Query psy10357
Match_columns 252
No_of_seqs 150 out of 1585
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 15:51:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j2k_7 ERF3, eukaryotic polype 100.0 2.6E-53 8.8E-58 389.1 29.1 248 3-252 178-425 (439)
2 3p26_A Elongation factor 1 alp 100.0 4.6E-48 1.6E-52 358.3 25.4 246 3-252 192-463 (483)
3 1f60_A Elongation factor EEF1A 100.0 1E-47 3.5E-52 353.8 24.9 246 4-252 167-427 (458)
4 1jny_A EF-1-alpha, elongation 100.0 2.1E-47 7.2E-52 349.7 26.5 247 3-252 167-415 (435)
5 1r5b_A Eukaryotic peptide chai 100.0 8.5E-49 2.9E-53 361.7 16.0 246 4-252 205-453 (467)
6 3izq_1 HBS1P, elongation facto 100.0 5.7E-47 1.9E-51 359.1 23.7 248 3-252 326-597 (611)
7 3e1y_E Eukaryotic peptide chai 100.0 1.6E-46 5.6E-51 310.7 18.6 185 68-252 3-187 (204)
8 1zun_B Sulfate adenylate trans 100.0 8.3E-45 2.8E-49 332.4 27.5 240 5-252 180-421 (434)
9 3mca_A HBS1, elongation factor 100.0 1.4E-44 4.9E-49 341.7 26.1 239 4-252 337-579 (592)
10 2c78_A Elongation factor TU-A; 100.0 2.9E-37 1E-41 280.0 16.7 228 4-252 149-391 (405)
11 1d2e_A Elongation factor TU (E 100.0 6.7E-37 2.3E-41 277.0 18.3 222 4-252 140-373 (397)
12 2elf_A Protein translation elo 100.0 7.7E-34 2.6E-38 254.6 18.0 217 5-252 133-357 (370)
13 1wb1_A Translation elongation 100.0 2.6E-35 8.7E-40 272.6 3.4 222 3-251 144-374 (482)
14 3avx_A Elongation factor TS, e 100.0 5.5E-33 1.9E-37 273.7 16.8 221 4-252 433-664 (1289)
15 1s0u_A EIF-2-gamma, translatio 100.0 1.8E-31 6E-36 242.3 20.0 202 5-251 156-392 (408)
16 1kk1_A EIF2gamma; initiation o 100.0 1.7E-30 5.9E-35 235.8 22.2 202 5-251 158-394 (410)
17 3sjy_A Translation initiation 100.0 1.7E-30 5.8E-35 235.5 20.6 201 5-249 150-385 (403)
18 2ywe_A GTP-binding protein LEP 99.4 6.3E-13 2.1E-17 125.3 10.2 118 25-156 159-282 (600)
19 1xe1_A Hypothetical protein PF 99.4 7E-12 2.4E-16 92.3 11.0 80 69-152 32-113 (116)
20 3cb4_D GTP-binding protein LEP 99.3 4.4E-12 1.5E-16 119.6 10.0 118 25-156 157-280 (599)
21 3izy_P Translation initiation 99.3 4.4E-12 1.5E-16 118.1 6.2 119 22-156 140-261 (537)
22 2h5e_A Peptide chain release f 99.2 2E-11 6.8E-16 113.8 8.7 117 20-154 248-383 (529)
23 3tr5_A RF-3, peptide chain rel 99.2 5.7E-11 1.9E-15 110.7 10.5 117 20-154 247-382 (528)
24 2rdo_7 EF-G, elongation factor 99.2 1.3E-10 4.4E-15 111.8 12.5 118 21-155 259-402 (704)
25 2dy1_A Elongation factor G; tr 99.2 1.5E-11 5E-16 117.7 4.7 115 22-156 246-368 (665)
26 1dar_A EF-G, elongation factor 99.1 2.4E-10 8.3E-15 109.7 11.2 117 22-156 254-395 (691)
27 1zo1_I IF2, translation initia 99.1 3.2E-10 1.1E-14 104.7 10.6 114 23-155 140-259 (501)
28 2xex_A Elongation factor G; GT 99.0 5.9E-10 2E-14 107.0 10.0 117 21-155 251-394 (693)
29 1g7s_A Translation initiation 99.0 9.3E-10 3.2E-14 103.8 7.8 117 21-155 189-329 (594)
30 3vqt_A RF-3, peptide chain rel 98.9 7.8E-09 2.7E-13 96.7 10.9 120 20-156 265-402 (548)
31 4fn5_A EF-G 1, elongation fact 98.6 2.1E-08 7.3E-13 96.5 5.8 119 21-156 262-406 (709)
32 3j25_A Tetracycline resistance 98.1 5.7E-08 2E-12 92.4 -5.7 114 22-155 211-331 (638)
33 1d1n_A Initiation factor 2; be 97.8 3.2E-05 1.1E-09 55.2 5.7 78 73-152 8-90 (99)
34 2crv_A IF-2MT, translation ini 97.7 0.00012 4.2E-09 54.0 7.9 79 73-153 12-99 (120)
35 1n0u_A EF-2, elongation factor 97.7 0.00015 5.2E-09 71.0 10.6 86 67-155 373-474 (842)
36 1zo1_I IF2, translation initia 97.5 0.00034 1.1E-08 64.5 9.8 94 58-153 395-493 (501)
37 1g7s_A Translation initiation 97.1 0.0039 1.3E-07 58.6 11.4 82 71-153 463-549 (594)
38 3izy_P Translation initiation 97.0 0.0025 8.7E-08 59.2 8.9 94 57-151 433-534 (537)
39 4he6_A Peptidase family U32; u 92.0 0.15 5.1E-06 35.3 3.7 55 92-150 26-85 (89)
40 3lnn_A Membrane fusion protein 57.0 72 0.0024 26.9 9.7 91 99-192 196-286 (359)
41 4dcu_A GTP-binding protein ENG 51.9 8.6 0.00029 34.3 3.0 18 23-40 342-359 (456)
42 4dhe_A Probable GTP-binding pr 51.0 3.9 0.00013 32.0 0.5 20 21-40 182-201 (223)
43 4bas_A ADP-ribosylation factor 48.4 6.6 0.00023 29.8 1.5 20 21-40 160-179 (199)
44 3j20_R 30S ribosomal protein S 46.8 56 0.0019 23.4 6.0 51 83-135 30-89 (113)
45 2hjg_A GTP-binding protein ENG 45.7 13 0.00043 33.0 3.1 18 23-40 322-339 (436)
46 4djt_A GTP-binding nuclear pro 45.0 12 0.00042 28.9 2.6 19 22-40 147-165 (218)
47 3ne5_B Cation efflux system pr 40.3 23 0.0008 31.1 3.9 70 117-187 249-318 (413)
48 4dkx_A RAS-related protein RAB 39.6 7 0.00024 31.1 0.3 17 24-40 150-166 (216)
49 2xzm_Q Ribosomal protein S17 c 37.8 60 0.0021 24.6 5.3 51 83-135 66-125 (157)
50 2j0v_A RAC-like GTP-binding pr 37.6 5.7 0.00019 30.8 -0.5 17 24-40 154-170 (212)
51 2bov_A RAla, RAS-related prote 36.8 11 0.00036 28.8 1.0 17 24-40 151-167 (206)
52 4dsu_A GTPase KRAS, isoform 2B 36.3 9.3 0.00032 28.6 0.6 17 24-40 140-156 (189)
53 1zbd_A Rabphilin-3A; G protein 35.7 13 0.00044 28.4 1.3 17 24-40 145-161 (203)
54 2cjw_A GTP-binding protein GEM 35.6 13 0.00044 28.5 1.3 17 24-40 146-162 (192)
55 1x3s_A RAS-related protein RAB 35.0 13 0.00045 27.9 1.3 17 24-40 152-168 (195)
56 3fpp_A Macrolide-specific effl 34.4 1.8E+02 0.006 24.2 8.5 73 116-189 197-271 (341)
57 3iby_A Ferrous iron transport 33.8 12 0.0004 30.7 0.8 17 24-40 141-157 (256)
58 3cph_A RAS-related protein SEC 32.9 13 0.00044 28.5 0.9 17 24-40 156-172 (213)
59 2qu8_A Putative nucleolar GTP- 32.8 16 0.00056 28.6 1.5 17 24-40 179-195 (228)
60 2f9h_A PTS system, IIA compone 32.5 57 0.002 23.9 4.3 24 93-118 52-75 (129)
61 3u5c_L RP41, S18, YS12, 40S ri 31.7 73 0.0025 24.1 4.8 50 84-135 68-126 (156)
62 1vg8_A RAS-related protein RAB 31.0 15 0.00051 28.0 1.0 19 22-40 147-165 (207)
63 2zkq_q 40S ribosomal protein S 30.9 67 0.0023 24.4 4.5 50 83-134 69-128 (158)
64 2f7s_A C25KG, RAS-related prot 30.1 15 0.00051 28.4 0.8 17 24-40 173-189 (217)
65 3iev_A GTP-binding protein ERA 30.0 18 0.0006 30.4 1.3 18 23-40 155-172 (308)
66 3tkl_A RAS-related protein RAB 29.8 15 0.00052 27.6 0.8 17 24-40 153-169 (196)
67 3tw8_B RAS-related protein RAB 29.6 16 0.00054 27.0 0.9 18 23-40 144-161 (181)
68 2bcg_Y Protein YP2, GTP-bindin 29.5 16 0.00053 28.0 0.8 17 24-40 145-161 (206)
69 3lnn_A Membrane fusion protein 29.5 2E+02 0.0069 24.0 8.1 90 142-231 184-284 (359)
70 2fu5_C RAS-related protein RAB 29.4 17 0.00057 27.1 1.0 18 23-40 144-161 (183)
71 2gf0_A GTP-binding protein DI- 29.3 19 0.00065 27.1 1.3 17 24-40 145-161 (199)
72 3cpj_B GTP-binding protein YPT 28.9 19 0.00064 28.2 1.2 17 24-40 150-166 (223)
73 3lvq_E ARF-GAP with SH3 domain 27.5 28 0.00097 31.1 2.3 20 21-40 455-474 (497)
74 2o52_A RAS-related protein RAB 27.5 21 0.0007 27.3 1.2 19 22-40 160-178 (200)
75 2yc2_C IFT27, small RAB-relate 27.3 21 0.00072 27.0 1.2 17 24-40 165-182 (208)
76 2bme_A RAB4A, RAS-related prot 27.2 21 0.00073 26.5 1.2 19 22-40 145-163 (186)
77 2ew1_A RAS-related protein RAB 26.5 19 0.00064 27.8 0.8 18 23-40 162-179 (201)
78 1mky_A Probable GTP-binding pr 26.4 28 0.00097 30.7 2.1 17 24-40 329-345 (439)
79 3b1v_A Ferrous iron uptake tra 26.3 19 0.00064 29.8 0.8 17 24-40 138-154 (272)
80 3gj0_A GTP-binding nuclear pro 26.0 26 0.00088 27.2 1.6 18 23-40 148-165 (221)
81 4b6m_A Tubulin-specific chaper 25.7 1.5E+02 0.0053 19.8 5.4 39 95-137 5-43 (84)
82 3a1s_A Iron(II) transport prot 25.3 20 0.00067 29.3 0.7 17 24-40 141-157 (258)
83 2yv5_A YJEQ protein; hydrolase 24.4 28 0.00096 29.1 1.6 17 24-40 143-159 (302)
84 3p32_A Probable GTPase RV1496/ 23.9 21 0.00073 30.5 0.7 18 23-40 257-274 (355)
85 3i8s_A Ferrous iron transport 23.7 26 0.00087 28.8 1.2 17 24-40 143-159 (274)
86 3bc1_A RAS-related protein RAB 23.5 23 0.0008 26.3 0.8 18 23-40 158-175 (195)
87 2wjg_A FEOB, ferrous iron tran 23.3 23 0.00078 26.4 0.7 17 24-40 143-159 (188)
88 3t5g_A GTP-binding protein RHE 22.0 16 0.00056 27.1 -0.4 18 23-40 142-159 (181)
89 3ld7_A LIN0431 protein; DUF131 20.5 36 0.0012 23.8 1.2 26 91-116 65-91 (101)
No 1
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=2.6e-53 Score=389.14 Aligned_cols=248 Identities=57% Similarity=0.965 Sum_probs=235.1
Q ss_pred hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEcC
Q psy10357 3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKD 82 (252)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~g 82 (252)
+.+..++..+++++++-..++++|+|+||++|+|+.++. +.++||+|++|+++|+.+++|.+..+.||||+|+++|+|
T Consensus 178 ~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~--~~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~~~~~~ 255 (439)
T 3j2k_7 178 EECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQS--DFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYKD 255 (439)
T ss_pred HHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccccc--ccccccCchHHHHHHHhCCCCccCCCCCeEEEEEEEEcC
Confidence 456677888888888632347899999999999999987 789999999999999999999888999999999999999
Q ss_pred CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceecE
Q psy10357 83 MGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARV 162 (252)
Q Consensus 83 ~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~ 162 (252)
.|++++|+|++|.|++||.|.++|+++.++|++|+++++++++|.|||+|+|+|+|++..+++|||+||++++++..++.
