.
T Consensus 447 ~~~Pi~~~~------~~RfilR~~ 464 (478)
T PLN03126 447 LIVPVACEQ------GMRFAIREG 464 (478)
T ss_pred ECCeEEEcc------CCEEEEecC
Confidence 999999986 689999984
No 15
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.4e-40 Score=301.86 Aligned_cols=224 Identities=23% Similarity=0.324 Sum_probs=197.7
Q ss_pred hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCcc-CchHHhhcc-CCCCCCCCCCCeeEEEeeEE
Q psy10357 3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKG-GAFIPFIDA-LPSLNRKMDGPFLMPVVEKF 80 (252)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g-~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~ 80 (252)
+.++.++..+++.+++ ..++++|+|+||++|+|.. ..++||.+ ++|+++|+. +|.|.++.++||||+|+++|
T Consensus 148 ~~~~~ei~~~l~~~~~-~~~~~~ii~~Sa~~g~n~~-----~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f 221 (396)
T PRK12735 148 ELVEMEVRELLSKYDF-PGDDTPIIRGSALKALEGD-----DDEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVF 221 (396)
T ss_pred HHHHHHHHHHHHHcCC-CcCceeEEecchhccccCC-----CCCcccccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEE
Confidence 4456678888887775 4467999999999999962 45899975 899999987 67788888999999999999
Q ss_pred c--CCCeEEEEEEEEeeeecCCEEEEecC--CceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCC
Q psy10357 81 K--DMGTVVMGKVESGEAKKGQSLVLMPN--RTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNP 156 (252)
Q Consensus 81 ~--g~G~vv~G~v~~G~l~~gd~v~i~p~--~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 156 (252)
+ |.|++++|+|++|.+++||+|.++|. ++.++|++|+++++++++|.|||+|+++|++++..++++|++||+++.
T Consensus 222 ~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~~- 300 (396)
T PRK12735 222 SISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGS- 300 (396)
T ss_pred ecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCCC-
Confidence 5 89999999999999999999999997 478999999999999999999999999999999999999999999875
Q ss_pred cceecEEEEEEEEecc-----CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCc
Q psy10357 157 ARTARVFDAQIVILEH-----KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAG 231 (252)
Q Consensus 157 ~~~~~~f~a~i~~~~~-----~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~ 231 (252)
+.+++.|+|+|.+|++ +.+|.+||++++|+|+.+++|+|... .++++|++|+.+.|+|++++
T Consensus 301 ~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~~-------------~~~~~l~~g~~a~v~l~~~~ 367 (396)
T PRK12735 301 IKPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGTIELP-------------EGVEMVMPGDNVKMTVELIA 367 (396)
T ss_pred CCcceEEEEEEEEEecccCCCCCcccCCCeeEEEeccceEEEEEEcc-------------CCCceeCCCCEEEEEEEECc
Confidence 5678999999999997 46799999999999999999997421 13578999999999999999
Q ss_pred eEEeeecCCCCCceeEEEEeC
Q psy10357 232 VICLDQFKLFPQMGRFTLRDE 252 (252)
Q Consensus 232 ~i~~~~~~~~~~lgrfilrd~ 252 (252)
|+|++.+ |||+|||.
T Consensus 368 p~~~~~~------~rfilR~~ 382 (396)
T PRK12735 368 PIAMEEG------LRFAIREG 382 (396)
T ss_pred eEEEeEC------CEEEEEcC
Confidence 9999985 79999983
No 16
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=3.9e-39 Score=292.33 Aligned_cols=222 Identities=23% Similarity=0.333 Sum_probs=194.9
Q ss_pred hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCcc-CchHHhhcc-CCCCCCCCCCCeeEEEeeEE
Q psy10357 3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKG-GAFIPFIDA-LPSLNRKMDGPFLMPVVEKF 80 (252)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g-~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~ 80 (252)
|.++.++..+|+.+++ +.+++||+|+||++|.+. ..+||.+ ++|++.|+. +|.|.++.++||||+|+++|
T Consensus 148 ~~i~~~i~~~l~~~~~-~~~~~~ii~vSa~~g~~~-------~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~ 219 (394)
T PRK12736 148 ELVEMEVRELLSEYDF-PGDDIPVIRGSALKALEG-------DPKWEDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVF 219 (394)
T ss_pred HHHHHHHHHHHHHhCC-CcCCccEEEeeccccccC-------CCcchhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEE
Confidence 3456688888888876 556789999999999642 2479965 889998876 77788888999999999999
Q ss_pred c--CCCeEEEEEEEEeeeecCCEEEEecC--CceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCC
Q psy10357 81 K--DMGTVVMGKVESGEAKKGQSLVLMPN--RTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNP 156 (252)
Q Consensus 81 ~--g~G~vv~G~v~~G~l~~gd~v~i~p~--~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 156 (252)
+ |.|++++|+|++|.|++||.|.++|. ++.++|+||+++++++++|.|||+|+++|++++..++++|++||+++.
T Consensus 220 ~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~~- 298 (394)
T PRK12736 220 TITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPGS- 298 (394)
T ss_pred ecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEECCEEccEECCCCEEEEEECCCcHHhCCcceEEecCCC-
Confidence 6 89999999999999999999999998 678999999999999999999999999999998899999999999875
Q ss_pred cceecEEEEEEEEecc-----CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCc
Q psy10357 157 ARTARVFDAQIVILEH-----KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAG 231 (252)
Q Consensus 157 ~~~~~~f~a~i~~~~~-----~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~ 231 (252)
+.+++.|+|++.+|++ +.++.+||++++|+|+.++.|+|.. ..++++|++|+.+.|+|++++
T Consensus 299 ~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~-------------~~~~~~l~~g~~a~v~l~~~~ 365 (394)
T PRK12736 299 IKPHTKFKAEVYILTKEEGGRHTPFFNNYRPQFYFRTTDVTGSIEL-------------PEGTEMVMPGDNVTITVELIH 365 (394)
T ss_pred CCcceEEEEEEEEEecccCCCCCcccCCceEEEEEccCeEEEEEEe-------------cCCcceeCCCCEEEEEEEECc
Confidence 4567999999999987 4679999999999999999998742 123578999999999999999
Q ss_pred eEEeeecCCCCCceeEEEEeC
Q psy10357 232 VICLDQFKLFPQMGRFTLRDE 252 (252)
Q Consensus 232 ~i~~~~~~~~~~lgrfilrd~ 252 (252)
|+|++.+ +||+|||.
T Consensus 366 p~~~~~~------~rfilR~~ 380 (394)
T PRK12736 366 PIAMEQG------LKFAIREG 380 (394)
T ss_pred eEEEeeC------CEEEEecC
Confidence 9999985 69999984
No 17
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=1.5e-38 Score=288.59 Aligned_cols=221 Identities=23% Similarity=0.343 Sum_probs=193.5
Q ss_pred hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCcc-CchHHhhcc-CCCCCCCCCCCeeEEEeeEEc
Q psy10357 4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKG-GAFIPFIDA-LPSLNRKMDGPFLMPVVEKFK 81 (252)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g-~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~~ 81 (252)
.++.++..+++.+++ ...++|++|+||++|.+. ..+||.+ ++|+++|+. +|.|.++.++||||+|+++|+
T Consensus 149 ~~~~~i~~~l~~~~~-~~~~~~ii~vSa~~g~~g-------~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~ 220 (394)
T TIGR00485 149 LVEMEVRELLSEYDF-PGDDTPIIRGSALKALEG-------DAEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFS 220 (394)
T ss_pred HHHHHHHHHHHhcCC-CccCccEEECcccccccc-------CCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEe
Confidence 355678888888775 456689999999999752 2479974 899999887 466788889999999999996
Q ss_pred --CCCeEEEEEEEEeeeecCCEEEEecC--CceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCc
Q psy10357 82 --DMGTVVMGKVESGEAKKGQSLVLMPN--RTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPA 157 (252)
Q Consensus 82 --g~G~vv~G~v~~G~l~~gd~v~i~p~--~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~ 157 (252)
|.|++++|+|++|.|++||.|.++|. ++.++|++|+.++.++++|.|||+|+++|++++..++++|++||+++. +
T Consensus 221 ~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~~~-~ 299 (394)
T TIGR00485 221 ITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPGS-I 299 (394)
T ss_pred eCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEECCeEEEEECCCCEEEEEeCCccHHHCCccEEEecCCC-C
Confidence 88999999999999999999999985 678999999999999999999999999999988889999999999865 4
Q ss_pred ceecEEEEEEEEecc-----CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCce
Q psy10357 158 RTARVFDAQIVILEH-----KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGV 232 (252)
Q Consensus 158 ~~~~~f~a~i~~~~~-----~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~ 232 (252)
.+++.|+|+|.+|++ +.++..||++.+|+|+.++.|++..+ ..|++|++|+.+.|+|++++|
T Consensus 300 ~~~~~f~a~i~vl~~~~g~~~~~i~~g~~~~l~~~t~~~~~~i~~~-------------~~~~~l~~g~~a~v~~~~~~p 366 (394)
T TIGR00485 300 KPHTKFEAEVYVLKKEEGGRHTPFFSGYRPQFYFRTTDVTGSITLP-------------EGVEMVMPGDNVKMTVELISP 366 (394)
T ss_pred CcceEEEEEEEEEecCCCCCCCccccCceEEEEEecceEEEEEEec-------------CCcceeCCCCEEEEEEEECce
Confidence 567999999999997 36899999999999999999998631 135789999999999999999
Q ss_pred EEeeecCCCCCceeEEEEeC
Q psy10357 233 ICLDQFKLFPQMGRFTLRDE 252 (252)
Q Consensus 233 i~~~~~~~~~~lgrfilrd~ 252 (252)
+|++++ +||+|||.
T Consensus 367 ~~~~~~------~rfilR~~ 380 (394)
T TIGR00485 367 IALEQG------MRFAIREG 380 (394)
T ss_pred EEEeEC------CEEEEecC
Confidence 999984 79999983
No 18
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=3.1e-38 Score=289.53 Aligned_cols=224 Identities=21% Similarity=0.289 Sum_probs=191.9
Q ss_pred hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CCCCCCCCCCCeeEEEeeEEc-
Q psy10357 4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LPSLNRKMDGPFLMPVVEKFK- 81 (252)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~~- 81 (252)
.++.+++.+++.+++ ..+++||+|+||+++.+-.+. ...|+.+++|+++|+. +|.|.+..++||||+|+++|+
T Consensus 198 ~i~~~i~~~l~~~~~-~~~~vpiip~Sa~sa~~g~n~----~~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v 272 (447)
T PLN03127 198 LVEMELRELLSFYKF-PGDEIPIIRGSALSALQGTND----EIGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSI 272 (447)
T ss_pred HHHHHHHHHHHHhCC-CCCcceEEEeccceeecCCCc----ccccchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEc
Confidence 455567777777665 456899999999865322221 2357778899999887 677888889999999999996
Q ss_pred -CCCeEEEEEEEEeeeecCCEEEEecC----CceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCC
Q psy10357 82 -DMGTVVMGKVESGEAKKGQSLVLMPN----RTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNP 156 (252)
Q Consensus 82 -g~G~vv~G~v~~G~l~~gd~v~i~p~----~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 156 (252)
|.|++++|+|++|.+++||.|.++|. +..++|+||+.+++++++|.|||+|+++|++++..++++|++||+++.
T Consensus 273 ~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~~~- 351 (447)
T PLN03127 273 QGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDVQRGQVICKPGS- 351 (447)
T ss_pred CCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecCCC-
Confidence 89999999999999999999999975 468999999999999999999999999999999999999999999864
Q ss_pred cceecEEEEEEEEeccC-----CcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCc
Q psy10357 157 ARTARVFDAQIVILEHK-----SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAG 231 (252)
Q Consensus 157 ~~~~~~f~a~i~~~~~~-----~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~ 231 (252)
+..+++|+|+|.+|+++ .++.+||++++|+|+.+++|+|... .+|++|++||.+.|+|++++
T Consensus 352 ~~~~~~F~A~i~vl~~~~gg~~~~i~~g~~~~~~~~t~~~~~~i~~~-------------~~~~~l~~gd~a~v~l~~~~ 418 (447)
T PLN03127 352 IKTYKKFEAEIYVLTKDEGGRHTPFFSNYRPQFYLRTADVTGKVELP-------------EGVKMVMPGDNVTAVFELIS 418 (447)
T ss_pred CceeEEEEEEEEEEcccccccCcccccCceeEEEeeecceeEEEEec-------------cCccccCCCCEEEEEEEECc
Confidence 67899999999999973 6799999999999999999998421 24588999999999999999
Q ss_pred eEEeeecCCCCCceeEEEEeC
Q psy10357 232 VICLDQFKLFPQMGRFTLRDE 252 (252)
Q Consensus 232 ~i~~~~~~~~~~lgrfilrd~ 252 (252)
|+|++.+ |||+|||.
T Consensus 419 p~~le~g------~RfilR~~ 433 (447)
T PLN03127 419 PVPLEPG------QRFALREG 433 (447)
T ss_pred eEEEeeC------CEEEEEeC
Confidence 9999974 79999983
No 19
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=5.8e-33 Score=254.56 Aligned_cols=204 Identities=20% Similarity=0.261 Sum_probs=176.3
Q ss_pred hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhc-cCCCCCCCCCCCeeEEEeeEEc-
Q psy10357 4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFID-ALPSLNRKMDGPFLMPVVEKFK- 81 (252)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~-~i~~~~~~~~~p~~~~I~~~~~- 81 (252)
.++.+++.+++... ..++++||+||++|+|+.. |+++|+ .+|.|.++.+.||||+|+++|.
T Consensus 191 ~~~~ei~~~l~~~~---~~~~~iipVSA~~G~nI~~--------------Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V 253 (460)
T PTZ00327 191 DQYEEIRNFVKGTI---ADNAPIIPISAQLKYNIDV--------------VLEYICTQIPIPKRDLTSPPRMIVIRSFDV 253 (460)
T ss_pred HHHHHHHHHHHhhc---cCCCeEEEeeCCCCCCHHH--------------HHHHHHhhCCCCCCCCCCCcEEEEEEEEee
Confidence 45667777666543 3678999999999999954 788887 6888888889999999999883
Q ss_pred -C--------CCeEEEEEEEEeeeecCCEEEEecCC-------------ceEEEEEEEeCCccceeecCCCeEEEEEe--
Q psy10357 82 -D--------MGTVVMGKVESGEAKKGQSLVLMPNR-------------TPVIVDQLWSDDEEVSSVGPGENIKVKLK-- 137 (252)
Q Consensus 82 -g--------~G~vv~G~v~~G~l~~gd~v~i~p~~-------------~~~~V~sI~~~~~~v~~a~aG~~v~l~l~-- 137 (252)
+ .|+|++|+|.+|++++||.|.++|++ ..++|+||+.++.++++|.|||+|+++|+
T Consensus 254 ~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~~~~v~~a~aG~~vai~l~ld 333 (460)
T PTZ00327 254 NKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENNELQYAVPGGLIGVGTTID 333 (460)
T ss_pred cccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEECCeECCEEcCCCEEEEEeccC
Confidence 2 69999999999999999999999975 46899999999999999999999999998
Q ss_pred -eeCCCCccceeEEeCCCCCcceecEEEEEEEEeccC--------------CcCCCCCEEEEEEEeeEEEEEEEEEEEee
Q psy10357 138 -GIEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHK--------------SIICAGYSAVMHIHCVAEEVNVKALICLI 202 (252)
Q Consensus 138 -~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~--------------~~i~~g~~~~l~~~~~~~~~~i~~i~~~~ 202 (252)
+++..++.||++|++++.+++.++.|+|++.|+++. .++.+|+++.+|+++.++.|+|..+.
T Consensus 334 ~~v~~~dv~rG~Vl~~~~~~~~~~~~~~a~v~~L~~~~~~~~~~~~~~~~~~~l~~g~~~~l~~gt~~~~~~i~~i~--- 410 (460)
T PTZ00327 334 PTLTRADRLVGQVLGYPGKLPEVYAEIEIQYYLLRRLLGVKSQDGKKATKVAKLKKGESLMINIGSTTTGGRVVGIK--- 410 (460)
T ss_pred CCcchhhcccccEEEcCCCCCceeEEEEEEEEEecccccccccccccccCCcccCCCCEEEEEecccEEEEEEEEeC---
Confidence 678889999999999987777788999999999772 67999999999999999999998752
Q ss_pred cccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCCCCceeEEEEe
Q psy10357 203 DKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRD 251 (252)
Q Consensus 203 d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~lgrfilrd 251 (252)
. . . .++|++++|+|+...+ ||+||+
T Consensus 411 -~----------~-----~--~~~l~l~~P~~~~~gd------r~ilr~ 435 (460)
T PTZ00327 411 -D----------D-----G--IAKLELTTPVCTSVGE------KIALSR 435 (460)
T ss_pred -C----------C-----e--EEEEEECccEeccCCC------EEEEEe
Confidence 1 0 0 6678899999999876 999985
No 20
>KOG0460|consensus
Probab=100.00 E-value=1.3e-34 Score=247.97 Aligned_cols=227 Identities=23% Similarity=0.356 Sum_probs=198.2
Q ss_pred CchhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CCCCCCCCCCCeeEEEeeE
Q psy10357 1 MRESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LPSLNRKMDGPFLMPVVEK 79 (252)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~~~~I~~~ 79 (252)
|.|+++-|++++|++.+| +.++.|+|.-||++-.--.++. ..--.-.-|++++|+ ||.|.|+.++||.|+|.++
T Consensus 188 ~leLVEmE~RElLse~gf-~Gd~~PvI~GSAL~ALeg~~pe----ig~~aI~kLldavDsyip~P~R~~~~pFl~pie~v 262 (449)
T KOG0460|consen 188 MLELVEMEIRELLSEFGF-DGDNTPVIRGSALCALEGRQPE----IGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDV 262 (449)
T ss_pred HHHHHHHHHHHHHHHcCC-CCCCCCeeecchhhhhcCCCcc----ccHHHHHHHHHHHhccCCCcccccCCCceeehhhe
Confidence 579999999999999997 9999999999998863222221 010111237888887 9999999999999999999
Q ss_pred Ec--CCCeEEEEEEEEeeeecCCEEEEecCC--ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCC
Q psy10357 80 FK--DMGTVVMGKVESGEAKKGQSLVLMPNR--TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNN 155 (252)
Q Consensus 80 ~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~--~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 155 (252)
|+ |+|+|++|++++|.+++||++.+.-.+ .+.+|..|+++++.+++|.|||++++.|+|+..++++||+++|.|.+
T Consensus 263 fsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGs 342 (449)
T KOG0460|consen 263 FSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGS 342 (449)
T ss_pred eeecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehHHHHHHHHHhcccccceehhhhcCCHHHHhcccEEecCCc
Confidence 97 999999999999999999999998766 57899999999999999999999999999999999999999999998
Q ss_pred CcceecEEEEEEEEecc-----CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeC
Q psy10357 156 PARTARVFDAQIVILEH-----KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAA 230 (252)
Q Consensus 156 ~~~~~~~f~a~i~~~~~-----~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~ 230 (252)
.++++.|+|++++|.. .+++..+|++.+|+.|+.+.+++.-. +. -+++.+|+.+.+++.|-
T Consensus 343 -vk~~~k~ea~~YiLsk~EGGR~~pf~s~y~~q~fs~TwD~~~~v~~~----~~---------~~mvMPGe~~~~~~~Li 408 (449)
T KOG0460|consen 343 -VKPHNKFEAQLYILSKEEGGRHKPFVSGYRPQMFSRTWDVTGRVDIP----PE---------KEMVMPGENVKVEVTLI 408 (449)
T ss_pred -ccccceeeEEEEEEEhhhCCCccchhhccchhheeeecccceEEEcc----Ch---------HhcccCCCCeEEEEEEe
Confidence 8899999999999974 46799999999999999999998642 11 17899999999999999
Q ss_pred ceEEeeecCCCCCceeEEEEeC
Q psy10357 231 GVICLDQFKLFPQMGRFTLRDE 252 (252)
Q Consensus 231 ~~i~~~~~~~~~~lgrfilrd~ 252 (252)
+|++++... ||.||+.
T Consensus 409 ~pm~le~Gq------rFtiReG 424 (449)
T KOG0460|consen 409 RPMPLEKGQ------RFTLREG 424 (449)
T ss_pred cccccCCCc------eeeEccC
Confidence 999999987 9999974
No 21
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.98 E-value=5.9e-31 Score=239.78 Aligned_cols=198 Identities=20% Similarity=0.264 Sum_probs=169.0
Q ss_pred HHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CCCCCCCCCCCeeEEEeeEEc--C-
Q psy10357 7 YAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LPSLNRKMDGPFLMPVVEKFK--D- 82 (252)
Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~~--g- 82 (252)
.++..+++... ..+++++|+||++|+|+.+ |++.|.. ++.|.+..++||||+|+++|+ |
T Consensus 162 ~~i~~~l~~~~---~~~~~ii~vSA~~g~gI~~--------------L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~ 224 (411)
T PRK04000 162 EQIKEFVKGTV---AENAPIIPVSALHKVNIDA--------------LIEAIEEEIPTPERDLDKPPRMYVARSFDVNKP 224 (411)
T ss_pred HHHHHHhcccc---CCCCeEEEEECCCCcCHHH--------------HHHHHHHhCCCCCCCCCCCceEEEEeeeeecCC
Confidence 44555554332 2467999999999999965 6677766 787888889999999999994 3
Q ss_pred -------CCeEEEEEEEEeeeecCCEEEEecCCc------------eEEEEEEEeCCccceeecCCCeEEEEEe---eeC
Q psy10357 83 -------MGTVVMGKVESGEAKKGQSLVLMPNRT------------PVIVDQLWSDDEEVSSVGPGENIKVKLK---GIE 140 (252)
Q Consensus 83 -------~G~vv~G~v~~G~l~~gd~v~i~p~~~------------~~~V~sI~~~~~~v~~a~aG~~v~l~l~---~~~ 140 (252)
.|+|++|+|++|.+++||.|.++|+++ .++|+||+.++.++++|.|||+|+++|+ +++
T Consensus 225 g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~~~~~~a~~G~~v~i~l~~~~~i~ 304 (411)
T PRK04000 225 GTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGGEKVEEARPGGLVGVGTKLDPSLT 304 (411)
T ss_pred CccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEECCEECCEEcCCCEEEEEeccCCCCC
Confidence 477999999999999999999999864 5799999999999999999999999996 667
Q ss_pred CCCccceeEEeCCCCCcceecEEEEEEEEecc---------CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccc
Q psy10357 141 EDDVSPGFVLCDPNNPARTARVFDAQIVILEH---------KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSK 211 (252)
Q Consensus 141 ~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~---------~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~ 211 (252)
..++++|++||+++.+++.++.|+|++.|+++ +.+|.+|+++.+|+|+.+++|+|..+.
T Consensus 305 ~~~i~~G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~i~------------ 372 (411)
T PRK04000 305 KADALAGSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPIKTGEPLMLNVGTATTVGVVTSAR------------ 372 (411)
T ss_pred HHHccCccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCCCCCCEEEEEEeccEEEEEEEEcC------------
Confidence 78899999999998888888999999999987 678999999999999999999998761
Q ss_pred cCCceecCCCEEEEEEEeCceEEeeecCCCCCceeEEE
Q psy10357 212 TRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTL 249 (252)
Q Consensus 212 ~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~lgrfil 249 (252)
++ .++|.+.+|+|+...+ ||+|
T Consensus 373 --------~~--~~~~~l~~p~~~~~g~------r~~~ 394 (411)
T PRK04000 373 --------KD--EAEVKLKRPVCAEEGD------RVAI 394 (411)
T ss_pred --------Cc--EEEEEECCcEecCCCC------EEEE
Confidence 12 4567789999998876 8888
No 22
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.98 E-value=2.7e-31 Score=251.80 Aligned_cols=199 Identities=19% Similarity=0.230 Sum_probs=171.2
Q ss_pred hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc--
Q psy10357 4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK-- 81 (252)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~-- 81 (252)
.+..++..+++..+. ++.+++|+||++|+|+.+ |.+.|+.++.+.+..+.||||+|+++|+
T Consensus 124 ~v~~ei~~~l~~~~~---~~~~ii~VSA~tG~gI~~--------------L~~~L~~~~~~~~~~~~~~rl~Id~vf~v~ 186 (614)
T PRK10512 124 EVRRQVKAVLREYGF---AEAKLFVTAATEGRGIDA--------------LREHLLQLPEREHAAQHRFRLAIDRAFTVK 186 (614)
T ss_pred HHHHHHHHHHHhcCC---CCCcEEEEeCCCCCCCHH--------------HHHHHHHhhccccCcCCCceEEEEEEeccC
Confidence 345666667666654 457899999999999965 6788888877777788999999999995
Q ss_pred CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEee-eCCCCccceeEEeCCCCCccee
Q psy10357 82 DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKG-IEEDDVSPGFVLCDPNNPARTA 160 (252)
Q Consensus 82 g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~-~~~~~i~~G~vl~~~~~~~~~~ 160 (252)
|.|+|++|+|.+|++++||+|.++|.+..++|++|++++.++++|.|||+|+++|++ ++..+++|||+||+++. +..+
T Consensus 187 G~GtVvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~~-~~~~ 265 (614)
T PRK10512 187 GAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADAP-PEPF 265 (614)
T ss_pred CCeEEEEEEEecceEecCCEEEEcCCCCcEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCCC-Cccc
Confidence 899999999999999999999999999999999999999999999999999999997 88899999999998853 5566
Q ss_pred cEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCC
Q psy10357 161 RVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKL 240 (252)
Q Consensus 161 ~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~ 240 (252)
..+.+. +....++++|+++.+|+|+.++.|+|..+ +.+.+++.+++|+++...+
T Consensus 266 ~~~~~~---l~~~~~l~~~~~~~~~~gt~~~~~~i~~l----------------------~~~~~~l~l~~p~~~~~gd- 319 (614)
T PRK10512 266 TRVIVE---LQTHTPLTQWQPLHIHHAASHVTGRVSLL----------------------EDNLAELVLDTPLWLADND- 319 (614)
T ss_pred eeEEEE---EcCCccCCCCCEEEEEEcccEEEEEEEEc----------------------CCeEEEEEECCcccccCCC-
Confidence 666544 44456799999999999999999999765 1257889999999988876
Q ss_pred CCCceeEEEEe
Q psy10357 241 FPQMGRFTLRD 251 (252)
Q Consensus 241 ~~~lgrfilrd 251 (252)
||+||+
T Consensus 320 -----r~ilr~ 325 (614)
T PRK10512 320 -----RLVLRD 325 (614)
T ss_pred -----EEEEEe
Confidence 999997
No 23
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.97 E-value=1.6e-30 Score=236.88 Aligned_cols=199 Identities=19% Similarity=0.276 Sum_probs=168.9
Q ss_pred HHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CCCCCCCCCCCeeEEEeeEEc--C
Q psy10357 6 KYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LPSLNRKMDGPFLMPVVEKFK--D 82 (252)
Q Consensus 6 ~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~~--g 82 (252)
+.++..+++..+ ..+++++|+||++|+|+.+ |++.|.. ++.|.++.+.||||+|+++|. +
T Consensus 156 ~~~i~~~l~~~~---~~~~~ii~vSA~~g~gi~~--------------L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~ 218 (406)
T TIGR03680 156 YEEIKEFVKGTV---AENAPIIPVSALHNANIDA--------------LLEAIEKFIPTPERDLDKPPLMYVARSFDVNK 218 (406)
T ss_pred HHHHHhhhhhcc---cCCCeEEEEECCCCCChHH--------------HHHHHHHhCCCCCCCCCCCcEEEEEEEEeecC
Confidence 345555555432 2567999999999999965 6787876 787888889999999999993 3
Q ss_pred --------CCeEEEEEEEEeeeecCCEEEEecCC------------ceEEEEEEEeCCccceeecCCCeEEEEEe---ee
Q psy10357 83 --------MGTVVMGKVESGEAKKGQSLVLMPNR------------TPVIVDQLWSDDEEVSSVGPGENIKVKLK---GI 139 (252)
Q Consensus 83 --------~G~vv~G~v~~G~l~~gd~v~i~p~~------------~~~~V~sI~~~~~~v~~a~aG~~v~l~l~---~~ 139 (252)
.|+|++|+|++|+|++||.|.++|++ ..++|+||+.++.++++|.|||+|+++|+ ++
T Consensus 219 ~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~~~~~~~a~~G~~v~i~l~~~~~i 298 (406)
T TIGR03680 219 PGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAGGYKVEEARPGGLVGVGTKLDPAL 298 (406)
T ss_pred CCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEECCEECCEEcCCCEEEEeeccCCCC
Confidence 57899999999999999999999985 25799999999999999999999999984 67
Q ss_pred CCCCccceeEEeCCCCCcceecEEEEEEEEecc---------CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCccc
Q psy10357 140 EEDDVSPGFVLCDPNNPARTARVFDAQIVILEH---------KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKS 210 (252)
Q Consensus 140 ~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~---------~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~ 210 (252)
+..|+.+|++||+++.++..++.|+|++.|+.+ +.+|.+|+++.+|+|+.+++|+|..+.
T Consensus 299 ~~~dv~~G~vl~~~~~~~~~~~~f~a~i~~l~~~~~~~~~~~~~~i~~g~~~~l~~gt~~~~~~v~~~~----------- 367 (406)
T TIGR03680 299 TKADALAGQVVGKPGTLPPVWESLELEVHLLERVVGTEEELKVEPIKTGEVLMLNVGTATTVGVVTSAR----------- 367 (406)
T ss_pred CHHHcccccEEEcCCCCCCceeEEEEEEEEEecccCcccccccccCCCCCEEEEEEccceEEEEEEEcC-----------
Confidence 788999999999998777788999999999975 368999999999999999999998752
Q ss_pred ccCCceecCCCEEEEEEEeCceEEeeecCCCCCceeEEE
Q psy10357 211 KTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTL 249 (252)
Q Consensus 211 ~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~lgrfil 249 (252)
++ .++|.+.+|+|+...+ ||+|
T Consensus 368 ---------~~--~~~l~l~~p~~~~~g~------r~~~ 389 (406)
T TIGR03680 368 ---------KD--EIEVKLKRPVCAEEGD------RVAI 389 (406)
T ss_pred ---------Cc--EEEEEECCcEEcCCCC------EEEE
Confidence 11 3677789999998876 8887
No 24
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.97 E-value=6.1e-31 Score=228.63 Aligned_cols=194 Identities=29% Similarity=0.511 Sum_probs=176.2
Q ss_pred eeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCC-CCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecC
Q psy10357 23 ILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNR-KMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKG 99 (252)
Q Consensus 23 ~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~-~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~g 99 (252)
-+|++.+|+.+|+|++- |.+.+..+|...+ +...||+|.||+.|. |.|+++.|+|.+|.+..|
T Consensus 313 vvPi~~tSsVTg~Gldl--------------L~e~f~~Lp~rr~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~g 378 (527)
T COG5258 313 VVPIFYTSSVTGEGLDL--------------LDEFFLLLPKRRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVG 378 (527)
T ss_pred eEEEEEEecccCccHHH--------------HHHHHHhCCcccccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccC
Confidence 68999999999999853 6778888886644 556899999999996 999999999999999999
Q ss_pred CEEEEecCC----ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceecEEEEEEEEeccCCc
Q psy10357 100 QSLVLMPNR----TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHKSI 175 (252)
Q Consensus 100 d~v~i~p~~----~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~ 175 (252)
|+|++.|.. +.++|+||++|+..+++|.||+++++.++|+..++++|||+|+.. .+|++.++|+|++.+|.||+.