T Consensus 256 ~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~~~~~~~~~~ 335 (439)
T 3j2k_7 256 MGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPSNLCHSGRT 335 (439)
T ss_pred CCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEECCeEcCEecCCCcceEEEeccchhhcCCcEEecCCCCCCceeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred EEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCCC
Q psy10357 163 FDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFP 242 (252)
Q Consensus 163 f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~ 242 (252)
|+|+|.||++++++.+||++.+|||+.+++|+|.+|.+++|.+||++.+..|++|+.||.+.|++++.+|+|+|+|++++
T Consensus 336 f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~~~~v~~~~~~p~~~e~~~~~~ 415 (439)
T 3j2k_7 336 FDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFP 415 (439)
T ss_pred EEEEEEEeCCCCcCCCCCEEEEEEeceEEEEEEEEEEEeecCCchhhhccCcceecCCcEEEEEEEeCCeEEEeeccccc
Confidence 99999999998889999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred CceeEEEEeC
Q psy10357 243 QMGRFTLRDE 252 (252)
Q Consensus 243 ~lgrfilrd~ 252 (252)
.||||+|||+
T Consensus 416 ~~g~f~l~d~ 425 (439)
T 3j2k_7 416 QMGRFTLRDE 425 (439)
T ss_pred cCCCEEEEEC
Confidence 9999999995
No 2
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=4.6e-48 Score=358.32 Aligned_cols=246 Identities=22% Similarity=0.332 Sum_probs=224.4
Q ss_pred hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCc---CCCCccCchHHhhccC----CC--CCCCCCCCee
Q psy10357 3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEI---CTWWKGGAFIPFIDAL----PS--LNRKMDGPFL 73 (252)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~---~~w~~g~~L~~~l~~i----~~--~~~~~~~p~~ 73 (252)
+.++.++..+++++++ .+++++|+|+||++|+|+.+++ .. ++||+|++|+++|+.+ +. |.+..+.|||
T Consensus 192 ~~i~~~~~~~l~~~g~-~~~~~~~i~iSA~~g~gi~el~--~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r 268 (483)
T 3p26_A 192 EEIKSKLLPYLVDIGF-FEDNINWVPISGFSGEGVYKIE--YTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFL 268 (483)
T ss_dssp HHHHHHHHHHHHHHTC-CGGGEEEEECCSSSCTTSSSSC--CCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCE
T ss_pred HHHHHHHHHHHHHcCC-CcccceEEEEeeecCCCccccC--cccccccccCCCCHHHHHHHHHhhcccccccccCCCceE
Confidence 3456677777777775 4567899999999999999876 33 8999999999999887 22 4567889999
Q ss_pred EEEeeEEc-----CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCC--------ccceeecCCCeEEEEEeeeC
Q psy10357 74 MPVVEKFK-----DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDD--------EEVSSVGPGENIKVKLKGIE 140 (252)
Q Consensus 74 ~~I~~~~~-----g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~--------~~v~~a~aG~~v~l~l~~~~ 140 (252)
|+|+++|+ |.|++++|+|++|.|++||.|.++|++..++|++|++++ +++++|.|||+|+|+|++++
T Consensus 269 ~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~~ 348 (483)
T 3p26_A 269 FSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAY 348 (483)
T ss_dssp EEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-----CCEESCEETTCEEEEEEESCC
T ss_pred EEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccccccccccccEECCCCEEEEEEEecc
Confidence 99999996 479999999999999999999999999999999999995 89999999999999999988
Q ss_pred CCCccceeEEeCCCC-CcceecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecC
Q psy10357 141 EDDVSPGFVLCDPNN-PARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQ 219 (252)
Q Consensus 141 ~~~i~~G~vl~~~~~-~~~~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~ 219 (252)
..+++|||+||++++ |+..+..|+|++.|++++.++.+|+++.+|+|+.+++|+|.+|.+++|.+|++. +..|++|++
T Consensus 349 ~~di~rG~vl~~~~~~~~~~~~~f~a~v~~l~~~~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~~-~~~~~~l~~ 427 (483)
T 3p26_A 349 PEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KKKIRHLGS 427 (483)
T ss_dssp GGGCCTTCEEECTTCCCCEECSEEEEEEEECSCSSCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEEC-CSCCSCBCS
T ss_pred cccCCceEEEEcCCCCCCceeeEEEEEEEEECCCCCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCCccc-ccCccCcCC
Confidence 899999999999987 889999999999999988889999999999999999999999999999999876 567899999
Q ss_pred CCEEEEEEEe---CceEEeeecCCCCCceeEEEEeC
Q psy10357 220 DQIAIMRLEA---AGVICLDQFKLFPQMGRFTLRDE 252 (252)
Q Consensus 220 g~~~~v~l~l---~~~i~~~~~~~~~~lgrfilrd~ 252 (252)
||.|.|++.+ .+|+|+|+|++++.||||+|||+
T Consensus 428 ~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~~ 463 (483)
T 3p26_A 428 KQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKD 463 (483)
T ss_dssp SCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEET
T ss_pred CCEEEEEEEECCCCCcEEEEecccCccCCCEEEEeC
Confidence 9999999999 88999999999999999999984
No 3
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=1e-47 Score=353.76 Aligned_cols=246 Identities=27% Similarity=0.521 Sum_probs=230.1
Q ss_pred hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCc------------cCchHHhhccCCCCCCCCCCC
Q psy10357 4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWK------------GGAFIPFIDALPSLNRKMDGP 71 (252)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~------------g~~L~~~l~~i~~~~~~~~~p 71 (252)
.+..+++.+++.+++ ++++++|+|+||++|+|+.++. ..++||+ |++|+++|+.+++|.+..+.|
T Consensus 167 ~i~~~~~~~l~~~g~-~~~~~~~i~vSA~~g~nv~~~~--~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~~p~~~~~~p 243 (458)
T 1f60_A 167 EIVKETSNFIKKVGY-NPKTVPFVPISGWNGDNMIEAT--TNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPTDKP 243 (458)
T ss_dssp HHHHHHHHHHHHHTC-CGGGCCEEECCTTTCBTTTBCC--SSCTTCCCEEEECSSSEEEESSHHHHHHTSCCCCCCTTSC
T ss_pred HHHHHHHHHHHHcCC-CccCceEEEeecccCcCccccc--ccCchhhcccccccccccchHHHHHHhhccCCCcccCCCC
Confidence 455677777777775 4456899999999999999887 6799998 679999999999998889999
Q ss_pred eeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeE
Q psy10357 72 FLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV 149 (252)
Q Consensus 72 ~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v 149 (252)
|||+|+++|+ |.|++++|+|++|.+++||.|.++|.+..++|++|+.+++++++|.|||+|++.|+|++..++++|++
T Consensus 244 ~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~~~~i~rG~v 323 (458)
T 1f60_A 244 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIRRGNV 323 (458)
T ss_dssp CEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEETTEECSCBCTTCEEEEEESSCCTTTSCTTCE
T ss_pred cEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEECCeEEEEEcCCCEEEEEEcCCcccccCceeE
Confidence 9999999997 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCC-CcceecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEE
Q psy10357 150 LCDPNN-PARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLE 228 (252)
Q Consensus 150 l~~~~~-~~~~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~ 228 (252)
|+++++ |+..++.|+|++.||+++.++.+||++++|+|+.+++|+|..|.+++|.+|++..+..|++|++||.+.|+|.
T Consensus 324 l~~~~~~~~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~ 403 (458)
T 1f60_A 324 CGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFV 403 (458)
T ss_dssp EEETTSSCCCCCSEEEEEEEECSCSCCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTTCEEEEEEE
T ss_pred EecCCCCCCceeeEEEEEEEEeCCCCCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCccccCCCCEEEEEEE
Confidence 999975 8889999999999999888899999999999999999999999999999999988888899999999999999
Q ss_pred eCceEEeeecCCCCCceeEEEEeC
Q psy10357 229 AAGVICLDQFKLFPQMGRFTLRDE 252 (252)
Q Consensus 229 l~~~i~~~~~~~~~~lgrfilrd~ 252 (252)
+.+|+|++.|++++.||||+|||.
T Consensus 404 ~~~p~~~~~~~~~~~~grf~lr~~ 427 (458)
T 1f60_A 404 PSKPMCVEAFSEYPPLGRFAVRDM 427 (458)
T ss_dssp ESSCCCCCCTTTCGGGSEEEEEET
T ss_pred ECCeEEEecCccCCCCCcEEEEEC
Confidence 999999999999999999999984
No 4
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=2.1e-47 Score=349.67 Aligned_cols=247 Identities=28% Similarity=0.574 Sum_probs=230.9
Q ss_pred hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc-
Q psy10357 3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK- 81 (252)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~- 81 (252)
+.+..+++.+++.+++ .+.+++++|+||++|+|+.+.. ..++||+|++|+++|+.+++|.+..+.||+|+|+++|+
T Consensus 167 ~~~~~~i~~~~~~~~~-~~~~~~~i~iSA~~g~~v~e~~--~~~~~~~g~~Ll~~l~~~~~p~~~~~~~~~~~v~~v~~~ 243 (435)
T 1jny_A 167 KEIVDQVSKFMRSYGF-NTNKVRFVPVVAPSGDNITHKS--ENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYSI 243 (435)
T ss_dssp HHHHHHHHHHHHHTTC-CCTTCEEEECBTTTTBTTTBCC--SSCTTCCSCCHHHHHTTCCCCCCGGGSCCBEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCC-CcCCceEEEeecccCccccccc--cccccccchhHHHHHhccCCCCCCCCCCeEEEEEEEEEe
Confidence 3456778888887775 4456899999999999999886 66899999999999999988887778999999999997
Q ss_pred -CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCccee
Q psy10357 82 -DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTA 160 (252)
Q Consensus 82 -g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~ 160 (252)
|.|++++|+|.+|+|++||.|.++|.+...+|++|+++++++++|.|||+|++.|+|++..++++||+||++++++..+
T Consensus 244 ~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~~~~~~~~~ 323 (435)
T 1jny_A 244 SGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNPPTVA 323 (435)
T ss_dssp TTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEEECTTSCCCEE
T ss_pred CCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCccEecCCCCCceEe
Confidence 8899999999999999999999999999999999999999999999999999999999889999999999998888999
Q ss_pred cEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCC
Q psy10357 161 RVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKL 240 (252)
Q Consensus 161 ~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~ 240 (252)
..|.|++.|++++.++.+|+++++|+|+.+++|+|..|.+++|.+|++..+..|++|++||.+.|+|++.+|+|++.|++
T Consensus 324 ~~f~a~v~~l~~~~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~~ 403 (435)
T 1jny_A 324 DEFTARIIVVWHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNE 403 (435)
T ss_dssp SEEEEEEEECCCSSCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEESSCEECCCTTT
T ss_pred EEEEEEEEEECCCCcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEEEECceEEEecCCc
Confidence 99999999999888899999999999999999999999999999999888878899999999999999999999999999
Q ss_pred CCCceeEEEEeC
Q psy10357 241 FPQMGRFTLRDE 252 (252)
Q Consensus 241 ~~~lgrfilrd~ 252 (252)
++.||||+|||.
T Consensus 404 ~~~~grf~lr~~ 415 (435)
T 1jny_A 404 FPPLGRFAMRDM 415 (435)
T ss_dssp SGGGTEEEEEET
T ss_pred CCcCccEEEEEC
Confidence 999999999984
No 5
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=8.5e-49 Score=361.72 Aligned_cols=246 Identities=36% Similarity=0.688 Sum_probs=228.2
Q ss_pred hHHHHHHhccccc-cccc-CceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc
Q psy10357 4 SVKYAVSFWQPKL-WTVR-QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK 81 (252)
Q Consensus 4 ~~~~~~~~~l~~~-~~~~-~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~ 81 (252)
.+..++..+++++ ++ . ..+++|+|+||++|+|+.++.....++||+|++|+++|+.++.|.++.+.||+|+|+++|+
T Consensus 205 ~i~~e~~~~l~~~~g~-~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~v~~~~~ 283 (467)
T 1r5b_A 205 ECVDKLSMFLRRVAGY-NSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIASKYK 283 (467)
T ss_dssp HHHHHHHHHHHHHHCC-CHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHHCCCCHHHHTSCCEEECCEEEE
T ss_pred HHHHHHHHHHHHhcCC-CccCCceEEecccccccccccccccccCccccchhHHHHHHhCCCCcCCCCCCcEEEEEEEEe
Confidence 4556788888777 54 2 2478999999999999988764457899999999999999998888888999999999999
Q ss_pred CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC-CccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCccee
Q psy10357 82 DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD-DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTA 160 (252)
Q Consensus 82 g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~ 160 (252)
+.|++++|+|.+|.|++||.|.++|.++.++|++|+++ ++++++|.|||+|+++|+| +..++++||+||++++++..+
T Consensus 284 ~~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g-~~~~i~rG~vl~~~~~~~~~~ 362 (467)
T 1r5b_A 284 DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTGYVLTSTKNPVHAT 362 (467)
T ss_dssp SSSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECTTCCEESEEETTCEEEEEEES-CCTTCCTTCEEECSSSCCCEE
T ss_pred CCCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEeccCCcEeeEEcCCCEEEEEEec-cHhhCCceEEEeCCCCCCccc
Confidence 99999999999999999999999999999999999998 8999999999999999999 889999999999999889999
Q ss_pred cEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCC
Q psy10357 161 RVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKL 240 (252)
Q Consensus 161 ~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~ 240 (252)
+.|+|++.||++++++.+||++.+|+|+.+++|++..|.+.+|. +|++.+..|++|++||.+.|+|.+++|+|++.|++
T Consensus 363 ~~f~a~v~~l~~~~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~-~~~~~~~~~~~l~~g~~~~v~l~~~~p~~~~~~~~ 441 (467)
T 1r5b_A 363 TRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPVCMERFED 441 (467)
T ss_dssp EEEEEEEEECSSCCCBSSCCCBEEESSSCCCCBEESSCCCCCCS-SCCCCSSCCSBCCTTCBCCEEEEEEEEEECCCTTT
T ss_pred eEEEEEEEEeCCCCccCCCCEEEEEEeCCEEEEEEEEEEEEecC-CccccccCccccCCCCEEEEEEEECcEEEEEEcCc
Confidence 99999999999988899999999999999999999999888998 88887778899999999999999999999999999
Q ss_pred CCCceeEEEEeC
Q psy10357 241 FPQMGRFTLRDE 252 (252)
Q Consensus 241 ~~~lgrfilrd~ 252 (252)
++.||||+|||+
T Consensus 442 ~~~~grf~lrd~ 453 (467)
T 1r5b_A 442 YQYMGRFTLRDQ 453 (467)
T ss_dssp CHHHHEEEEECS
T ss_pred CCCCccEEEEEC
Confidence 999999999985
No 6
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-47 Score=359.11 Aligned_cols=248 Identities=22% Similarity=0.333 Sum_probs=224.2
Q ss_pred hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCC-CcCCCCccCchHHhhccC--CC----CCCCCCCCeeEE
Q psy10357 3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGP-EICTWWKGGAFIPFIDAL--PS----LNRKMDGPFLMP 75 (252)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~-~~~~w~~g~~L~~~l~~i--~~----~~~~~~~p~~~~ 75 (252)
+.+..++..++++++. .+.+++|+|+||++|+|+.+++.. ..++||+||+|.++|+.+ .. |.+..+.||||+
T Consensus 326 ~ei~~~l~~~l~~~g~-~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r~~ 404 (611)
T 3izq_1 326 EEIKSKLLPYLVDIGF-FEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFS 404 (611)
T ss_dssp HHHHHHHHHHHHHHTC-CGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCEEE
T ss_pred HHHHHHHHHHHHhhcc-cccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchhhh
Confidence 3456677777777775 455789999999999999987522 228999999999999988 22 345678999999
Q ss_pred EeeEEc-----CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCC--------ccceeecCCCeEEEEEeeeCCC
Q psy10357 76 VVEKFK-----DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDD--------EEVSSVGPGENIKVKLKGIEED 142 (252)
Q Consensus 76 I~~~~~-----g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~--------~~v~~a~aG~~v~l~l~~~~~~ 142 (252)
|+++|+ |.|++++|+|++|.|++||.|.++|++..++|++|++++ .++++|.|||+|+|+|++++..
T Consensus 405 V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~~~~ 484 (611)
T 3izq_1 405 VLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPE 484 (611)
T ss_dssp CCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSCCTT
T ss_pred eeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccccccceecCCCcceEEeeeccHh
Confidence 999996 478999999999999999999999999999999999995 8999999999999999999899
Q ss_pred CccceeEEeCCCC-CcceecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCC
Q psy10357 143 DVSPGFVLCDPNN-PARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQ 221 (252)
Q Consensus 143 ~i~~G~vl~~~~~-~~~~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~ 221 (252)
+++||++||+++. |+..+..|+|+|.|++++.+|.+|+++++|+|+.+++|+|..|.+++|.+|++. +..|++|++||
T Consensus 485 di~rGdvl~~~~~~~~~~~~~f~a~v~~l~~~~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~-~~~~~~l~~~d 563 (611)
T 3izq_1 485 DIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KKKIRHLGSKQ 563 (611)
T ss_dssp SCCTTCEEBCSTTCSCCCBSCEEEEEEECSCSSCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBC-TTCSCSSSSCC
T ss_pred hCcceEEccCCCCCCCceeeEEEEEEEEECCCCCCCCCCEEEEEECCeEeeEEeeeeeeeeccccccc-ccCccccCCCC
Confidence 9999999999987 889999999999999988899999999999999999999999999999999987 66789999999
Q ss_pred EEEEEEEe---CceEEeeecCCCCCceeEEEEeC
Q psy10357 222 IAIMRLEA---AGVICLDQFKLFPQMGRFTLRDE 252 (252)
Q Consensus 222 ~~~v~l~l---~~~i~~~~~~~~~~lgrfilrd~ 252 (252)
.|.|+|.+ .+|+|+++|++++.||||+|||.
T Consensus 564 ~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~~ 597 (611)
T 3izq_1 564 RAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKD 597 (611)
T ss_dssp SEEEEEEESSCSSCBCCCCTTTCHHHHEEEEESS
T ss_pred EEEEEEEECCCCCceEEeecccCCCCCcEEEEeC
Confidence 99999999 78999999999999999999974
No 7
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-46 Score=310.68 Aligned_cols=185 Identities=65% Similarity=1.108 Sum_probs=176.8
Q ss_pred CCCCeeEEEeeEEcCCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccce
Q psy10357 68 MDGPFLMPVVEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPG 147 (252)
Q Consensus 68 ~~~p~~~~I~~~~~g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G 147 (252)
.++||||+|+++|+|.|++++|+|++|.+++||.|.++|+++.++|++|+++++++++|.|||+|+|+|+|++..|++||
T Consensus 3 ~~~p~rl~v~~v~~g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~~di~rG 82 (204)
T 3e1y_E 3 LGSPIRLPIVDKYKDMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEEILPG 82 (204)
T ss_dssp ----CBEEEEEEEESSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSSSSCBSEECTTSEEEEEEEESSSSCCCTT
T ss_pred CCCCEEEEEEEEEcCCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEECCEEeEEECCCCEEEEEEcCCCHHHCccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeCCCCCcceecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEE
Q psy10357 148 FVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRL 227 (252)
Q Consensus 148 ~vl~~~~~~~~~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l 227 (252)
|+||++++++..++.|+|++.||++++++.+||++.+|+|+.+++|+|.+|.+++|.+||++.+..|++|++||.|.|+|
T Consensus 83 ~vl~~~~~~~~~~~~f~a~v~~l~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~gd~a~v~l 162 (204)
T 3e1y_E 83 FILCDPNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARL 162 (204)
T ss_dssp CEEBCSSSCCCCCSEEEEEEECCSCCSCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCCTTCEEEEEE
T ss_pred eEEECCCCCCchhEEEEEEEEEeCCCCccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcCCCCEEEEEE
Confidence 99999999888999999999999998889999999999999999999999999999999998888899999999999999
Q ss_pred EeCceEEeeecCCCCCceeEEEEeC
Q psy10357 228 EAAGVICLDQFKLFPQMGRFTLRDE 252 (252)
Q Consensus 228 ~l~~~i~~~~~~~~~~lgrfilrd~ 252 (252)
++++|+|+|+|++++.||||+|||+
T Consensus 163 ~~~~pi~~e~~~~~~~~Grfilrd~ 187 (204)
T 3e1y_E 163 RTAGTICLETFKDFPQMGRFTLRDE 187 (204)
T ss_dssp EESSCCCCCCTTSSGGGTEEEEECS
T ss_pred EECCeEEEEEcccCcCCCCEEEEEC
Confidence 9999999999999999999999985
No 8
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=8.3e-45 Score=332.39 Aligned_cols=240 Identities=18% Similarity=0.281 Sum_probs=220.7
Q ss_pred HHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc--C
Q psy10357 5 VKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK--D 82 (252)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~--g 82 (252)
+..++..+++.+++ +..+++++|+||++|+|+.++. ..++||+|++|+++|+.++.|.+..+.||||+|+++|+ +
T Consensus 180 i~~~~~~~~~~~g~-~~~~~~~i~vSA~~g~gi~~~~--~~~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v~~v~~~~~ 256 (434)
T 1zun_B 180 IKADYLKFAEGIAF-KPTTMAFVPMSALKGDNVVNKS--ERSPWYAGQSLMEILETVEIASDRNYTDLRFPVQYVNRPNL 256 (434)
T ss_dssp HHHHHHHHHHTTTC-CCSEEEEEECCTTTCTTTSSCC--TTCTTCCSCCTTHHHHHSCCTTCCCSSSCEEECCEEECSSS
T ss_pred HHHHHHHHHHHhCC-CccCceEEEEeccCCCCccccc--ccCccccCchHHHHHhcCCCcccCCCCCcEEEEEEEeccCC
Confidence 45667777777763 3467899999999999999887 78999999999999999998888889999999999986 5
Q ss_pred CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceecE
Q psy10357 83 MGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARV 162 (252)
Q Consensus 83 ~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~ 162 (252)
.|+.+.|+|.+|+|++||.|.++|+++.++|++|+.++.++++|.|||+|+++++ +..++++||+|++++.++..++.
T Consensus 257 ~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~--~~~~i~~G~~l~~~~~~~~~~~~ 334 (434)
T 1zun_B 257 NFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGPGQAVTLTME--DEIDISRGDLLVHADNVPQVSDA 334 (434)
T ss_dssp SCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETTEEESEECTTCEEEEEES--SCCCCCTTCEEEETTSCCCEEEE
T ss_pred CceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcCcceeEecCCCEEEEEeC--CccccCCccEEECCCCCCCcccE
Confidence 6788999999999999999999999999999999999999999999999999998 56789999999999998899999
Q ss_pred EEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCCC
Q psy10357 163 FDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFP 242 (252)
Q Consensus 163 f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~ 242 (252)
|+|++.|++ +.++.+|+++++|+|+.+++|+|..+.+++|.+|+++ ..+++|++||.+.|+|++++|+|+++|++++
T Consensus 335 f~a~~~~l~-~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~~--~~~~~l~~~d~~~v~~~~~~p~~~~~~~~~~ 411 (434)
T 1zun_B 335 FDAMLVWMA-EEPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLEE--GPASSLQLNEIGRVKVSLDAPIALDGYSSNR 411 (434)
T ss_dssp EEEEEEECC-SSCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCCC--CCCSCBCTTCEEEEEEEEEEEEECCCTTTCT
T ss_pred EEEEEEEec-cccCCCCCEEEEEEcCCEEEEEEEEEeeeeccccccc--cCccEeCCCCEEEEEEEECCeEEEcccccCC
Confidence 999999997 5579999999999999999999999999999999884 4578999999999999999999999999999
Q ss_pred CceeEEEEeC
Q psy10357 243 QMGRFTLRDE 252 (252)
Q Consensus 243 ~lgrfilrd~ 252 (252)
.||||+|||+
T Consensus 412 ~~grf~l~d~ 421 (434)
T 1zun_B 412 TTGAFIVIDR 421 (434)
T ss_dssp TTTEEEEECT
T ss_pred ccceEEEEEC
Confidence 9999999984
No 9
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-44 Score=341.69 Aligned_cols=239 Identities=22% Similarity=0.400 Sum_probs=218.5
Q ss_pred hHHHHHHhcc-cccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc-
Q psy10357 4 SVKYAVSFWQ-PKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK- 81 (252)
Q Consensus 4 ~~~~~~~~~l-~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~- 81 (252)
.+..++..++ +.+++ ..++++|+|+||++|+|+.+++....++||+|++|++.|+.+.+|.+..+.||+|+|+++|+
T Consensus 337 ~i~~el~~~l~~~~g~-~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~pp~~~~~~p~r~~v~~v~~~ 415 (592)
T 3mca_A 337 EIKNIVSDFLIKMVGF-KTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPEKPYRKPLRLSIDDVYRS 415 (592)
T ss_dssp HHHHHHHHHHTTTSCC-CGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCCCSCTTTSCCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhCC-CccceEEEEEecccCcccccccccccccccchHHHHHHHHhhccccccccccchheeeEEEec
Confidence 4567777777 77775 56788999999999999988764347999999999999999877888889999999999997
Q ss_pred CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccce-eecCCCeEEEEEeeeCCCCccceeEEeCCCCCccee
Q psy10357 82 DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVS-SVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTA 160 (252)
Q Consensus 82 g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~-~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~ 160 (252)
|.|++++|+|.+|.|++||.|.++|.+..++|++|++++++++ +|.|||+|+++|+|++..++++||+||+++.|+..+
T Consensus 416 ~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~~~~~~~~ 495 (592)
T 3mca_A 416 PRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYENPVRRV 495 (592)
T ss_dssp TTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEECSSSCCEEE
T ss_pred CCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEcCccCcceecCCCEEEEEEccccccccceEEEeccCCCCcccc
Confidence 7899999999999999999999999999999999999999999 999999999999999999999999999999988999
Q ss_pred cEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEE-eCceEEeeecC
Q psy10357 161 RVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLE-AAGVICLDQFK 239 (252)
Q Consensus 161 ~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~-l~~~i~~~~~~ 239 (252)
..|+|++.||+++.++.+|+++++|+|+.+++|+| .|... .+..+++|++||.+.|+|. +.+|+|+|+|+
T Consensus 496 ~~f~a~v~~~~~~~pi~~g~~~~l~~~t~~~~~~i-~l~~~--------~~~~~~~l~~gd~~~v~l~fl~~p~~~e~~~ 566 (592)
T 3mca_A 496 RSFVAEIQTFDIHGPILSGSTLVLHLGRTVTSVSL-KIVTV--------NNKRSRHIASRKRALVRISFLDGLFPLCLAE 566 (592)
T ss_dssp SEEEEEEEECSCSSCEETTEEEEEECSSCEEEEEE-EEEES--------SSSCCSEECSSCEEEEEEEESSSCEEECCTT
T ss_pred CeEEEEEEEECCCccCCCCCEEEEEEcCcEEEEEE-EEEec--------cccchhccCCCCEEEEEEEECCCcEEEEecc
Confidence 99999999999988899999999999999999999 77541 1335689999999999999 99999999999
Q ss_pred CCCCceeEEEEeC
Q psy10357 240 LFPQMGRFTLRDE 252 (252)
Q Consensus 240 ~~~~lgrfilrd~ 252 (252)
+++.+|||+|||.