T Consensus 379 d~vllGP~~~G~fr~v~vkSIemh~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~~~-~~pkaVref~AeV~vl~HPT~ 457 (527)
T COG5258 379 DTVLLGPFKDGKFREVVVKSIEMHHYRVDSAKAGSIIGIALKGVEKEELERGMVLSAG-ADPKAVREFDAEVLVLRHPTT 457 (527)
T ss_pred CEEEEccCCCCcEEEEEEEEEEEeeEEeccccCCcEEEEEecccCHHHHhcceEecCC-CCchhhheecceEEEEeCCcE
Confidence 999999977 789999999999999999999999999999999999999999988 568999999999999999999
Q ss_pred CCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeC-ceEEeeecCCCCCceeEEEEe
Q psy10357 176 ICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAA-GVICLDQFKLFPQMGRFTLRD 251 (252)
Q Consensus 176 i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~-~~i~~~~~~~~~~lgrfilrd 251 (252)
|+.||.+++|.-+.+..++++.+ |. .+|++||...+++.+. +|=.++..+ +|++|+
T Consensus 458 I~aGye~v~H~etI~e~~~f~~i----d~----------~~L~~GD~g~vr~~fkyrP~~v~eGQ------~fvFRe 514 (527)
T COG5258 458 IRAGYEPVFHYETIREAVYFEEI----DK----------GFLMPGDRGVVRMRFKYRPHHVEEGQ------KFVFRE 514 (527)
T ss_pred EecCceeeeEeeEeeheeEEEEc----cc----------ccccCCCcceEEEEEEeCchhhccCc------EEEEec
Confidence 99999999999999999988774 43 7899999999999998 888888754 788876
No 25
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.4e-30 Score=219.70 Aligned_cols=224 Identities=23% Similarity=0.337 Sum_probs=193.1
Q ss_pred CchhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCcc-CchHHhhcc-CCCCCCCCCCCeeEEEee
Q psy10357 1 MRESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKG-GAFIPFIDA-LPSLNRKMDGPFLMPVVE 78 (252)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g-~~L~~~l~~-i~~~~~~~~~p~~~~I~~ 78 (252)
|.|++.-|++.+|++.++ +.++.|++--||+.--.- ..+|... .-|+++++. +|.|.|+.++||+|+|.|
T Consensus 146 llelVemEvreLLs~y~f-~gd~~Pii~gSal~ale~-------~~~~~~~i~eLm~avd~yip~Per~~dkPflmpvEd 217 (394)
T COG0050 146 LLELVEMEVRELLSEYGF-PGDDTPIIRGSALKALEG-------DAKWEAKIEELMDAVDSYIPTPERDIDKPFLMPVED 217 (394)
T ss_pred HHHHHHHHHHHHHHHcCC-CCCCcceeechhhhhhcC-------CcchHHHHHHHHHHHHhcCCCCCCccccccccccee
Confidence 358899999999999997 778999999999875321 1224432 247777766 899999999999999999
Q ss_pred EEc--CCCeEEEEEEEEeeeecCCEEEEecCC--ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357 79 KFK--DMGTVVMGKVESGEAKKGQSLVLMPNR--TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN 154 (252)
Q Consensus 79 ~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~--~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 154 (252)
+|+ |+|++++|+|++|.+++||.+.+.-.. ++..|.+|+++.+..+++.|||+|++.|+++.+.+++||++|+.|.
T Consensus 218 vfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpg 297 (394)
T COG0050 218 VFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPG 297 (394)
T ss_pred eEEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHHHHHHHHhccccCCCcceEEEeccccceecceEeecCC
Confidence 997 999999999999999999999987665 5779999999999999999999999999999999999999999998
Q ss_pred CCcceecEEEEEEEEecc-----CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEe
Q psy10357 155 NPARTARVFDAQIVILEH-----KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEA 229 (252)
Q Consensus 155 ~~~~~~~~f~a~i~~~~~-----~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l 229 (252)
. ..+.++|.|+++++.. .++...||++.+|..+..+.+.+..- .....+.+||.+.+.++|
T Consensus 298 s-i~ph~kfeaevyvL~keeggrhtpff~~yrpqfyfRttDVtg~i~l~-------------eg~emvmpgdnv~~~veL 363 (394)
T COG0050 298 S-IKPHTKFEAEVYVLSKEEGGRHTPFFHGYRPQFYFRTTDVTGAITLP-------------EGVEMVMPGDNVKMVVEL 363 (394)
T ss_pred c-ccccceeeEEEEEEecccCCCCCCcccCccceeEEEeeeeeeeEecc-------------CCcceecCCCceEEEEEE
Confidence 7 7889999999999975 45789999999999999988754321 123789999999999999
Q ss_pred CceEEeeecCCCCCceeEEEEeC
Q psy10357 230 AGVICLDQFKLFPQMGRFTLRDE 252 (252)
Q Consensus 230 ~~~i~~~~~~~~~~lgrfilrd~ 252 (252)
..||++|... ||.+|..
T Consensus 364 i~pia~e~G~------rFaIreG 380 (394)
T COG0050 364 IHPIAMEEGL------RFAIREG 380 (394)
T ss_pred eeeeecCCCC------EEEEEeC
Confidence 9999999987 9999863
No 26
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=8e-29 Score=219.68 Aligned_cols=208 Identities=20% Similarity=0.248 Sum_probs=170.7
Q ss_pred HHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCC-CCCCCCCCCeeEEEeeEEc--
Q psy10357 5 VKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALP-SLNRKMDGPFLMPVVEKFK-- 81 (252)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~-~~~~~~~~p~~~~I~~~~~-- 81 (252)
++..+.++++.+- .++.+++++|+.+|+|+.++ -+.|..++ .+.++.++|||++||+.|+
T Consensus 121 ~e~~i~~Il~~l~---l~~~~i~~~s~~~g~GI~~L--------------k~~l~~L~~~~e~d~~~~fri~IDraFtVK 183 (447)
T COG3276 121 IEQKIKQILADLS---LANAKIFKTSAKTGRGIEEL--------------KNELIDLLEEIERDEQKPFRIAIDRAFTVK 183 (447)
T ss_pred HHHHHHHHHhhcc---cccccccccccccCCCHHHH--------------HHHHHHhhhhhhhccCCceEEEEeeEEEec
Confidence 4455566666555 37789999999999999875 45555544 4678899999999999995
Q ss_pred CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceec
Q psy10357 82 DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTAR 161 (252)
Q Consensus 82 g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~ 161 (252)
|.||||+|++.+|++++||++++.|.++.++|||||.+++++++|.||+||+|+|++++.++++||++|++++. ..+++
T Consensus 184 GvGTVVtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~~-~~v~~ 262 (447)
T COG3276 184 GVGTVVTGTVLSGEVKVGDKLYLSPINKEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPEP-LEVTT 262 (447)
T ss_pred cccEEEEeEEeeeeEEECCEEEEecCCCeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhcccEeccCCC-CCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875 47788
Q ss_pred EEEEEEEEecc-CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeee
Q psy10357 162 VFDAQIVILEH-KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQ 237 (252)
Q Consensus 162 ~f~a~i~~~~~-~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~ 237 (252)
.+.+.+.|.+. ..++.+++.+++|.|..+++|++..+... ......+.+..++...+.+..+.+.....
T Consensus 263 ~~~~~~~i~~~~~~~l~~~~~~hi~~g~~~~~~~i~~l~~~-------~~l~~~k~i~~~~~~~l~lr~~~a~~~~~ 332 (447)
T COG3276 263 RLIVELEIDPLFKKTLKQGQPVHIHVGLRSVTGRIVPLEKN-------AELNLVKPIALGDNDRLVLRDNSAVIKLA 332 (447)
T ss_pred EEEEEEEeccccccccCCCceEEEEEeccccceEeeecccc-------ceeeeecccccccCceEEEEcccceeeec
Confidence 88888888743 55689999999999999999998765321 00011145666666677777777766554
No 27
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.96 E-value=3.1e-28 Score=230.19 Aligned_cols=199 Identities=21% Similarity=0.297 Sum_probs=156.9
Q ss_pred HHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc--C
Q psy10357 5 VKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK--D 82 (252)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~--g 82 (252)
+..++..+++..++ ..+++++|+||++|+|+.++. . .|.+.++.++.+ ..+.||||+|+++|+ |
T Consensus 124 ~~~ei~~~l~~~~~--~~~~~ii~vSA~tG~GI~eL~--~--------~L~~l~~~~~~~--~~~~p~r~~Id~~f~v~G 189 (581)
T TIGR00475 124 TEMFMKQILNSYIF--LKNAKIFKTSAKTGQGIGELK--K--------ELKNLLESLDIK--RIQKPLRMAIDRAFKVKG 189 (581)
T ss_pred HHHHHHHHHHHhCC--CCCCcEEEEeCCCCCCchhHH--H--------HHHHHHHhCCCc--CcCCCcEEEEEEEEecCC
Confidence 45566677766554 236799999999999998763 1 244555555433 257899999999995 8
Q ss_pred CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceecE
Q psy10357 83 MGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARV 162 (252)
Q Consensus 83 ~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~ 162 (252)
.|++++|+|.+|++++||+|.++|.++.++|++|+.+++++++|.|||+|+++|++++..+++||++++++..+ +..
T Consensus 190 ~GtVv~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~~~~---~~~ 266 (581)
T TIGR00475 190 AGTVVTGTAFSGEVKVGDNLRLLPINHEVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLILTPEDP---KLR 266 (581)
T ss_pred cEEEEEEEEecceEecCCEEEECCCCceEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceEEcCCCCC---Cce
Confidence 99999999999999999999999999999999999999999999999999999999999999999888876542 222
Q ss_pred EEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCCC
Q psy10357 163 FDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFP 242 (252)
Q Consensus 163 f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~ 242 (252)
+.+.+.. ..++.+|+.+.+|+|+.++.|++..+ |.+ .+++.+++|+++...+
T Consensus 267 ~~~~~~~---~~~l~~~~~~~~~~gt~~~~~~i~~l----~~~------------------~~~l~l~~P~~~~~gd--- 318 (581)
T TIGR00475 267 VVVKFIA---EVPLLELQPYHIAHGMSVTTGKISLL----DKG------------------IALLTLDAPLILAKGD--- 318 (581)
T ss_pred EEEEEEc---CCccCCCCeEEEEEeceEEEEEEEEc----cCc------------------EEEEEECCceecCCCC---
Confidence 3333222 35689999999999999999998654 321 4566677777777655
Q ss_pred CceeEEEEe
Q psy10357 243 QMGRFTLRD 251 (252)
Q Consensus 243 ~lgrfilrd 251 (252)
||++|+
T Consensus 319 ---~~i~r~ 324 (581)
T TIGR00475 319 ---KLVLRD 324 (581)
T ss_pred ---EEEEEe
Confidence 777775
No 28
>KOG0463|consensus
Probab=99.91 E-value=3e-24 Score=186.80 Aligned_cols=185 Identities=22% Similarity=0.363 Sum_probs=157.7
Q ss_pred ccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCC-CCCCCCCeeEEEeeEEc--CCCeEEEEEEEE
Q psy10357 17 WTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSL-NRKMDGPFLMPVVEKFK--DMGTVVMGKVES 93 (252)
Q Consensus 17 ~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~-~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~ 93 (252)
.+....-+|++.+|..+|+|+.- |.-+|+-++.. +...+.|..|.|||+|. |.|++++|+..+
T Consensus 326 NF~Ser~CPIFQvSNVtG~NL~L--------------LkmFLNlls~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~ 391 (641)
T KOG0463|consen 326 NFPSERVCPIFQVSNVTGTNLPL--------------LKMFLNLLSLRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLS 391 (641)
T ss_pred cCccccccceEEeccccCCChHH--------------HHHHHhhcCcccccccCCCcceeecceEecCCcceEeecceee
Confidence 34446678999999999999853 33455555433 34567899999999995 999999999999
Q ss_pred eeeecCCEEEEecCC----ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceecEEEEEEEE
Q psy10357 94 GEAKKGQSLVLMPNR----TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVI 169 (252)
Q Consensus 94 G~l~~gd~v~i~p~~----~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~ 169 (252)
|.|+.+|.+.+.|.. .+..||||+..+-++..+..|+...+.|+.+...++++||++.++.-.|.++++|+|+|.+
T Consensus 392 GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~lkPqAsweFEaEILV 471 (641)
T KOG0463|consen 392 GTIRLNDILLLGPDSNGDFMPIPIKSIHRKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPKLKPQASWEFEAEILV 471 (641)
T ss_pred eeEEeccEEEecCCCCCCeeeeehhhhhhccccceEEeccchhhhHhhhcchhhhhcceEEecCCCCcceeeEEeeeEEE
Confidence 999999999999976 6889999999999999999999999999999999999999999999889999999999999
Q ss_pred eccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEe
Q psy10357 170 LEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEA 229 (252)
Q Consensus 170 ~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l 229 (252)
++|++.|.+.|+..+|||+.++.|.|.+ +++ +.|..||.+.|.+.+
T Consensus 472 LHHPTTIsprYQAMvHcGSiRQTAtivs----M~k----------dcLRTGDka~V~FrF 517 (641)
T KOG0463|consen 472 LHHPTTISPRYQAMVHCGSIRQTATIVS----MGK----------DCLRTGDKAKVQFRF 517 (641)
T ss_pred EecCCccCcchhheeeeccccceeeeee----cCh----------hhhhcCCcceEEEEE
Confidence 9999999999999999999999998765 343 445555666666554
No 29
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.88 E-value=2.3e-22 Score=145.98 Aligned_cols=87 Identities=29% Similarity=0.515 Sum_probs=83.3
Q ss_pred CCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccc
Q psy10357 69 DGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSP 146 (252)
Q Consensus 69 ~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~ 146 (252)
++||||+|+++|+ |.|++++|+|++|.++.||+|.++|++..++|+||+.+++++++|.|||+|+|.|++++..++++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v~~ 81 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDIKR 81 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHcCC
Confidence 5799999999996 78999999999999999999999999999999999999999999999999999999988899999
Q ss_pred eeEEeCCCC
Q psy10357 147 GFVLCDPNN 155 (252)
Q Consensus 147 G~vl~~~~~ 155 (252)
||+||++++
T Consensus 82 G~vl~~~~~ 90 (91)
T cd03693 82 GDVAGDSKN 90 (91)
T ss_pred cCEEccCCC
Confidence 999999865
No 30
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Probab=99.87 E-value=9.6e-22 Score=147.26 Aligned_cols=94 Identities=66% Similarity=0.998 Sum_probs=89.0
Q ss_pred eecEEEEEEEEeccC-CcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeee
Q psy10357 159 TARVFDAQIVILEHK-SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQ 237 (252)
Q Consensus 159 ~~~~f~a~i~~~~~~-~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~ 237 (252)
.+++|+|+|.||+++ ++|.+||++.+|+|+.+++|+|.+|.+.+|.++|+..+.+|++|++||.|.|+|++++|+|+|+
T Consensus 2 ~~~~F~A~i~vl~~~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~v~i~~~~pi~~e~ 81 (108)
T cd03704 2 VVTEFEAQIAILELKRSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETTGPICLEK 81 (108)
T ss_pred cccEEEEEEEEEeCCCCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEEEEEEeCCcEEEEE
Confidence 467899999999998 8899999999999999999999999999999888877778999999999999999999999999
Q ss_pred cCCCCCceeEEEEeC
Q psy10357 238 FKLFPQMGRFTLRDE 252 (252)
Q Consensus 238 ~~~~~~lgrfilrd~ 252 (252)
|++++.||||+|||+
T Consensus 82 ~~~~~~lGRf~lR~~ 96 (108)
T cd03704 82 FEDFPQLGRFTLRDE 96 (108)
T ss_pred cccCCCcccEEEEeC
Confidence 999999999999985
No 31
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=99.86 E-value=2.5e-21 Score=144.04 Aligned_cols=94 Identities=30% Similarity=0.610 Sum_probs=89.0
Q ss_pred eecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeec
Q psy10357 159 TARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQF 238 (252)
Q Consensus 159 ~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~ 238 (252)
.+++|+|+|.||+++.++.+||++.+|+++.+++|+|.+|.+.+|.++++..+..|++|++||.+.|+|.+++|+|+|+|
T Consensus 2 ~~~~f~A~v~~l~~~~pl~~G~~~~~~~~t~~~~~~I~~i~~~~d~~t~~~~~~~~~~l~~n~~a~v~l~~~~pi~~e~~ 81 (104)
T cd03705 2 VAESFTAQVIVLNHPGQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVKIVPQKPLVVETF 81 (104)
T ss_pred cccEEEEEEEEECCCCcccCCceEEEEeccceEeEEEEhhhhhhccccCCccccCcCccCCCCEEEEEEEECCeeEEEEc
Confidence 36789999999999888999999999999999999999999999999998776778999999999999999999999999
Q ss_pred CCCCCceeEEEEeC
Q psy10357 239 KLFPQMGRFTLRDE 252 (252)
Q Consensus 239 ~~~~~lgrfilrd~ 252 (252)
++++.||||+|||+
T Consensus 82 ~~~~~lgrf~lrd~ 95 (104)
T cd03705 82 SEYPPLGRFAVRDM 95 (104)
T ss_pred ccCCCccCEEEEeC
Confidence 99999999999985
No 32
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=99.86 E-value=5.7e-21 Score=142.80 Aligned_cols=94 Identities=31% Similarity=0.496 Sum_probs=89.0
Q ss_pred eecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeec
Q psy10357 159 TARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQF 238 (252)
Q Consensus 159 ~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~ 238 (252)
.++.|+|+|.|++++.++.+||++.+|+|+..++|+|.+|.+.+|.+|++..+..|++|++||.|.|+|.+++|+|+|+|
T Consensus 2 ~~~~f~A~v~~l~~~~pl~~G~~~~l~~~t~~~~~~v~~I~~~~d~~t~~~~~~~~~~l~~~~~a~v~l~~~~pi~~e~~ 81 (107)
T cd04093 2 SSTRFEARILTFNVDKPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVEIELERPIPLELF 81 (107)
T ss_pred cccEEEEEEEEECCCcccCCCCcEEEEecccEEeEEEEEeeEEeccCCCcEeccCCcCcCCCCEEEEEEEECCeEEEEEc
Confidence 46889999999998889999999999999999999999999999999998776778999999999999999999999999
Q ss_pred CCCCCceeEEEEeC
Q psy10357 239 KLFPQMGRFTLRDE 252 (252)
Q Consensus 239 ~~~~~lgrfilrd~ 252 (252)
++++.||||+|||+
T Consensus 82 ~~~~~~Grfilr~~ 95 (107)
T cd04093 82 KDNKELGRVVLRRD 95 (107)
T ss_pred ccCCCcceEEEEcC
Confidence 99999999999974
No 33
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.86 E-value=3e-21 Score=137.43 Aligned_cols=82 Identities=57% Similarity=1.059 Sum_probs=79.3
Q ss_pred CeeEEEeeEEcCCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEE
Q psy10357 71 PFLMPVVEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVL 150 (252)
Q Consensus 71 p~~~~I~~~~~g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl 150 (252)
||||+|+++|+..|++++|+|++|.+++||+|.++|++..++|++|+.++.++++|.|||+|+++|++++..++++|++|
T Consensus 1 plr~~I~~v~~~~g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~~G~vl 80 (82)
T cd04089 1 PLRLPIIDKYKDMGTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISPGFVL 80 (82)
T ss_pred CeEEEEEeEEEcCCEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEECCEECCEECCCCEEEEEecCCCHHHCCCCCEE
Confidence 79999999999779999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred eC
Q psy10357 151 CD 152 (252)
Q Consensus 151 ~~ 152 (252)
|+
T Consensus 81 ~~ 82 (82)
T cd04089 81 CS 82 (82)
T ss_pred eC
Confidence 85
No 34
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.85 E-value=6.8e-21 Score=135.89 Aligned_cols=82 Identities=52% Similarity=0.935 Sum_probs=78.5
Q ss_pred CeeEEEeeEEc-CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeE
Q psy10357 71 PFLMPVVEKFK-DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV 149 (252)
Q Consensus 71 p~~~~I~~~~~-g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v 149 (252)
||||+|+++|+ ..|++++|+|++|++++||+|.++|++..++|++|+.++.++++|.|||+|+++|++++..++++|++
T Consensus 1 p~r~~V~~v~~~~~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~~G~v 80 (83)
T cd03698 1 PFRLPISDKYKDQGGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISPGDV 80 (83)
T ss_pred CeEEEEEeEEEcCCCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEECCeECCEECCCCEEEEEECCCCHHHCCCCCE
Confidence 79999999996 38999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred EeC
Q psy10357 150 LCD 152 (252)
Q Consensus 150 l~~ 152 (252)
||+
T Consensus 81 l~~ 83 (83)
T cd03698 81 LCS 83 (83)
T ss_pred EeC
Confidence 985
No 35
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=99.84 E-value=2.3e-20 Score=138.59 Aligned_cols=91 Identities=18% Similarity=0.271 Sum_probs=84.5
Q ss_pred eecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeec
Q psy10357 159 TARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQF 238 (252)
Q Consensus 159 ~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~ 238 (252)
.++.|+|+|.||+. .++.+|+.+.+|+|+.+++|+|++|.+++|.++++.. .|++|+.||.|.|+|++++|+|+|+|
T Consensus 2 ~~~~f~a~i~~l~~-~pl~~G~~~~l~~~t~~~~~~i~~i~~~id~~t~~~~--~~~~l~~n~~a~v~i~~~~pi~~d~~ 78 (103)
T cd04095 2 VSDQFAATLVWMDE-EPLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLEHE--AADTLELNDIGRVELSLSKPLAFDPY 78 (103)
T ss_pred ccceeeEEEEEecC-cccCCCCEEEEEEcCCEEEEEEeeeeEEEcCCCCCcc--CCCEECCCCeEEEEEEeCCccEecch
Confidence 46789999999994 4799999999999999999999999999999988754 67999999999999999999999999
Q ss_pred CCCCCceeEEEEeC
Q psy10357 239 KLFPQMGRFTLRDE 252 (252)
Q Consensus 239 ~~~~~lgrfilrd~ 252 (252)
++++.||||+|+|+
T Consensus 79 ~~~~~~GrfiliD~ 92 (103)
T cd04095 79 RENRATGSFILIDR 92 (103)
T ss_pred hhCCCcceEEEEEC
Confidence 99999999999874
No 36
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.82 E-value=5.5e-20 Score=132.29 Aligned_cols=81 Identities=30% Similarity=0.487 Sum_probs=77.1
Q ss_pred eeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCC----ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCcc
Q psy10357 72 FLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNR----TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVS 145 (252)
Q Consensus 72 ~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~----~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~ 145 (252)
|+|+|+++|+ |.|++++|+|++|.+++||++.++|.+ ..++|++|+.++.++++|.|||+++++|++++..+++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~ 80 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLR 80 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHcC
Confidence 6899999995 889999999999999999999999984 6899999999999999999999999999999999999
Q ss_pred ceeEEeC
Q psy10357 146 PGFVLCD 152 (252)
Q Consensus 146 ~G~vl~~ 152 (252)
+|++||+
T Consensus 81 ~G~vl~~ 87 (87)
T cd03694 81 KGMVLVS 87 (87)
T ss_pred CccEEeC
Confidence 9999984
No 37
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.82 E-value=4.1e-20 Score=133.03 Aligned_cols=83 Identities=31% Similarity=0.565 Sum_probs=78.1
Q ss_pred eeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecC--CceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccce
Q psy10357 72 FLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPN--RTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPG 147 (252)
Q Consensus 72 ~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~--~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G 147 (252)
|||+|+++|+ +.|++++|+|++|++++||+|.++|. +..++|+||+.+++++++|.|||+|+++|++++..+++||
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~rG 80 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVERG 80 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcCCc
Confidence 7999999996 78999999999999999999999997 6789999999999999999999999999999888999999
Q ss_pred eEEeCCC
Q psy10357 148 FVLCDPN 154 (252)
Q Consensus 148 ~vl~~~~ 154 (252)
++||+++
T Consensus 81 ~vl~~~~ 87 (87)
T cd03697 81 MVLAKPG 87 (87)
T ss_pred cEEecCC
Confidence 9999863
No 38
>KOG1143|consensus
Probab=99.82 E-value=5.3e-19 Score=154.04 Aligned_cols=184 Identities=20% Similarity=0.368 Sum_probs=158.9
Q ss_pred cCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCC------CCCCCeeEEEeeEEc--CCCeEEEEEE
Q psy10357 20 RQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNR------KMDGPFLMPVVEKFK--DMGTVVMGKV 91 (252)
Q Consensus 20 ~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~------~~~~p~~~~I~~~~~--g~G~vv~G~v 91 (252)
.++.+|++.+|+.+|+++.- |...|+.+++.-. -...|..|.|++.|. ..|.++.|.+
T Consensus 359 s~nivPif~vSsVsGegl~l--------------l~~fLn~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~L 424 (591)
T KOG1143|consen 359 SGNIVPIFAVSSVSGEGLRL--------------LRTFLNCLSPAGTAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGML 424 (591)
T ss_pred cCCceeEEEEeecCccchhH--------------HHHHHhhcCCcCChHHHHHHhcCcceeeHhHeecCCccccccccee
Confidence 36788999999999999854 3455666654321 235688899999997 7899999999
Q ss_pred EEeeeecCCEEEEecCC----ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceecEEEEEE
Q psy10357 92 ESGEAKKGQSLVLMPNR----TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQI 167 (252)
Q Consensus 92 ~~G~l~~gd~v~i~p~~----~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i 167 (252)
.+|.++.|+.+.+.|.. .+.+|-||+.++.++..+.||+...|.|..-|..-+++||++..++..|+.+..|+|++
T Consensus 425 s~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rnr~acrvvraGqaAslsl~d~D~~~LR~GMVl~~~~~nP~~c~~F~A~~ 504 (591)
T KOG1143|consen 425 SEGQLHEGADVLVGPMKDGTFEKITVGSIRRNRQACRVVRAGQAASLSLNDPDGVSLRRGMVLAEIDHNPPVCYEFTANL 504 (591)
T ss_pred eeceeccCceeEeecCCCCceeEEEeeeeeccccceeeecCccceeeeccCCCccchhcceEEeecCCCCceEEEEeeee
Confidence 99999999999999987 68999999999999999999999999998666677999999999988889999999999
Q ss_pred EEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeC
Q psy10357 168 VILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAA 230 (252)
Q Consensus 168 ~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~ 230 (252)
.++-|.+.|..|++..+|+|+.++.|.|+.|... +.|..|+.|.|.+.+.
T Consensus 505 ~lLfHaT~i~~GFQ~TVhiGsvrqTAvi~~I~~~-------------d~lrtg~~AvV~f~F~ 554 (591)
T KOG1143|consen 505 LLLFHATYICEGFQATVHIGSVRQTAVITHIDDA-------------DCLRTGKWAVVKFCFA 554 (591)
T ss_pred hhhhhhHhheecceEEEEEcceeeeeeeeeeccc-------------ccccCCceEEEEEEec
Confidence 9999999999999999999999999998887321 5678888888888754
No 39
>KOG0461|consensus
Probab=99.81 E-value=4.1e-20 Score=159.51 Aligned_cols=220 Identities=16% Similarity=0.157 Sum_probs=162.3
Q ss_pred chhHHHHHHhcccccccccCceeEEEecccccC----CcccCCCCCCcCCCCccCchHHhhcc-CCCCCCCCCCCeeEEE
Q psy10357 2 RESVKYAVSFWQPKLWTVRQEILLIISPSGQMG----QNLKEPVGPEICTWWKGGAFIPFIDA-LPSLNRKMDGPFLMPV 76 (252)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G----~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~~~~I 76 (252)
+|....+|++-|+..++ ..++|++++|+..| +.+.+ |.++|.. +-.|+|+.+.||.|.|
T Consensus 144 i~k~~kk~~KtLe~t~f--~g~~PI~~vsa~~G~~~~~~i~e--------------L~e~l~s~if~P~Rd~~gpflm~v 207 (522)
T KOG0461|consen 144 IEKSAKKVRKTLESTGF--DGNSPIVEVSAADGYFKEEMIQE--------------LKEALESRIFEPKRDEEGPFLMAV 207 (522)
T ss_pred HHHHHHHHHHHHHhcCc--CCCCceeEEecCCCccchhHHHH--------------HHHHHHHhhcCCCcCCCCCeEEEe
Confidence 35667789999999997 56789999999999 44443 6677765 8889999999999999
Q ss_pred eeEE--cCCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357 77 VEKF--KDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN 154 (252)
Q Consensus 77 ~~~~--~g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 154 (252)
|++| +|.|+|.+|+|.+|.++.|+.+.+-..+...+|||+|+++.++.+|.+||++++.+...+..-++||- +|.++
T Consensus 208 DHCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~klleRgi-~~~pg 286 (522)
T KOG0461|consen 208 DHCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMFKQRVTSAAAGDRAGFCVTQFDEKLLERGI-CGPPG 286 (522)
T ss_pred eeeEEeccCceEEeeeEEEeEEecCcEEeecccchhhhhhhHHHHhhhhhhhhcccceeeeeeccCHHHHhccc-cCCCc
Confidence 9999 59999999999999999999999999999999999999999999999999999999988888899985 36665
Q ss_pred CCcceecEEEEEEEEecc-CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCC----------cccccCCceecCCCEE
Q psy10357 155 NPARTARVFDAQIVILEH-KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTG----------EKSKTRPRFVKQDQIA 223 (252)
Q Consensus 155 ~~~~~~~~f~a~i~~~~~-~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg----------~~~~~~~~~l~~g~~~ 223 (252)
. ..+....-+.+....- .++|..-...++.+|...+.+++.=+ ...|..+. .+...-|..+.+++..