T Consensus 567 ~~~~~~rfilr~~ 579 (592)
T 3mca_A 567 ECPALGRFILRRS 579 (592)
T ss_dssp TCHHHHEEEEESS
T ss_pred CCCCCCeEEEEEC
Confidence 9999999999973
No 10
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=2.9e-37 Score=280.03 Aligned_cols=228 Identities=21% Similarity=0.321 Sum_probs=196.8
Q ss_pred hHHHHHHhcccccccccCceeEEEecccccCCcccCCCC---CCcCCCCcc-CchHHhhcc-CCCCCCCCCCCeeEEEee
Q psy10357 4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVG---PEICTWWKG-GAFIPFIDA-LPSLNRKMDGPFLMPVVE 78 (252)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~---~~~~~w~~g-~~L~~~l~~-i~~~~~~~~~p~~~~I~~ 78 (252)
.+..++..+++++++ ..++++++|+||++|+|+.+.+. +..++||.+ ..|++.|.. +|.|.+..+.||+|+|++
T Consensus 149 ~~~~~~~~~l~~~~~-~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~ 227 (405)
T 2c78_A 149 LVEMEVRDLLNQYEF-PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVED 227 (405)
T ss_dssp HHHHHHHHHHHHTTS-CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCEEECCE
T ss_pred HHHHHHHHHHHHhcc-cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCcEEEEEE
Confidence 345577777877764 44568999999999998643321 135789976 567777766 888888889999999999
Q ss_pred EEc--CCCeEEEEEEEEeeeecCCEEEEecCC---ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCC
Q psy10357 79 KFK--DMGTVVMGKVESGEAKKGQSLVLMPNR---TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDP 153 (252)
Q Consensus 79 ~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~---~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 153 (252)
+|+ |.|++++|+|.+|+|++||.|.++|.+ ..++|++|+++++++++|.|||+|++.|+|++..++++||+||++
T Consensus 228 v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~ 307 (405)
T 2c78_A 228 VFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKP 307 (405)
T ss_dssp EEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSCCTTTCCTTCEEEST
T ss_pred EEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEEEECCCcHhhcCceEEEEcC
Confidence 996 889999999999999999999999998 699999999999999999999999999999999999999999999
Q ss_pred CCCcceecEEEEEEEEeccC-----CcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEE
Q psy10357 154 NNPARTARVFDAQIVILEHK-----SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLE 228 (252)
Q Consensus 154 ~~~~~~~~~f~a~i~~~~~~-----~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~ 228 (252)
+. +..++.|+|++.||+++ .++.+||++.+|+++.+++|+|. +. + .++++++||.+.|+|+
T Consensus 308 ~~-~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-~~---~---------~~~~l~~~~~~~v~~~ 373 (405)
T 2c78_A 308 GS-ITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQ-LP---P---------GVEMVMPGDNVTFTVE 373 (405)
T ss_dssp TS-SEEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC---T---------TCCCBCTTCEEEEEEE
T ss_pred CC-CceeEEEEEEEEEecccCCCccccccCCceEEEEEcccEEEEEEE-Ec---c---------CccccCCCCEEEEEEE
Confidence 85 67899999999999854 57999999999999999999987 31 1 2368999999999999
Q ss_pred eCceEEeeecCCCCCceeEEEEeC
Q psy10357 229 AAGVICLDQFKLFPQMGRFTLRDE 252 (252)
Q Consensus 229 l~~~i~~~~~~~~~~lgrfilrd~ 252 (252)
+.+|+|++.+ +||+|||.
T Consensus 374 ~~~p~~~~~~------~rf~lr~~ 391 (405)
T 2c78_A 374 LIKPVALEEG------LRFAIREG 391 (405)
T ss_dssp EEEEEEECTT------CEEEEEET
T ss_pred ECceEEEccC------CEEEEEcC
Confidence 9999999987 59999984
No 11
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=6.7e-37 Score=277.02 Aligned_cols=222 Identities=21% Similarity=0.295 Sum_probs=195.6
Q ss_pred hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCcc--CchHHhhcc-CCCCCCCCCCCeeEEEeeEE
Q psy10357 4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKG--GAFIPFIDA-LPSLNRKMDGPFLMPVVEKF 80 (252)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g--~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~ 80 (252)
.+..++..+++++++ .+++++++|+||++|+|. .+++||.| ..|++.|.. ++.|.++.+.||+|+|+++|
T Consensus 140 ~~~~~~~~~l~~~~~-~~~~~~~i~~SA~~g~n~------~~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~ 212 (397)
T 1d2e_A 140 LVELEIRELLTEFGY-KGEETPIIVGSALCALEQ------RDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVY 212 (397)
T ss_dssp HHHHHHHHHHHHTTS-CTTTSCEEECCHHHHHTT------CCTTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEE
T ss_pred HHHHHHHHHHHHcCC-CcccCcEEEeehhhcccc------cCCCccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEE
Confidence 355677888887775 455789999999999984 34789987 678887766 88888888999999999999
Q ss_pred c--CCCeEEEEEEEEeeeecCCEEEEecCC--ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCC
Q psy10357 81 K--DMGTVVMGKVESGEAKKGQSLVLMPNR--TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNP 156 (252)
Q Consensus 81 ~--g~G~vv~G~v~~G~l~~gd~v~i~p~~--~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 156 (252)
+ |.|++++|+|.+|.|++||.|.++|.+ +.++|++|+++++++++|.|||+|++.|+|++..++++||+||+++.
T Consensus 213 ~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~~- 291 (397)
T 1d2e_A 213 SIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGS- 291 (397)
T ss_dssp EETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETTEEESEEETTCEEEEEESSCCGGGCCTTCEEESTTS-
T ss_pred EeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEECCcccCEecCCCceEEEecccchhccCceeEEeCCCC-
Confidence 6 899999999999999999999999986 78999999999999999999999999999998899999999999885
Q ss_pred cceecEEEEEEEEeccC-----CcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCc
Q psy10357 157 ARTARVFDAQIVILEHK-----SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAG 231 (252)
Q Consensus 157 ~~~~~~f~a~i~~~~~~-----~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~ 231 (252)
+..++.|+|++.||+++ .++.+|+++.+|+++.+++|+|. +. + .++++++||.+.|+|++.+
T Consensus 292 ~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-l~---~---------~~~~l~~~~~~~v~~~~~~ 358 (397)
T 1d2e_A 292 IQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRII-LP---P---------GKELAMPGEDLKLTLILRQ 358 (397)
T ss_dssp CCCEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC---S---------SCCCBCTTCEEEEEEEEEE
T ss_pred CCcccEEEEEEEEeccccccCccccCCCCEEEEEEecCEEEEEEE-Ec---C---------CcccccCCCEEEEEEEECC
Confidence 67789999999999874 57999999999999999999987 31 1 2478999999999999999
Q ss_pred eEEeeecCCCCCceeEEEEeC
Q psy10357 232 VICLDQFKLFPQMGRFTLRDE 252 (252)
Q Consensus 232 ~i~~~~~~~~~~lgrfilrd~ 252 (252)
|+|++.+ +||+|||.
T Consensus 359 p~~~~~~------~r~~lr~~ 373 (397)
T 1d2e_A 359 PMILEKG------QRFTLRDG 373 (397)
T ss_dssp EECCCTT------CEEEEEET
T ss_pred eEEEccC------CeEEEEeC
Confidence 9999986 59999973
No 12
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=7.7e-34 Score=254.59 Aligned_cols=217 Identities=16% Similarity=0.238 Sum_probs=177.9
Q ss_pred HHHHHHhcccccccccCceeEEEe--ccccc---CCcccCCCCCCcCCCCccCchHHhhccCCCCCCC-CCCCeeEEEee
Q psy10357 5 VKYAVSFWQPKLWTVRQEILLIIS--PSGQM---GQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRK-MDGPFLMPVVE 78 (252)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~ip--iS~~~---G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~-~~~p~~~~I~~ 78 (252)
+..+++++++..+. +.+|++| +||++ |+|+.++. ..|.+.+.....+... ...|+|++|++
T Consensus 133 ~~~~i~~~l~~~~~---~~~~ii~~~~SA~~~~~g~gi~~L~----------~~l~~~~~~~~~~~~~~~~~p~r~~v~~ 199 (370)
T 2elf_A 133 LKAKLKVITSGTVL---QDWECISLNTNKSAKNPFEGVDELK----------ARINEVAEKIEAENAELNSLPARIFIDH 199 (370)
T ss_dssp HHHHHHHHTTTSTT---TTCEEEECCCCTTSSSTTTTHHHHH----------HHHHHHHHHHHHHHHHGGGSCCEEEEEE
T ss_pred HHHHHHHHHHhcCC---CceEEEecccccccCcCCCCHHHHH----------HHHHhhccccccCCccccccccccccee
Confidence 45677777776653 5679999 99999 88886531 0122222221111122 45678999999
Q ss_pred EEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCC
Q psy10357 79 KFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNP 156 (252)
Q Consensus 79 ~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 156 (252)
+|+ |.|++++|+|.+|.+++||+|.++|.+...+|++|+++++++++|.|||+|++.|++++..++++||+|++ .+
T Consensus 200 vf~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~--~~ 277 (370)
T 2elf_A 200 AFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD--KE 277 (370)
T ss_dssp EECCC---CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEETTEEESEEETTCEEEEEEESCCGGGCCTTCEEES--CC
T ss_pred EEEcCCCceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEECCCCccEEcCCCcceEEEeccCHHHcCCceEEEC--CC
Confidence 997 88999999999999999999999999999999999999999999999999999999998899999999998 55
Q ss_pred cceecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEee
Q psy10357 157 ARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLD 236 (252)
Q Consensus 157 ~~~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~ 236 (252)
..++.|+|++.|++++.++.+|+++.+|+|+.+++|+|..+.. |.+ ++ +.+.+||.+.|+|++++|+|++
T Consensus 278 -~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~v~~l~~--d~~-~~------~~~~~g~~~~v~l~~~~pi~~~ 347 (370)
T 2elf_A 278 -IVTTDYTLECTVSKFTKKIEPASVLHLFVGLQSEPVRVEKILV--DGN-EV------EEAKPGSTCVLELSGNKKLAYS 347 (370)
T ss_dssp -EEEEEEEEEEEECTTSCCBCTTCEEEEEETTEEEEEEEEEEEE--TTE-EE------SCBCTTCEEEEEEEEEEEEEEC
T ss_pred -ceeEEEEEEEEEECCCCCCCCCCEEEEEEcCCEEEEEEEEEEe--CCC-cc------eeecCCCEEEEEEEECcEEEEe
Confidence 8899999999999988889999999999999999999998753 332 21 2356899999999999999999
Q ss_pred ecCCCCCceeEEEEeC
Q psy10357 237 QFKLFPQMGRFTLRDE 252 (252)
Q Consensus 237 ~~~~~~~lgrfilrd~ 252 (252)
.|+ ||+|||.
T Consensus 348 ~~~------rfilr~~ 357 (370)
T 2elf_A 348 KQD------RFLLANL 357 (370)
T ss_dssp TTS------CEEEECT
T ss_pred CCC------EEEEEEC
Confidence 987 9999984
No 13
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=2.6e-35 Score=272.61 Aligned_cols=222 Identities=17% Similarity=0.194 Sum_probs=192.3
Q ss_pred hhHHHHHHhccccc-ccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CCCC--CCCCCCCeeEEEee
Q psy10357 3 ESVKYAVSFWQPKL-WTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LPSL--NRKMDGPFLMPVVE 78 (252)
Q Consensus 3 ~~~~~~~~~~l~~~-~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~~--~~~~~~p~~~~I~~ 78 (252)
+.+..++..+++.. ++ .+++++|+||++|+|+.+ |++.|.. ++.| .++.+.||+|+|++
T Consensus 144 ~~~~~~l~~~l~~~~~~---~~~~ii~vSA~~g~gI~~--------------L~~~L~~~i~~~~~~~~~~~~~~~~v~~ 206 (482)
T 1wb1_A 144 KRTEMIMKSILQSTHNL---KNSSIIPISAKTGFGVDE--------------LKNLIITTLNNAEIIRNTESYFKMPLDH 206 (482)
T ss_dssp HHHHHHHHHHHHHSSSG---GGCCEEECCTTTCTTHHH--------------HHHHHHHHHHHSCCCCCSSSCCBCBCSC
T ss_pred HHHHHHHHHHHhhhccc---ccceEEEEECcCCCCHHH--------------HHHHHHHhhcCcccccccccccccccee
Confidence 34556677777666 44 367999999999999976 4555544 3333 66778899999999
Q ss_pred EEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEE-eCCCC
Q psy10357 79 KFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVL-CDPNN 155 (252)
Q Consensus 79 ~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl-~~~~~ 155 (252)
+|+ |.|++++|+|.+|.+++||.|.++|.+..++|++|+.+++++++|.|||+|++.+++++..++++||+| ++++
T Consensus 207 v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~~~~- 285 (482)
T 1wb1_A 207 AFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKDT- 285 (482)
T ss_dssp EECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCCSSCBCCCTTC-
T ss_pred EEEecCCceEEEEEEEEeEEeeCCEEEECCCCcEEEEeEEEECCeEeeEecCCCEEEEEecCCCHhhccccceEecCCC-
Confidence 996 899999999999999999999999999999999999999999999999999999999988999999999 5554
Q ss_pred CcceecEEEEEEEEecc-CCcCCCCCEEEEEEEeeEEEEEEEEEE-EeecccCCcccccCCceecCCCEEEEEEEeCceE
Q psy10357 156 PARTARVFDAQIVILEH-KSIICAGYSAVMHIHCVAEEVNVKALI-CLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVI 233 (252)
Q Consensus 156 ~~~~~~~f~a~i~~~~~-~~~i~~g~~~~l~~~~~~~~~~i~~i~-~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i 233 (252)
++..++.|+|++.|+++ +.++.+|+++++|+|+.+++|+|..+. +++|.+++... +++|++||.+.|+|++++|+
T Consensus 286 ~~~~~~~~~a~v~~l~~~~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~~---~~~l~~g~~~~v~l~~~~pv 362 (482)
T 1wb1_A 286 KLQTVDKIVAKIKISDIFKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENII---LNEVISGNEXYXAFELEEKV 362 (482)
T ss_dssp CCCCEEEEEECCCCCSSCCSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEEE---CCSSCCSSCCCEEEEEEEEE
T ss_pred CCceeeEEEEEEEEeccCCcccCCCCEEEEEEcccEEEEEEEEEecccccccccccc---chhhcCCCEEEEEEEcCccE
Confidence 56788999999999986 578999999999999999999999998 78888776433 37899999999999999999
Q ss_pred EeeecCCCCCceeEEEEe
Q psy10357 234 CLDQFKLFPQMGRFTLRD 251 (252)
Q Consensus 234 ~~~~~~~~~~lgrfilrd 251 (252)
|++.+ +||+|||
T Consensus 363 ~~~~~------~rfilr~ 374 (482)
T 1wb1_A 363 LAEVG------DRVLITR 374 (482)
T ss_dssp CCCSS------CCCBEEC
T ss_pred EecCC------CeEEEEE
Confidence 99865 6999998
No 14
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=5.5e-33 Score=273.70 Aligned_cols=221 Identities=22% Similarity=0.326 Sum_probs=193.0
Q ss_pred hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCcc-CchHHhhcc-CCCCCCCCCCCeeEEEeeEEc
Q psy10357 4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKG-GAFIPFIDA-LPSLNRKMDGPFLMPVVEKFK 81 (252)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g-~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~~ 81 (252)
.++.++..+++++++ .++++|++|+||++|+|- .++||.| ..|++.|.. ++.|.+..+.||+|+|+++|+
T Consensus 433 ~i~eEi~elLk~~G~-~~~~vp~IpvSAktG~ng-------~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~ 504 (1289)
T 3avx_A 433 LVEMEVRELLSQYDF-PGDDTPIVRGSALKALEG-------DAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFS 504 (1289)
T ss_dssp HHHHHHHHHHHHTTS-CTTTCCEEECCSTTTTTC-------CHHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEE
T ss_pred HHHHHHHHHHHhccc-cccceeEEEEEeccCCCC-------CccccccchhhHhHHhhhcCCCccccccceeeecccccc
Confidence 356678888888775 456789999999999652 2468876 567777765 788888888999999999996
Q ss_pred --CCCeEEEEEEEEeeeecCCEEEEecCC--ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCc
Q psy10357 82 --DMGTVVMGKVESGEAKKGQSLVLMPNR--TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPA 157 (252)
Q Consensus 82 --g~G~vv~G~v~~G~l~~gd~v~i~p~~--~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~ 157 (252)
|.|++++|+|.+|+|++||.|.++|.+ +.++|++|+++++++++|.|||+|++.|+|++..++++||+|++++. +
T Consensus 505 i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~~-~ 583 (1289)
T 3avx_A 505 ISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGT-I 583 (1289)
T ss_dssp ETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEECSSCEESEEETTCEEEEEESSCCGGGCCTTCEEESTTS-C
T ss_pred ccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEeecCceeeEEecCCcceeEeeecchhcCCcccEEecCCC-C
Confidence 899999999999999999999999998 78999999999999999999999999999999999999999999886 5
Q ss_pred ceecEEEEEEEEeccC-----CcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCce
Q psy10357 158 RTARVFDAQIVILEHK-----SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGV 232 (252)
Q Consensus 158 ~~~~~f~a~i~~~~~~-----~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~ 232 (252)
.++..|+|++.|++++ .++.+|+.+.+|+++.+++|+|. +. + .+++|++||.+.|+|++.+|
T Consensus 584 ~~~~~F~A~V~~L~~~egg~~~pi~~G~~p~l~igT~~vtg~I~-L~---~---------~~~~L~~Gd~a~V~L~l~~P 650 (1289)
T 3avx_A 584 KPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIE-LP---E---------GVEMVMPGDNIKMVVTLIHP 650 (1289)
T ss_dssp CEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEECSSCEEEEEEE-CC---T---------TCCCBCTTCCCEEEEEEEEE
T ss_pred ccceeEEEEEEEEccccccccccccCCCceEEEEeeeeEEEEEE-EC---C---------CcccccCCCEEEEEEEECce
Confidence 7789999999999853 57999999999999999999986 31 1 24789999999999999999
Q ss_pred EEeeecCCCCCceeEEEEeC
Q psy10357 233 ICLDQFKLFPQMGRFTLRDE 252 (252)
Q Consensus 233 i~~~~~~~~~~lgrfilrd~ 252 (252)
+|++.+ +||+|||.
T Consensus 651 i~ve~g------~RFiLRd~ 664 (1289)
T 3avx_A 651 IAMDDG------LRFAIREG 664 (1289)
T ss_dssp EECCTT------CEEEEEET
T ss_pred EEEccC------CEEEEEeC
Confidence 999986 59999983
No 15
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.98 E-value=1.8e-31 Score=242.28 Aligned_cols=202 Identities=17% Similarity=0.190 Sum_probs=170.0
Q ss_pred HHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CCCCCCCCCCCeeEEEeeEEc--
Q psy10357 5 VKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LPSLNRKMDGPFLMPVVEKFK-- 81 (252)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~~-- 81 (252)
...++..+++... ..+++++|+||++|+|+.+ |++.|.. ++.|.++.+.||+|+|+++|+
T Consensus 156 ~~~~i~~~l~~~~---~~~~~~i~vSA~~g~gi~~--------------L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v~ 218 (408)
T 1s0u_A 156 NYEQIKEFVKGTI---AENAPIIPISAHHEANIDV--------------LLKAIQDFIPTPKRDPDATPRMYVARSFDIN 218 (408)
T ss_dssp HHHHHHHHHTTST---TTTCCEEEC------CHHH--------------HHHHHHHHSCCCCCCTTSCCEEEEEEEECCC
T ss_pred HHHHHHHHHhhcC---CCCCeEEEeeCCCCCCHHH--------------HHHHHHHhCCCCcccCCCCeEEEEEEEEeec
Confidence 4566777776554 2567999999999999965 6777765 888888889999999999984
Q ss_pred C--------CCeEEEEEEEEeeeecCCEEEEecCCc------------eEEEEEEEeCCccceeecCCCeEEEEEe---e
Q psy10357 82 D--------MGTVVMGKVESGEAKKGQSLVLMPNRT------------PVIVDQLWSDDEEVSSVGPGENIKVKLK---G 138 (252)
Q Consensus 82 g--------~G~vv~G~v~~G~l~~gd~v~i~p~~~------------~~~V~sI~~~~~~v~~a~aG~~v~l~l~---~ 138 (252)
+ .|++++|+|.+|.|++||.|.++|+++ .++|++|+++++++++|.|||+|++.++ +
T Consensus 219 ~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~~~~~~~ 298 (408)
T 1s0u_A 219 KPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPY 298 (408)
T ss_dssp CSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEETTEEESEECSSSCEEEECSSCGG
T ss_pred CCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEECCEEcCEEeCCCeEEEEeccCcc
Confidence 2 688999999999999999999999742 6899999999999999999999999987 6
Q ss_pred eCCCCccceeEEeCCCCCcceecEEEEEEEEeccC---------CcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcc
Q psy10357 139 IEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHK---------SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEK 209 (252)
Q Consensus 139 ~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~---------~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~ 209 (252)
++..++.+|++||+++.++..++.|+|++.|+++. .++.+|+++.+|+|+.++.|+|..+..
T Consensus 299 ~~~~~~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~--------- 369 (408)
T 1s0u_A 299 LTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEPLRTGEVLMLNIGTATTAGVITSARG--------- 369 (408)
T ss_dssp GTGGGTTTTCEEESTTCSCCEEEEEEEEEEECCCCSSCSSTTCCCCCCTTCEEEEEETTEEEEEEEEEEET---------
T ss_pred cchhhccceeEEECCCCCCceeEEEEEEEEEEeccccccccccccCCCCCCEEEEEEcCCEEEEEEEEecC---------
Confidence 77789999999999998888889999999999884 789999999999999999999987521
Q ss_pred cccCCceecCCCEEEEEEEeCceEEeeecCCCCCceeEEEEe
Q psy10357 210 SKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRD 251 (252)
Q Consensus 210 ~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~lgrfilrd 251 (252)
+ .++|++++|+|++.++ ||+||+
T Consensus 370 -----------~--~~~~~~~~p~~~~~~~------~~~~~~ 392 (408)
T 1s0u_A 370 -----------D--IADIKLKLPICAEIGD------RVAISR 392 (408)
T ss_dssp -----------T--EEEEEEEEEEECCTTC------EEEEEE
T ss_pred -----------C--EEEEEECCcEEecCCC------EEEEEE
Confidence 2 6788889999999987 999987
No 16
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.97 E-value=1.7e-30 Score=235.84 Aligned_cols=202 Identities=18% Similarity=0.220 Sum_probs=174.5
Q ss_pred HHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CCCCCCCCCCCeeEEEeeEEc--
Q psy10357 5 VKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LPSLNRKMDGPFLMPVVEKFK-- 81 (252)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~~-- 81 (252)
...++..+++... ..+++++|+||++|+|+.+ |++.|.. ++.|.++.+.||+|+|+++|+
T Consensus 158 ~~~~i~~~l~~~~---~~~~~~i~vSA~~g~gi~~--------------L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~ 220 (410)
T 1kk1_A 158 NYRQIKEFIEGTV---AENAPIIPISALHGANIDV--------------LVKAIEDFIPTPKRDPNKPPKMLVLRSFDVN 220 (410)
T ss_dssp HHHHHHHHHTTST---TTTCCEEECBTTTTBSHHH--------------HHHHHHHHSCCCCCCTTSCCEEEEEEEECCS
T ss_pred HHHHHHHHHHhcC---cCCCeEEEeeCCCCCCHHH--------------HHHHHHHhCCCCccccCCCcEEEEEEEEecc
Confidence 4456666666543 2567999999999999965 6777765 888888889999999999984
Q ss_pred C--------CCeEEEEEEEEeeeecCCEEEEecCCc------------eEEEEEEEeCCccceeecCCCeEEEEEe---e
Q psy10357 82 D--------MGTVVMGKVESGEAKKGQSLVLMPNRT------------PVIVDQLWSDDEEVSSVGPGENIKVKLK---G 138 (252)
Q Consensus 82 g--------~G~vv~G~v~~G~l~~gd~v~i~p~~~------------~~~V~sI~~~~~~v~~a~aG~~v~l~l~---~ 138 (252)
+ .|++++|+|.+|.|++||.|.++|+++ ..+|++|+.+++++++|.|||+|++.++ +
T Consensus 221 ~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~~~~~v~~a~aG~~v~~~~~~~~~ 300 (410)
T 1kk1_A 221 KPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPY 300 (410)
T ss_dssp CCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCGG
T ss_pred CCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEECCeEecEEcCCCEEEEEEecCcc
Confidence 2 688999999999999999999999753 6899999999999999999999999987 4
Q ss_pred eCCCCccceeEEeCCCCCcceecEEEEEEEEeccC---------CcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcc
Q psy10357 139 IEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHK---------SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEK 209 (252)
Q Consensus 139 ~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~---------~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~ 209 (252)
++..|+.+|++||+++.++..++.|+|++.|+++. .++.+|+++.+|+|+.+++|+|..+..