T Consensus 287 ~-Lk~~~avl~~vepI~yfr~~i~sk~K~Hi~VgheTVMa~~~ff-~d~d~~~~tf~~~kEye~~E~d~~Pa~~~~~~~~ 364 (522)
T KOG0461|consen 287 T-LKSTKAVLATVEPIQYFRKSINSKSKIHIAVGHETVMAECQFF-KDTDGTTSTFQLDKEYENGEFDMLPALLAPCDVI 364 (522)
T ss_pred c-cceeeeeeEeecchHHHhhhhhhcceEEEEehhhhhhhheEEe-eccCCcccccccchhhhccccccChhhcCCchhe
Confidence 5 3333333333222211 22344444455555555555554322 11222110 1112245667788888
Q ss_pred EEEEEeCceEEeeecCC
Q psy10357 224 IMRLEAAGVICLDQFKL 240 (252)
Q Consensus 224 ~v~l~l~~~i~~~~~~~ 240 (252)
.+=+++++|+.+..|++
T Consensus 365 ~aL~~FEkpv~~P~~s~ 381 (522)
T KOG0461|consen 365 QALFSFEKPVFLPEYSN 381 (522)
T ss_pred eeeeeecccccCccccc
Confidence 88899999999888764
No 40
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.80 E-value=5.3e-19 Score=125.41 Aligned_cols=79 Identities=28% Similarity=0.424 Sum_probs=74.5
Q ss_pred eeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeE
Q psy10357 72 FLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV 149 (252)
Q Consensus 72 ~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v 149 (252)
|||+|.|+|+ +.|+.++|+|++|.+++||+|.++|.+..++|++|+.+++++++|.|||+|+|+|+ +..++++|++
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~--~~~~i~~G~v 78 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETFDGELDEAGAGESVTLTLE--DEIDVSRGDV 78 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEECCcEeCEEcCCCEEEEEEC--CccccCCCCE
Confidence 7999999997 46778999999999999999999999999999999999999999999999999998 5788999999
Q ss_pred EeC
Q psy10357 150 LCD 152 (252)
Q Consensus 150 l~~ 152 (252)
||.
T Consensus 79 l~~ 81 (81)
T cd03695 79 IVA 81 (81)
T ss_pred EeC
Confidence 984
No 41
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.80 E-value=3.8e-19 Score=126.87 Aligned_cols=81 Identities=28% Similarity=0.515 Sum_probs=77.3
Q ss_pred eeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeE
Q psy10357 72 FLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV 149 (252)
Q Consensus 72 ~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v 149 (252)
|||+|+++|+ +.|++++|+|++|.+++||++.++|++...+|++|+.+++++++|.|||+|++.|++++..++.+|++
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~~G~v 80 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERGDV 80 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcCCccE
Confidence 7999999996 78999999999999999999999999999999999999999999999999999999888789999999
Q ss_pred EeC
Q psy10357 150 LCD 152 (252)
Q Consensus 150 l~~ 152 (252)
||.
T Consensus 81 l~~ 83 (83)
T cd03696 81 LSS 83 (83)
T ss_pred EcC
Confidence 974
No 42
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.7e-17 Score=142.23 Aligned_cols=195 Identities=19% Similarity=0.228 Sum_probs=163.2
Q ss_pred HHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CCCCCCCCCCCeeEEEeeEEc---
Q psy10357 6 KYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LPSLNRKMDGPFLMPVVEKFK--- 81 (252)
Q Consensus 6 ~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~~--- 81 (252)
+.++.+|+|.... ++.|+||+||..+.|++. |+++|++ ||.|.++.++|++|.|.++|+
T Consensus 162 y~qIk~FvkGt~A---e~aPIIPiSA~~~~NIDa--------------l~e~i~~~IptP~rd~~~~p~m~v~RSFDVNk 224 (415)
T COG5257 162 YEQIKEFVKGTVA---ENAPIIPISAQHKANIDA--------------LIEAIEKYIPTPERDLDKPPRMYVARSFDVNK 224 (415)
T ss_pred HHHHHHHhccccc---CCCceeeehhhhccCHHH--------------HHHHHHHhCCCCccCCCCCceEEEEeecccCC
Confidence 4566677776665 888999999999999975 6777755 999999999999999999994
Q ss_pred -C------CCeEEEEEEEEeeeecCCEEEEecCC------------ceEEEEEEEeCCccceeecCCCeEEEEEe---ee
Q psy10357 82 -D------MGTVVMGKVESGEAKKGQSLVLMPNR------------TPVIVDQLWSDDEEVSSVGPGENIKVKLK---GI 139 (252)
Q Consensus 82 -g------~G~vv~G~v~~G~l~~gd~v~i~p~~------------~~~~V~sI~~~~~~v~~a~aG~~v~l~l~---~~ 139 (252)
| .|-|+.|.+.+|.+++||++.+.|.= ...+|.||+....++++|.+|-.+++..+ .+
T Consensus 225 PGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag~~~~~ea~PGGLvgvGT~lDP~l 304 (415)
T COG5257 225 PGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAGGEDVEEARPGGLVGVGTKLDPTL 304 (415)
T ss_pred CCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeCCeeeeeccCCceEEEecccCcch
Confidence 3 68899999999999999999999963 24689999999999999999999998654 34
Q ss_pred CCCCccceeEEeCCCCCcceecEEEEEEEEecc---------CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCccc
Q psy10357 140 EEDDVSPGFVLCDPNNPARTARVFDAQIVILEH---------KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKS 210 (252)
Q Consensus 140 ~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~---------~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~ 210 (252)
.+.|--.|.++..++..|+....|+.+..+|.. -.+|+.|....+.+|+...-+.|.+..
T Consensus 305 tKaD~L~G~V~G~pG~lPpv~~~~~ie~~LL~RvvG~~~e~kvepik~~E~Lml~VGtatT~GvV~~~k----------- 373 (415)
T COG5257 305 TKADALVGQVVGKPGTLPPVWTSIRIEYHLLERVVGTKEELKVEPIKTNEVLMLNVGTATTVGVVTSAK----------- 373 (415)
T ss_pred hhhhhhccccccCCCCCCCceEEEEEEeeehhhhhCcccccccccccCCCeEEEEeecceeEEEEEEec-----------
Confidence 556777899999999888888999999999973 126899999999999999888776641
Q ss_pred ccCCceecCCCEEEEEEEeCceEEeeecC
Q psy10357 211 KTRPRFVKQDQIAIMRLEAAGVICLDQFK 239 (252)
Q Consensus 211 ~~~~~~l~~g~~~~v~l~l~~~i~~~~~~ 239 (252)
.-.+++.|.+|+|.+..+
T Consensus 374 -----------~d~~ev~Lk~Pvcae~g~ 391 (415)
T COG5257 374 -----------KDEIEVKLKRPVCAEIGE 391 (415)
T ss_pred -----------CceEEEEeccceecCCCC
Confidence 126688899999988765
No 43
>KOG0052|consensus
Probab=99.77 E-value=8.2e-19 Score=154.33 Aligned_cols=213 Identities=24% Similarity=0.415 Sum_probs=174.1
Q ss_pred eEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCC-CCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCC
Q psy10357 24 LLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNR-KMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQ 100 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~-~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd 100 (252)
+..+|++....++...+. ....|..+ +..+..-.+ ....|.-. ..++|+ |.| +..|.++.+.
T Consensus 142 v~qliv~v~k~D~~~~~~--s~~r~~ei------~k~~~~~~~~~g~n~~~~-~~~~~~~~g~~------~~t~iie~~~ 206 (391)
T KOG0052|consen 142 VKQLIVGVNKMDSTEPPY--SEARYEEI------KKEVSSYIKKIGYNPAAV-LQDVYKIGGIG------VETGISEPGM 206 (391)
T ss_pred ceeeeEEeecccccCCCc--cccchhhh------heeeeeeeeccccCChhh-hccceeeccee------eeeeeccCcc
Confidence 566777777777765443 33444332 222211110 11112111 445554 444 8889999999
Q ss_pred EEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCC-CCcceecEEEEEEEEeccCCcCCCC
Q psy10357 101 SLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN-NPARTARVFDAQIVILEHKSIICAG 179 (252)
Q Consensus 101 ~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~-~~~~~~~~f~a~i~~~~~~~~i~~g 179 (252)
.+...|.....++++..++++.-.++.+|++|+++..++...++.+|+++.+.. .|+.....|.+++.+++++..+..|
T Consensus 207 ~v~~~~~~~~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~dsK~~p~~~~~g~t~qviilnhpgqis~g 286 (391)
T KOG0052|consen 207 DVTFAPSGVTTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGDSKNDPPVEAAGFTAQVIILNHPGQISVG 286 (391)
T ss_pred ceeccccccccccccEEEEeccCccCCCcceeeeecccCccCcccccceecccccCCccccccceeeEEEecCccccCCC
Confidence 999999999999999999998888999999999999999999999999998874 4556667899999999999999999
Q ss_pred CEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCCCCceeEEEEe
Q psy10357 180 YSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRD 251 (252)
Q Consensus 180 ~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~lgrfilrd 251 (252)
|.+.|.||+.+++|++..|..++|..+|+..+..|++++.++.+.+.+.+.+|+|+|.|++++.||||.+||
T Consensus 287 y~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~~daai~~~vp~kp~~ve~~~~~~~l~rfav~d 358 (391)
T KOG0052|consen 287 YAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKSGDAAIVEMVPGKPLCVESFSDYVPLGRFAVRD 358 (391)
T ss_pred ccccccccccceeeehhhchhhhhcCCceeecCCCccccCCcceeeeeccCCccccccccccccccchhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997
No 44
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=99.76 E-value=8.5e-18 Score=124.30 Aligned_cols=92 Identities=29% Similarity=0.494 Sum_probs=84.6
Q ss_pred eecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeec
Q psy10357 159 TARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQF 238 (252)
Q Consensus 159 ~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~ 238 (252)
.+++|+|++.+++++.++.+|+++.+|+|+.+++|+|..|.+++|.++.. +..++.|++||.+.|+|.+++|+|+|+|
T Consensus 2 ~~~~f~a~i~~l~~~~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~~~--~~~~~~l~~~~~a~v~l~~~~pi~~e~~ 79 (102)
T cd01513 2 AVDKFVAEIYVLDHPEPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKTEE--KKPPEFLKSGERGIVEVELQKPVALETF 79 (102)
T ss_pred cccEEEEEEEEECCCcccCCCCcEEEEeecCEEeEEEEeeeeecccCccc--ccCchhhcCCCEEEEEEEECCceEEEEh
Confidence 46899999999999889999999999999999999999999999987433 3467999999999999999999999999
Q ss_pred CCCCCceeEEEEeC
Q psy10357 239 KLFPQMGRFTLRDE 252 (252)
Q Consensus 239 ~~~~~lgrfilrd~ 252 (252)
++++.+|||+|||.
T Consensus 80 ~~~~~~grfilr~~ 93 (102)
T cd01513 80 SENQEGGRFALRDG 93 (102)
T ss_pred hhCCCcccEEEEeC
Confidence 99999999999984
No 45
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=99.75 E-value=1.3e-17 Score=122.82 Aligned_cols=86 Identities=38% Similarity=0.736 Sum_probs=77.6
Q ss_pred CcceecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEe
Q psy10357 156 PARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICL 235 (252)
Q Consensus 156 ~~~~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~ 235 (252)
|++.+++|+|+|.+|++++++.+||++.+|+++.+++|++.+|...+| +|++. |++|++||.|.|+|++++|+|+
T Consensus 1 ~~k~~~~f~A~v~vl~~~~~i~~Gy~~~~~~~t~~~~~~i~~i~~~~~--~~~~~---p~~l~~g~~a~v~l~~~~pi~v 75 (99)
T PF03143_consen 1 PIKAVNRFEAQVIVLDHPKPISPGYQPVLHIHTADVPCRIVKIISKID--TGKKK---PKFLKPGDRAVVELEFQKPICV 75 (99)
T ss_dssp SSEEEEEEEEEEEESSGSS-BETTEEEEEEETTEEEEEEEEEEEEEES--TTTEE----SEB-TTEEEEEEEEEEEEEEE
T ss_pred CCcccCEEEEEEEEEcCCccccCCCccceEEeeceeeEEEEeeeeccc--ccccc---ccccccccccccceeeccceee
Confidence 567899999999999999999999999999999999999999999998 55544 8999999999999999999999
Q ss_pred eecCCCCCceeEEEEeC
Q psy10357 236 DQFKLFPQMGRFTLRDE 252 (252)
Q Consensus 236 ~~~~~~~~lgrfilrd~ 252 (252)
|.|+ ||+|||+
T Consensus 76 e~~~------Rf~lR~~ 86 (99)
T PF03143_consen 76 EPFS------RFILRDG 86 (99)
T ss_dssp TTTT------EEEEEET
T ss_pred ecCc------eEEEccC
Confidence 9998 9999985
No 46
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.62 E-value=6e-15 Score=139.98 Aligned_cols=146 Identities=24% Similarity=0.298 Sum_probs=112.2
Q ss_pred hHHHHHHhccccccccc-CceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc-
Q psy10357 4 SVKYAVSFWQPKLWTVR-QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK- 81 (252)
Q Consensus 4 ~~~~~~~~~l~~~~~~~-~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~- 81 (252)
.+..++..++..++.-+ .-.+|++++||++|++..++. ...|...+.|..+++.+|.|..+.+.||+|.|++++.
T Consensus 135 ~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~---~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d 211 (594)
T TIGR01394 135 EVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLD---DPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYD 211 (594)
T ss_pred HHHHHHHHHHHhhccccccccCcEEechhhcCcccccCc---ccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEee
Confidence 35566777776666411 225799999999999765542 1122222334556778998888889999999999975
Q ss_pred -CCCeEEEEEEEEeeeecCCEEEEecCC---ceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCC
Q psy10357 82 -DMGTVVMGKVESGEAKKGQSLVLMPNR---TPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDP 153 (252)
Q Consensus 82 -g~G~vv~G~v~~G~l~~gd~v~i~p~~---~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 153 (252)
+.|+++.|+|.+|+|+.||.|.+.|.+ ...+|++|+.+ +.++++|.|||+|++. ++ .++.+||+||++
T Consensus 212 ~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~--gl--~~i~~Gdtl~~~ 287 (594)
T TIGR01394 212 EYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVA--GL--EDINIGETIADP 287 (594)
T ss_pred CCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEe--CC--cccCCCCEEeCC
Confidence 789999999999999999999999974 25789999876 5689999999999874 44 578999999998
Q ss_pred CCC
Q psy10357 154 NNP 156 (252)
Q Consensus 154 ~~~ 156 (252)
+.+
T Consensus 288 ~~~ 290 (594)
T TIGR01394 288 EVP 290 (594)
T ss_pred Ccc
Confidence 753
No 47
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.62 E-value=3e-15 Score=134.23 Aligned_cols=182 Identities=18% Similarity=0.241 Sum_probs=136.3
Q ss_pred eEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCE
Q psy10357 24 LLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQS 101 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~ 101 (252)
...+.+||++|.|+.+. |.+.++.+|+|+.+.+.|++..|.|+|. ..|.++.-||..|++++||+
T Consensus 161 ~dav~~SAKtG~gI~~i-------------Le~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdk 227 (603)
T COG0481 161 SDAVLVSAKTGIGIEDV-------------LEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDK 227 (603)
T ss_pred chheeEecccCCCHHHH-------------HHHHHhhCCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCCCE
Confidence 36889999999999885 6778899999999999999999999874 67999999999999999999
Q ss_pred EEEecCCceEEEEEEEeCC---ccceeecCCCeEEEEEeee-CCCCccceeEEeCCCCCcceecEEEEEEEEeccCCcCC
Q psy10357 102 LVLMPNRTPVIVDQLWSDD---EEVSSVGPGENIKVKLKGI-EEDDVSPGFVLCDPNNPARTARVFDAQIVILEHKSIIC 177 (252)
Q Consensus 102 v~i~p~~~~~~V~sI~~~~---~~v~~a~aG~~v~l~l~~~-~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~i~ 177 (252)
+.++.+++...|..+..+. .+.++..+|| |+.-..++ +..|.+.||+|+..++|... ..
T Consensus 228 i~~m~tg~~y~V~evGvftP~~~~~~~L~aGe-VG~~~a~iK~v~d~~VGDTiT~~~~p~~e----------------~L 290 (603)
T COG0481 228 IRMMSTGKEYEVDEVGIFTPKMVKVDELKAGE-VGYIIAGIKDVRDARVGDTITLASNPATE----------------PL 290 (603)
T ss_pred EEEEecCCEEEEEEEeeccCCccccccccCCc-eeEEEEeeeecccCcccceEeccCCCccc----------------cC
Confidence 9999999999999999874 4677899999 44444444 44789999999976654322 24
Q ss_pred CCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCCCCc
Q psy10357 178 AGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQM 244 (252)
Q Consensus 178 ~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~l 244 (252)
+||.... +..+..+ +.+|....+.++.....|..|| +..+++++...++--.-.+.-|
T Consensus 291 pGfk~~~-------P~Vf~Gl-yPid~~dye~LrdAleKL~LND-asl~~E~EtS~ALGfGfRcGFL 348 (603)
T COG0481 291 PGFKEVK-------PMVFAGL-YPVDSDDYEDLRDALEKLQLND-ASLTYEPETSQALGFGFRCGFL 348 (603)
T ss_pred CCCCcCC-------ceEEEee-cccChhHHHHHHHHHHhccccc-ceeeeccccchhccCceeehhh
Confidence 4554322 2222333 5677766777766667888998 4566776665555443333333
No 48
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.58 E-value=1.9e-14 Score=136.75 Aligned_cols=117 Identities=21% Similarity=0.325 Sum_probs=101.5
Q ss_pred EEEecccccCCcccCCCCCCcCCCCccCchHHh-hccCCCCCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCE
Q psy10357 25 LIISPSGQMGQNLKEPVGPEICTWWKGGAFIPF-IDALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQS 101 (252)
Q Consensus 25 ~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~-l~~i~~~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~ 101 (252)
+++++||++|.|+.+ |++. ++.+|.|..+.+.||++.|.++|. +.|+++.|+|.+|+|+.||.
T Consensus 156 ~vi~vSAktG~GI~~--------------Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~ 221 (595)
T TIGR01393 156 EAILASAKTGIGIEE--------------ILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDK 221 (595)
T ss_pred eEEEeeccCCCCHHH--------------HHHHHHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCE
Confidence 589999999999976 4454 467888888889999999999975 78999999999999999999
Q ss_pred EEEecCCceEEEEEEEeCC---ccceeecCCCeEEEEEeeeC-CCCccceeEEeCCCCC
Q psy10357 102 LVLMPNRTPVIVDQLWSDD---EEVSSVGPGENIKVKLKGIE-EDDVSPGFVLCDPNNP 156 (252)
Q Consensus 102 v~i~p~~~~~~V~sI~~~~---~~v~~a~aG~~v~l~l~~~~-~~~i~~G~vl~~~~~~ 156 (252)
|.++|.++..+|.+|+.+. .++++|.||| |+..++++. ..++..||+|++.++|
T Consensus 222 v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~~~~~~~~~~~~Gdtl~~~~~~ 279 (595)
T TIGR01393 222 IRFMSTGKEYEVDEVGVFTPKLTKTDELSAGE-VGYIIAGIKDVSDVRVGDTITHVKNP 279 (595)
T ss_pred EEEecCCCeeEEeEEEEecCCceECCEEcCCC-EEEEeccccccCccCCCCEEECCCCc
Confidence 9999999999999999876 6789999999 666667664 4789999999988654
No 49
>PRK10218 GTP-binding protein; Provisional
Probab=99.55 E-value=5.5e-14 Score=133.43 Aligned_cols=142 Identities=18% Similarity=0.279 Sum_probs=107.4
Q ss_pred HHHHHHhcccccccc-cCceeEEEecccccCCcccCCCCC--CcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc
Q psy10357 5 VKYAVSFWQPKLWTV-RQEILLIISPSGQMGQNLKEPVGP--EICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK 81 (252)
Q Consensus 5 ~~~~~~~~l~~~~~~-~~~~~~~ipiS~~~G~ni~~~~~~--~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~ 81 (252)
+..++..++..+... ...++|++|+||++|+|..+.... ...+| |..+++.+|+|.++.+.||+|.|++++.
T Consensus 140 vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~L-----ld~Ii~~iP~P~~~~~~Pl~~~V~k~~~ 214 (607)
T PRK10218 140 VVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPL-----YQAIVDHVPAPDVDLDGPFQMQISQLDY 214 (607)
T ss_pred HHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHH-----HHHHHHhCCCCCCCCCCCeEEEEEeeEe
Confidence 445556665554432 134689999999999976544210 12333 3356788999988888999999999964
Q ss_pred --CCCeEEEEEEEEeeeecCCEEEEecC-Cc--eEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeC
Q psy10357 82 --DMGTVVMGKVESGEAKKGQSLVLMPN-RT--PVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCD 152 (252)
Q Consensus 82 --g~G~vv~G~v~~G~l~~gd~v~i~p~-~~--~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 152 (252)
+.|+++.|||.+|+|+.||.|.+.+. ++ ..+|.+|..+ ..++++|.|||+|++ .+ ..++..||+||+
T Consensus 215 d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai--~g--l~~~~~GdTl~~ 290 (607)
T PRK10218 215 NSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAI--TG--LGELNISDTVCD 290 (607)
T ss_pred cCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEE--EC--ccccccCcEEec
Confidence 68999999999999999999999887 44 5778888654 568999999999985 43 457889999998
Q ss_pred CCC
Q psy10357 153 PNN 155 (252)
Q Consensus 153 ~~~ 155 (252)
++.
T Consensus 291 ~~~ 293 (607)
T PRK10218 291 TQN 293 (607)
T ss_pred CCC
Confidence 865
No 50
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.52 E-value=1e-13 Score=132.00 Aligned_cols=117 Identities=23% Similarity=0.334 Sum_probs=100.1
Q ss_pred EEEecccccCCcccCCCCCCcCCCCccCchHHhh-ccCCCCCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCE
Q psy10357 25 LIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFI-DALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQS 101 (252)
Q Consensus 25 ~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l-~~i~~~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~ 101 (252)
.++++||++|+|+.+ |++.| +.+|+|..+.+.||++.|.++|. +.|+++.|+|.+|+|+.||.
T Consensus 160 ~vi~iSAktG~GI~~--------------Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~ 225 (600)
T PRK05433 160 DAVLVSAKTGIGIEE--------------VLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDK 225 (600)
T ss_pred eEEEEecCCCCCHHH--------------HHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCE
Confidence 589999999999976 45554 66888888889999999999874 78999999999999999999
Q ss_pred EEEecCCceEEEEEEEeC---CccceeecCCCeEEEEEeeeC-CCCccceeEEeCCCCC
Q psy10357 102 LVLMPNRTPVIVDQLWSD---DEEVSSVGPGENIKVKLKGIE-EDDVSPGFVLCDPNNP 156 (252)
Q Consensus 102 v~i~p~~~~~~V~sI~~~---~~~v~~a~aG~~v~l~l~~~~-~~~i~~G~vl~~~~~~ 156 (252)
|.+.|.+...+|.+|..+ ..++++|.||| ++..++++. ..+++.||+|++.+.+
T Consensus 226 i~~~~~~~~~~V~~i~~~~~~~~~v~~~~aGd-Ig~i~~~ik~~~~~~~Gdtl~~~~~~ 283 (600)
T PRK05433 226 IKMMSTGKEYEVDEVGVFTPKMVPVDELSAGE-VGYIIAGIKDVRDARVGDTITLAKNP 283 (600)
T ss_pred EEEecCCceEEEEEeeccCCCceECcEEcCCC-EEEEecccccccccCCCCEEECCCCc
Confidence 999999999999999875 46889999999 555556653 4789999999988654
No 51
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=99.47 E-value=7e-13 Score=97.59 Aligned_cols=86 Identities=23% Similarity=0.323 Sum_probs=76.8
Q ss_pred CCCCeeEEEeeEEc----------CCCeEEEEEEEEeeeecCCEEEEecC-------C-----ceEEEEEEEeCCcccee
Q psy10357 68 MDGPFLMPVVEKFK----------DMGTVVMGKVESGEAKKGQSLVLMPN-------R-----TPVIVDQLWSDDEEVSS 125 (252)
Q Consensus 68 ~~~p~~~~I~~~~~----------g~G~vv~G~v~~G~l~~gd~v~i~p~-------~-----~~~~V~sI~~~~~~v~~ 125 (252)
.++|++|.|.++|. ++|.|+.|++.+|.+++||++.|.|. + ...+|.||+.++..+++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~~ 81 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQE 81 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCccccE
Confidence 57899999999994 47999999999999999999999976 1 46799999999999999
Q ss_pred ecCCCeEEE---EEeeeCCCCccceeEEeCC
Q psy10357 126 VGPGENIKV---KLKGIEEDDVSPGFVLCDP 153 (252)
Q Consensus 126 a~aG~~v~l---~l~~~~~~~i~~G~vl~~~ 153 (252)
|.||+.+++ ...++.+.|..+|+|++.+
T Consensus 82 a~pGgliGvgT~Ldpsltk~D~l~GqV~g~p 112 (113)
T cd03688 82 AVPGGLIGVGTKLDPTLTKADRLVGQVVGEP 112 (113)
T ss_pred EeCCCeEEEccccCccccccceeeEEEeecC
Confidence 999999999 5557888899999999875
No 52
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.46 E-value=1e-12 Score=117.90 Aligned_cols=143 Identities=21% Similarity=0.343 Sum_probs=110.0
Q ss_pred hHHHHHHhccccccc-ccCceeEEEecccccCCcccCCCCC-CcCCCCccCchHH-hhccCCCCCCCCCCCeeEEEeeE-
Q psy10357 4 SVKYAVSFWQPKLWT-VRQEILLIISPSGQMGQNLKEPVGP-EICTWWKGGAFIP-FIDALPSLNRKMDGPFLMPVVEK- 79 (252)
Q Consensus 4 ~~~~~~~~~l~~~~~-~~~~~~~~ipiS~~~G~ni~~~~~~-~~~~w~~g~~L~~-~l~~i~~~~~~~~~p~~~~I~~~- 79 (252)
.+-.++-.++-.|+. -++=++|+++.||+.|+.-.++.++ ..| ..|++ .++++|.|..+.+.||+|.|...
T Consensus 139 ~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m-----~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ld 213 (603)
T COG1217 139 EVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDM-----APLFETILDHVPAPKGDLDEPLQMQVTQLD 213 (603)
T ss_pred HHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccch-----hHHHHHHHHhCCCCCCCCCCCeEEEEEeec
Confidence 344555555555654 1244679999999999865555322 111 13555 67889999999999999999887
Q ss_pred Ec-CCCeEEEEEEEEeeeecCCEEEEecCC---ceEEEEEEEeCC----ccceeecCCCeEEEEEeeeCCCCccceeEEe
Q psy10357 80 FK-DMGTVVMGKVESGEAKKGQSLVLMPNR---TPVIVDQLWSDD----EEVSSVGPGENIKVKLKGIEEDDVSPGFVLC 151 (252)
Q Consensus 80 ~~-g~G~vv~G~v~~G~l~~gd~v~i~p~~---~~~~V~sI~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 151 (252)
|+ ..|++..|||.+|++++||.|.+.-.+ +..+|..+..+. .++++|.|||+|++ .|+ .++..|+++|
T Consensus 214 yn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVai--aG~--~~~~igdTi~ 289 (603)
T COG1217 214 YNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAI--AGL--EDINIGDTIC 289 (603)
T ss_pred cccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEE--cCc--cccccccccc
Confidence 65 679999999999999999999998755 567888887764 58899999999986 555 4777899999
Q ss_pred CCCC
Q psy10357 152 DPNN 155 (252)
Q Consensus 152 ~~~~ 155 (252)
++++
T Consensus 290 d~~~ 293 (603)
T COG1217 290 DPDN 293 (603)
T ss_pred CCCC
Confidence 9975
No 53
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.40 E-value=2e-12 Score=92.83 Aligned_cols=74 Identities=22% Similarity=0.400 Sum_probs=66.0
Q ss_pred eecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEE-eCceEEeee
Q psy10357 159 TARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLE-AAGVICLDQ 237 (252)
Q Consensus 159 ~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~-l~~~i~~~~ 237 (252)
.++.|+|++.|+++++++.+||++.+|+++..++|+|..+.. +++++||.+.|++. +.+|+++++
T Consensus 2 ~~~~f~A~i~il~~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~--------------~~l~~g~~~~v~i~f~~~p~~~e~ 67 (87)
T cd03708 2 ACWEFEAEILVLHHPTTISPGYQATVHIGSIRQTARIVSIDK--------------DVLRTGDRALVRFRFLYHPEYLRE 67 (87)
T ss_pred ceeEEEEEEEEEcCCCcccCCCEeEEEEcCCEEEEEEEeccH--------------hhccCCCeEEEEEEECCCCcEEcc
Confidence 468899999999999999999999999999999999987632 67999999999999 589998886
Q ss_pred cCCCCCceeEEEEeC
Q psy10357 238 FKLFPQMGRFTLRDE 252 (252)
Q Consensus 238 ~~~~~~lgrfilrd~ 252 (252)
+|||+||+.
T Consensus 68 ------~grf~lr~g 76 (87)
T cd03708 68 ------GQRLIFREG 76 (87)
T ss_pred ------CCeEEEECC
Confidence 699999873
No 54
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.38 E-value=8e-12 Score=89.13 Aligned_cols=75 Identities=20% Similarity=0.301 Sum_probs=68.8
Q ss_pred EEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCC---ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCcccee
Q psy10357 74 MPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNR---TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGF 148 (252)
Q Consensus 74 ~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~---~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~ 148 (252)
..|.++|+ +.|+++.|+|++|.++.|+.+.++|.+ ...+|+||+.+++++++|.+|+.++|.|++.+ ++++||
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~--d~~~Gd 80 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN--DIKVGD 80 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc--cCCCCC
Confidence 56788885 568999999999999999999999999 67799999999999999999999999999766 999999
Q ss_pred EE
Q psy10357 149 VL 150 (252)
Q Consensus 149 vl 150 (252)
+|
T Consensus 81 vi 82 (84)
T cd03692 81 II 82 (84)
T ss_pred EE
Confidence 87
No 55
>KOG0462|consensus
Probab=99.37 E-value=1e-12 Score=119.87 Aligned_cols=128 Identities=16% Similarity=0.201 Sum_probs=101.2
Q ss_pred hcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc--CCCeEEE
Q psy10357 11 FWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK--DMGTVVM 88 (252)
Q Consensus 11 ~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~--g~G~vv~ 88 (252)
..++.++..+++ +.|.+||++|.|+.+. |...++++|+|+...+.||||.|.|.|. ..|.+..
T Consensus 199 ~q~~~lF~~~~~--~~i~vSAK~G~~v~~l-------------L~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~ 263 (650)
T KOG0462|consen 199 NQLFELFDIPPA--EVIYVSAKTGLNVEEL-------------LEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIAL 263 (650)
T ss_pred HHHHHHhcCCcc--ceEEEEeccCccHHHH-------------HHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEE
Confidence 344455543333 7999999999999875 6678899999999999999999999975 6899999
Q ss_pred EEEEEeeeecCCEEEEecCCceEEEEEEEeCC---ccceeecCCCeEEEEEeee-CCCCccceeEEeCCC
Q psy10357 89 GKVESGEAKKGQSLVLMPNRTPVIVDQLWSDD---EEVSSVGPGENIKVKLKGI-EEDDVSPGFVLCDPN 154 (252)
Q Consensus 89 G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~---~~v~~a~aG~~v~l~l~~~-~~~~i~~G~vl~~~~ 154 (252)
++|..|.+++||+|..+.+++...|+.+.... .++....||+ |+..+.++ +..+...||+|++..
T Consensus 264 vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agq-vGyIi~~mr~~~ea~IGdTi~~~~ 332 (650)
T KOG0462|consen 264 VRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQ-VGYIICNMRNVKEAQIGDTIAHKS 332 (650)
T ss_pred EEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeecccc-cceeEecccccccccccceeeecc
Confidence 99999999999999999999988888887764 3555666666 22222333 356888899999876
No 56
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=99.37 E-value=7.1e-12 Score=90.56 Aligned_cols=74 Identities=19% Similarity=0.273 Sum_probs=65.6
Q ss_pred ecEEEEEEEEecc-----CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEE
Q psy10357 160 ARVFDAQIVILEH-----KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVIC 234 (252)
Q Consensus 160 ~~~f~a~i~~~~~-----~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~ 234 (252)
++.|+|++.+++. +.++++||++.+|+|+.++.|++..+. ++++|++||.+.|+|.+++|++
T Consensus 3 ~~~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~~~~i~~l~-------------~~~~i~~g~~~~v~l~l~~pv~ 69 (90)
T cd03707 3 HTKFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVTGSITLPE-------------GTEMVMPGDNVKMTVELIHPIA 69 (90)
T ss_pred eeEEEEEEEEEcccccCCCCcccCCceeEEEeccCeEEEEEEccC-------------cccccCCCCEEEEEEEECCcEE
Confidence 5889999999987 468999999999999999999987653 3377999999999999999999
Q ss_pred eeecCCCCCceeEEEEeC
Q psy10357 235 LDQFKLFPQMGRFTLRDE 252 (252)
Q Consensus 235 ~~~~~~~~~lgrfilrd~ 252 (252)
++. .|||+|||.
T Consensus 70 ~~~------~~rf~lR~~ 81 (90)
T cd03707 70 LEK------GLRFAIREG 81 (90)
T ss_pred Eec------CCEEEEecC
Confidence 887 489999984
No 57
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=99.33 E-value=2.1e-11 Score=88.68 Aligned_cols=74 Identities=19% Similarity=0.201 Sum_probs=65.5
Q ss_pred ecEEEEEEEEecc-----CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEE
Q psy10357 160 ARVFDAQIVILEH-----KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVIC 234 (252)
Q Consensus 160 ~~~f~a~i~~~~~-----~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~ 234 (252)
+++|+|++.||++ +.++.+||++.+|+++.++.|+|..+ + .+++|++||.+.|+|.+++|++
T Consensus 3 ~~~f~a~i~~L~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~~~----~---------~~~~l~~g~~~~v~i~l~~p~~ 69 (93)
T cd03706 3 HDKVEAQVYILSKAEGGRHKPFVSNFQPQMFSLTWDCAARIDLP----P---------GKEMVMPGEDTKVTLILRRPMV 69 (93)
T ss_pred ceEEEEEEEEEcccccCCCccccCCCeeEEEeccceEEEEEECC----C---------CCcEeCCCCEEEEEEEECCcEE
Confidence 6899999999997 47899999999999999999998765 2 1478999999999999999999
Q ss_pred eeecCCCCCceeEEEEeC
Q psy10357 235 LDQFKLFPQMGRFTLRDE 252 (252)
Q Consensus 235 ~~~~~~~~~lgrfilrd~ 252 (252)
+++ .|||+|||.
T Consensus 70 ~~~------g~rf~lR~~ 81 (93)
T cd03706 70 LEK------GQRFTLRDG 81 (93)
T ss_pred Eee------CCEEEEEEC
Confidence 998 389999984
No 58
>KOG0466|consensus
Probab=99.18 E-value=1.6e-11 Score=105.18 Aligned_cols=194 Identities=19% Similarity=0.238 Sum_probs=144.1
Q ss_pred HHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHh-hccCCCCCCCCCCCeeEEEeeEEc----
Q psy10357 7 YAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPF-IDALPSLNRKMDGPFLMPVVEKFK---- 81 (252)
Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~-l~~i~~~~~~~~~p~~~~I~~~~~---- 81 (252)
..+..|++.... +..|+||+||-.+.|++- +.++ ..+||.|.|+...|.||.|.+.|.
T Consensus 202 e~I~kFi~~t~a---e~aPiiPisAQlkyNId~--------------v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkP 264 (466)
T KOG0466|consen 202 EQIQKFIQGTVA---EGAPIIPISAQLKYNIDV--------------VCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKP 264 (466)
T ss_pred HHHHHHHhcccc---CCCceeeehhhhccChHH--------------HHHHHHhcCCCCccccCCCCcEEEEEeeccCCC
Confidence 345555555444 667999999999999965 4564 577999999999999999999984
Q ss_pred C------CCeEEEEEEEEeeeecCCEEEEecCCc------e-------EEEEEEEeCCccceeecCCCeEEEEEe---ee
Q psy10357 82 D------MGTVVMGKVESGEAKKGQSLVLMPNRT------P-------VIVDQLWSDDEEVSSVGPGENIKVKLK---GI 139 (252)
Q Consensus 82 g------~G~vv~G~v~~G~l~~gd~v~i~p~~~------~-------~~V~sI~~~~~~v~~a~aG~~v~l~l~---~~ 139 (252)
| +|-+..|.+..|.+++||.+.+.|.=. . .+|.|+...+.+.+.|.+|..+++..+ .+
T Consensus 265 G~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE~n~L~~AvPGGLIGVGT~~DPtl 344 (466)
T KOG0466|consen 265 GSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFAEQNDLQFAVPGGLIGVGTKMDPTL 344 (466)
T ss_pred CchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHhhhccceeecCCceeeeccccCcch
Confidence 3 688999999999999999999999631 1 245555556778999999999988654 12
Q ss_pred CCCCccceeEEeCCCCCcceecEEEEEEEEecc---------C-----CcCCCCCEEEEEEEeeEEEEEEEEEEEeeccc
Q psy10357 140 EEDDVSPGFVLCDPNNPARTARVFDAQIVILEH---------K-----SIICAGYSAVMHIHCVAEEVNVKALICLIDKK 205 (252)
Q Consensus 140 ~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~---------~-----~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~ 205 (252)
...|--.|.++......|....+++...++|.. + ..+.+|....+.+|+.+.-+++..+..
T Consensus 345 craDrlVGqVlG~~G~LP~if~elei~y~Llrrllgvrt~~~~k~~kv~kL~k~E~lmvNIGS~sTG~~v~~vk~----- 419 (466)
T KOG0466|consen 345 CRADRLVGQVLGAVGTLPDIFTELEISYFLLRRLLGVRTKGDKKQAKVSKLVKNEILMVNIGSTSTGGRVSAVKA----- 419 (466)
T ss_pred hhhhHHHHHHHhhccCCccceeEEEeehhhhhHHhccccccccccchhhhcccCcEEEEEecccccCceEEEEec-----
Confidence 223444577777777777788888888777642 1 136777778888888887777765421
Q ss_pred CCcccccCCceecCCCEEEEEEEeCceEEeeecC
Q psy10357 206 TGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFK 239 (252)
Q Consensus 206 tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~ 239 (252)
-.+++.|..|+|.+..+
T Consensus 420 -----------------d~~k~~Lt~P~CteigE 436 (466)
T KOG0466|consen 420 -----------------DMAKIQLTSPVCTEIGE 436 (466)
T ss_pred -----------------ceeeeEecCchhcccch
Confidence 25578888999987654
No 59
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=99.15 E-value=2.8e-10 Score=78.91 Aligned_cols=68 Identities=26% Similarity=0.382 Sum_probs=62.1
Q ss_pred CeEEEEEEEEeeeecCCEEEEec--CCce---EEEEEEEeCCccceeecCCCeEEEEEeeeCCCC-ccceeEEe
Q psy10357 84 GTVVMGKVESGEAKKGQSLVLMP--NRTP---VIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDD-VSPGFVLC 151 (252)
Q Consensus 84 G~vv~G~v~~G~l~~gd~v~i~p--~~~~---~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~-i~~G~vl~ 151 (252)
|++++|||.+|+|+.||+|.++| .+.. .+|++|+.++....++.+|+.+++.+...+.++ +++||+||
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 78999999999999999999977 3344 999999999999999999999999999888888 89999997
No 60
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.15 E-value=5.8e-10 Score=77.59 Aligned_cols=78 Identities=33% Similarity=0.421 Sum_probs=69.7
Q ss_pred eeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEec--CCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccce
Q psy10357 72 FLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMP--NRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPG 147 (252)
Q Consensus 72 ~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p--~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G 147 (252)
+++.|.++|+ +.|.++.|+|.+|++++||.+.+.| .....+|++|+.++.+++++.||+.+++.+. +..+++.|
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~--~~~~~~~g 78 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLK--DKDDIKIG 78 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEc--cccccCCC
Confidence 4788999885 5789999999999999999999999 7888999999999999999999999999887 33489999
Q ss_pred eEEe
Q psy10357 148 FVLC 151 (252)
Q Consensus 148 ~vl~ 151 (252)
++++
T Consensus 79 ~~l~ 82 (83)
T cd01342 79 DTLT 82 (83)
T ss_pred CEec
Confidence 9986
No 61
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.12 E-value=6.7e-10 Score=105.56 Aligned_cols=110 Identities=21% Similarity=0.291 Sum_probs=87.1
Q ss_pred eeEEEecccccCCcccCCCCCCcCCCCccCchHHhh---ccCCCCCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeee
Q psy10357 23 ILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFI---DALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAK 97 (252)
Q Consensus 23 ~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l---~~i~~~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~ 97 (252)
+++++|+||++|+|+.++ ++.| ..+.....+.+.|+++.|.+++. |.|++++|+|.+|+|+
T Consensus 224 ~~~~v~iSAktGeGI~eL--------------l~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~ 289 (587)
T TIGR00487 224 DTIFVPVSALTGDGIDEL--------------LDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLR 289 (587)
T ss_pred CceEEEEECCCCCChHHH--------------HHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEe
Confidence 468999999999999764 3322 22333334456899999999984 8999999999999999
Q ss_pred cCCEEEEecCCceEEEEEEEe-CCccceeecCCCeEEEEEeeeCCCCc-cceeEEeC
Q psy10357 98 KGQSLVLMPNRTPVIVDQLWS-DDEEVSSVGPGENIKVKLKGIEEDDV-SPGFVLCD 152 (252)
Q Consensus 98 ~gd~v~i~p~~~~~~V~sI~~-~~~~v~~a~aG~~v~l~l~~~~~~~i-~~G~vl~~ 152 (252)
+||.+.+.|. ..+|++|+. ++..+++|.||+.|.+. |++ ++ ..||.++-
T Consensus 290 ~Gd~iv~~~~--~~kVr~l~~~~g~~v~~a~~g~~v~i~--Gl~--~~p~aGd~~~~ 340 (587)
T TIGR00487 290 VGDIVVVGAA--YGRVRAMIDENGKSVKEAGPSKPVEIL--GLS--DVPAAGDEFIV 340 (587)
T ss_pred CCCEEEECCC--ccEEEEEECCCCCCCCEECCCCEEEEe--CCC--CCCCCCCEEEE
Confidence 9999999985 678999998 66799999999999763 443 33 57888873
No 62
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.11 E-value=2.4e-10 Score=108.47 Aligned_cols=89 Identities=19% Similarity=0.282 Sum_probs=68.4
Q ss_pred ceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CC-CCCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeee
Q psy10357 22 EILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LP-SLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAK 97 (252)
Q Consensus 22 ~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~-~~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~ 97 (252)
.+++++|+||++|+|+.++. .| |....+. ++ ..+.+.+.|++++|.++|. |.|++++|.|.+|+|+
T Consensus 189 ~~v~iVpVSA~tGeGideLl-----~~-----l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~ 258 (590)
T TIGR00491 189 KTVAIIPISAITGEGIPELL-----TM-----LAGLAQQYLEEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILR 258 (590)
T ss_pred CCceEEEeecCCCCChhHHH-----HH-----HHHHHHHHhhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEe
Confidence 46899999999999997752 22 1111111 21 1133467899999999985 8999999999999999
Q ss_pred cCCEEEEecCCc--eEEEEEEEeCC
Q psy10357 98 KGQSLVLMPNRT--PVIVDQLWSDD 120 (252)
Q Consensus 98 ~gd~v~i~p~~~--~~~V~sI~~~~ 120 (252)
+||.|.++|.+. .++|++|....
T Consensus 259 ~GD~iv~~~~~~~i~~kVr~l~~~~ 283 (590)
T TIGR00491 259 KGDTIAMAGSDDVIVTRVRALLKPR 283 (590)
T ss_pred CCCEEEEccCCCcccEEEEEecCCC
Confidence 999999999874 68999998653
No 63
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.07 E-value=2.5e-09 Score=78.31 Aligned_cols=85 Identities=20% Similarity=0.216 Sum_probs=72.0
Q ss_pred eeEEeCCCCCcceecEEEEEEEEecc-CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEE
Q psy10357 147 GFVLCDPNNPARTARVFDAQIVILEH-KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIM 225 (252)
Q Consensus 147 G~vl~~~~~~~~~~~~f~a~i~~~~~-~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v 225 (252)
|++++.++. ..+++.|++++.++.. +.++++++++.+|+|+.++.|+|.- ++. +.+.+|+.+.+
T Consensus 1 G~vl~~~~~-~~~~~~~~~~i~~l~~~~~~l~~~~~v~~~~Gt~~v~~ri~l----l~~----------~~~~pg~~~~a 65 (97)
T cd04094 1 GDVLADPGS-LLPTRRLDVRLTVLLSAPRPLKHRQRVHLHHGTSEVLARVVL----LDR----------DELAPGEEALA 65 (97)
T ss_pred CCEEecCCC-cCCceEEEEEEEEECCCCccCCCCCeEEEEeccceEEEEEEe----CCc----------cccCCCCEEEE
Confidence 789998876 4557999999999876 3579999999999999999999863 221 56899999999
Q ss_pred EEEeCceEEeeecCCCCCceeEEEEeC
Q psy10357 226 RLEAAGVICLDQFKLFPQMGRFTLRDE 252 (252)
Q Consensus 226 ~l~l~~~i~~~~~~~~~~lgrfilrd~ 252 (252)
+|.+++|+++...+ ||+||+.
T Consensus 66 ~l~l~~pl~~~~gd------rfilR~~ 86 (97)
T cd04094 66 QLRLEEPLVALRGD------RFILRSY 86 (97)
T ss_pred EEEECCcEeecCCC------eEEEeeC
Confidence 99999999998876 9999973
No 64
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.04 E-value=7.2e-10 Score=105.46 Aligned_cols=103 Identities=19% Similarity=0.296 Sum_probs=76.2
Q ss_pred ceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CCC-CCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeee
Q psy10357 22 EILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LPS-LNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAK 97 (252)
Q Consensus 22 ~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~-~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~ 97 (252)
.+++++|+||++|+|+.++. .. +....+. ++. -..+.+.|++++|.+++. |.|++++|+|.+|+|+
T Consensus 191 ~~v~ivpiSA~tGeGi~dLl--~~--------i~~~~~~~l~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~v~~GtL~ 260 (586)
T PRK04004 191 KTVAIVPVSAKTGEGIPDLL--MV--------LAGLAQRYLEERLKIDVEGPGKGTVLEVKEERGLGTTIDVILYDGTLR 260 (586)
T ss_pred CCceEeeccCCCCCChHHHH--HH--------HHHHHHHHHHHhhccCCCCCeEEEEEEEEEeCCCceEEEEEEEcCEEE
Confidence 57899999999999997642 10 1111111 221 134467899999999984 8999999999999999
Q ss_pred cCCEEEEecCCc--eEEEEEEEeCC------------ccceeecCCCeEEE
Q psy10357 98 KGQSLVLMPNRT--PVIVDQLWSDD------------EEVSSVGPGENIKV 134 (252)
Q Consensus 98 ~gd~v~i~p~~~--~~~V~sI~~~~------------~~v~~a~aG~~v~l 134 (252)
+||.|.+.|.+. .++|++|..+. ..+++|.|...|.+
T Consensus 261 ~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i 311 (586)
T PRK04004 261 KGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKI 311 (586)
T ss_pred CCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEE
Confidence 999999999874 57999999862 45666666655554
No 65
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=99.03 E-value=5.7e-09 Score=73.00 Aligned_cols=76 Identities=18% Similarity=0.368 Sum_probs=59.5
Q ss_pred CCeeEEEee--EEcCCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccce
Q psy10357 70 GPFLMPVVE--KFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPG 147 (252)
Q Consensus 70 ~p~~~~I~~--~~~g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G 147 (252)
.|-++.|.. +|+++. ++.|+|..|.+++|..| ......+|+|||.+++++++|.+||.|++.+.|.. ++..|
T Consensus 3 ~p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l---~G~~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~--~i~eG 76 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL---DGRKIGRIKSIEDNGKNVDEAKKGDEVAISIEGPT--QIKEG 76 (81)
T ss_dssp -SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE---CSSCEEEEEEEEETTEEESEEETT-EEEEEEET----TB-TT
T ss_pred CceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc---CCEEEEEEEEeEECCcCccccCCCCEEEEEEeCCc--cCCCC
Confidence 356677754 467777 88889999999999998 44568899999999999999999999999999744 99999
Q ss_pred eEEe
Q psy10357 148 FVLC 151 (252)
Q Consensus 148 ~vl~ 151 (252)
|+|.
T Consensus 77 DiLy 80 (81)
T PF14578_consen 77 DILY 80 (81)
T ss_dssp -EEE
T ss_pred CEEe
Confidence 9873
No 66
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.02 E-value=1.9e-09 Score=107.49 Aligned_cols=103 Identities=18% Similarity=0.304 Sum_probs=79.2
Q ss_pred ceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCC------CCCCCCCCeeEEEeeEEc--CCCeEEEEEEEE
Q psy10357 22 EILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPS------LNRKMDGPFLMPVVEKFK--DMGTVVMGKVES 93 (252)
Q Consensus 22 ~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~------~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~ 93 (252)
.+++++|+||++|+|+.++ ++.|..++. .....+.|++++|+++|. |.|++++|.|.+
T Consensus 646 ~~v~iVpVSA~tGeGId~L--------------l~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~vvt~iv~~ 711 (1049)
T PRK14845 646 RTVAIVPVSAKTGEGIPEL--------------LMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTTIDAIIYD 711 (1049)
T ss_pred CCceEEEEEcCCCCCHHHH--------------HHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCceeEEEEEEEc
Confidence 5789999999999999764 344433221 233457899999999985 899999999999
Q ss_pred eeeecCCEEEEecCCc--eEEEEEEEeC------------CccceeecCCCeEEEEEee
Q psy10357 94 GEAKKGQSLVLMPNRT--PVIVDQLWSD------------DEEVSSVGPGENIKVKLKG 138 (252)
Q Consensus 94 G~l~~gd~v~i~p~~~--~~~V~sI~~~------------~~~v~~a~aG~~v~l~l~~ 138 (252)
|+|++||.|.++|.+. ..+|+++... ...+++|.|..-|.+...|
T Consensus 712 G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~g 770 (1049)
T PRK14845 712 GTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPG 770 (1049)
T ss_pred CEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCC
Confidence 9999999999999865 7899999742 2356777777766664333
No 67
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.01 E-value=3.5e-09 Score=103.24 Aligned_cols=115 Identities=22% Similarity=0.243 Sum_probs=87.7
Q ss_pred ceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecC
Q psy10357 22 EILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKG 99 (252)
Q Consensus 22 ~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~g 99 (252)
.+++|+|+||++|+|+.++. +.+.| +.+ ......+.+.|++..|.+++. |.|++++|+|.+|+|+.|
T Consensus 425 ~~vp~vpvSAktG~GI~eLl--e~I~~-----~~e----~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~G 493 (787)
T PRK05306 425 GDTIFVPVSAKTGEGIDELL--EAILL-----QAE----VLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVG 493 (787)
T ss_pred CCceEEEEeCCCCCCchHHH--Hhhhh-----hhh----hhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecC
Confidence 45799999999999998752 11111 001 111234457789999999874 889999999999999999
Q ss_pred CEEEEecCCceEEEEEEEeC-CccceeecCCCeEEEEEeeeCCCCc-cceeEEeCC
Q psy10357 100 QSLVLMPNRTPVIVDQLWSD-DEEVSSVGPGENIKVKLKGIEEDDV-SPGFVLCDP 153 (252)
Q Consensus 100 d~v~i~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~l~l~~~~~~~i-~~G~vl~~~ 153 (252)
|.|.+.| ...+|++++.. +.++++|.||+.|.+. |++ ++ ..||+|+..
T Consensus 494 d~vv~g~--~~gkVr~m~~~~~~~v~~A~pGd~V~I~--gl~--~~p~~Gd~l~~~ 543 (787)
T PRK05306 494 DIVVAGT--TYGRVRAMVDDNGKRVKEAGPSTPVEIL--GLS--GVPQAGDEFVVV 543 (787)
T ss_pred CEEEECC--cEEEEEEEECCCCCCCCEEcCCCeEEEe--CCC--CCCCCCCEEEEc
Confidence 9999975 67899999984 6799999999999863 333 44 689999844
No 68
>PRK12740 elongation factor G; Reviewed
Probab=98.99 E-value=3.5e-09 Score=102.68 Aligned_cols=117 Identities=26% Similarity=0.380 Sum_probs=93.0
Q ss_pred CceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCC-----------------CCCCCeeEEEeeEEc--
Q psy10357 21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNR-----------------KMDGPFLMPVVEKFK-- 81 (252)
Q Consensus 21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~-----------------~~~~p~~~~I~~~~~-- 81 (252)
..-+|++..||++|.|+..+ |...++.+|.|.. +.+.|+.+.|..++.
T Consensus 234 ~~~~Pv~~gSA~~~~Gv~~L-------------Ld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~ 300 (668)
T PRK12740 234 GEIVPVFCGSALKNKGVQRL-------------LDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDP 300 (668)
T ss_pred CCEEEEEeccccCCccHHHH-------------HHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecC
Confidence 45679999999999999763 3334566777731 335789999999875
Q ss_pred CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357 82 DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN 154 (252)
Q Consensus 82 g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 154 (252)
+.|.++.+||.+|+|+.||.|.+.+.++..+|..|... ..++++|.|||.+++. +++ ++..|++|++.+
T Consensus 301 ~~G~i~~~RV~sG~L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~--gl~--~~~~Gdtl~~~~ 373 (668)
T PRK12740 301 FVGKLSLVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVA--KLK--DAATGDTLCDKG 373 (668)
T ss_pred CCCcEEEEEEeeeEEcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEe--ccC--ccCCCCEEeCCC
Confidence 56999999999999999999999998877777777543 4789999999999874 443 688999998764
No 69
>PRK13351 elongation factor G; Reviewed
Probab=98.94 E-value=8.5e-09 Score=100.33 Aligned_cols=116 Identities=22% Similarity=0.288 Sum_probs=92.4
Q ss_pred CceeEEEecccccCCcccCCCCCCcCCCCccCchHH-hhccCCCCCC------------------CCCCCeeEEEeeEEc
Q psy10357 21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIP-FIDALPSLNR------------------KMDGPFLMPVVEKFK 81 (252)
Q Consensus 21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~-~l~~i~~~~~------------------~~~~p~~~~I~~~~~ 81 (252)
.+-+|++..||++|.|+.. |++ .+..+|.|.. +.+.|+.+.|..++.
T Consensus 250 ~~~~PV~~gSA~~~~Gv~~--------------LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~ 315 (687)
T PRK13351 250 GHLVPVLFGSALKNIGIEP--------------LLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKVQY 315 (687)
T ss_pred CCEEEEEecccCcCccHHH--------------HHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEeee
Confidence 4567899999999999965 455 4566777732 235789999998864
Q ss_pred --CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357 82 --DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN 154 (252)
Q Consensus 82 --g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 154 (252)
+.|.+..+||.+|+|+.||.|.+.+.+...+|..|... ..++++|.|||++++ .|++ ++..|++|++.+
T Consensus 316 d~~~G~i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i--~gl~--~~~~gdtl~~~~ 390 (687)
T PRK13351 316 DPYAGKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAV--AGLK--ELETGDTLHDSA 390 (687)
T ss_pred cCCCceEEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEE--ECcc--cCccCCEEeCCC
Confidence 57999999999999999999999998888888777554 468999999999865 5443 567899998765
No 70
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.78 E-value=6.3e-09 Score=87.31 Aligned_cols=58 Identities=28% Similarity=0.381 Sum_probs=47.5
Q ss_pred hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCC
Q psy10357 4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSL 64 (252)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~ 64 (252)
.+..++..+++.++. +..+++++|+||++|+|+.+++ .+++||+|+||+++|+.+.+|
T Consensus 161 ~i~~~l~~~l~~~~~-~~~~~~ii~iSA~tg~gi~~~~--~~~~w~~g~~l~~~l~~~~~~ 218 (219)
T cd01883 161 EIKKELSPFLKKVGY-NPKDVPFIPISGLTGDNLIEKS--ENMPWYKGPTLLEALDSLEPP 218 (219)
T ss_pred HHHHHHHHHHHHcCC-CcCCceEEEeecCcCCCCCcCC--CCCCCccCCcHHHHHhCCCCC
Confidence 344555556666664 4567899999999999999888 899999999999999998654
No 71
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.76 E-value=7.4e-08 Score=90.71 Aligned_cols=117 Identities=16% Similarity=0.190 Sum_probs=91.9
Q ss_pred cCceeEEEecccccCCcccCCCCCCcCCCCccCchHH-hhccCCCCCC---------CCCCCeeEEEeeEEc-----CCC
Q psy10357 20 RQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIP-FIDALPSLNR---------KMDGPFLMPVVEKFK-----DMG 84 (252)
Q Consensus 20 ~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~-~l~~i~~~~~---------~~~~p~~~~I~~~~~-----g~G 84 (252)
...-+|++..||+++.|+.. |++ .++.+|.|.. ..+.+|...|..+.. ..|
T Consensus 245 ~~~~~PV~~GSA~~n~Gv~~--------------LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~g 310 (526)
T PRK00741 245 AGELTPVFFGSALNNFGVQE--------------FLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRD 310 (526)
T ss_pred cCCeEEEEEeecccCcCHHH--------------HHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCc
Confidence 46778999999999999976 455 4566777732 123567777776651 468
Q ss_pred eEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357 85 TVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN 154 (252)
Q Consensus 85 ~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 154 (252)
++...||.||+++.|+.|.....++..++..+... ..++++|.|||++++. +..++..||+||+.+
T Consensus 311 rlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~----~l~~~~~GDTL~~~~ 380 (526)
T PRK00741 311 RIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLH----NHGTIQIGDTFTQGE 380 (526)
T ss_pred eEEEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEEE----CCCCCccCCCccCCC
Confidence 99999999999999999999888888888887553 4689999999998773 456788999999765
No 72
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.73 E-value=1.1e-08 Score=85.16 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=46.3
Q ss_pred HHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCC
Q psy10357 5 VKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSL 64 (252)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~ 64 (252)
+..+++.+++.++. ..++++|+||++|+|+.+.+ .+++||+||||+++|+.+++|
T Consensus 153 i~~~~~~~~~~~~~---~~~~ii~iSA~~g~ni~~~~--~~~~w~~g~~~~~~~~~~~~~ 207 (208)
T cd04166 153 IVADYLAFAAKLGI---EDITFIPISALDGDNVVSRS--ENMPWYSGPTLLEHLETVPIA 207 (208)
T ss_pred HHHHHHHHHHHcCC---CCceEEEEeCCCCCCCccCC--CCCCCCCCCcHHHHHhcCCCC
Confidence 44566666777664 34689999999999999887 789999999999999999876
No 73
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.66 E-value=1.3e-07 Score=91.84 Aligned_cols=112 Identities=16% Similarity=0.149 Sum_probs=83.5
Q ss_pred ceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccC---CCCCCCCCCCeeEEEeeEE--cCCCeEEEEEEEEeee
Q psy10357 22 EILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDAL---PSLNRKMDGPFLMPVVEKF--KDMGTVVMGKVESGEA 96 (252)
Q Consensus 22 ~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i---~~~~~~~~~p~~~~I~~~~--~g~G~vv~G~v~~G~l 96 (252)
..++++|+||++|+|+.++ ++.|..+ .....+.+.|+...|.+.+ ++.|++++|+|.+|+|
T Consensus 383 ~~vpvv~VSAktG~GIdeL--------------le~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtL 448 (742)
T CHL00189 383 GDTPMIPISASQGTNIDKL--------------LETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTL 448 (742)
T ss_pred CCceEEEEECCCCCCHHHH--------------HHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEE
Confidence 3579999999999999764 3333221 1222334568888888876 3789999999999999
Q ss_pred ecCCEEEEecCCceEEEEEEEe-CCccceeecCCCeEEEEEeeeCCCCccceeEEeC
Q psy10357 97 KKGQSLVLMPNRTPVIVDQLWS-DDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCD 152 (252)
Q Consensus 97 ~~gd~v~i~p~~~~~~V~sI~~-~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 152 (252)
+.||.|.+.| ...+|+++.. ++.++++|.||+.|.+ .|++ .....||.+.-
T Consensus 449 r~GD~vv~g~--~~gkVr~m~~~~~~~v~~a~pgdiV~I--~gl~-~~~~~Gd~l~v 500 (742)
T CHL00189 449 HIGDIIVIGT--SYAKIRGMINSLGNKINLATPSSVVEI--WGLS-SVPATGEHFQV 500 (742)
T ss_pred ecCCEEEECC--cceEEEEEEcCCCcCccEEcCCCceEe--cCcc-cCCCCCCEEEE
Confidence 9999999988 5689999984 4679999999999876 3332 23445777654
No 74
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.66 E-value=2e-07 Score=91.23 Aligned_cols=82 Identities=29% Similarity=0.435 Sum_probs=69.8
Q ss_pred CCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCC
Q psy10357 69 DGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEED 142 (252)
Q Consensus 69 ~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~ 142 (252)
+.||.+.|..++. +.|.++.|||.+|+|+.||.|.+.+.+...+|..|... ..++++|.|||++++ .|+ .