T Consensus 301 ~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~--------- 371 (410)
T 1kk1_A 301 LTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPIKRKEVLLLNVGTARTMGLVTGLGK--------- 371 (410)
T ss_dssp GTGGGTTTTCEEECTTCSCCEEEEEEEEEEECCCCC--CCCCSCCCCCTTCEEEEEETTEEEEEEEEEEET---------
T ss_pred cchhhccceeEEecCCCCCceeEEEEEEEEEEecccccccccccccCCCCCEEEEEEcCCEEeEEEEEecC---------
Confidence 66688999999999998888889999999999884 789999999999999999999987521
Q ss_pred cccCCceecCCCEEEEEEEeCceEEeeecCCCCCceeEEEEe
Q psy10357 210 SKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRD 251 (252)
Q Consensus 210 ~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~lgrfilrd 251 (252)
+ .++|++++|+|++.++ ||+||+
T Consensus 372 -----------~--~~~l~~~~p~~~~~~~------~~~~~~ 394 (410)
T 1kk1_A 372 -----------D--EIEVKLQIPVCAEPGD------RVAISR 394 (410)
T ss_dssp -----------T--EEEEEEEEEEECCTTC------EEEEEE
T ss_pred -----------C--EEEEEeCCcEEecCCC------EEEEEE
Confidence 2 6788889999999987 999987
No 17
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.97 E-value=1.7e-30 Score=235.46 Aligned_cols=201 Identities=17% Similarity=0.194 Sum_probs=172.7
Q ss_pred HHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CCCCCCCCCCCeeEEEeeEEc--
Q psy10357 5 VKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LPSLNRKMDGPFLMPVVEKFK-- 81 (252)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~~-- 81 (252)
.+.++..+++..+. ++++++|+||++|+|+.+ |++.|.. ++.|.++.+.||+|+|+++|.
T Consensus 150 ~~~~i~~~l~~~~~---~~~~ii~vSA~~g~gi~~--------------L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~ 212 (403)
T 3sjy_A 150 QYRQIKQFTKGTWA---ENVPIIPVSALHKINIDS--------------LIEGIEEYIKTPYRDLSQKPVMLVIRSFDVN 212 (403)
T ss_dssp HHHHHHHHHTTSTT---TTCCEEECBTTTTBSHHH--------------HHHHHHHHSCCCCCCTTSCCEEEEEEEECCC
T ss_pred HHHHHHHHHHhhCC---CCCEEEEEECCCCcChHH--------------HHHHHHHhCCCCCCCCCCCcEEEEEEEEeec
Confidence 44566666665553 678999999999999975 6777765 888888889999999999985
Q ss_pred C--------CCeEEEEEEEEeeeecCCEEEEecCCc------------eEEEEEEEeCCccceeecCCCeEEEEEe---e
Q psy10357 82 D--------MGTVVMGKVESGEAKKGQSLVLMPNRT------------PVIVDQLWSDDEEVSSVGPGENIKVKLK---G 138 (252)
Q Consensus 82 g--------~G~vv~G~v~~G~l~~gd~v~i~p~~~------------~~~V~sI~~~~~~v~~a~aG~~v~l~l~---~ 138 (252)
+ .|++++|+|.+|.+++||+|.++|+++ ..+|++|+++++++++|.|||+|+++|+ +
T Consensus 213 ~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~ 292 (403)
T 3sjy_A 213 KPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPS 292 (403)
T ss_dssp CTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCHH
T ss_pred CCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEECCEEcCEEeCCCEEEEEeccccc
Confidence 3 699999999999999999999999875 5899999999999999999999999987 6
Q ss_pred eCCCCccceeEEeCCCCCcceecEEEEEEEEecc---------CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcc
Q psy10357 139 IEEDDVSPGFVLCDPNNPARTARVFDAQIVILEH---------KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEK 209 (252)
Q Consensus 139 ~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~---------~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~ 209 (252)
++..|+.+|++||+++.++..++.|+|++.||++ +.++.+|+++.+|+|+.++.|+|..+. .
T Consensus 293 ~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~gt~~~~~~v~~~~----~----- 363 (403)
T 3sjy_A 293 LTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSVK----K----- 363 (403)
T ss_dssp HHGGGTTTTCEEEETTCCCCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTCEEEEEETTEEEEEEEEEEC----S-----
T ss_pred cchhhhccccEEeCCCCCCcceeEEEEEEEEEeccccccccccCCCCCCCCEEEEEECccEEEEEEEEec----C-----
Confidence 6778999999999999988889999999999986 578999999999999999999998651 1
Q ss_pred cccCCceecCCCEEEEEEEeCceEEeeecCCCCCceeEEE
Q psy10357 210 SKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTL 249 (252)
Q Consensus 210 ~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~lgrfil 249 (252)
+ .+++.|++|+|++..+ -||+|
T Consensus 364 -----------~--~~~~~l~~p~~~~~g~-----~r~~i 385 (403)
T 3sjy_A 364 -----------D--EIEVELRRPVAVWSNN-----IRTVI 385 (403)
T ss_dssp -----------S--EEEEEEEEEEECCSSS-----CEEEE
T ss_pred -----------c--eEEEEeCCcEeeccCC-----EEEEE
Confidence 1 5788889999988652 26776
No 18
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.41 E-value=6.3e-13 Score=125.29 Aligned_cols=118 Identities=18% Similarity=0.313 Sum_probs=100.1
Q ss_pred EEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCEE
Q psy10357 25 LIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSL 102 (252)
Q Consensus 25 ~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v 102 (252)
+++++||++|.|+.++ |...++.+|.|..+.+.||++.|.+++. +.|+++.|+|.+|++++||.|
T Consensus 159 ~vi~vSAktg~GI~~L-------------le~I~~~lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I 225 (600)
T 2ywe_A 159 EAILASAKEGIGIEEI-------------LEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKI 225 (600)
T ss_dssp GCEECBTTTTBSHHHH-------------HHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCEE
T ss_pred cEEEEEeecCCCchHH-------------HHHHHHhcccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCEE
Confidence 5899999999999764 4445677998888888999999988864 679999999999999999999
Q ss_pred EEecCCceEEEEEEEeCC---ccceeecCCCeEEEEEeee-CCCCccceeEEeCCCCC
Q psy10357 103 VLMPNRTPVIVDQLWSDD---EEVSSVGPGENIKVKLKGI-EEDDVSPGFVLCDPNNP 156 (252)
Q Consensus 103 ~i~p~~~~~~V~sI~~~~---~~v~~a~aG~~v~l~l~~~-~~~~i~~G~vl~~~~~~ 156 (252)
.++|.+...+|++|..+. .++++|.|||.+.+ +.|+ +..++++||+||+++.|
T Consensus 226 ~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdi~~v-~~gi~~~~~~~~GDtl~~~~~~ 282 (600)
T 2ywe_A 226 MLMSTGKEYEVTEVGAQTPKMTKFDKLSAGDVGYI-AASIKDVRDIRIGDTITHAKNP 282 (600)
T ss_dssp EETTTTEEEECCEEEEESSSEEEESCEETTCEEEE-ESSCCCTTSSCTTCEEEESSSC
T ss_pred EeccccceEeeecccccCCCceECCEEecCceeee-eccccchhhccCCCEEEeCCCc
Confidence 999999999999998754 57889999996555 3555 45789999999998765
No 19
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=99.36 E-value=7e-12 Score=92.28 Aligned_cols=80 Identities=23% Similarity=0.160 Sum_probs=69.9
Q ss_pred CCCeeEEEeeEEc-CCCeEEEEEEEEeeeecCCEEEEecCC-ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccc
Q psy10357 69 DGPFLMPVVEKFK-DMGTVVMGKVESGEAKKGQSLVLMPNR-TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSP 146 (252)
Q Consensus 69 ~~p~~~~I~~~~~-g~G~vv~G~v~~G~l~~gd~v~i~p~~-~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~ 146 (252)
..|..+.|-..+. -.|+++.|+|++|.|++|+.| |.+ ...+|+||+++++++++|.+||+|+++++|.+. ++++
T Consensus 32 ~~P~k~~ilp~~~~vFgpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~-~I~~ 107 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMGKDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIERNREKVEFAIAGDRIGISIEGKIG-KVKK 107 (116)
T ss_dssp SCSEEEEEEEEEEETTEEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEEETTEEESEEETTCEEEEEEESCCC-CCCT
T ss_pred cCcEEEEEEecCCeEECCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc-ccCC
Confidence 4577777776443 128899999999999999998 988 899999999999999999999999999998777 9999
Q ss_pred eeEEeC
Q psy10357 147 GFVLCD 152 (252)
Q Consensus 147 G~vl~~ 152 (252)
||+|..