T Consensus 288 ~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i--~gl--~ 363 (731)
T PRK07560 288 NGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAV--TGL--K 363 (731)
T ss_pred CCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEE--Ecc--c
Confidence 4589898988864 57999999999999999999999999888999999775 468999999999987 343 4
Q ss_pred CccceeEEeCCC
Q psy10357 143 DVSPGFVLCDPN 154 (252)
Q Consensus 143 ~i~~G~vl~~~~ 154 (252)
++.+|++|+++.
T Consensus 364 ~~~~GdtL~~~~ 375 (731)
T PRK07560 364 DARAGETVVSVE 375 (731)
T ss_pred ccccCCEEeCCC
Confidence 677899998765
No 75
>PRK00007 elongation factor G; Reviewed
Probab=98.66 E-value=3e-07 Score=89.54 Aligned_cols=116 Identities=22% Similarity=0.336 Sum_probs=89.9
Q ss_pred CceeEEEecccccCCcccCCCCCCcCCCCccCchHH-hhccCCCCCC--------------------CCCCCeeEEEeeE
Q psy10357 21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIP-FIDALPSLNR--------------------KMDGPFLMPVVEK 79 (252)
Q Consensus 21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~-~l~~i~~~~~--------------------~~~~p~~~~I~~~ 79 (252)
..-+|++..||+++.|+.. |++ .++.+|.|.. +.+.||.+.|..+
T Consensus 252 ~~~~Pv~~gSa~~~~Gv~~--------------LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~ 317 (693)
T PRK00007 252 NEIVPVLCGSAFKNKGVQP--------------LLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKI 317 (693)
T ss_pred CcEEEEEecccccCcCHHH--------------HHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEe
Confidence 4667888899999999865 455 4566777631 1256888889888
Q ss_pred Ec--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCC
Q psy10357 80 FK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDP 153 (252)
Q Consensus 80 ~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 153 (252)
+. ..|.+..+||.+|+|+.||+|+..-.++..+|..|... ..++++|.|||++++ .|+ .++..||+|++.
T Consensus 318 ~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i--~gl--~~~~~GdtL~~~ 393 (693)
T PRK00007 318 MTDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAA--VGL--KDTTTGDTLCDE 393 (693)
T ss_pred eecCCCCcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEE--eCC--ccCCcCCEeeCC
Confidence 64 46899999999999999999986656667788888664 468999999999987 443 357899999876
Q ss_pred C
Q psy10357 154 N 154 (252)
Q Consensus 154 ~ 154 (252)
+
T Consensus 394 ~ 394 (693)
T PRK00007 394 K 394 (693)
T ss_pred C
Confidence 5
No 76
>PRK12739 elongation factor G; Reviewed
Probab=98.64 E-value=3.3e-07 Score=89.26 Aligned_cols=116 Identities=22% Similarity=0.318 Sum_probs=89.9
Q ss_pred CceeEEEecccccCCcccCCCCCCcCCCCccCchHHh-hccCCCCCC-------------------CCCCCeeEEEeeEE
Q psy10357 21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPF-IDALPSLNR-------------------KMDGPFLMPVVEKF 80 (252)
Q Consensus 21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~-l~~i~~~~~-------------------~~~~p~~~~I~~~~ 80 (252)
.+-+|++..||++|.|+.. |++. +..+|.|.. +.+.||.+.|..++
T Consensus 250 ~~~~Pv~~gSa~~~~Gv~~--------------LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~ 315 (691)
T PRK12739 250 MEFFPVLCGSAFKNKGVQP--------------LLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKIM 315 (691)
T ss_pred CCEEEEEeccccCCccHHH--------------HHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEee
Confidence 4556888899999999865 4554 455777631 23568999998886
Q ss_pred c--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357 81 K--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN 154 (252)
Q Consensus 81 ~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 154 (252)
. ..|.+..+||.+|+|+.||.|.....++..+|..|... ..++++|.|||++++. |++ ++..||+|++.+
T Consensus 316 ~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl~--~~~~gdtl~~~~ 391 (691)
T PRK12739 316 TDPFVGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAV--GLK--DTTTGDTLCDEK 391 (691)
T ss_pred eCCCCCeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEe--CCC--cccCCCEEeCCC
Confidence 4 46999999999999999999987766777788887654 4689999999999874 443 578999998765
No 77
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.59 E-value=4.2e-07 Score=85.67 Aligned_cols=118 Identities=14% Similarity=0.134 Sum_probs=92.0
Q ss_pred cCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCC-C--------CCCCeeEEEeeEEc-----CCCe
Q psy10357 20 RQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNR-K--------MDGPFLMPVVEKFK-----DMGT 85 (252)
Q Consensus 20 ~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~-~--------~~~p~~~~I~~~~~-----g~G~ 85 (252)
..+-+|++..||+++.|+..+ |...++.+|.|.. . .+.+|...|..+.. ..|+
T Consensus 246 ~~~~~PV~~GSA~~n~Gv~~L-------------Ld~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~gr 312 (527)
T TIGR00503 246 GGEMTPVFFGTALGNFGVDHF-------------LDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDR 312 (527)
T ss_pred cCCeeEEEEeecccCccHHHH-------------HHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCce
Confidence 367789999999999999763 3335566777732 1 24567777766642 3699
Q ss_pred EEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357 86 VVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN 154 (252)
Q Consensus 86 vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 154 (252)
+...||.||+++.|++|.....++..++..+... ..++++|.|||++++. +..++..||+||+.+
T Consensus 313 iaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~----~~~~~~~GDtl~~~~ 381 (527)
T TIGR00503 313 VAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLH----NHGTIQIGDTFTQGE 381 (527)
T ss_pred EEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEE----CCCCcccCCEecCCC
Confidence 9999999999999999998888888888888654 4689999999998763 456788999999854
No 78
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.59 E-value=8.2e-07 Score=63.42 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=61.6
Q ss_pred eeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC---CccceeecCCCeEEEEEeee-CCCCcc
Q psy10357 72 FLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD---DEEVSSVGPGENIKVKLKGI-EEDDVS 145 (252)
Q Consensus 72 ~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~---~~~v~~a~aG~~v~l~l~~~-~~~~i~ 145 (252)
|++.|..+.. ..|.+..+||.+|+|+.||.|.....++..+|..|..+ ..++++|.|||++++. .++ +.+++.
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~-~g~~~l~~~~ 79 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQVGYII-AGIKTVKDAR 79 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEECCCccCCceECCCCEEEEE-ccccccCccc
Confidence 4677777753 46999999999999999999988776666777777654 3588999999998773 222 235788
Q ss_pred ceeEEeC
Q psy10357 146 PGFVLCD 152 (252)
Q Consensus 146 ~G~vl~~ 152 (252)
.||+||+
T Consensus 80 ~Gdtl~~ 86 (86)
T cd03699 80 VGDTITL 86 (86)
T ss_pred cccEeeC
Confidence 9999974
No 79
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.59 E-value=5.3e-07 Score=63.93 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=59.4
Q ss_pred EEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccce
Q psy10357 74 MPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPG 147 (252)
Q Consensus 74 ~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G 147 (252)
..|..++. ..|.+..+||.+|+|+.||.|.....++..+|..|... ..++++|.|||.+++ .++ +++..|
T Consensus 3 a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~gl--~~~~~G 78 (83)
T cd04092 3 ALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVI--TGL--KQTRTG 78 (83)
T ss_pred EEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEE--ECC--CCcccC
Confidence 44555543 46899999999999999999998877777788888654 368899999999986 544 568899
Q ss_pred eEEeC
Q psy10357 148 FVLCD 152 (252)
Q Consensus 148 ~vl~~ 152 (252)
|+||.
T Consensus 79 dtl~~ 83 (83)
T cd04092 79 DTLVT 83 (83)
T ss_pred CEEeC
Confidence 99974
No 80
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.57 E-value=6.7e-07 Score=87.13 Aligned_cols=116 Identities=24% Similarity=0.328 Sum_probs=89.5
Q ss_pred CceeEEEecccccCCcccCCCCCCcCCCCccCchHHh-hccCCCCCC-------------------CCCCCeeEEEeeEE
Q psy10357 21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPF-IDALPSLNR-------------------KMDGPFLMPVVEKF 80 (252)
Q Consensus 21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~-l~~i~~~~~-------------------~~~~p~~~~I~~~~ 80 (252)
.+-+|++..||++|.|+.. |++. +..+|.|.. +.+.||.+.|..++
T Consensus 251 ~~~~PV~~gSa~~~~Gv~~--------------LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~ 316 (689)
T TIGR00484 251 CEFFPVLCGSAFKNKGVQL--------------LLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVA 316 (689)
T ss_pred CCEEEEEeccccCCccHHH--------------HHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEee
Confidence 4667899999999999865 4554 466777631 12568999998886
Q ss_pred c--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357 81 K--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN 154 (252)
Q Consensus 81 ~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 154 (252)
. ..|.+..+||.+|+|+.||.|...-.+...+|..|... ..++++|.|||++++ .|+ .++..|++|++.+
T Consensus 317 ~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i--~gl--~~~~~gdtl~~~~ 392 (689)
T TIGR00484 317 TDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAA--IGL--KDTTTGDTLCDPK 392 (689)
T ss_pred ecCCCCeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEE--cCC--CCCCCCCEEeCCC
Confidence 4 57899999999999999999987666666677777554 368999999999987 344 3567899998765
No 81
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=98.56 E-value=8.3e-07 Score=62.84 Aligned_cols=75 Identities=29% Similarity=0.395 Sum_probs=60.0
Q ss_pred EEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccce
Q psy10357 74 MPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPG 147 (252)
Q Consensus 74 ~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G 147 (252)
..|...+. ..|.+..+||.+|+|+.||.|.....++..+|.+|... ..++++|.|||.+++ .++ +++..|
T Consensus 3 a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~g~--~~~~~G 78 (83)
T cd04088 3 ALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAV--AGL--KDTATG 78 (83)
T ss_pred EEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEE--ECC--CCCccC
Confidence 44555543 36899999999999999999999888888888888664 358899999999987 444 468889
Q ss_pred eEEeC
Q psy10357 148 FVLCD 152 (252)
Q Consensus 148 ~vl~~ 152 (252)
|+|++
T Consensus 79 dtl~~ 83 (83)
T cd04088 79 DTLCD 83 (83)
T ss_pred CEeeC
Confidence 99874
No 82
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.54 E-value=7.5e-07 Score=63.53 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=61.7
Q ss_pred CCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCC
Q psy10357 69 DGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEED 142 (252)
Q Consensus 69 ~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~ 142 (252)
+.||.+.|..+.. ..|....+||.+|+|+.||.|.... ....++..|... ..++++|.|||++++ .+ .+
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai--~g--l~ 75 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAIL--TG--LK 75 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEE--EC--CC
Confidence 3689999988854 4599999999999999999997654 455677777654 358899999999976 33 35
Q ss_pred CccceeEEeC
Q psy10357 143 DVSPGFVLCD 152 (252)
Q Consensus 143 ~i~~G~vl~~ 152 (252)
++..||+|++
T Consensus 76 ~~~~Gdtl~~ 85 (85)
T cd03690 76 GLRVGDVLGD 85 (85)
T ss_pred CCcCccccCC
Confidence 6778998863
No 83
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=98.54 E-value=1.3e-06 Score=62.31 Aligned_cols=77 Identities=23% Similarity=0.441 Sum_probs=59.3
Q ss_pred eeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCC---ceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCC
Q psy10357 72 FLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNR---TPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEED 142 (252)
Q Consensus 72 ~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~---~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~ 142 (252)
|+|.|.++.. ..|.+..+||.+|+|+.||.|.+...+ +..+|.+|... ..++++|.|||.+++ .++ .
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i--~gl--~ 76 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAI--AGI--E 76 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEE--ECC--C
Confidence 5788888753 468999999999999999999877653 24677787443 258899999998854 444 4
Q ss_pred CccceeEEeC
Q psy10357 143 DVSPGFVLCD 152 (252)
Q Consensus 143 ~i~~G~vl~~ 152 (252)
++..||+|++
T Consensus 77 ~~~~Gdtl~~ 86 (86)
T cd03691 77 DITIGDTICD 86 (86)
T ss_pred CCcccceecC
Confidence 7788999863
No 84
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.47 E-value=1.3e-06 Score=85.50 Aligned_cols=82 Identities=21% Similarity=0.419 Sum_probs=70.5
Q ss_pred CCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCC
Q psy10357 69 DGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEED 142 (252)
Q Consensus 69 ~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~ 142 (252)
+.||.+.|..++. +.|+++.|||.+|+|+.||.|++.+.+...+|..|... ..++++|.|||+|++ .++ .
T Consensus 287 ~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i--~gl--~ 362 (720)
T TIGR00490 287 KGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAV--IGL--K 362 (720)
T ss_pred CCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEE--ECc--c
Confidence 4589999988863 67999999999999999999999999999999999775 458999999999987 333 4
Q ss_pred CccceeEEeCCC
Q psy10357 143 DVSPGFVLCDPN 154 (252)
Q Consensus 143 ~i~~G~vl~~~~ 154 (252)
++.+||+||+++
T Consensus 363 ~~~~GdtL~~~~ 374 (720)
T TIGR00490 363 DAVAGETICTTV 374 (720)
T ss_pred ccccCceeecCC
Confidence 678999999765
No 85
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=98.46 E-value=2.2e-06 Score=60.43 Aligned_cols=66 Identities=27% Similarity=0.394 Sum_probs=54.8
Q ss_pred CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeC
Q psy10357 82 DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCD 152 (252)
Q Consensus 82 g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 152 (252)
..|.+..+||.+|+|++||.|.....++..+|..|... ..++++|.|||+++ +.++ ++..||+|++
T Consensus 12 ~~G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~--i~g~---~~~~Gdtl~~ 81 (81)
T cd04091 12 RFGQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICA--IFGI---DCASGDTFTD 81 (81)
T ss_pred CCCCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEE--EECC---CcccCCEecC
Confidence 35999999999999999999999888888888888664 35889999999887 4544 3788999874
No 86
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.40 E-value=1.7e-07 Score=77.36 Aligned_cols=55 Identities=16% Similarity=0.055 Sum_probs=46.4
Q ss_pred hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCc-cCchHHhhccCCC
Q psy10357 3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWK-GGAFIPFIDALPS 63 (252)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~-g~~L~~~l~~i~~ 63 (252)
+.++.+++.+|+++++ +++++||||+||++|+|+.+ .++||+ |++|+++|+++.+
T Consensus 138 ~~~~~~i~~~l~~~g~-~~~~v~iipiSa~~g~n~~~-----~~~w~~~~~~l~~~l~~~~~ 193 (195)
T cd01884 138 ELVEMEVRELLSKYGF-DGDNTPIVRGSALKALEGDD-----PNKWVKKILELLDALDSYIP 193 (195)
T ss_pred HHHHHHHHHHHHHhcc-cccCCeEEEeeCccccCCCC-----CCcchhcHhHHHHHHHhCCC
Confidence 4567789999999887 67789999999999999753 489998 7999999997643
No 87
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=98.31 E-value=4.2e-06 Score=59.63 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=53.8
Q ss_pred CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeC
Q psy10357 83 MGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCD 152 (252)
Q Consensus 83 ~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 152 (252)
.|....+||.+|+|+.||.|.....++..+|..|... ..++++|.|||++++. + .+++..||+||+
T Consensus 15 ~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~--g--l~~~~~Gdtl~~ 84 (85)
T cd03689 15 RDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLV--N--PGNFQIGDTLTE 84 (85)
T ss_pred CcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEE--C--CCCccccCEeeC
Confidence 5899999999999999999988776666677777554 3588999999999873 3 357889999984
No 88
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=2e-05 Score=76.32 Aligned_cols=117 Identities=25% Similarity=0.356 Sum_probs=90.3
Q ss_pred CceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCC--------------------CCCCCCeeEEEeeEE
Q psy10357 21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLN--------------------RKMDGPFLMPVVEKF 80 (252)
Q Consensus 21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~--------------------~~~~~p~~~~I~~~~ 80 (252)
...+|.+.-|++++.++..+ |..+++.+|.|. .+.+.||.+.+..+.
T Consensus 250 ~~~~pvl~gsa~kn~gv~~l-------------Ldav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~ 316 (697)
T COG0480 250 GKIVPVLCGSAFKNKGVQPL-------------LDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIM 316 (697)
T ss_pred cceeeEEeeecccCCcHHHH-------------HHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeE
Confidence 34679999999999776542 333456677661 123678999998876
Q ss_pred c--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCC----ccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357 81 K--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDD----EEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN 154 (252)
Q Consensus 81 ~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 154 (252)
. ..|....+||-||+|+.||.++....++..+|..|...+ .+++++.|||++++ .|+ ++...|+++|+.+
T Consensus 317 ~d~~~g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~--~Gl--~~~~tGdTl~~~~ 392 (697)
T COG0480 317 TDPFVGKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVAL--VGL--KDATTGDTLCDEN 392 (697)
T ss_pred ecCCCCeEEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEE--Ecc--cccccCCeeecCC
Confidence 4 357877799999999999999988888889999997753 58899999999976 333 3568899999876
No 89
>KOG1145|consensus
Probab=97.97 E-value=1.9e-05 Score=73.01 Aligned_cols=98 Identities=26% Similarity=0.272 Sum_probs=76.6
Q ss_pred CceeEEEecccccCCcccCCCCCCcCCCCccCchHHhh---ccCCCCCCCCCCCeeEEEeeEE--cCCCeEEEEEEEEee
Q psy10357 21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFI---DALPSLNRKMDGPFLMPVVEKF--KDMGTVVMGKVESGE 95 (252)
Q Consensus 21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l---~~i~~~~~~~~~p~~~~I~~~~--~g~G~vv~G~v~~G~ 95 (252)
+.++++||+||++|+|+..+ .+++ ..+-.-+.+...|+.-.|.+.+ +|+|.+.|--|..|+
T Consensus 288 GGdVQvipiSAl~g~nl~~L--------------~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGT 353 (683)
T KOG1145|consen 288 GGDVQVIPISALTGENLDLL--------------EEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGT 353 (683)
T ss_pred CCceeEEEeecccCCChHHH--------------HHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEeccc
Confidence 36789999999999999764 3432 2221223345778888888876 599999999999999
Q ss_pred eecCCEEEEecCCceEEEEEEEeC-CccceeecCCCeEEE
Q psy10357 96 AKKGQSLVLMPNRTPVIVDQLWSD-DEEVSSVGPGENIKV 134 (252)
Q Consensus 96 l~~gd~v~i~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~l 134 (252)
++.|+-|..+ ..-.+|+++.-+ ++++++|.|++.|.+
T Consensus 354 LkKG~vlV~G--~~w~KVr~l~D~nGk~i~~A~Ps~pv~V 391 (683)
T KOG1145|consen 354 LKKGSVLVAG--KSWCKVRALFDHNGKPIDEATPSQPVEV 391 (683)
T ss_pred cccccEEEEe--chhhhhhhhhhcCCCCccccCCCCceEe
Confidence 9999988874 467899999876 578999999998865
No 90
>KOG0465|consensus
Probab=97.80 E-value=9.7e-05 Score=69.21 Aligned_cols=116 Identities=22% Similarity=0.318 Sum_probs=85.8
Q ss_pred CceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCC--------C------------CC-CCeeEEEeeE
Q psy10357 21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNR--------K------------MD-GPFLMPVVEK 79 (252)
Q Consensus 21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~--------~------------~~-~p~~~~I~~~ 79 (252)
..-+|++.-||++..|+..+ |..+++++|.|.. . .+ +||.......
T Consensus 280 r~fvPVl~GSAlKNkGVQPl-------------LDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKl 346 (721)
T KOG0465|consen 280 RSFVPVLCGSALKNKGVQPL-------------LDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKL 346 (721)
T ss_pred cceeeEEechhhcccCcchH-------------HHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEe
Confidence 45569999999999998643 5557888887721 0 11 1443332222
Q ss_pred EcC-CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCC----ccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357 80 FKD-MGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDD----EEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN 154 (252)
Q Consensus 80 ~~g-~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 154 (252)
-.| .|..-.-||-+|+|+.||.|+-...+++++|-.+...| ++++++.|||++++ .|+ |...||++++..
T Consensus 347 e~g~fGqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~al--fGi---dcasGDTftd~~ 421 (721)
T KOG0465|consen 347 EEGRFGQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICAL--FGI---DCASGDTFTDKQ 421 (721)
T ss_pred eecCccceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccceeee--ecc---ccccCceeccCc
Confidence 224 47777889999999999999999999999888775433 68999999999975 555 788899999873
No 91
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=97.75 E-value=0.00022 Score=51.55 Aligned_cols=66 Identities=24% Similarity=0.413 Sum_probs=49.8
Q ss_pred CCCeEEEEEEEEeeeecCCEEEEec---------CCceEEEEEEEeCC----ccceeecCCCeEEEEEeeeCCCCcccee
Q psy10357 82 DMGTVVMGKVESGEAKKGQSLVLMP---------NRTPVIVDQLWSDD----EEVSSVGPGENIKVKLKGIEEDDVSPGF 148 (252)
Q Consensus 82 g~G~vv~G~v~~G~l~~gd~v~i~p---------~~~~~~V~sI~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~ 148 (252)
..|....+||.+|+|+.||.|.+.. .....+|..|.... .++++|.|||.|++. ++ .++..|+
T Consensus 14 ~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~--g~--~~~~~g~ 89 (93)
T cd03700 14 KGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV--GL--DQLKSGT 89 (93)
T ss_pred CCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE--CC--ccCceEe
Confidence 3588999999999999999998765 23346777776543 588999999999774 33 3567787
Q ss_pred EEe
Q psy10357 149 VLC 151 (252)
Q Consensus 149 vl~ 151 (252)
+.+
T Consensus 90 ~~~ 92 (93)
T cd03700 90 TAT 92 (93)
T ss_pred Eec
Confidence 643
No 92
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=8.4e-05 Score=67.27 Aligned_cols=118 Identities=15% Similarity=0.197 Sum_probs=87.4
Q ss_pred cCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCC-CCC--------CC---CeeEEEeeEE--cCCCe
Q psy10357 20 RQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLN-RKM--------DG---PFLMPVVEKF--KDMGT 85 (252)
Q Consensus 20 ~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~-~~~--------~~---p~~~~I~~~~--~g~G~ 85 (252)
..+-.|++.-||+...|+... |...++.-|+|. +.. +. .|.|-|+--- +.+-+
T Consensus 247 ~G~~TPVFFGSAl~NFGV~~~-------------L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDR 313 (528)
T COG4108 247 AGELTPVFFGSALGNFGVDHF-------------LDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDR 313 (528)
T ss_pred cCCccceEehhhhhccCHHHH-------------HHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccc
Confidence 367789999999999999764 334455556552 211 11 2444444322 14678
Q ss_pred EEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357 86 VVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN 154 (252)
Q Consensus 86 vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 154 (252)
+..-||.||+...|.++.....++.+++..-+.+ ++.++.|.|||.|+|.-. --+..||+++..+
T Consensus 314 IAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nh----G~~~IGDT~t~Ge 382 (528)
T COG4108 314 IAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNH----GTIQIGDTFTEGE 382 (528)
T ss_pred eeEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCC----CceeecceeecCc
Confidence 8889999999999999999999999998887664 578999999999998644 4577899998764
No 93
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=97.50 E-value=0.0011 Score=47.92 Aligned_cols=51 Identities=25% Similarity=0.418 Sum_probs=40.2
Q ss_pred CeEEEEEEEEeeeecCCEEEEecCC---------ceEEEEEEEeCC----ccceeecCCCeEEE
Q psy10357 84 GTVVMGKVESGEAKKGQSLVLMPNR---------TPVIVDQLWSDD----EEVSSVGPGENIKV 134 (252)
Q Consensus 84 G~vv~G~v~~G~l~~gd~v~i~p~~---------~~~~V~sI~~~~----~~v~~a~aG~~v~l 134 (252)
|....|||.+|+|+.||.|.+.-.+ ...+|..|.... .++++|.|||++++
T Consensus 16 ~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v 79 (94)
T cd04090 16 SFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLI 79 (94)
T ss_pred EEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEE
Confidence 5579999999999999999875321 346777776643 58899999999976
No 94
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.46 E-value=0.00051 Score=65.79 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=68.2
Q ss_pred eeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCce---EEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccc
Q psy10357 72 FLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTP---VIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSP 146 (252)
Q Consensus 72 ~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~---~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~ 146 (252)
-++.|..+|+ ..|.++..+|..|.++.|..+.++..+.. .+|.||+.+.++++++..|+-|++.+.+ ..|++.
T Consensus 493 g~a~v~~vf~~~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~--~~~~~~ 570 (587)
T TIGR00487 493 GQAEVRQVFNVPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKN--YNDIKE 570 (587)
T ss_pred eeEEEEEEEecCCCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEec--cccCCC
Confidence 4566778886 34899999999999999999999987763 5799999999999999999999999994 579999
Q ss_pred eeEEeC
Q psy10357 147 GFVLCD 152 (252)
Q Consensus 147 G~vl~~ 152 (252)
||+|-.
T Consensus 571 gD~i~~ 576 (587)
T TIGR00487 571 GDIIEA 576 (587)
T ss_pred CCEEEE
Confidence 999854
No 95
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.45 E-value=0.00064 Score=66.46 Aligned_cols=82 Identities=15% Similarity=0.051 Sum_probs=71.0
Q ss_pred CCCeeEEEeeEEc-CCCeEEEEEEEEeeeecCCEEEEecCCce---EEEEEEEeCCccceeecCCCeEEEEEeeeCCCCc
Q psy10357 69 DGPFLMPVVEKFK-DMGTVVMGKVESGEAKKGQSLVLMPNRTP---VIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDV 144 (252)
Q Consensus 69 ~~p~~~~I~~~~~-g~G~vv~G~v~~G~l~~gd~v~i~p~~~~---~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i 144 (252)
...-++.|..+|+ ..|.++.++|.+|.++.|..+.++..+.. .+|.||..+.+++.++..|.-|++.+. +..|+
T Consensus 647 ~~~g~a~v~~vF~~~k~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~--~~~d~ 724 (742)
T CHL00189 647 VPIGEAEVKTVFPLAKRFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIE--EFQLW 724 (742)
T ss_pred eeceeEEeeEEEecCCCEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEee--CCCCC
Confidence 3445777889997 56899999999999999999999988864 579999999999999999999999998 56799
Q ss_pred cceeEEeC
Q psy10357 145 SPGFVLCD 152 (252)
Q Consensus 145 ~~G~vl~~ 152 (252)
+.||+|-.
T Consensus 725 ~~gD~ie~ 732 (742)
T CHL00189 725 QSGDKIHA 732 (742)
T ss_pred CcCCEEEE
Confidence 99999854
No 96
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.00058 Score=63.33 Aligned_cols=98 Identities=22% Similarity=0.350 Sum_probs=71.5
Q ss_pred CceeEEEecccccCCcccCCCCCCcCCCCccCchHHhh---ccCCCCCCCCCCCeeEEEeeEE--cCCCeEEEEEEEEee
Q psy10357 21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFI---DALPSLNRKMDGPFLMPVVEKF--KDMGTVVMGKVESGE 95 (252)
Q Consensus 21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l---~~i~~~~~~~~~p~~~~I~~~~--~g~G~vv~G~v~~G~ 95 (252)
..++.|+|+||++|+|+.++ ++.+ ...-.-+...+.+.+-.|.++. +|.|.+++--|.+|+
T Consensus 142 gg~v~~VpvSA~tg~Gi~eL--------------L~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~Gt 207 (509)
T COG0532 142 GGDVIFVPVSAKTGEGIDEL--------------LELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGT 207 (509)
T ss_pred CCceEEEEeeccCCCCHHHH--------------HHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCe
Confidence 35689999999999999874 3432 2221223345678888888886 499999999999999
Q ss_pred eecCCEEEEecCCceEEEEEEEeC-CccceeecCCCeEEE
Q psy10357 96 AKKGQSLVLMPNRTPVIVDQLWSD-DEEVSSVGPGENIKV 134 (252)
Q Consensus 96 l~~gd~v~i~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~l 134 (252)
+++||.+.+.. ...+|+.+... ..+++.|.++-.+.+
T Consensus 208 L~~GD~iv~g~--~~g~I~t~v~~~~~~i~~a~ps~~v~i 245 (509)
T COG0532 208 LKKGDIIVAGG--EYGRVRTMVDDLGKPIKEAGPSKPVEI 245 (509)
T ss_pred EecCCEEEEcc--CCCceEEeehhcCCCccccCCCCCeEE
Confidence 99999999975 45566666553 467777777755543
No 97
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.35 E-value=0.0014 Score=64.63 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=69.0
Q ss_pred eeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCc---eEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccc
Q psy10357 72 FLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRT---PVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSP 146 (252)
Q Consensus 72 ~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~---~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~ 146 (252)
-.+.|..+|+ ..|.+..++|..|.++.|..+.++-.++ ..+|.||..+.+++.++..|.-|++.+.+ ..|++.
T Consensus 695 g~a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~--~~d~~~ 772 (787)
T PRK05306 695 GQAEVREVFKVSKVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLEN--YNDIKE 772 (787)
T ss_pred eeEEEEEEEecCCCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEeec--cccCCC
Confidence 3567788896 4589999999999999999999998876 46899999999999999999999999994 479999
Q ss_pred eeEEeC
Q psy10357 147 GFVLCD 152 (252)
Q Consensus 147 G~vl~~ 152 (252)
||+|-.
T Consensus 773 gD~ie~ 778 (787)
T PRK05306 773 GDIIEA 778 (787)
T ss_pred CCEEEE
Confidence 999853
No 98
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.94 E-value=0.0055 Score=56.97 Aligned_cols=76 Identities=21% Similarity=0.288 Sum_probs=64.7
Q ss_pred EEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCc-e--EEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeE
Q psy10357 75 PVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRT-P--VIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV 149 (252)
Q Consensus 75 ~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~-~--~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v 149 (252)
-+-.+|. +.|.++...|..|.++.|..+.+.-.+. - .+|.|++.+.++++++.+|.-|++.+++ ..+++.||+
T Consensus 417 ~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI~i~~--~~di~~gD~ 494 (509)
T COG0532 417 EVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGIAIEN--YRDIKEGDI 494 (509)
T ss_pred EEEEEEEcCCCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcEEEEEecC--cccCCCCCE
Confidence 3445554 6799999999999999999999985553 3 6999999999999999999999999995 679999998
Q ss_pred EeC
Q psy10357 150 LCD 152 (252)
Q Consensus 150 l~~ 152 (252)
|-.
T Consensus 495 le~ 497 (509)
T COG0532 495 LEV 497 (509)
T ss_pred EEE
Confidence 753
No 99
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=96.81 E-value=0.0075 Score=57.86 Aligned_cols=75 Identities=20% Similarity=0.274 Sum_probs=61.6
Q ss_pred eEEc-CCCeEEEEEEEEeeeecCCEEEEecCC-ceEEEEEEEeCCccceeecCCCeEEEEEeeeCC-CCccceeEEeCC
Q psy10357 78 EKFK-DMGTVVMGKVESGEAKKGQSLVLMPNR-TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEE-DDVSPGFVLCDP 153 (252)
Q Consensus 78 ~~~~-g~G~vv~G~v~~G~l~~gd~v~i~p~~-~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~-~~i~~G~vl~~~ 153 (252)
.+|+ ..+.++..+|..|.++.|..| +.+.+ ...+|.||+.+.+++++|.+|+-|++.+.+... .+++.||+|...
T Consensus 473 ~vf~~~~~~i~G~~V~~G~i~~~~~v-~r~~~~~iG~i~slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~l~~~ 550 (590)
T TIGR00491 473 LVFRQSKPAIVGVEVLTGVIRQGYPL-MKDDGETVGTVRSMQDKGENVKSASAGQEVAIAIKDVVYGRTIHEGDTLYVD 550 (590)
T ss_pred eeeeCCCCeEEEEEEecCEEecCCeE-EecCCEEEEEEchhcccCccccEECCCCEEEEEEeCccccCCCCCCCEEEEe
Confidence 6786 457888889999999999987 44444 356899999999999999999999999986322 689999999754
No 100
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=96.76 E-value=0.0075 Score=60.36 Aligned_cols=83 Identities=22% Similarity=0.355 Sum_probs=57.0
Q ss_pred CCCeeEEEeeEEc--CCCe-EEEEEEEEeeeecCCEEEEecCC----ce-----EEEEEEEeC----CccceeecCCCeE
Q psy10357 69 DGPFLMPVVEKFK--DMGT-VVMGKVESGEAKKGQSLVLMPNR----TP-----VIVDQLWSD----DEEVSSVGPGENI 132 (252)
Q Consensus 69 ~~p~~~~I~~~~~--g~G~-vv~G~v~~G~l~~gd~v~i~p~~----~~-----~~V~sI~~~----~~~v~~a~aG~~v 132 (252)
+.|+.+.|..++. ..|. ...+||.+|+|+.||.|++...+ +. .+|..|... ..++++|.|||++
T Consensus 373 ~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ 452 (843)
T PLN00116 373 NGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTV 452 (843)
T ss_pred CCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEE
Confidence 3578787877753 4576 89999999999999999865432 11 245444432 3689999999999
Q ss_pred EEEEeeeCCCCccceeEEeCCC
Q psy10357 133 KVKLKGIEEDDVSPGFVLCDPN 154 (252)
Q Consensus 133 ~l~l~~~~~~~i~~G~vl~~~~ 154 (252)
++. |++ .-+..|++||+..
T Consensus 453 ai~--gl~-~~~~~gdTL~~~~ 471 (843)
T PLN00116 453 AMV--GLD-QFITKNATLTNEK 471 (843)
T ss_pred EEE--eec-ccccCCceecCCc
Confidence 773 332 1234588887765
No 101
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=96.53 E-value=0.024 Score=41.11 Aligned_cols=72 Identities=26% Similarity=0.365 Sum_probs=55.0
Q ss_pred EEeeEE--cCCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCC-ccceeecCCCeEEEEEeeeCCCCc-cceeEE
Q psy10357 75 PVVEKF--KDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDD-EEVSSVGPGENIKVKLKGIEEDDV-SPGFVL 150 (252)
Q Consensus 75 ~I~~~~--~g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~-~~v~~a~aG~~v~l~l~~~~~~~i-~~G~vl 150 (252)
.|.+.. ++.|.+.+.-|.+|+|++||.+.... ...+|+++.... .++++|.||+.|.+ .|++ ++ ..||.+
T Consensus 4 ~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~--~~gkVr~l~d~~g~~v~~a~Ps~~V~I--~G~~--~~P~aGd~~ 77 (95)
T cd03702 4 VVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGT--TYGKVRAMFDENGKRVKEAGPSTPVEI--LGLK--GVPQAGDKF 77 (95)
T ss_pred EEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcc--cccEEEEEECCCCCCCCEECCCCcEEE--cCCC--CCCCCCCEE
Confidence 354554 48899999999999999999999865 456999998875 79999999999976 2332 33 456665
Q ss_pred eC
Q psy10357 151 CD 152 (252)
Q Consensus 151 ~~ 152 (252)
..
T Consensus 78 ~~ 79 (95)
T cd03702 78 LV 79 (95)
T ss_pred EE
Confidence 43
No 102
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=96.35 E-value=0.052 Score=40.39 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=55.9
Q ss_pred EEEeeEE--cCCCeEEEEEEEEeeeecCCEEEEecCC--ceEEEEEEEeCCc-----------cceeecCCCeEEEEEee
Q psy10357 74 MPVVEKF--KDMGTVVMGKVESGEAKKGQSLVLMPNR--TPVIVDQLWSDDE-----------EVSSVGPGENIKVKLKG 138 (252)
Q Consensus 74 ~~I~~~~--~g~G~vv~G~v~~G~l~~gd~v~i~p~~--~~~~V~sI~~~~~-----------~v~~a~aG~~v~l~l~~ 138 (252)
-.|-++- +|.|+++.--+.+|+|++||.+.+.... ...+||++..... ++++|.|..-+.+...+
T Consensus 3 gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~g 82 (110)
T cd03703 3 GTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAPD 82 (110)
T ss_pred EEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeCC
Confidence 3455554 4899999999999999999999998765 3579999988654 78888866666555554
Q ss_pred eCCCCccceeEEe
Q psy10357 139 IEEDDVSPGFVLC 151 (252)
Q Consensus 139 ~~~~~i~~G~vl~ 151 (252)
++ ++..|+-+.
T Consensus 83 L~--~v~aG~~~~ 93 (110)
T cd03703 83 LE--KAIAGSPLL 93 (110)
T ss_pred Cc--cccCCCEEE
Confidence 43 445676553
No 103
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.27 E-value=0.023 Score=54.64 Aligned_cols=74 Identities=19% Similarity=0.270 Sum_probs=59.3
Q ss_pred eEEc-CCCeEEEEEEEEeeeecCCEEEEecCCc-eEEEEEEEeCCccceeecCCCeEEEEEeeeCC-CCccceeEEeC
Q psy10357 78 EKFK-DMGTVVMGKVESGEAKKGQSLVLMPNRT-PVIVDQLWSDDEEVSSVGPGENIKVKLKGIEE-DDVSPGFVLCD 152 (252)
Q Consensus 78 ~~~~-g~G~vv~G~v~~G~l~~gd~v~i~p~~~-~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~-~~i~~G~vl~~ 152 (252)
.+|+ ..+.++..+|..|.|+.|..|. .+.+. ..+|.||+.+.+++++|.+|+-|++.+.+... .++..||+|-.
T Consensus 475 ~vf~~~~~~IaGc~V~~G~i~~~~~v~-r~~g~~iG~i~Slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~i~~ 551 (586)
T PRK04004 475 YVFRQSDPAIVGVEVLGGTIKPGVPLI-KEDGKRVGTIKQIQDQGENVKEAKAGMEVAISIDGPTVGRQIKEGDILYV 551 (586)
T ss_pred eeEecCCCeEEEEEEEeCEEecCCEEE-EECCEEEEEEehhhccCCcccEeCCCCEEEEEEecccccCCCCCCCEEEE
Confidence 6786 4577888899999999998853 43443 46899999999999999999999999985321 68888998854
No 104
>KOG1144|consensus
Probab=96.10 E-value=0.0051 Score=59.26 Aligned_cols=100 Identities=17% Similarity=0.238 Sum_probs=69.3
Q ss_pred CceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCC---CC-CCCCCeeEEEeeEE--cCCCeEEEEEEEEe
Q psy10357 21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSL---NR-KMDGPFLMPVVEKF--KDMGTVVMGKVESG 94 (252)
Q Consensus 21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~---~~-~~~~p~~~~I~~~~--~g~G~vv~G~v~~G 94 (252)
.+-+.++|+||.+|+|+.++ +-+|-.+... .+ ..-.-++..|-++- .|.|+.+-.-+..|
T Consensus 659 ~~~vsiVPTSA~sGeGipdL--------------l~llv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG 724 (1064)
T KOG1144|consen 659 GETVSIVPTSAISGEGIPDL--------------LLLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNG 724 (1064)
T ss_pred cceEEeeecccccCCCcHHH--------------HHHHHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcc
Confidence 34578999999999999654 2322222100 00 11234678887774 59999999999999
Q ss_pred eeecCCEEEEecCC----------------ceEEEEEEEeCCcc-------------ceeecCCCeEEE
Q psy10357 95 EAKKGQSLVLMPNR----------------TPVIVDQLWSDDEE-------------VSSVGPGENIKV 134 (252)
Q Consensus 95 ~l~~gd~v~i~p~~----------------~~~~V~sI~~~~~~-------------v~~a~aG~~v~l 134 (252)
.++.||.+.++-.+ +..+|++=+.|+.. ++.|.||-++-+
T Consensus 725 ~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEkaiaG~~l~V 793 (1064)
T KOG1144|consen 725 ELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEKAIAGTRLLV 793 (1064)
T ss_pred eeccCCEEEEcCCCCchhHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchHHHhcCCeeEE
Confidence 99999999987655 45688888887653 446777776643
No 105
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=96.03 E-value=0.061 Score=38.99 Aligned_cols=71 Identities=24% Similarity=0.325 Sum_probs=52.7
Q ss_pred EEeeEE--cCCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC-CccceeecCCCeEEEEEeeeCCCCccceeEE
Q psy10357 75 PVVEKF--KDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD-DEEVSSVGPGENIKVKLKGIEEDDVSPGFVL 150 (252)
Q Consensus 75 ~I~~~~--~g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl 150 (252)
.|.+.- +|.|.+.+.-|.+|+|++||.+.... ...+|+++... ++.+.+|.|++.|.+ .+.+ .....|+.+
T Consensus 4 ~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~--~~GkVr~~~d~~g~~v~~a~Ps~~v~i--~g~~-~~p~aGd~~ 77 (95)
T cd03701 4 TVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGG--TYGKIRTMVDENGKALLEAGPSTPVEI--LGLK-DVPKAGDGV 77 (95)
T ss_pred EEEEEEecCCCCeeEEEEEEcCeEecCCEEEECC--ccceEEEEECCCCCCccccCCCCCEEE--eeec-CCccCCCEE
Confidence 344543 48899999999999999999999854 57789999875 468999999998843 3332 223455544
No 106
>PTZ00416 elongation factor 2; Provisional
Probab=95.96 E-value=0.069 Score=53.52 Aligned_cols=82 Identities=21% Similarity=0.351 Sum_probs=55.8
Q ss_pred CCeeEEEeeEEc--CCCe-EEEEEEEEeeeecCCEEEEecCC-----ce----EEEEEEEeC----CccceeecCCCeEE
Q psy10357 70 GPFLMPVVEKFK--DMGT-VVMGKVESGEAKKGQSLVLMPNR-----TP----VIVDQLWSD----DEEVSSVGPGENIK 133 (252)
Q Consensus 70 ~p~~~~I~~~~~--g~G~-vv~G~v~~G~l~~gd~v~i~p~~-----~~----~~V~sI~~~----~~~v~~a~aG~~v~ 133 (252)
.|+.+.|..+.. ..|. +..+||.||+|+.||.|++...+ .. .+|..|... ..++++|.|||+++
T Consensus 370 ~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~ 449 (836)
T PTZ00416 370 GPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVG 449 (836)
T ss_pred CCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEE
Confidence 467666666542 4577 78999999999999999865433 11 235555443 36899999999998
Q ss_pred EEEeeeCCCCccceeEEeCCC
Q psy10357 134 VKLKGIEEDDVSPGFVLCDPN 154 (252)
Q Consensus 134 l~l~~~~~~~i~~G~vl~~~~ 154 (252)
+. |++..-...| +|++..
T Consensus 450 i~--gl~~~~~~tg-TL~~~~ 467 (836)
T PTZ00416 450 LV--GVDQYLVKSG-TITTSE 467 (836)
T ss_pred EE--ecccceecce-eecCCC
Confidence 73 4432225678 887665
No 107
>PRK14845 translation initiation factor IF-2; Provisional
Probab=95.83 E-value=0.038 Score=56.24 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=60.9
Q ss_pred eEEc-CCCeEEEEEEEEeeeecCCEEEEecCC-ceEEEEEEEeCCccceeecCCCeEEEEEeeeC-CCCccceeEEeCC
Q psy10357 78 EKFK-DMGTVVMGKVESGEAKKGQSLVLMPNR-TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIE-EDDVSPGFVLCDP 153 (252)
Q Consensus 78 ~~~~-g~G~vv~G~v~~G~l~~gd~v~i~p~~-~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~-~~~i~~G~vl~~~ 153 (252)
.+|+ ..+.++..+|..|.++.|..|. .+.+ ...+|.||+.+++++++|.+|+-|++.+.+.. ..++..||+|...
T Consensus 931 ~vF~~~~~~IaG~~V~~G~i~~~~~l~-r~~~~~iG~i~Slk~~k~~V~ev~~G~ecgI~i~~~~~gr~~~~gD~l~~~ 1008 (1049)
T PRK14845 931 CIFRRSNPAIVGVEVLEGTLRVGVTLI-KEDGMKVGTVRSIKDRGENVKEAKAGKAVAIAIEGAILGRHVDEGETLYVD 1008 (1049)
T ss_pred eEEeCCCCeEEEEEEeeCEEecCcEEE-ecCCEEEEEEchHhccCccccEeCCCCEEEEEEecccccCCCCCCCEEEEe
Confidence 6786 4578888899999999998774 3333 34689999999999999999999999998633 2588899998654
No 108
>KOG1144|consensus
Probab=93.56 E-value=0.17 Score=49.17 Aligned_cols=61 Identities=23% Similarity=0.401 Sum_probs=49.2
Q ss_pred eEEcCCCeEEEE-EEEEeeeecCCEEEEecCC---ceEEEEEEEeCCccceeecCCCeEEEEEeee
Q psy10357 78 EKFKDMGTVVMG-KVESGEAKKGQSLVLMPNR---TPVIVDQLWSDDEEVSSVGPGENIKVKLKGI 139 (252)
Q Consensus 78 ~~~~g~G~vv~G-~v~~G~l~~gd~v~i~p~~---~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~ 139 (252)
.+|+.++.++.| .|..|.|++|..+-+ |.. .-.+|.||+++++++++|..|+-|++.+.+.
T Consensus 944 ~ifN~RdPiv~GV~V~~GilkiGTPiCv-~~r~~~~lG~v~Sie~Nh~~vd~akkGqeVaiKie~~ 1008 (1064)
T KOG1144|consen 944 CIFNKRDPIVLGVDVEEGILKIGTPICV-PKREFIDLGRVASIENNHKPVDYAKKGQEVAIKIEAS 1008 (1064)
T ss_pred hhccCCCCeEEEEEeecCeeecCCceEE-eccceeeeeeeeeecccCcccchhhcCCeEEEEEecC
Confidence 357666666555 899999999988765 444 2459999999999999999999999988743
No 109
>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology. It is required for formation of the ternary complex with GTP and initiator tRNA []. ; PDB: 1S0U_A 1KK1_A 1KK0_A 1KK2_A 1KJZ_A 1KK3_A 2D74_A 2DCU_A 3P3M_A 3V11_A ....
Probab=92.46 E-value=1.1 Score=31.98 Aligned_cols=44 Identities=14% Similarity=0.192 Sum_probs=32.3
Q ss_pred CcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecC
Q psy10357 174 SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFK 239 (252)
Q Consensus 174 ~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~ 239 (252)
.++..|....+.+|+..+.++|.++. +| .+++.|.+|+|.+..+
T Consensus 25 ~~i~~~E~LmlnIGsatt~G~V~~~k--------------------~d--~~~v~L~~Pvc~~~g~ 68 (88)
T PF09173_consen 25 EPIKKGEVLMLNIGSATTGGVVTSVK--------------------KD--MAEVELKKPVCAEKGE 68 (88)
T ss_dssp ----TTEEEEEEETTEEEEEEEEEEE--------------------TT--EEEEEEEEEEE-STTS
T ss_pred ccCCCCCEEEEEEccccccEEEEEEE--------------------CC--EEEEEecCCeEcCcCC
Confidence 36899999999999999999998752 22 4577889999988765
No 110
>KOG0469|consensus
Probab=92.33 E-value=0.17 Score=47.23 Aligned_cols=82 Identities=20% Similarity=0.293 Sum_probs=60.2
Q ss_pred CCCCCeeEEEeeEE--cCCCeE-EEEEEEEeeeecCCEEEEecCC------ceEEEEEEEe-------CCccceeecCCC
Q psy10357 67 KMDGPFLMPVVEKF--KDMGTV-VMGKVESGEAKKGQSLVLMPNR------TPVIVDQLWS-------DDEEVSSVGPGE 130 (252)
Q Consensus 67 ~~~~p~~~~I~~~~--~g~G~v-v~G~v~~G~l~~gd~v~i~p~~------~~~~V~sI~~-------~~~~v~~a~aG~ 130 (252)
+.+.|+.|.|+..- +++|+. ..|||.+|++..|+++.+.--+ ....+|+|+. +-++++...+|+
T Consensus 373 D~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGN 452 (842)
T KOG0469|consen 373 DPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGN 452 (842)
T ss_pred CCCCCeEEeeeeccccCCCceEEEEeeeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCc
Confidence 46789999998875 377775 5899999999999999997433 2234455543 568999999999
Q ss_pred eEEEEEeeeCCCCccceeEE
Q psy10357 131 NIKVKLKGIEEDDVSPGFVL 150 (252)
Q Consensus 131 ~v~l~l~~~~~~~i~~G~vl 150 (252)
+++| -|++.--++.|-+-
T Consensus 453 IiGl--vGvDqfLvKtGTiT 470 (842)
T KOG0469|consen 453 IIGL--VGVDQFLVKTGTIT 470 (842)
T ss_pred EEEE--eehhHhhhccCcee
Confidence 9986 46665555666543
No 111
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=89.43 E-value=0.24 Score=40.26 Aligned_cols=36 Identities=14% Similarity=-0.143 Sum_probs=23.8
Q ss_pred HHHHHhccccccc-ccCceeEEEecccccCCcccCCC
Q psy10357 6 KYAVSFWQPKLWT-VRQEILLIISPSGQMGQNLKEPV 41 (252)
Q Consensus 6 ~~~~~~~l~~~~~-~~~~~~~~ipiS~~~G~ni~~~~ 41 (252)
..++..+++.++. .+.-+++++++||++|+|+.+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~ 174 (194)
T cd01891 138 VDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLE 174 (194)
T ss_pred HHHHHHHHHHhCCccccCccCEEEeehhccccccccc
Confidence 4455555554443 11235799999999999997663
No 112
>KOG0468|consensus
Probab=76.91 E-value=9.5 Score=37.28 Aligned_cols=84 Identities=21% Similarity=0.370 Sum_probs=58.3
Q ss_pred CCCCeeEEEeeEEc-CC--CeEEEEEEEEeeeecCCEEEEecCC---------ceEEEEEEEe----CCccceeecCCCe
Q psy10357 68 MDGPFLMPVVEKFK-DM--GTVVMGKVESGEAKKGQSLVLMPNR---------TPVIVDQLWS----DDEEVSSVGPGEN 131 (252)
Q Consensus 68 ~~~p~~~~I~~~~~-g~--G~vv~G~v~~G~l~~gd~v~i~p~~---------~~~~V~sI~~----~~~~v~~a~aG~~ 131 (252)
.+.|+.+.+...|. +. .-.+.|+|.+|+++.|+.|.++-.+ ...+|..+.. ++-++..|.+|..
T Consensus 469 ~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~V~vlgeny~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~ 548 (971)
T KOG0468|consen 469 ASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVLGENYSLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLW 548 (971)
T ss_pred CCCceeEEeecceecCCceeeeeeeeeeecceeecceeeEeeccccCCCcccceeeeeeeeeeeeeeEEEEecccCCCcE
Confidence 57788888888885 43 3457999999999999999998654 2344555543 3468999999998
Q ss_pred EEEEEeeeCCCCccceeEEeCCC
Q psy10357 132 IKVKLKGIEEDDVSPGFVLCDPN 154 (252)
Q Consensus 132 v~l~l~~~~~~~i~~G~vl~~~~ 154 (252)
|-+ .|++.. +.+-..|++.+
T Consensus 549 VLI--~Gidq~-i~KtaTi~~~~ 568 (971)
T KOG0468|consen 549 VLI--EGVDQS-IVKTATIKSLE 568 (971)
T ss_pred EEE--eccchH-Hhhhhheeccc
Confidence 854 555533 33345555543
No 113
>KOG1145|consensus
Probab=74.71 E-value=4.5 Score=38.48 Aligned_cols=66 Identities=24% Similarity=0.251 Sum_probs=54.3
Q ss_pred EEEEEEEEeeeecCCEEEEecCCceEEEEEEEe---CCccceeecCCCeEEEEEeeeCC-CCccceeEEeCC
Q psy10357 86 VVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWS---DDEEVSSVGPGENIKVKLKGIEE-DDVSPGFVLCDP 153 (252)
Q Consensus 86 vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~---~~~~v~~a~aG~~v~l~l~~~~~-~~i~~G~vl~~~ 153 (252)
+..++|..|.++....+.+...++.+-.-++.+ ..+++.++..|.-|+|.+. +. .++..||.|-..
T Consensus 598 VAGC~V~~G~~~K~~~~rlvR~g~vV~~G~l~SlKh~KedV~~vkkg~ECGl~~~--d~~~~f~~GD~i~~y 667 (683)
T KOG1145|consen 598 VAGCRVNNGVIKKSCKIRLVRNGKVVFEGELDSLKHLKEDVTEVKKGHECGLTFD--DGNEDFKEGDKIQCY 667 (683)
T ss_pred ccceEeecceEeecceEEEEeCCcEEEEechhHHhhhhhhhhhhcCCCeeeeEec--cCCcCCCcCCEEEEe
Confidence 667799999999999999999988775555544 4579999999999999998 44 488899988543
No 114
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=73.67 E-value=38 Score=29.78 Aligned_cols=66 Identities=23% Similarity=0.304 Sum_probs=38.6
Q ss_pred CCeEEEEEEEEee-eecCCEEE-EecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEE
Q psy10357 83 MGTVVMGKVESGE-AKKGQSLV-LMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVL 150 (252)
Q Consensus 83 ~G~vv~G~v~~G~-l~~gd~v~-i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl 150 (252)
.|++..-.+..|. +..|+.+. +.|.+. ..| .+......+.....|+.|.+.+..........|.|.
T Consensus 212 ~G~V~~~~~~~G~~v~~g~~l~~i~~~~~-~~v-~~~v~e~~~~~i~~G~~v~v~~~~~~~~~~~~G~V~ 279 (334)
T TIGR00998 212 DGYVARRFVQVGQVVSPGQPLMAVVPAEQ-MYV-EANFKETQLKNVRIGQPVTIRSDLYGSDVVFEGKVT 279 (334)
T ss_pred CcEEEEEecCCCCEeCCCCeeEEEEcCCc-EEE-EEecCHHHHhhCCCCCEEEEEEecCCCCCEEEEEEE
Confidence 3555544455454 45566554 445433 343 344556678888999999998765442334566554
No 115
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=66.79 E-value=68 Score=27.71 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=61.3
Q ss_pred CCeEEEEEEEEe-eeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceec
Q psy10357 83 MGTVVMGKVESG-EAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTAR 161 (252)
Q Consensus 83 ~G~vv~G~v~~G-~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~ 161 (252)
.|.+..-.+..| .++.|+.+..........+ .+............|+.+.+.+...+. .-..|.+..-....-..+.
T Consensus 142 ~G~V~~~~~~~G~~v~~g~~l~~i~~~~~~~v-~~~v~~~~~~~l~~G~~v~v~~~~~~~-~~~~g~I~~I~~~~~~~~~ 219 (322)
T TIGR01730 142 DGTIGRRLVEVGAYVTAGQTLATIVDLDPLEA-DFSVPERDLPQLRRGQTLTVELDALPG-EEFKGKLRFIDPRVDSGTG 219 (322)
T ss_pred CcEEEEEEcCCCceeCCCCcEEEEEcCCcEEE-EEEeCHHHHHHhhCCCeEEEEEeCCCC-ceEeEEEEEEeccccCCCC
Confidence 355544444433 3566777666655554444 445556677788899999988864332 3345655322211112334
Q ss_pred EEEEEEEEeccCCcCCCCCEEEEEEEeeE
Q psy10357 162 VFDAQIVILEHKSIICAGYSAVMHIHCVA 190 (252)
Q Consensus 162 ~f~a~i~~~~~~~~i~~g~~~~l~~~~~~ 190 (252)
.+.+++.+-+.+..+.+|....+.+....
T Consensus 220 ~~~v~~~~~~~~~~l~~G~~v~v~i~~~~ 248 (322)
T TIGR01730 220 TVRVRATFPNPDGRLLPGMFGRVTISLKV 248 (322)
T ss_pred eEEEEEEEcCCCCcCCCCCEEEEEEecCc
Confidence 56666655443556889998887666544
No 116
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=62.12 E-value=95 Score=26.05 Aligned_cols=90 Identities=14% Similarity=0.126 Sum_probs=51.7
Q ss_pred eecCCEEE-EecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceecEEEEEEEEeccCC
Q psy10357 96 AKKGQSLV-LMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHKS 174 (252)
Q Consensus 96 l~~gd~v~-i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~ 174 (252)
+..|+.+. +.+.+ ...| .+......+.....|+.+.+.+.+ .....|.+..-....-..+..|.+++.+-+...
T Consensus 110 v~~g~~l~~i~~~~-~~~i-~~~v~~~~~~~i~~g~~v~i~~~~---~~~~~g~v~~I~~~~~~~~~~~~v~~~~~~~~~ 184 (265)
T TIGR00999 110 VAPQAELFRVADLG-AVWV-EAEVPAKDVSRIRKGSKATVLLEN---GRPLPARVDYVGPEVDGSSRTAKVRVLIKNENL 184 (265)
T ss_pred eCCCCceEEEEcCC-cEEE-EEEECHHHHhhCCCCCEEEEEECC---CCEEEEEEEEEccccCCCCceEEEEEEEeCCCC
Confidence 44555553 33332 3333 344455667788899999887763 233455554322221223456777766655444
Q ss_pred cCCCCCEEEEEEEeeE
Q psy10357 175 IICAGYSAVMHIHCVA 190 (252)
Q Consensus 175 ~i~~g~~~~l~~~~~~ 190 (252)
.+.+|....+.+....
T Consensus 185 ~l~~G~~v~v~i~~~~ 200 (265)
T TIGR00999 185 TLKPGLFVQVRVETKI 200 (265)
T ss_pred ccCCCCEEEEEEecCC
Confidence 5889998887776553
No 117
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=62.04 E-value=19 Score=29.53 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=41.2
Q ss_pred eeecCCEEEEecCCceEEEEEEEeC-CccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357 95 EAKKGQSLVLMPNRTPVIVDQLWSD-DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN 154 (252)
Q Consensus 95 ~l~~gd~v~i~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 154 (252)
.+++||.+.+ .+..+.|+||+.. ...+++|.+.|+-.+=..++ ....+.|.-+-.+.
T Consensus 74 ~l~vGDei~v--d~e~veITSIE~~~gkRV~~A~veeIeTVWgrsl-~~p~~vgvSi~~~~ 131 (201)
T COG1326 74 TLKVGDEIEV--DGEEVEITSIELGGGKRVKSAKVEEIETVWGRSL-VIPVEVGVSIHLKG 131 (201)
T ss_pred eEecCCEEEE--cCCEEEEEEEeeCCCccccccccceeeeEeeecc-cCccEEEEEEecCC
Confidence 4788999988 4567999999998 67899999999887755422 13344566555443
No 118
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=60.76 E-value=8.7 Score=30.08 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=15.8
Q ss_pred ceeEEEecccccCCcccCC
Q psy10357 22 EILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 22 ~~~~~ipiS~~~G~ni~~~ 40 (252)
..+.|+++||++|.|+.+.
T Consensus 134 ~~~~~~~~Sa~~g~gv~~~ 152 (169)
T cd04158 134 RSWYIQGCDARSGMGLYEG 152 (169)
T ss_pred CcEEEEeCcCCCCCCHHHH
Confidence 3468999999999999764
No 119
>TIGR03630 arch_S17P archaeal ribosomal protein S17P. This model describes exclusively the archaeal ribosomal protein S17P. It excludes homologous ribosomal proteins S11 from eukaryotes and S17 from bacteria.