T Consensus 108 GdVLyv 113 (116)
T 1xe1_A 108 GDVLEI 113 (116)
T ss_dssp TCEEEE
T ss_pred CcEEEE
Confidence 999864
No 20
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.32 E-value=4.4e-12 Score=119.62 Aligned_cols=118 Identities=17% Similarity=0.267 Sum_probs=99.2
Q ss_pred EEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCEE
Q psy10357 25 LIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSL 102 (252)
Q Consensus 25 ~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v 102 (252)
+++++||++|.|+.++ |...++.+|.|..+.+.||++.|.+++. +.|+++.|+|.+|+++.||.+
T Consensus 157 ~vi~vSAktg~GI~~L-------------l~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v 223 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDV-------------LERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKV 223 (599)
T ss_dssp TCEEECTTTCTTHHHH-------------HHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEE
T ss_pred eEEEeecccCCCchhH-------------HHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEE
Confidence 5899999999999763 3345577888888889999999998864 679999999999999999999
Q ss_pred EEecCCceEEEEEEEeCC---ccceeecCCCeEEEEEeee-CCCCccceeEEeCCCCC
Q psy10357 103 VLMPNRTPVIVDQLWSDD---EEVSSVGPGENIKVKLKGI-EEDDVSPGFVLCDPNNP 156 (252)
Q Consensus 103 ~i~p~~~~~~V~sI~~~~---~~v~~a~aG~~v~l~l~~~-~~~~i~~G~vl~~~~~~ 156 (252)
.+.|.+...+|.+|..++ .+++++.|||.+.+ +.++ +..++.+||+||++++|
T Consensus 224 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~aGdi~~~-~~gi~~~~~~~~GDtl~~~~~~ 280 (599)
T 3cb4_D 224 KVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWL-VCAIKDIHGAPVGDTLTLARNP 280 (599)
T ss_dssp EETTTCCEEECCEEEEESSSEEECSEECTTCEEEE-ECCCSSGGGSCTTCEEEESSSC
T ss_pred EeccccceeEEeeeeeccCCceECCEEcCCCeeEe-eccccccccCccCCEeeecCCc
Confidence 999999999999998753 57889999995544 5555 35689999999998764
No 21
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.25 E-value=4.4e-12 Score=118.12 Aligned_cols=119 Identities=20% Similarity=0.288 Sum_probs=92.7
Q ss_pred ceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecC
Q psy10357 22 EILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKG 99 (252)
Q Consensus 22 ~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~g 99 (252)
.+++++|+||++|+|+.++. . .|...++ ...+..+.+.|++++|+++|. |.|++++|+|.+|.+++|
T Consensus 140 ~~~~iv~vSAktG~GI~eLl-----e-----~I~~l~~-~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~G 208 (537)
T 3izy_P 140 GDVQAVHVSALTGENMMALA-----E-----ATIALAE-MLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKG 208 (537)
T ss_dssp SSEEECCCCSSSSCSSHHHH-----H-----HHHHHHT-TCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSE
T ss_pred CCceEEEEECCCCCCchhHH-----H-----HHHHhhh-cccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcC
Confidence 45799999999999997641 0 0222222 234455567899999999985 789999999999999999
Q ss_pred CEEEEecCCceEEEEEEEeCC-ccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCC
Q psy10357 100 QSLVLMPNRTPVIVDQLWSDD-EEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNP 156 (252)
Q Consensus 100 d~v~i~p~~~~~~V~sI~~~~-~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 156 (252)
|.+. +.....+|++|+.++ .++++|.||++|++ .|++ ....+||+++..+++
T Consensus 209 d~v~--~g~~~~kVr~i~~~~g~~v~~A~~G~~V~i--~g~~-~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 209 SILV--AGKSWAKVRLMFDENGRAVNEAYPSMPVGI--IGWR-DLPSAGDEILEVESE 261 (537)
T ss_dssp EEEC--CSSCCEEEEEEEECCCCCSCCSCCSTTCCC--CSSE-EEEEEESSCCSCCSS
T ss_pred CEEE--eCCceEEEEEEEcCCCCCCcEEcCCCEEEE--ECCC-CCCCCCCEEEecCCh
Confidence 9874 455678999999986 79999999999987 3544 235899999998653
No 22
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.22 E-value=2e-11 Score=113.80 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=93.0
Q ss_pred cCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhh-ccCCCCCCC---------CCCCeeEEEeeEEc-----CCC
Q psy10357 20 RQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFI-DALPSLNRK---------MDGPFLMPVVEKFK-----DMG 84 (252)
Q Consensus 20 ~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l-~~i~~~~~~---------~~~p~~~~I~~~~~-----g~G 84 (252)
....+|+++.||++|.|+.. |++.| +.+|+|... .+.||.+.|..+.. ..|
T Consensus 248 ~~~~~Pv~~gSA~~~~Gv~~--------------LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G 313 (529)
T 2h5e_A 248 AGEITPVFFGTALGNFGVDH--------------MLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRD 313 (529)
T ss_dssp TTSEEEEEECBTTTTBSHHH--------------HHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSC
T ss_pred hCceeEEEeeecccCCCHHH--------------HHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCc
Confidence 45678999999999999965 55654 557766421 14688888876632 469
Q ss_pred eEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357 85 TVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN 154 (252)
Q Consensus 85 ~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 154 (252)
++..|||.+|+++.||.|.+.+.++..+|.+|+.+ .+++++|.|||++++ . ...++..||+||+.+
T Consensus 314 ~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~--~l~~~~~Gdtl~~~~ 383 (529)
T 2h5e_A 314 RVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGL--H--NHGTIQIGDTFTQGE 383 (529)
T ss_dssp CCEEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEE--C--CSSCCCTTCEEESSC
T ss_pred eEEEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEE--e--ccCCCccCCEeecCC
Confidence 99999999999999999999999999999999975 578999999999977 3 345788899999876
No 23
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.20 E-value=5.7e-11 Score=110.68 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=95.3
Q ss_pred cCceeEEEecccccCCcccCCCCCCcCCCCccCchHH-hhccCCCCCCC---------CCCCeeEEEeeEEc-----CCC
Q psy10357 20 RQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIP-FIDALPSLNRK---------MDGPFLMPVVEKFK-----DMG 84 (252)
Q Consensus 20 ~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~-~l~~i~~~~~~---------~~~p~~~~I~~~~~-----g~G 84 (252)
....+|++++||++|.|+.+ |++ +++.+|.|... .+.||...|..+.. +.|
T Consensus 247 ~~~~~PV~~gSA~~~~GV~~--------------Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g 312 (528)
T 3tr5_A 247 KGELTPIFFGSAINNFGVGE--------------LLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRD 312 (528)
T ss_dssp TTSEEEEEECBGGGTBSHHH--------------HHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCC
T ss_pred cCceeEEEeccccCCccHHH--------------HHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCc
Confidence 46778999999999999976 455 44567776431 25789999988752 569
Q ss_pred eEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357 85 TVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN 154 (252)
Q Consensus 85 ~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 154 (252)
++..+||.+|+++.||.|...+.++..+|.++... .+++++|.|||++++ . +..++..||+||+.+
T Consensus 313 ~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~--~--~l~~~~~GDtl~~~~ 382 (528)
T 3tr5_A 313 RIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGL--H--NHGTIQIGDTFTQGE 382 (528)
T ss_dssp EEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEE--E--ESSSCCTTCEEESSC
T ss_pred eEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEE--c--CCCCCccCCEEcCCC
Confidence 99999999999999999999999999999999874 568999999999876 4 335788999999853
No 24
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.18 E-value=1.3e-10 Score=111.80 Aligned_cols=118 Identities=25% Similarity=0.347 Sum_probs=96.7
Q ss_pred CceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCC--------------------CCCCCeeEEEeeEE
Q psy10357 21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNR--------------------KMDGPFLMPVVEKF 80 (252)
Q Consensus 21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~--------------------~~~~p~~~~I~~~~ 80 (252)
.+-+|+++.||++|.|+..+ |..+++.+|+|.. +.+.||.+.|..++
T Consensus 259 ~~~~Pv~~gSa~~~~Gv~~L-------------Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~ 325 (704)
T 2rdo_7 259 NEIILVTCGSAFKNKGVQAM-------------LDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIA 325 (704)
T ss_pred CCeeEEEEeecccCccHHHH-------------HHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEEEE
Confidence 35579999999999998653 3335566877633 24679999999997
Q ss_pred c--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357 81 K--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN 154 (252)
Q Consensus 81 ~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 154 (252)
. +.|++..|||.+|+|+.||.|+..+.++..+|.+|... .+++++|.|||++++. |+ .++..||+||+.+
T Consensus 326 ~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~--gl--~~~~~GdTl~~~~ 401 (704)
T 2rdo_7 326 TDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAI--GL--KDVTTGDTLCDPD 401 (704)
T ss_pred EcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEe--Cc--ccCccCCEEeCCC
Confidence 4 67999999999999999999999999999999999764 4689999999999874 44 4678999999876
Q ss_pred C
Q psy10357 155 N 155 (252)
Q Consensus 155 ~ 155 (252)
.
T Consensus 402 ~ 402 (704)
T 2rdo_7 402 A 402 (704)
T ss_pred c
Confidence 4
No 25
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.16 E-value=1.5e-11 Score=117.70 Aligned_cols=115 Identities=25% Similarity=0.315 Sum_probs=94.5
Q ss_pred ceeEEEecccccCCcccCCCCCCcCCCCccCchHHh-hccCCCCCCC-CCCCeeEEEeeEEc--CCCeEEEEEEEEeeee
Q psy10357 22 EILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPF-IDALPSLNRK-MDGPFLMPVVEKFK--DMGTVVMGKVESGEAK 97 (252)
Q Consensus 22 ~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~-l~~i~~~~~~-~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~ 97 (252)
+-+|++++||++|.|+.. |++. ++.+|.|... .+.||.+.|..++. +.|++..|||.+|+|+
T Consensus 246 ~~~pv~~~SA~~~~Gv~~--------------Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~ 311 (665)
T 2dy1_A 246 LLYPVALASGEREIGVLP--------------LLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLK 311 (665)
T ss_dssp SCEEEEECBTTTTBSHHH--------------HHHHHHHHSCCHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEEC
T ss_pred CeeEEEEeecccCcCHHH--------------HHHHHHHhCCCccccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEe
Confidence 447999999999999876 4554 4668877543 67899999999974 6799999999999999
Q ss_pred cCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCC
Q psy10357 98 KGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNP 156 (252)
Q Consensus 98 ~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 156 (252)
.||.|...+ +..+|.+|... ..++++|.|||++++. ++ .++.+||+||+.+.+
T Consensus 312 ~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~--gl--~~~~~Gdtl~~~~~~ 368 (665)
T 2dy1_A 312 PGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVP--KA--EGLHRGMVLWQGEKP 368 (665)
T ss_dssp TTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEES--SC--TTCCTTCEEESSSCC
T ss_pred cCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEEe--CC--ccCccCCEEecCCCc
Confidence 999999877 77889888763 3589999999999873 44 478899999997654
No 26
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.12 E-value=2.4e-10 Score=109.71 Aligned_cols=117 Identities=21% Similarity=0.266 Sum_probs=96.5
Q ss_pred ceeEEEecccccCCcccCCCCCCcCCCCccCchHH-hhccCCCCCC------------------CCCCCeeEEEeeEEc-
Q psy10357 22 EILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIP-FIDALPSLNR------------------KMDGPFLMPVVEKFK- 81 (252)
Q Consensus 22 ~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~-~l~~i~~~~~------------------~~~~p~~~~I~~~~~- 81 (252)
.-+|+++.||++|.|+.. |++ +++.+|.|.. +.+.||.+.|..++.
T Consensus 254 ~~~Pv~~gSA~~~~Gv~~--------------LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d 319 (691)
T 1dar_A 254 KITPVFLGSALKNKGVQL--------------LLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMAD 319 (691)
T ss_dssp SCEEEEECBGGGTBSHHH--------------HHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEEEE
T ss_pred cEeEEEEeecccCcCHHH--------------HHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEEEc
Confidence 457999999999999865 455 5566887753 256799999999874
Q ss_pred -CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCC
Q psy10357 82 -DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNP 156 (252)
Q Consensus 82 -g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 156 (252)
+.|++..|||.+|+|+.||.|+..+.++..+|..|... ..++++|.|||.+++. |+ .++..||+||+.+.+
T Consensus 320 ~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl--~~~~~Gdtl~~~~~~ 395 (691)
T 1dar_A 320 PYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVV--GL--KETITGDTLVGEDAP 395 (691)
T ss_dssp TTTEEEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEE--CC--SSCCTTCEEEETTCC
T ss_pred CCCCcEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEe--Cc--ccCccCCEEecCCCc
Confidence 67999999999999999999999988888899888764 3588999999999874 55 467789999987654
No 27
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.10 E-value=3.2e-10 Score=104.73 Aligned_cols=114 Identities=19% Similarity=0.186 Sum_probs=89.8
Q ss_pred eeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc---CCCCCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeee
Q psy10357 23 ILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA---LPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAK 97 (252)
Q Consensus 23 ~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~---i~~~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~ 97 (252)
+++++|+||++|+|+.+ |++.|.. +..+..+.+.|+++.|.++|. |.|++++|+|.+|+++
T Consensus 140 ~~~~v~vSAktG~gI~e--------------Lle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk 205 (501)
T 1zo1_I 140 ESQFVHVSAKAGTGIDE--------------LLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLH 205 (501)
T ss_dssp SCEEEECCTTTCTTCTT--------------HHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCC
T ss_pred CccEEEEeeeeccCcch--------------hhhhhhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEe
Confidence 47999999999999976 4554432 223344567889999999985 7899999999999999
Q ss_pred cCCEEEEecCCceEEEEEEEe-CCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCC
Q psy10357 98 KGQSLVLMPNRTPVIVDQLWS-DDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNN 155 (252)
Q Consensus 98 ~gd~v~i~p~~~~~~V~sI~~-~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 155 (252)
+||.+.+.+ ...+|++|+. ++.++++|.||++|.+. |++. ....|++++...+
T Consensus 206 ~Gd~v~~g~--~~~kVr~i~~~~g~~v~~a~~g~~V~i~--gl~~-~~~~Gd~~~~~~~ 259 (501)
T 1zo1_I 206 KGDIVLCGF--EYGRVRAMRNELGQEVLEAGPSIPVEIL--GLSG-VPAAGDEVTVVRD 259 (501)
T ss_dssp TTCEEEEEB--SSCEEEEECCTTTTSEEEECCSSCSSSE--EECS-CCCTTEEEEEECS
T ss_pred cCCEEEEcc--ceeEEEEEEecCCCcCcEeccCCcEEEe--CCCC-CCCCCCEEEecCC
Confidence 999999865 5679999986 46799999999998764 5442 2468999976543
No 28
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.04 E-value=5.9e-10 Score=107.03 Aligned_cols=117 Identities=20% Similarity=0.270 Sum_probs=96.1
Q ss_pred CceeEEEecccccCCcccCCCCCCcCCCCccCchHH-hhccCCCCCC--------------------CCCCCeeEEEeeE
Q psy10357 21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIP-FIDALPSLNR--------------------KMDGPFLMPVVEK 79 (252)
Q Consensus 21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~-~l~~i~~~~~--------------------~~~~p~~~~I~~~ 79 (252)
..-+|+++.||++|.|+.. |++ +++.+|.|.. +.+.||.+.|..+
T Consensus 251 ~~~~Pv~~gSA~~~~Gv~~--------------LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~ 316 (693)
T 2xex_A 251 VEFYPVLCGTAFKNKGVQL--------------MLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKV 316 (693)
T ss_dssp TSCEEEEECBTTTTBSHHH--------------HHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEE
T ss_pred CCeeeEEEeecccCcCHHH--------------HHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEe
Confidence 3457999999999999865 455 5566887743 2567999999998
Q ss_pred Ec--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCC----ccceeecCCCeEEEEEeeeCCCCccceeEEeCC
Q psy10357 80 FK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDD----EEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDP 153 (252)
Q Consensus 80 ~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 153 (252)
+. ..|++..|||.+|+|+.||+|.....++..+|..|...+ .++++|.|||++++. |+ .++..||+||+.
T Consensus 317 ~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl--~~~~~GdTl~~~ 392 (693)
T 2xex_A 317 MTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAV--GL--KDTGTGDTLCGE 392 (693)
T ss_dssp EEETTTEEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEE--SC--SSCCTTCEEEET
T ss_pred eecCCCceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEEe--Cc--ccCccCCEEecC
Confidence 74 579999999999999999999998888889999997653 588999999999874 54 467889999987
Q ss_pred CC
Q psy10357 154 NN 155 (252)
Q Consensus 154 ~~ 155 (252)
+.