Probab=59.37 E-value=36 Score=24.95 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=29.8
Q ss_pred CCeEEEEEEEEeeeecCCEEEEe-----cCC--ceEEEEEEEeCCccceeecCCCeEEE
Q psy10357 83 MGTVVMGKVESGEAKKGQSLVLM-----PNR--TPVIVDQLWSDDEEVSSVGPGENIKV 134 (252)
Q Consensus 83 ~G~vv~G~v~~G~l~~gd~v~i~-----p~~--~~~~V~sI~~~~~~v~~a~aG~~v~l 134 (252)
.|.++.|+|.|.++..-=.|.+- |-- ...+-+.+..|+++...+..||.|.+
T Consensus 26 rgk~l~G~VvS~Km~KTivV~V~r~~~hpkY~K~i~r~kky~aHDe~cn~~kvGD~V~I 84 (102)
T TIGR03630 26 RGQILEGVVVSDKMNKTVVVEREYLYYDRKYERYERRRSKIHAHNPPCIDVKEGDIVII 84 (102)
T ss_pred eeEEEEEEEEecCCCceEEEEEEEEEecCCccEEEEEeeeEEEECCCCCCCCCCCEEEE
Confidence 46777777777655443222221 111 12344556667766677888998876
No 120
>KOG0464|consensus
Probab=56.60 E-value=8.6 Score=35.43 Aligned_cols=115 Identities=13% Similarity=0.195 Sum_probs=68.8
Q ss_pred CceeEEEecccccCCcccCCCCCCcCCCCccCchHHhh-ccCCCCCCCCCCCeeEEEee-------EE--cCCCeEEEEE
Q psy10357 21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFI-DALPSLNRKMDGPFLMPVVE-------KF--KDMGTVVMGK 90 (252)
Q Consensus 21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l-~~i~~~~~~~~~p~~~~I~~-------~~--~g~G~vv~G~ 90 (252)
+..+|+..-||++..|+.. |++++ -++|.|..-...-++-.=+| +. +.+|....=+
T Consensus 290 q~a~~i~cgsaiknkgiqp--------------lldavtmylpspeernyeflqwykddlcalafkvlhdkqrg~l~fmr 355 (753)
T KOG0464|consen 290 QKAAPILCGSAIKNKGIQP--------------LLDAVTMYLPSPEERNYEFLQWYKDDLCALAFKVLHDKQRGPLSFMR 355 (753)
T ss_pred hhhcceehhhhhcccCccc--------------hhhhhhhccCChhhcchHHHhhhhhhHHHHhhhhhcccccCceeEEE
Confidence 5677999999999999854 44544 44776643222222222222 22 2468888889
Q ss_pred EEEeeeecCCEEEEecCCceEEEEEEEe----CCccceeecCCCeEEEEEeeeCCCCccceeEEeCC
Q psy10357 91 VESGEAKKGQSLVLMPNRTPVIVDQLWS----DDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDP 153 (252)
Q Consensus 91 v~~G~l~~gd~v~i~p~~~~~~V~sI~~----~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 153 (252)
|-+|+++.+-.+.-...+..-.+..+.. .+..++++.||++. +. .|+. .--.||++.+.
T Consensus 356 iysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnia-lt-~glk--~tatgdtivas 418 (753)
T KOG0464|consen 356 IYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIA-LT-AGLK--HTATGDTIVAS 418 (753)
T ss_pred EecccccCceeeeecccccccchHhhhccchhhhhhhhhcccccEE-EE-ecce--eeccCCeEEec
Confidence 9999999886666544444444444432 24578899999843 21 1221 33457777654
No 121
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=54.89 E-value=1.7e+02 Score=26.82 Aligned_cols=72 Identities=6% Similarity=-0.004 Sum_probs=43.7
Q ss_pred EeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceecEEEEEEEEeccCCcCCCCCEEEEEEEee
Q psy10357 117 WSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCV 189 (252)
Q Consensus 117 ~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~ 189 (252)
......+.....|+.+.+.+...... ...|.+..-....-+.++.+.+++.+-+....+++|....+.+...
T Consensus 251 ~Vpe~~~~~i~~G~~v~v~~~~~~~~-~~~g~v~~i~p~vd~~trt~~vrv~l~N~~~~L~pGm~v~v~i~~~ 322 (409)
T PRK09783 251 AIPESIAWLVKDASQFTLTVPARPDK-TFTIRKWTLLPSVDAATRTLQLRLEVDNADEALKPGMNAWLQLNTA 322 (409)
T ss_pred EeCHHHHHhccCCCEEEEEEecCCCC-EEEEEEEEEccccCCCCcEEEEEEEEeCCCCccCCCCEEEEEEecC
Confidence 33455667788899988877533222 2345433211111234678888887766555689998887766543
No 122
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=53.71 E-value=1.8e+02 Score=26.53 Aligned_cols=73 Identities=14% Similarity=0.178 Sum_probs=43.9
Q ss_pred EeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCC-C-------CCc--------ceecEEEEEEEEecc---CCcCC
Q psy10357 117 WSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDP-N-------NPA--------RTARVFDAQIVILEH---KSIIC 177 (252)
Q Consensus 117 ~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~-~-------~~~--------~~~~~f~a~i~~~~~---~~~i~ 177 (252)
......+.....|+.|.+.+..........|.|..=. . .|+ +.+.+|.++|.+-+. ..+++
T Consensus 257 ~v~E~~l~~v~~Gq~V~I~~da~p~~~~~~G~V~~I~~~~~~~~~~lp~~~~~g~~~~~~qr~~Vri~l~~~~~~~~~Lr 336 (390)
T PRK15136 257 NFKETQLANMRIGQPATITSDIYGDDVVYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRIELDAKQLAQHPLR 336 (390)
T ss_pred ecCHHHHhcCCCCCEEEEEEecCCCCceEEEEEEEECCcccccccCCCCccCCCCeEEEEEEEeEEEEECCCccccCCcc
Confidence 3345577788899999988764433334556554211 0 111 224578888887543 24689
Q ss_pred CCCEEEEEEEee
Q psy10357 178 AGYSAVMHIHCV 189 (252)
Q Consensus 178 ~g~~~~l~~~~~ 189 (252)
+|....+.+.+.
T Consensus 337 ~Gm~~~v~i~~~ 348 (390)
T PRK15136 337 IGLSTLVTVDTA 348 (390)
T ss_pred CCceEEEEEEeC
Confidence 998877766553
No 123
>PF13437 HlyD_3: HlyD family secretion protein
Probab=52.87 E-value=80 Score=22.36 Aligned_cols=82 Identities=17% Similarity=0.304 Sum_probs=40.6
Q ss_pred eecCCEEEEecCCceEEEEEEEeCCccceeec-CCCeEEEEEeeeCCCCccceeEEeCCCCCcceecEEEEEEEEecc--
Q psy10357 96 AKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVG-PGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILEH-- 172 (252)
Q Consensus 96 l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~-aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~-- 172 (252)
+..|+.+.-.-...... -.+........... .|+.+.+.+.+.. .....|.+-.=...+-.....|.+++.+-+.
T Consensus 21 v~~g~~l~~i~~~~~~~-v~~~v~~~~~~~i~~~g~~v~v~~~~~~-~~~~~g~V~~I~~~~~~~~~~~~v~~~i~~~~~ 98 (105)
T PF13437_consen 21 VSAGQPLAEIVDTDDLW-VEAYVPEKDIARIKDPGQKVTVRLDPGP-EKTIEGKVSSISPSPDPQGGTYRVEISIDNPKD 98 (105)
T ss_pred ECCCCEEEEEEccceEE-EEEEEChHhhcceEeCCCEEEEEECCCC-CcEEEEEEEEEeCcccCCCcEEEEEEEECCCCC
Confidence 34455543332223333 34455567777886 9999988877222 1234554432222212233456666655554
Q ss_pred CCcCCCC
Q psy10357 173 KSIICAG 179 (252)
Q Consensus 173 ~~~i~~g 179 (252)
...+++|
T Consensus 99 ~~~lrpG 105 (105)
T PF13437_consen 99 DSPLRPG 105 (105)
T ss_pred CCccCCC
Confidence 2444544
No 124
>COG0186 RpsQ Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]
Probab=50.30 E-value=56 Score=23.21 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=32.3
Q ss_pred CCeEEEEEEEEeeeecCCEEEE-----ecCC--ceEEEEEEEeCCccceeecCCCeEEEE
Q psy10357 83 MGTVVMGKVESGEAKKGQSLVL-----MPNR--TPVIVDQLWSDDEEVSSVGPGENIKVK 135 (252)
Q Consensus 83 ~G~vv~G~v~~G~l~~gd~v~i-----~p~~--~~~~V~sI~~~~~~v~~a~aG~~v~l~ 135 (252)
.|.++.|.|.|.....-=.|.+ .|.- ...+-+.+..|+ +..+|..||.|.+.
T Consensus 7 ~~k~l~G~VvS~Km~KTvvV~ve~~~~hp~Y~K~v~r~kK~~aHd-e~~~~k~GD~V~I~ 65 (87)
T COG0186 7 RGRVLEGVVVSDKMDKTVVVEVERKVYHPKYGKYVRRSKKYHAHD-ECNEAKVGDIVRIA 65 (87)
T ss_pred CceEEEEEEEEccCceeEEEEEEEEEecccceEEEEEEeeeEeec-ccccCCCCCEEEEE
Confidence 5778888888887654322222 1211 233555666677 77788999988763
No 125
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=48.02 E-value=13 Score=34.04 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=15.5
Q ss_pred eeEEEecccccCCcccCC
Q psy10357 23 ILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 23 ~~~~ipiS~~~G~ni~~~ 40 (252)
.++++++||++|.|+.++
T Consensus 318 ~~~vi~~SA~~g~~v~~l 335 (429)
T TIGR03594 318 FAPIVFISALTGQGVDKL 335 (429)
T ss_pred CCceEEEeCCCCCCHHHH
Confidence 368999999999999764
No 126
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=47.91 E-value=7.5 Score=30.39 Aligned_cols=17 Identities=12% Similarity=0.042 Sum_probs=15.2
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
.|++++||++|+|+.++
T Consensus 122 ~p~~~~Sa~~g~gi~~l 138 (158)
T PRK15467 122 EPIFELNSHDPQSVQQL 138 (158)
T ss_pred CCEEEEECCCccCHHHH
Confidence 59999999999999773
No 127
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=47.33 E-value=1.6e+02 Score=25.80 Aligned_cols=90 Identities=17% Similarity=0.331 Sum_probs=49.3
Q ss_pred eecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeC-C-CC--Ccc-------eecEEE
Q psy10357 96 AKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCD-P-NN--PAR-------TARVFD 164 (252)
Q Consensus 96 l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~-~-~~--~~~-------~~~~f~ 164 (252)
+..|+.|.-........ ..+......+..+..|+.|.+.+.+... ....|-+-.- + .. +.. ....|.
T Consensus 225 V~~G~~l~~I~~~~~~~-v~~~V~e~~~~~i~~Gq~v~v~~~~~~~-~~~~g~V~~Is~~~~~~~~~~~~~~~~~~~~~~ 302 (331)
T PRK03598 225 LNAGSTVFTLSLTRPVW-VRAYVDERNLGQAQPGRKVLLYTDGRPD-KPYHGQIGFVSPTAEFTPKTVETPDLRTDLVYR 302 (331)
T ss_pred cCCCCeEEEEecCCceE-EEEEECHHHHhhCCCCCEEEEEEcCCCC-cEEEEEEEEEcCccccCCccccCcccceeEEEE
Confidence 45566665443333333 2345566788899999999988764322 2334543211 1 11 100 112467
Q ss_pred EEEEEeccCCcCCCCCEEEEEEE
Q psy10357 165 AQIVILEHKSIICAGYSAVMHIH 187 (252)
Q Consensus 165 a~i~~~~~~~~i~~g~~~~l~~~ 187 (252)
+++.+-+....+++|....+.+.
T Consensus 303 v~i~~~~~~~~l~pGm~~~v~i~ 325 (331)
T PRK03598 303 LRIVVTDADDALRQGMPVTVRFA 325 (331)
T ss_pred EEEEecCcccccCCCCeEEEEEe
Confidence 77766544456889987766543
No 128
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=46.38 E-value=18 Score=28.74 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=15.5
Q ss_pred eeEEEecccccCCcccCC
Q psy10357 23 ILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 23 ~~~~ipiS~~~G~ni~~~ 40 (252)
.++++|+||++|+|+.++
T Consensus 144 ~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 144 PWHVQPACAIIGEGLQEG 161 (183)
T ss_pred ceEEEEeecccCCCHHHH
Confidence 468999999999999764
No 129
>KOG0467|consensus
Probab=45.36 E-value=48 Score=33.03 Aligned_cols=68 Identities=18% Similarity=0.272 Sum_probs=46.9
Q ss_pred CCCCeeEEEeeEEc------CCC-eEEEEEEEEeeeecCCEEEEecCC-------ceEEEEEEEeC----CccceeecCC
Q psy10357 68 MDGPFLMPVVEKFK------DMG-TVVMGKVESGEAKKGQSLVLMPNR-------TPVIVDQLWSD----DEEVSSVGPG 129 (252)
Q Consensus 68 ~~~p~~~~I~~~~~------g~G-~vv~G~v~~G~l~~gd~v~i~p~~-------~~~~V~sI~~~----~~~v~~a~aG 129 (252)
.+.|..+.|...+. -.- -.+.++|.+|+++.||.++..... ..++|.++..+ ..+.+++.+|
T Consensus 356 ~~~pviv~Vskm~~~~~k~lp~~~l~~~ari~sgTlr~g~~v~v~~pd~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~g 435 (887)
T KOG0467|consen 356 KESPVLVFVSKMLATPLKYLPQSRLLAFARIFSGTLRVGQVVYVLGPDPLSPEHITECTVESLYLFMGQELVPLDEVPSG 435 (887)
T ss_pred CCCcEEEEEEeeeccchhhCchhhheeeeeeccCceeeccEeeecCCCCCCcceeeeeeehhhHHhhcccceeeeccCCC
Confidence 45667777765542 122 467899999999999999887431 34555555443 2477899999
Q ss_pred CeEEEE
Q psy10357 130 ENIKVK 135 (252)
Q Consensus 130 ~~v~l~ 135 (252)
+.+++.
T Consensus 436 nv~~I~ 441 (887)
T KOG0467|consen 436 NVVAIG 441 (887)
T ss_pred cEEEec
Confidence 999874
No 130
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=44.61 E-value=5.9 Score=32.33 Aligned_cols=18 Identities=6% Similarity=-0.188 Sum_probs=16.0
Q ss_pred eeEEEecccccCCcccCC
Q psy10357 23 ILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 23 ~~~~ipiS~~~G~ni~~~ 40 (252)
+++|+++||++|.|+.++
T Consensus 148 ~~~~~e~Sak~g~~v~~l 165 (198)
T cd04142 148 KCGYLECSAKYNWHILLL 165 (198)
T ss_pred CCcEEEecCCCCCCHHHH
Confidence 578999999999999775
No 131
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=41.76 E-value=17 Score=29.85 Aligned_cols=37 Identities=11% Similarity=-0.103 Sum_probs=20.8
Q ss_pred HHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCc
Q psy10357 6 KYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWK 50 (252)
Q Consensus 6 ~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~ 50 (252)
..++..+++.+.. ..++.|+|++ .|+...+ ..++|+-
T Consensus 155 i~~~n~~~~~~~~--~~~~~~~p~~----~nv~~~s--~~~~w~~ 191 (213)
T cd04167 155 IDEVNNIIASFST--TLSFLFSPEN----GNVCFAS--SKFGFCF 191 (213)
T ss_pred HHHHHHHHHHhcC--CCceEeccCC----CeEEEEe--cCCCeEE
Confidence 3455556655554 2346677764 4665544 5567764
No 132
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=40.52 E-value=3.1e+02 Score=25.50 Aligned_cols=106 Identities=12% Similarity=0.209 Sum_probs=57.5
Q ss_pred CeEEEEEEEEe--eeecCCEEE-EecCC--ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCC-CccceeEEe-CCCC-
Q psy10357 84 GTVVMGKVESG--EAKKGQSLV-LMPNR--TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEED-DVSPGFVLC-DPNN- 155 (252)
Q Consensus 84 G~vv~G~v~~G--~l~~gd~v~-i~p~~--~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~-~i~~G~vl~-~~~~- 155 (252)
|+|..-.+..| .+..|+.|. +.|.. ...-.-.+......+..+..|+.|.+.+...... ..-.|-|.. +++.
T Consensus 325 G~V~~~~~~~G~~~V~~G~~l~~IvP~~~~~~~l~v~~~V~e~di~~v~~Gq~V~v~~~a~~~~~~~~~G~V~~Is~~~~ 404 (457)
T TIGR01000 325 GVLHLNPETKGIKYVPKGTLIAQIYPILEKERKLKVTAYLPSNDISGIKVGQKVRFKLTQNVPKPIILDGTITSISSAPT 404 (457)
T ss_pred eEEEecccCCCCcEeCCCCEEEEEecCCCCCCcEEEEEEeCHHHHhhcCCCCeEEEEEecCCCCceEEEEEEEEEcCCCc
Confidence 55443233333 578888866 45653 1222334556677888999999999887641111 123565532 2211
Q ss_pred CcceecEEEEEEEEe-cc--CCcCCCCCEEEEEEEee
Q psy10357 156 PARTARVFDAQIVIL-EH--KSIICAGYSAVMHIHCV 189 (252)
Q Consensus 156 ~~~~~~~f~a~i~~~-~~--~~~i~~g~~~~l~~~~~ 189 (252)
.......|.+++.+- +. ...+.+|....+.+.+.
T Consensus 405 ~~~~~~~y~v~v~l~~~~~~~~~L~pGM~a~v~I~~~ 441 (457)
T TIGR01000 405 ATKKGNFYKVIATIKITKNQAELIRYGLTGKISTITG 441 (457)
T ss_pred cCCCCCEEEEEEEecCCcccccccCCCCEEEEEEEEc
Confidence 111235677776642 11 12478888777665543
No 133
>PTZ00099 rab6; Provisional
Probab=40.26 E-value=12 Score=29.91 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.2
Q ss_pred eeEEEecccccCCcccCC
Q psy10357 23 ILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 23 ~~~~ipiS~~~G~ni~~~ 40 (252)
...|+++||++|+|+.++
T Consensus 116 ~~~~~e~SAk~g~nV~~l 133 (176)
T PTZ00099 116 NTMFHETSAKAGHNIKVL 133 (176)
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 347899999999999774
No 134
>COG1160 Predicted GTPases [General function prediction only]
Probab=37.84 E-value=21 Score=33.15 Aligned_cols=33 Identities=27% Similarity=0.109 Sum_probs=24.8
Q ss_pred hhHHHHHHhcccccccccCceeEEEecccccCCcccCC
Q psy10357 3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~ 40 (252)
+..+.++...+..+.+ .|++++||++|.++.++
T Consensus 310 ~~~k~~i~~~l~~l~~-----a~i~~iSA~~~~~i~~l 342 (444)
T COG1160 310 EEFKKKLRRKLPFLDF-----APIVFISALTGQGLDKL 342 (444)
T ss_pred HHHHHHHHHHhccccC-----CeEEEEEecCCCChHHH
Confidence 4556677776666665 48999999999998653
No 135
>PF03829 PTSIIA_gutA: PTS system glucitol/sorbitol-specific IIA component; InterPro: IPR004716 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. This family consists only of glucitol-specific transporters, and occur both in Gram-negative and Gram-positive bacteria. The system in Escherichia coli consists of a IIA protein, and a IIBC protein. This family is specific for the IIA component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2F9H_A.
Probab=37.27 E-value=56 Score=24.54 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=16.8
Q ss_pred EEEeeeecCCEEEEecCCceEEEEEEEe
Q psy10357 91 VESGEAKKGQSLVLMPNRTPVIVDQLWS 118 (252)
Q Consensus 91 v~~G~l~~gd~v~i~p~~~~~~V~sI~~ 118 (252)
-..+.+++||.+.+ .++..+|..+..
T Consensus 47 ~~~~~i~~Gd~l~i--~~~~y~ItaVG~ 72 (117)
T PF03829_consen 47 ELKGDIKPGDTLII--GGQEYTITAVGS 72 (117)
T ss_dssp GGG----TT-EEEE--TTEEEEEEEE-T
T ss_pred cccCCcCCCCEEEE--CCeEEEEEEEhH
Confidence 46788999999999 578999999865
No 136
>COG5341 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.53 E-value=53 Score=24.88 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=26.2
Q ss_pred EEEEeeee-cCCEEEEecCCceEEEEEEEeCCc
Q psy10357 90 KVESGEAK-KGQSLVLMPNRTPVIVDQLWSDDE 121 (252)
Q Consensus 90 ~v~~G~l~-~gd~v~i~p~~~~~~V~sI~~~~~ 121 (252)
-|.+|++. +||++..+|.+..+.|++=+.++.
T Consensus 93 ~Vk~G~i~k~GetIVclPh~lvIev~~~~~dd~ 125 (132)
T COG5341 93 CVKTGWISKPGETIVCLPHKLVIEVKSKQKDDT 125 (132)
T ss_pred EEEeceecCCCCEEEEcCCeEEEEEEcccCccc
Confidence 47888888 999999999998888887665543
No 137
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=35.58 E-value=20 Score=28.62 Aligned_cols=18 Identities=17% Similarity=-0.007 Sum_probs=15.8
Q ss_pred eeEEEecccccCCcccCC
Q psy10357 23 ILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 23 ~~~~ipiS~~~G~ni~~~ 40 (252)
+.+++++||++|.|+.++
T Consensus 140 ~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 140 KAPLIFCSTSHSINVQKI 157 (182)
T ss_pred CCEEEEEeCCCCCCHHHH
Confidence 478999999999999774
No 138
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=35.32 E-value=12 Score=29.96 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=15.1
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
++++++||++|.|+.++
T Consensus 138 ~~~~e~SAk~~~~v~~l 154 (190)
T cd04144 138 CEFIEASAKTNVNVERA 154 (190)
T ss_pred CEEEEecCCCCCCHHHH
Confidence 58999999999999764
No 139
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=35.18 E-value=20 Score=30.70 Aligned_cols=16 Identities=25% Similarity=0.113 Sum_probs=14.5
Q ss_pred EEEecccccCCcccCC
Q psy10357 25 LIISPSGQMGQNLKEP 40 (252)
Q Consensus 25 ~~ipiS~~~G~ni~~~ 40 (252)
+++|+||++|.|+.++
T Consensus 140 ~v~~iSA~~g~gi~~L 155 (270)
T TIGR00436 140 DIVPISALTGDNTSFL 155 (270)
T ss_pred ceEEEecCCCCCHHHH
Confidence 7999999999999764
No 140
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=33.50 E-value=24 Score=28.16 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=15.7
Q ss_pred eeEEEecccccCCcccCC
Q psy10357 23 ILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 23 ~~~~ipiS~~~G~ni~~~ 40 (252)
.++|+++||++|.|+.+.
T Consensus 148 ~~~~~e~SAk~~~~v~e~ 165 (189)
T cd04134 148 ALRYLECSAKLNRGVNEA 165 (189)
T ss_pred CCEEEEccCCcCCCHHHH
Confidence 378999999999999774
No 141
>PRK00093 GTP-binding protein Der; Reviewed
Probab=33.10 E-value=26 Score=32.13 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=15.7
Q ss_pred eeEEEecccccCCcccCC
Q psy10357 23 ILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 23 ~~~~ipiS~~~G~ni~~~ 40 (252)
.+|++++||++|.|+.++
T Consensus 318 ~~~i~~~SA~~~~gv~~l 335 (435)
T PRK00093 318 YAPIVFISALTGQGVDKL 335 (435)
T ss_pred CCCEEEEeCCCCCCHHHH
Confidence 469999999999999765
No 142
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=31.55 E-value=17 Score=30.32 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=15.3
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
++|+.+||++|.|+.++
T Consensus 165 ~~~~E~SA~tg~~V~el 181 (220)
T cd04126 165 KMCFETSAKTGYNVDEL 181 (220)
T ss_pred ceEEEeeCCCCCCHHHH
Confidence 68999999999999774
No 143
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=30.75 E-value=2.5e+02 Score=21.57 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=33.5
Q ss_pred EEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeC
Q psy10357 89 GKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCD 152 (252)
Q Consensus 89 G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 152 (252)
|++..=.+++||.|.- ++..-|..--....++..-.+|....+.++ +...+.-|++|..
T Consensus 79 Gtv~~~~V~vGd~V~~---Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~--~G~~Ve~G~~L~~ 137 (140)
T COG0511 79 GTVYKPFVEVGDTVKA---GQTLAIIEAMKMENEIEAPADGVVKEILVK--NGDPVEYGDPLAV 137 (140)
T ss_pred eEEEEEeeccCCEEcC---CCEEEEEEeeeccceecCCCCcEEEEEEec--CCCccCCCCEEEE
Confidence 4444455666666663 333333222223455666677877777777 5566777887753
No 144
>KOG0092|consensus
Probab=29.93 E-value=37 Score=27.95 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=16.8
Q ss_pred CceeEEEecccccCCcccCC
Q psy10357 21 QEILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 21 ~~~~~~ipiS~~~G~ni~~~ 40 (252)
.....|+-+||++|.|+.+.
T Consensus 139 ~~gll~~ETSAKTg~Nv~~i 158 (200)
T KOG0092|consen 139 SQGLLFFETSAKTGENVNEI 158 (200)
T ss_pred hcCCEEEEEecccccCHHHH
Confidence 45568999999999999774
No 145
>PRK10377 PTS system glucitol/sorbitol-specific transporter subunit IIA; Provisional
Probab=29.30 E-value=1e+02 Score=23.28 Aligned_cols=55 Identities=20% Similarity=0.396 Sum_probs=32.4
Q ss_pred EeeeecCCEEEEecCCceEEEEEEEeC-CccceeecCCCeEEEEEeeeCCCCccceeEEeCC
Q psy10357 93 SGEAKKGQSLVLMPNRTPVIVDQLWSD-DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDP 153 (252)
Q Consensus 93 ~G~l~~gd~v~i~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 153 (252)
.|.+++||++.+ .++..+|+.+..- .+++.+. |- +++...|....+ .+|.+-..+
T Consensus 49 ~~~i~~Gd~l~i--~~~~Y~ItaVG~~a~~NL~~L--GH-iTi~F~g~~~~~-lpG~I~v~~ 104 (120)
T PRK10377 49 KGALQPGLQFEL--GQHRYPVTAVGSVAEDNLREL--GH-VTLRFDGLNEAE-FPGTVHVAG 104 (120)
T ss_pred cCccCCCCEEEE--CCEEEEEEEEhHHHHHHHHhc--CC-EEEEECCCCCcc-cCCEEEEcC
Confidence 566899999999 5678899888542 1222222 11 555555433323 466665544
No 146
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=28.53 E-value=1.8e+02 Score=25.12 Aligned_cols=96 Identities=17% Similarity=0.275 Sum_probs=54.0
Q ss_pred eeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEE-eCCCCCcceecEEEEEEEEeccC
Q psy10357 95 EAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVL-CDPNNPARTARVFDAQIVILEHK 173 (252)
Q Consensus 95 ~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl-~~~~~~~~~~~~f~a~i~~~~~~ 173 (252)
.+..|+.+.-........|. +............|+.+.+.+...+...-..|-+. .++. ....+.+.+..-+..
T Consensus 180 ~v~~g~~l~~i~~~~~~~v~-~~v~e~~~~~i~~g~~~~v~~~~~~~~~~~~g~v~~i~~~----~~~~~~v~~~~~~~~ 254 (328)
T PF12700_consen 180 YVAAGQPLFTIADLSNLYVE-AYVPESDASKIKVGQKVEVTIDAPDNGKSFTGKVSSISPS----ASRTFKVRVSLDNPN 254 (328)
T ss_dssp EETSTTCSEEEEEESEEEEE-EEEECCGTTTHTTTGEEEEEETTSS-SSEEEEEEEEEESS----ETTEEEEEEEEE-SS
T ss_pred EECCCceeeeeccCCcceee-eccCHHHHHhccCCcEEEEEEEeecCCCceeeEEeecCCc----cceeeEEEEEecccc
Confidence 45556665444333333332 24456777888889997776663332334456543 2221 156677777776766
Q ss_pred CcCCCCCEEEEEEEeeEEEEEE
Q psy10357 174 SIICAGYSAVMHIHCVAEEVNV 195 (252)
Q Consensus 174 ~~i~~g~~~~l~~~~~~~~~~i 195 (252)
..+.+|..+.+++......+..
T Consensus 255 ~~l~~g~~v~v~i~~~~~~~~~ 276 (328)
T PF12700_consen 255 GNLRPGMFVEVSIILGSENGLV 276 (328)
T ss_dssp S-S-TT-EEEEEEESEESCEEE
T ss_pred chhhhcccccceeccccccEEE
Confidence 6789999998888776644433
No 147
>PRK08572 rps17p 30S ribosomal protein S17P; Reviewed
Probab=28.48 E-value=1.7e+02 Score=21.74 Aligned_cols=50 Identities=20% Similarity=0.332 Sum_probs=28.3
Q ss_pred CCeEEEEEEEEeeeecCCEEEEe-------cCC--ceEEEEEEEeCCccceeecCCCeEEE
Q psy10357 83 MGTVVMGKVESGEAKKGQSLVLM-------PNR--TPVIVDQLWSDDEEVSSVGPGENIKV 134 (252)
Q Consensus 83 ~G~vv~G~v~~G~l~~gd~v~i~-------p~~--~~~~V~sI~~~~~~v~~a~aG~~v~l 134 (252)
.|..+.|.|.+-.+.. ++.+. |-- ...+-+.+..|+++..++..||.|.+
T Consensus 28 rgk~l~G~VvS~Km~K--TvvV~v~r~~~hpkY~K~i~r~kky~aHDe~cn~~kvGD~V~I 86 (108)
T PRK08572 28 RGQVLEGTVVSDKMHK--TVVVEREYLHYVPKYERYEKRRSRIHAHNPPCIDAKVGDKVKI 86 (108)
T ss_pred eeEEEEEEEEecCCCc--eEEEEEEEEEecCCccEEEEEeeeEEEECCCCCCCCCCCEEEE
Confidence 3666777776665443 23222 211 12244556667776677888888866
No 148
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=27.46 E-value=1.7e+02 Score=26.49 Aligned_cols=99 Identities=14% Similarity=0.165 Sum_probs=54.0
Q ss_pred ceeecCCCeEEEEEeeeC-------CCCccceeEEeCCCCCcceecEEEEEEEEeccCCcCCCCCEEEEEEEeeE--EEE
Q psy10357 123 VSSVGPGENIKVKLKGIE-------EDDVSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVA--EEV 193 (252)
Q Consensus 123 v~~a~aG~~v~l~l~~~~-------~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~--~~~ 193 (252)
.-.-.-|++-++.+.+.. ..|++.+.++..+...........-++.|+... +...+..+.+.+...+ .+|
T Consensus 231 ~~~yTiGQR~Gl~I~~~~~~p~yVv~kd~~~n~~~V~~~~~l~~~~l~~~~~~~~~~~-~~~~~~~~~~k~R~~~~~~~~ 309 (356)
T COG0482 231 LMYYTIGQRKGLGIGGLKGEPWYVVGKDLKKNRLYVGQGEALLSVGLIAEDLNWLDDA-PPEEPLECTAKVRYRQGDEPC 309 (356)
T ss_pred EEEEecccccccCcCCCCCCCEEEEEEecccCeEEEecchhheeeeeeeecccccccc-cCCCCceEEEEEeccCCCCce
Confidence 334556777777777532 356777777777765344444444456676642 2345556666666666 666
Q ss_pred EEEEEEEeecccCC--cccccCCceecCCCEEEE
Q psy10357 194 NVKALICLIDKKTG--EKSKTRPRFVKQDQIAIM 225 (252)
Q Consensus 194 ~i~~i~~~~d~~tg--~~~~~~~~~l~~g~~~~v 225 (252)
.++.+. +.... -.....-+.+.+||.+..
T Consensus 310 ~~~~~~---~~~~~~~v~f~~~~~avtpGQ~~v~ 340 (356)
T COG0482 310 KVKVLS---DEDVELAVKFDEPQRAVTPGQAAVL 340 (356)
T ss_pred eEEEcc---CCcceEEEEecCccccccCCcEEEE
Confidence 655431 11101 112233456788886644
No 149
>PF14001 YdfZ: YdfZ protein
Probab=27.35 E-value=1e+02 Score=20.45 Aligned_cols=40 Identities=5% Similarity=0.219 Sum_probs=32.1
Q ss_pred eeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEE
Q psy10357 95 EAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKV 134 (252)
Q Consensus 95 ~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l 134 (252)
.|..|..|.+.-++..-.|+.|+..+...+++..+.-|.+
T Consensus 9 ~i~~G~rVMiagtG~~gvikAih~~gl~~eq~rR~kcVel 48 (64)
T PF14001_consen 9 AITTGSRVMIAGTGATGVIKAIHADGLTAEQIRRAKCVEL 48 (64)
T ss_pred cCCCCCEEEEcCCCcccEEeeeecCCCCHHHhhhccEEEE
Confidence 4677888888888888899999988887777777776644
No 150
>PRK02888 nitrous-oxide reductase; Validated
Probab=27.26 E-value=4.2e+02 Score=26.04 Aligned_cols=53 Identities=15% Similarity=0.329 Sum_probs=34.9
Q ss_pred EeeeecCCEEEEecCCceEEEEEEEeC-CccceeecCCCeEEEEEeeeCC-CCccceeEEeC
Q psy10357 93 SGEAKKGQSLVLMPNRTPVIVDQLWSD-DEEVSSVGPGENIKVKLKGIEE-DDVSPGFVLCD 152 (252)
Q Consensus 93 ~G~l~~gd~v~i~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~l~l~~~~~-~~i~~G~vl~~ 152 (252)
++.++.|.+|.+ .+.++..+ ..+.-.+..||.|.+.|.+++. .|+.-|..|-.
T Consensus 532 ~~v~R~G~kv~V-------ym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~ 586 (635)
T PRK02888 532 SKVIRDGNKVRV-------YMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLTHGFAIPN 586 (635)
T ss_pred cceEEeCCEEEE-------EEEEEecccCCceEEecCCCEEEEEEEeCCcccccccceeecc
Confidence 445555655443 45555433 3334568999999999998765 67878887744
No 151
>TIGR00849 gutA PTS system, glucitol/sorbitol-specific IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. This family consists only of glucitol-specific transporters, and occur both in Gram-negative and Gram-positive bacteria.The system in E.Coli consists of a IIA protein, and a IIBC protein. This family is specific for the IIA component.
Probab=27.11 E-value=1.1e+02 Score=23.16 Aligned_cols=55 Identities=24% Similarity=0.398 Sum_probs=32.0
Q ss_pred eeeecCCEEEEecCCceEEEEEEEeC-CccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357 94 GEAKKGQSLVLMPNRTPVIVDQLWSD-DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN 154 (252)
Q Consensus 94 G~l~~gd~v~i~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 154 (252)
|.+++||.+.+ .++..+|..+..- .+++.+. |- +++...+....+ .+|.+-..++
T Consensus 50 ~~i~~Gd~l~i--~~~~Y~ItaVG~~a~~NL~~L--GH-iTi~F~g~~~~~-lpG~I~v~~~ 105 (121)
T TIGR00849 50 GTLKPGQVFMI--GGIAYPVTAVGDVAEKNLRSL--GH-ITVRFDGSNVAE-FPGTVHVEGK 105 (121)
T ss_pred CCcCCCCEEEE--CCEEEEEEEEhHHHHHHHHhc--CC-EEEEECCCCCcc-cCCEEEEcCC
Confidence 45899999999 5678899888542 1222222 11 555555533333 4666655543
No 152
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=26.98 E-value=39 Score=30.27 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=15.2
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
.|++++|+++|.|+.++
T Consensus 235 ~pVi~vSA~~g~GIdeL 251 (332)
T PRK09435 235 PPVLTCSALEGEGIDEI 251 (332)
T ss_pred CCEEEEECCCCCCHHHH
Confidence 58999999999999774
No 153
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=26.88 E-value=37 Score=26.38 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=16.1
Q ss_pred CceeEEEecccccCCcccCC
Q psy10357 21 QEILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 21 ~~~~~~ipiS~~~G~ni~~~ 40 (252)
....+++++||++|+|+.++
T Consensus 131 ~~~~~~~e~Sa~~~~~v~~~ 150 (166)
T cd00877 131 KKNLQYYEISAKSNYNFEKP 150 (166)
T ss_pred HcCCEEEEEeCCCCCChHHH
Confidence 34467999999999999764
No 154
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=25.91 E-value=38 Score=28.75 Aligned_cols=18 Identities=22% Similarity=0.115 Sum_probs=15.6
Q ss_pred eeEEEecccccCCcccCC
Q psy10357 23 ILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 23 ~~~~ipiS~~~G~ni~~~ 40 (252)
.++++++||++|.|+.++
T Consensus 145 ~~~~~evSAktg~gI~el 162 (247)
T cd04143 145 NCAYFEVSAKKNSNLDEM 162 (247)
T ss_pred CCEEEEEeCCCCCCHHHH
Confidence 468999999999999874
No 155
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=25.86 E-value=4.3e+02 Score=23.12 Aligned_cols=41 Identities=5% Similarity=-0.135 Sum_probs=25.4
Q ss_pred EEEEEEEEecc-CCcCCCCCEEEEEEEe---eEEEEEEEEEEEee
Q psy10357 162 VFDAQIVILEH-KSIICAGYSAVMHIHC---VAEEVNVKALICLI 202 (252)
Q Consensus 162 ~f~a~i~~~~~-~~~i~~g~~~~l~~~~---~~~~~~i~~i~~~~ 202 (252)
.+.+.+.+-.. -..+++|..+.++..+ ...+++|..|....
T Consensus 239 ~~~v~~~V~e~~~~~i~~Gq~v~v~~~~~~~~~~~g~V~~Is~~~ 283 (331)
T PRK03598 239 PVWVRAYVDERNLGQAQPGRKVLLYTDGRPDKPYHGQIGFVSPTA 283 (331)
T ss_pred ceEEEEEECHHHHhhCCCCCEEEEEEcCCCCcEEEEEEEEEcCcc
Confidence 34555554433 2247889888887754 45678887775443
No 156
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=25.78 E-value=28 Score=28.05 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=15.3
Q ss_pred eeEEEecccccCCcccCC
Q psy10357 23 ILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 23 ~~~~ipiS~~~G~ni~~~ 40 (252)
..+++++||++|.|+.++
T Consensus 137 ~~~~~~~Sa~~g~gv~~l 154 (198)
T cd04147 137 NCGFVETSAKDNENVLEV 154 (198)
T ss_pred CCcEEEecCCCCCCHHHH
Confidence 358999999999999764
No 157
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=25.75 E-value=42 Score=26.76 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=15.1
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
++++++||++|+|+.++
T Consensus 138 ~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 138 VPFMETSAKTGLNVELA 154 (191)
T ss_pred CeEEEEeCCCCCCHHHH
Confidence 58999999999999764
No 158
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=25.59 E-value=4.9e+02 Score=23.31 Aligned_cols=103 Identities=19% Similarity=0.302 Sum_probs=57.0
Q ss_pred CeEEEEEE--EEeeeecCCEEE-EecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCC--ccceeEEeCCCCC--
Q psy10357 84 GTVVMGKV--ESGEAKKGQSLV-LMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDD--VSPGFVLCDPNNP-- 156 (252)
Q Consensus 84 G~vv~G~v--~~G~l~~gd~v~-i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~--i~~G~vl~~~~~~-- 156 (252)
|++..-.+ ....+..|+.+. +.|......| .+......+.....|+.|.+.+.+.+... ...|-|..=...+
T Consensus 280 G~V~~~~~~~~G~~v~~g~~l~~i~~~~~~~~v-~~~v~~~~~~~i~~G~~v~v~~~~~~~~~~~~~~g~V~~i~~~~~~ 358 (423)
T TIGR01843 280 GTVQSLKVHTVGGVVQPGETLMEIVPEDDPLEI-EAKLSPKDIGFVHVGQPAEIKFSAFPYRRYGILNGKVKSISPDTFT 358 (423)
T ss_pred cEEEEEEEEccCceecCCCeeEEEecCCCcEEE-EEEEChhhhhhhCCCCceEEEEecCCCcccCCccEEEEEECCCccc
Confidence 45543333 233467777755 4464433333 34555677888999999999887654332 2457655322211
Q ss_pred -cce-ecEEEEEEEEecc-------CCcCCCCCEEEEEEE
Q psy10357 157 -ART-ARVFDAQIVILEH-------KSIICAGYSAVMHIH 187 (252)
Q Consensus 157 -~~~-~~~f~a~i~~~~~-------~~~i~~g~~~~l~~~ 187 (252)
... ...|.+++.+-+. ...+++|....+.+.
T Consensus 359 ~~~~~~~~~~v~i~l~~~~~~~~~~~~~l~~Gm~~~v~i~ 398 (423)
T TIGR01843 359 DERGGGPYYRVRISIDQNTLGIGPKGLELSPGMPVTADIK 398 (423)
T ss_pred CccCCcceEEEEEEECHHHhccCCCCCccCCCCEEEEEEE
Confidence 111 2447787776421 235788876665443
No 159
>PRK15494 era GTPase Era; Provisional
Probab=25.41 E-value=36 Score=30.42 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=14.8
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
.+++|+||++|.|+.++
T Consensus 191 ~~i~~iSAktg~gv~eL 207 (339)
T PRK15494 191 SLLFPISALSGKNIDGL 207 (339)
T ss_pred cEEEEEeccCccCHHHH
Confidence 57999999999999763
No 160
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=25.39 E-value=43 Score=27.38 Aligned_cols=17 Identities=12% Similarity=0.044 Sum_probs=14.8
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
.+++++||++|+|+.++
T Consensus 141 ~~~~~iSAktg~gv~~l 157 (215)
T cd04109 141 MESCLVSAKTGDRVNLL 157 (215)
T ss_pred CEEEEEECCCCCCHHHH
Confidence 57899999999999764
No 161
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=25.03 E-value=35 Score=27.34 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=15.3
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
++|+.+||++|+|+.+.
T Consensus 152 ~~~~e~SAk~g~~v~e~ 168 (191)
T cd01875 152 VKYLECSALNQDGVKEV 168 (191)
T ss_pred cEEEEeCCCCCCCHHHH
Confidence 68999999999999764
No 162
>PRK15452 putative protease; Provisional
Probab=23.71 E-value=6.1e+02 Score=23.71 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=32.2
Q ss_pred eeeecCCEEEEe-cCC-ceEEEEEEE-eCCccceeec-CCCeEEEEEe
Q psy10357 94 GEAKKGQSLVLM-PNR-TPVIVDQLW-SDDEEVSSVG-PGENIKVKLK 137 (252)
Q Consensus 94 G~l~~gd~v~i~-p~~-~~~~V~sI~-~~~~~v~~a~-aG~~v~l~l~ 137 (252)
..++.||.|.+. |.+ ...+|.+++ ...++++.|. +|+.|.+.+.
T Consensus 381 ~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (443)
T PRK15452 381 NKFSVGDSLELMTPQGNINFTLERMENRKGEAMEVAPGSGHTVWLPVP 428 (443)
T ss_pred CCCCCCCEEEEeecCCceEEEeehhccCCCCEeeeecCCCcEEEEeCC
Confidence 347999999986 433 466788886 5567888884 8998877654
No 163
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=23.68 E-value=44 Score=26.55 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=15.1
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
.+++.+||++|.|+.++
T Consensus 148 ~~~~e~Sa~~~~~v~~~ 164 (187)
T cd04129 148 KKYMECSALTGEGVDDV 164 (187)
T ss_pred cEEEEccCCCCCCHHHH
Confidence 48999999999999874
No 164
>cd04493 BRCA2DBD_OB1 BRCA2DBD_OB1: A subfamily of OB folds corresponding to the first OB fold (OB1) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous recombination-mediated repair of double-strand DNA breaks. It stimulates the displacement of Replication protein A (RPA), the most abundant eukaryotic ssDNA binding protein. It also facilitates filament formation. Mutations that map throughout the BRCA2 protein are associated with breast cancer susceptibility. BRCA2 is a large nuclear protein and its most conserved region is the C-terminal BRCA2DBD. BRCA2DBD binds ssDNA in vitro, and is composed of five structural domains, three of which are OB folds (OB1, OB2, and OB3). BRCA2DBD OB2 and OB3 are arranged in tandem, and their mode of binding can be considered qualitatively similar to two OB folds of RPA1, DBD-A and DBD-B (the major DBDs of RPA). BRCA2DBD OB1 binds DNA weakly.
Probab=23.67 E-value=1e+02 Score=22.45 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=25.7
Q ss_pred EEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEe
Q psy10357 90 KVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLK 137 (252)
Q Consensus 90 ~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~ 137 (252)
-+.+|+|++|+++.+.-.. +..+.+++.-..+.+.+.|.+.
T Consensus 45 ~l~~gkl~vGqKL~i~GA~-------l~~~~~~~sple~~~~~~L~l~ 85 (100)
T cd04493 45 LVRKGKLRVGQKLRICGAE-------LLGSANPCSPLEAPDSVRLKIN 85 (100)
T ss_pred HHHcCCeecccEEEEECce-------eecCCCCcCcccCCCcEEEEEE
Confidence 5678899999999986542 2223344444445566766665
No 165
>PRK03003 GTP-binding protein Der; Reviewed
Probab=23.35 E-value=55 Score=30.60 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=14.9
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
.|++++||++|.|+.++
T Consensus 357 ~~~~~~SAk~g~gv~~l 373 (472)
T PRK03003 357 APRVNISAKTGRAVDKL 373 (472)
T ss_pred CCEEEEECCCCCCHHHH
Confidence 58999999999999764
No 166
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=23.21 E-value=49 Score=26.60 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.9
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
.+++++||++|+|+.+.
T Consensus 143 ~~~~e~Sak~~~~v~e~ 159 (201)
T cd04107 143 IGWFETSAKEGINIEEA 159 (201)
T ss_pred ceEEEEeCCCCCCHHHH
Confidence 47999999999999764
No 167
>smart00785 AARP2CN AARP2CN (NUC121) domain. This domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU PUBMED:15112237.
Probab=22.85 E-value=1.9e+02 Score=20.14 Aligned_cols=67 Identities=13% Similarity=0.048 Sum_probs=41.3
Q ss_pred hHHhhccCCC-CCCCCCCCeeEEEeeE-Ec-------CCC-eEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCc
Q psy10357 54 FIPFIDALPS-LNRKMDGPFLMPVVEK-FK-------DMG-TVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDE 121 (252)
Q Consensus 54 L~~~l~~i~~-~~~~~~~p~~~~I~~~-~~-------g~G-~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~ 121 (252)
|...|...+. +...-+.-..|.++++ +. ..+ ..++|.|....++.|+.|-| |+--.++|.+|+....
T Consensus 5 L~R~i~~~k~~~l~WR~~rpY~lad~~e~~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHI-pG~GDfqi~~I~~~~d 81 (83)
T smart00785 5 LLRFLSVMKPRPLSWRDQHPYMLADRVEDITDEEDPKVDRTLVVYGYVRGTGLNANQLVHI-PGLGDFQISKIEALPD 81 (83)
T ss_pred HHHHHHhccCCCCcccCCCCeEEEEEeEecCCCCCCccCcEEEEEEEEcCCCCCCCCEEEe-CCcCCeEeeEEeecCC
Confidence 4444544322 2333344445666665 21 123 46899999999999887765 6667788888876543
No 168
>PTZ00241 40S ribosomal protein S11; Provisional
Probab=22.63 E-value=2.3e+02 Score=22.45 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=26.4
Q ss_pred CCeEEEEEEEEeeeecCCEEEEecCC---------ceEEEEEEEeCCccceeecCCCeEEE
Q psy10357 83 MGTVVMGKVESGEAKKGQSLVLMPNR---------TPVIVDQLWSDDEEVSSVGPGENIKV 134 (252)
Q Consensus 83 ~G~vv~G~v~~G~l~~gd~v~i~p~~---------~~~~V~sI~~~~~~v~~a~aG~~v~l 134 (252)
+|.++.|.|.+-.+.. ++.+.-.. ...+=+.+..|+.+...+..||.|.+
T Consensus 67 Rgril~G~VvS~KM~K--TIVV~ve~~~~h~kY~K~~kr~kk~~aHd~~~~~~kvGD~V~I 125 (158)
T PTZ00241 67 RGRILRGVVISTKMKR--TIIIRRDYLHYVKKYNRYEKRHKNIPVHCSPCFDVKEGDIVVV 125 (158)
T ss_pred cceEEEEEEEEccCCc--cEEEEEEEEEecCccceEEEeeecEEEeCCccCCCCCCCEEEE
Confidence 4666777766654432 23322110 12344445556556666777887765
No 169
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=22.28 E-value=37 Score=27.42 Aligned_cols=18 Identities=17% Similarity=0.076 Sum_probs=15.5
Q ss_pred eeEEEecccccCCcccCC
Q psy10357 23 ILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 23 ~~~~ipiS~~~G~ni~~~ 40 (252)
+.+|+.+||++|.|+.++
T Consensus 141 ~~~~~e~SAk~g~~V~~~ 158 (189)
T cd04121 141 GMTFFEVSPLCNFNITES 158 (189)
T ss_pred CCEEEEecCCCCCCHHHH
Confidence 458999999999999764
No 170
>PTZ00369 Ras-like protein; Provisional
Probab=22.22 E-value=31 Score=27.46 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=15.4
Q ss_pred eeEEEecccccCCcccCC
Q psy10357 23 ILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 23 ~~~~ipiS~~~G~ni~~~ 40 (252)
.++++.+||++|.|+.++
T Consensus 141 ~~~~~e~Sak~~~gi~~~ 158 (189)
T PTZ00369 141 GIPFLETSAKQRVNVDEA 158 (189)
T ss_pred CCEEEEeeCCCCCCHHHH
Confidence 358999999999999764
No 171
>PF03473 MOSC: MOSC domain; InterPro: IPR005302 Molybdenum cofactor (MOCO) sulphurases [] catalyse the insertion of a terminal sulphur ligand into the molybdenum cofactor, thereby converting the oxo form of MOCO to a sulphurylated form. Suphurylated MOCO is required by several enzymes, including: aldehyde oxidase (1.2.3.1 from EC), which function in the last step of abscisic acid biosynthesis in plants []; and xanthine dehydrogenase (1.17.1.4 from EC), which synthesis uric acid from xanthine during nitrogen metabolism []. This entry represents the beta-barrel C-terminal domain of MOCO sulphurase (MOSC domain), which has a beta-barrel structure similar to that of the beta-barrel domain in pyruvate kinase and contains a highly conserved cysteine residue required for activity. MOSC domains are found in several diverse metal-sulphur cluster biosynthesis proteins from both eukaryotes and prokaryotes. MOSC domains occu as either stand-alone forms, such as the YiiM protein from Escherichia coli, or fused to other domains, such as a NifS-like catalytic domain in MOCO sulphurase. The MOSC domain is predicted to be a sulphur-carrier domain that receives sulphur abstracted from pyridoxal phosphate-dependent NifS-like enzymes, on its conserved cysteine, and delivers it for the formation of diverse sulphur-metal clusters []. The MOSC domain contains several patches of hydrophobic residues and an absolutely conserved cysteine residue situated closer to the C-terminal end of the domain. The absolutely conserved cysteine in the MOSC domain is reminiscent of the analogous conservation of a cysteine in the active site of the thioredoxin and rhodanese superfamilies. Members of both these superfamilies, especially of the latter one, have been implicated in the synthesis of Fe-S clusters, through mobilisation of sulphur with their active cysteine. ; GO: 0003824 catalytic activity, 0030151 molybdenum ion binding, 0030170 pyridoxal phosphate binding; PDB: 1ORU_B 1O67_C 1O65_C.
Probab=21.78 E-value=1.6e+02 Score=22.01 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=14.3
Q ss_pred EEEEEEEEeeeecCCEEEE
Q psy10357 86 VVMGKVESGEAKKGQSLVL 104 (252)
Q Consensus 86 vv~G~v~~G~l~~gd~v~i 104 (252)
++.--+..|.|++||.|.+
T Consensus 115 ~~~~V~~~G~I~vGD~V~V 133 (133)
T PF03473_consen 115 VYARVIKGGTIRVGDEVEV 133 (133)
T ss_dssp EEEEEEE-EEEETTSEEEE
T ss_pred EEEEeccCCEEccCCeEEC
Confidence 3445689999999999975
No 172
>PRK09866 hypothetical protein; Provisional
Probab=21.76 E-value=58 Score=32.13 Aligned_cols=16 Identities=19% Similarity=0.063 Sum_probs=14.1
Q ss_pred eEEEecccccCCcccC
Q psy10357 24 LLIISPSGQMGQNLKE 39 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~ 39 (252)
..++||||++|.|+..
T Consensus 328 ~eIfPVSAlkG~nid~ 343 (741)
T PRK09866 328 QQIFPVSSMWGYLANR 343 (741)
T ss_pred ceEEEEeCCCCCCHHH
Confidence 3699999999999865
No 173
>KOG1423|consensus
Probab=21.70 E-value=65 Score=28.77 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=14.6
Q ss_pred EEEecccccCCcccCCC
Q psy10357 25 LIISPSGQMGQNLKEPV 41 (252)
Q Consensus 25 ~~ipiS~~~G~ni~~~~ 41 (252)
.++++||++|+|+.+++
T Consensus 247 ~vF~vSaL~G~Gikdlk 263 (379)
T KOG1423|consen 247 RVFMVSALYGEGIKDLK 263 (379)
T ss_pred eEEEEecccccCHHHHH
Confidence 38999999999997764
No 174
>COG1159 Era GTPase [General function prediction only]
Probab=21.47 E-value=49 Score=29.08 Aligned_cols=16 Identities=25% Similarity=0.273 Sum_probs=14.4
Q ss_pred EEEecccccCCcccCC
Q psy10357 25 LIISPSGQMGQNLKEP 40 (252)
Q Consensus 25 ~~ipiS~~~G~ni~~~ 40 (252)
.++|+||++|.|+..+
T Consensus 148 ~ivpiSA~~g~n~~~L 163 (298)
T COG1159 148 EIVPISALKGDNVDTL 163 (298)
T ss_pred eEEEeeccccCCHHHH
Confidence 8999999999999764
No 175
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=21.36 E-value=4.8e+02 Score=21.66 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=30.9
Q ss_pred CCCCCEEEEEEEee-EEEEEEEEEEEeecccCCcc-----cccCCceecCCCEEEEEEEeC
Q psy10357 176 ICAGYSAVMHIHCV-AEEVNVKALICLIDKKTGEK-----SKTRPRFVKQDQIAIMRLEAA 230 (252)
Q Consensus 176 i~~g~~~~l~~~~~-~~~~~i~~i~~~~d~~tg~~-----~~~~~~~l~~g~~~~v~l~l~ 230 (252)
+..|....+++... ...++|..|...++..+... .......+.+|+.+.+++...
T Consensus 139 i~~g~~v~i~~~~~~~~~g~v~~I~~~~~~~~~~~~v~~~~~~~~~~l~~G~~v~v~i~~~ 199 (265)
T TIGR00999 139 IRKGSKATVLLENGRPLPARVDYVGPEVDGSSRTAKVRVLIKNENLTLKPGLFVQVRVETK 199 (265)
T ss_pred CCCCCEEEEEECCCCEEEEEEEEEccccCCCCceEEEEEEEeCCCCccCCCCEEEEEEecC
Confidence 56666666655432 35566666654444332210 011113588999999998875
No 176
>PRK07051 hypothetical protein; Validated
Probab=21.31 E-value=2.2e+02 Score=19.32 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=10.3
Q ss_pred cCCCeEEEEEeeeCCCCccceeEEe
Q psy10357 127 GPGENIKVKLKGIEEDDVSPGFVLC 151 (252)
Q Consensus 127 ~aG~~v~l~l~~~~~~~i~~G~vl~ 151 (252)
.+|....+..+ +...+..|++|+
T Consensus 54 ~~G~v~~i~~~--~G~~V~~G~~l~ 76 (80)
T PRK07051 54 AAGRVVEFLVE--DGEPVEAGQVLA 76 (80)
T ss_pred CCEEEEEEEcC--CcCEECCCCEEE
Confidence 34444444433 223455555554
No 177
>PF05354 Phage_attach: Phage Head-Tail Attachment; InterPro: IPR008018 This entry is represented by Bacteriophage lambda, FII. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The phage head-tail attachment protein is required for the joining of phage heads and tails at the last step of morphogenesis [].; GO: 0042963 phage assembly, 0019028 viral capsid; PDB: 2KX4_A 1K0H_A.
Probab=21.09 E-value=3.2e+02 Score=20.57 Aligned_cols=54 Identities=15% Similarity=0.187 Sum_probs=32.0
Q ss_pred EEEEecCCce-EEEEEEEeCCccceeecCCCeE-----EEEEeeeCCCCccceeEEeCCC
Q psy10357 101 SLVLMPNRTP-VIVDQLWSDDEEVSSVGPGENI-----KVKLKGIEEDDVSPGFVLCDPN 154 (252)
Q Consensus 101 ~v~i~p~~~~-~~V~sI~~~~~~v~~a~aG~~v-----~l~l~~~~~~~i~~G~vl~~~~ 154 (252)
...+.|.... ..|+.|.-..+.+..+.+|-++ .|.++..+...++|+|.|.-..
T Consensus 26 ~a~itsG~~~g~~I~GVFDdPe~~~~~~gG~rIe~s~Pslfv~t~dv~~L~r~DtL~I~g 85 (117)
T PF05354_consen 26 EAVITSGALSGRTIRGVFDDPENISYVAGGGRIEGSSPSLFVRTADVSGLKRRDTLTIGG 85 (117)
T ss_dssp EEEEE-TTT--EEEEEEEE-SSS--SSSSS-SSS-SS-EEEESCCCCCTS-TT-EEEETT
T ss_pred eeEEecCCCCCcEEEEEEeCCCceeEecCceEEecCCceEEEEehHhhhhhcCCeEEECC
Confidence 3445555554 7889998888878877777654 5666666677788888876544
No 178
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.70 E-value=1.3e+02 Score=30.60 Aligned_cols=35 Identities=34% Similarity=0.355 Sum_probs=28.2
Q ss_pred CeeEEEeeEEc-CCCeE-EEEEEEEeeeecCCEEEEe
Q psy10357 71 PFLMPVVEKFK-DMGTV-VMGKVESGEAKKGQSLVLM 105 (252)
Q Consensus 71 p~~~~I~~~~~-g~G~v-v~G~v~~G~l~~gd~v~i~ 105 (252)
..++.|.|+++ +.|.+ -.|.+.+|.+++||.|...
T Consensus 518 ~~~~~V~dvqK~~~~~~vH~~~~~~G~l~~gd~V~~~ 554 (879)
T COG0013 518 GGRFEVTDVQKVGNGVIVHKGKVESGELKVGDEVTAE 554 (879)
T ss_pred CcEEEEEEEEEcCCceEEEEEeeccCccCCCCEEEEE
Confidence 46788999988 54664 4889999999999998864
No 179
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=20.57 E-value=83 Score=20.46 Aligned_cols=53 Identities=11% Similarity=0.097 Sum_probs=28.7
Q ss_pred CcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEcCCCeEEEEE-EEEeeeecCCEEEEec
Q psy10357 44 EICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMGK-VESGEAKKGQSLVLMP 106 (252)
Q Consensus 44 ~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~g~G~vv~G~-v~~G~l~~gd~v~i~p 106 (252)
+..+|..+.|+.++|+.+..+. ..+.+.+...+ +.-. =.+=.|+.||+|.+.|
T Consensus 7 ~~~~~~~~~tv~~ll~~l~~~~----~~i~V~vNg~~------v~~~~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 7 EPREVEEGATLAELLEELGLDP----RGVAVALNGEI------VPRSEWASTPLQDGDRIEIVT 60 (65)
T ss_pred eEEEcCCCCCHHHHHHHcCCCC----CcEEEEECCEE------cCHHHcCceecCCCCEEEEEE
Confidence 3456666778888888875331 23333343332 1100 0001378889988876
No 180
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=20.02 E-value=52 Score=26.24 Aligned_cols=16 Identities=25% Similarity=0.206 Sum_probs=14.0
Q ss_pred EEEecccccCCcccCC
Q psy10357 25 LIISPSGQMGQNLKEP 40 (252)
Q Consensus 25 ~~ipiS~~~G~ni~~~ 40 (252)
+++++||++|+|+.++
T Consensus 101 ~i~~vSA~~~~gi~eL 116 (190)
T cd01855 101 DVILISAKKGWGVEEL 116 (190)
T ss_pred cEEEEECCCCCCHHHH
Confidence 5899999999999763
Done!