T Consensus 393 ~~ 394 (693)
T 2xex_A 393 KN 394 (693)
T ss_dssp TC
T ss_pred CC
Confidence 64
No 29
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.96 E-value=9.3e-10 Score=103.79 Aligned_cols=117 Identities=20% Similarity=0.250 Sum_probs=88.1
Q ss_pred CceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CCC-----CCCCCCCCeeEEEeeEEc--CCCeEEEEEEE
Q psy10357 21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LPS-----LNRKMDGPFLMPVVEKFK--DMGTVVMGKVE 92 (252)
Q Consensus 21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~-----~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~ 92 (252)
...+|++|+||++|+|+.++ ++.|.. ++. ...+.+.|+++.|.+++. |.|++++|+|.
T Consensus 189 ~~~vpvv~vSA~tG~GI~eL--------------l~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~ 254 (594)
T 1g7s_A 189 ASQVSIIPISAITGEGIPEL--------------LTMLMGLAQQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIY 254 (594)
T ss_dssp TTEEEEEECCTTTCTTHHHH--------------HHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEE
T ss_pred cCcceEEEEeccCCCCchhH--------------HHHHHhhccccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEe
Confidence 35789999999999999764 333322 211 122457899999999974 78999999999
Q ss_pred EeeeecCCEEEEecCCc--eEEEEEEEeC------------Cccceeec--CCCeEEEEEeeeCCCCccceeEEeCCCC
Q psy10357 93 SGEAKKGQSLVLMPNRT--PVIVDQLWSD------------DEEVSSVG--PGENIKVKLKGIEEDDVSPGFVLCDPNN 155 (252)
Q Consensus 93 ~G~l~~gd~v~i~p~~~--~~~V~sI~~~------------~~~v~~a~--aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 155 (252)
+|+|++||.|.+.|.+. .++|++|... ..++++|. +|+.+++ . ...++..||.|+..++
T Consensus 255 ~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~--~--~l~~~~~Gd~l~~~~~ 329 (594)
T 1g7s_A 255 DGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVA--P--GIDDVMAGSPLRVVTD 329 (594)
T ss_dssp ESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEEC--S--SCTTBCTTCEEEECSS
T ss_pred eCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEE--c--ccCCCCCCCEEEecCC
Confidence 99999999999999886 4599999753 34677887 6666543 3 3346788999998764
No 30
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.88 E-value=7.8e-09 Score=96.70 Aligned_cols=120 Identities=15% Similarity=0.130 Sum_probs=94.5
Q ss_pred cCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCC---------CCCCCeeEEEeeEEc-----CCCe
Q psy10357 20 RQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNR---------KMDGPFLMPVVEKFK-----DMGT 85 (252)
Q Consensus 20 ~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~---------~~~~p~~~~I~~~~~-----g~G~ 85 (252)
..+-+|++..||++|.|+..+ |...++.+|.|.. +.+.||...|..++. ..|+
T Consensus 265 ~g~~~PV~~gSA~~~~Gv~~L-------------Ld~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Gr 331 (548)
T 3vqt_A 265 KGELTPVFFGSAINNFGVREM-------------LDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDR 331 (548)
T ss_dssp TTSEEEEEECBGGGTBSHHHH-------------HHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------C
T ss_pred hCCcceeeecccccCcCHHHH-------------HHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCe
Confidence 356789999999999999763 3345677888742 246789888877653 3689
Q ss_pred EEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCC----ccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCC
Q psy10357 86 VVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDD----EEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNP 156 (252)
Q Consensus 86 vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 156 (252)
+..+||.+|+|+.||.|+....++..+|..+.... .++++|.|||++++ . ...++..||+||+.+.+
T Consensus 332 la~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai--~--gl~~~~~GDTl~~~~~~ 402 (548)
T 3vqt_A 332 MAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGI--P--NHGTIKIGDTFTESKEV 402 (548)
T ss_dssp EEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEE--E--CSSCCCTTCEEESSSSC
T ss_pred EEEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEe--c--CCccCccCCEecCCCCc
Confidence 99999999999999999999989999998887753 58999999999976 4 44578899999998653
No 31
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.65 E-value=2.1e-08 Score=96.52 Aligned_cols=119 Identities=24% Similarity=0.307 Sum_probs=95.1
Q ss_pred CceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCC--------------------CCCCCCeeEEEeeEE
Q psy10357 21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLN--------------------RKMDGPFLMPVVEKF 80 (252)
Q Consensus 21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~--------------------~~~~~p~~~~I~~~~ 80 (252)
.+-+|.+..||+++.|+..+ |...++.+|.|. .+.+.||.+.|..++
T Consensus 262 ~~~~pv~~gsa~~~~gv~~l-------------Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~ 328 (709)
T 4fn5_A 262 CEIVPAVCGSSFKNKGVPLV-------------LDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIA 328 (709)
T ss_dssp TSCEEEEECBTTTTBTHHHH-------------HHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECC
T ss_pred ceeeeeeeeecccCCchHHH-------------HHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEEee
Confidence 45679999999999998653 334567788773 345689999998886
Q ss_pred c--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357 81 K--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN 154 (252)
Q Consensus 81 ~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 154 (252)
. ..|.+..|||.+|+|+.||+|+....++..+|..+... ..++++|.|||.+++ .|+ .++..|++||+.+
T Consensus 329 ~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i--~Gl--~~~~~gdTl~~~~ 404 (709)
T 4fn5_A 329 TDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAAL--IGM--KDVTTGDTLCSIE 404 (709)
T ss_dssp CBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEE--CSC--SSCCTTCEEECSS
T ss_pred cccCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCeeee--cCC--CcCccCCEecCCC
Confidence 4 56899999999999999999998877777788887664 368999999999976 555 4788999999876
Q ss_pred CC
Q psy10357 155 NP 156 (252)
Q Consensus 155 ~~ 156 (252)
.+
T Consensus 405 ~~ 406 (709)
T 4fn5_A 405 KP 406 (709)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 32
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.10 E-value=5.7e-08 Score=92.45 Aligned_cols=114 Identities=11% Similarity=0.106 Sum_probs=88.9
Q ss_pred ceeEEEecccccCCcccCCCCCCcCCCCccCchHH-hhccCCCCCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeec
Q psy10357 22 EILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIP-FIDALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKK 98 (252)
Q Consensus 22 ~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~-~l~~i~~~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~ 98 (252)
.-+|++..||++|.|+.. |++ +++.+|.|....+.||.+.|..++. ..|++..+||.+|+++.
T Consensus 211 ~~~Pv~~gSa~~~~Gv~~--------------LLd~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~ 276 (638)
T 3j25_A 211 SLFPLYHGSAKSNIGIDN--------------LIEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHL 276 (638)
T ss_dssp SCCCCCCCCSTTCCSHHH--------------HHHHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCS
T ss_pred ccccccccccccCCCchh--------------HhhhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccC
Confidence 446899999999999965 455 4577898887788999999998864 57899999999999999
Q ss_pred CCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCCC
Q psy10357 99 GQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNN 155 (252)
Q Consensus 99 gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 155 (252)
||.|.+...+ ..+|..+... ..++++|.|||.+++ .+ .++..|+++++...
T Consensus 277 g~~v~~~~~~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i--~g---~~~~~~~tl~d~~~ 331 (638)
T 3j25_A 277 RDSVRVSEKE-KIKVTEMYTSINGELCKIDRAYSGEIVIL--QN---EFLKLNSVLGDTKL 331 (638)
T ss_dssp CCCSSSCCCC-CSSBCCCCSSCCCCBSCCCTTBCCCCSCC--CS---SSCSSEECSSSSSS
T ss_pred CCccccccCc-ceeEEeeecccccccccccccccceEEEE--ec---cccccCceecCCCC
Confidence 9999876544 3455555443 357899999999875 32 46778999888754
No 33
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=97.82 E-value=3.2e-05 Score=55.18 Aligned_cols=78 Identities=22% Similarity=0.301 Sum_probs=67.7
Q ss_pred eEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCc---eEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccce
Q psy10357 73 LMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRT---PVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPG 147 (252)
Q Consensus 73 ~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~---~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G 147 (252)
++-|-++|+ ..|++...+|.+|.++.+..+.++-.+. ..++.|+..+.++++++.+|.-++|.+. +..|++.|
T Consensus 8 ~AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~--~~~dik~G 85 (99)
T 1d1n_A 8 QAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIK--NFNDIKEG 85 (99)
T ss_dssp EEEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECT--TCSSCSSC
T ss_pred EEEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEc--CcCCCCCC
Confidence 456777886 4689999999999999999999999985 4589999999999999999999999998 55699999
Q ss_pred eEEeC
Q psy10357 148 FVLCD 152 (252)
Q Consensus 148 ~vl~~ 152 (252)
|+|=.
T Consensus 86 D~Ie~ 90 (99)
T 1d1n_A 86 DVIEA 90 (99)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 99843
No 34
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.74 E-value=0.00012 Score=53.99 Aligned_cols=79 Identities=18% Similarity=0.279 Sum_probs=68.0
Q ss_pred eEEEeeEEc--CCCe---EEEEEEEEeeeecCCEEEEecCCce---EEEEEEEeCCccceeecCCCeEEEEEeeeCCC-C
Q psy10357 73 LMPVVEKFK--DMGT---VVMGKVESGEAKKGQSLVLMPNRTP---VIVDQLWSDDEEVSSVGPGENIKVKLKGIEED-D 143 (252)
Q Consensus 73 ~~~I~~~~~--g~G~---vv~G~v~~G~l~~gd~v~i~p~~~~---~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~-~ 143 (252)
++-|-++|+ ..|+ +.-++|..|.++.+..+.++-.+.. .++.|+..+.++++++.+|.-++|.|. +.. |
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi~l~--~fniD 89 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLD--EEKVE 89 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEEECS--CTTSC
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEEEEc--cCCCC
Confidence 567788886 4576 8888999999999999999998854 489999999999999999999999998 556 9
Q ss_pred ccceeEEeCC
Q psy10357 144 VSPGFVLCDP 153 (252)
Q Consensus 144 i~~G~vl~~~ 153 (252)
++.||+|=.-
T Consensus 90 ik~GDiIE~y 99 (120)
T 2crv_A 90 FKPGDQVICY 99 (120)
T ss_dssp CCTTEEEEEE
T ss_pred CCCCCEEEEE
Confidence 9999998544
No 35
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.71 E-value=0.00015 Score=70.99 Aligned_cols=86 Identities=19% Similarity=0.269 Sum_probs=65.0
Q ss_pred CCCCCeeEEEeeEEc--CCCe-EEEEEEEEeeeecCCEEEEecCC------c---eEEEEEEEeC----CccceeecCCC
Q psy10357 67 KMDGPFLMPVVEKFK--DMGT-VVMGKVESGEAKKGQSLVLMPNR------T---PVIVDQLWSD----DEEVSSVGPGE 130 (252)
Q Consensus 67 ~~~~p~~~~I~~~~~--g~G~-vv~G~v~~G~l~~gd~v~i~p~~------~---~~~V~sI~~~----~~~v~~a~aG~ 130 (252)
+.+.||.+.|..++. ..|. +..+||.+|+|+.||.|.++..+ + ..+|..|... ..++++|.|||
T Consensus 373 ~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGd 452 (842)
T 1n0u_A 373 DPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGN 452 (842)
T ss_dssp CTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTC
T ss_pred CCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCC
Confidence 456899999998864 5786 89999999999999999876332 2 5788888765 35899999999
Q ss_pred eEEEEEeeeCCCCccceeEEeCCCC
Q psy10357 131 NIKVKLKGIEEDDVSPGFVLCDPNN 155 (252)
Q Consensus 131 ~v~l~l~~~~~~~i~~G~vl~~~~~ 155 (252)
++++ .|++...+..| +||+.+.
T Consensus 453 I~ai--~gl~~~~~~t~-Tl~~~~~ 474 (842)
T 1n0u_A 453 IIGL--VGIDQFLLKTG-TLTTSET 474 (842)
T ss_dssp EEEE--ESCTTTCCSSE-EEESCTT
T ss_pred EEEE--Eccccceecce-eecCCCC
Confidence 9876 55543333445 9998654
No 36
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.55 E-value=0.00034 Score=64.53 Aligned_cols=94 Identities=20% Similarity=0.214 Sum_probs=74.5
Q ss_pred hccCCCCCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCc---eEEEEEEEeCCccceeecCCCeE
Q psy10357 58 IDALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRT---PVIVDQLWSDDEEVSSVGPGENI 132 (252)
Q Consensus 58 l~~i~~~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~---~~~V~sI~~~~~~v~~a~aG~~v 132 (252)
+...-.|.....---.+-|-.+|+ ..|.++.++|..|.++.|..+.+...+. ..+|.||+.+.++++++..|+-|
T Consensus 395 ~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e~~~g~ec 474 (501)
T 1zo1_I 395 MSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMEC 474 (501)
T ss_dssp HTTTSSTTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESEEETTCCE
T ss_pred HHhhcCceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCccccEECCCCEE
Confidence 443333333333334566778886 4599999999999999999999988774 67999999999999999999999
Q ss_pred EEEEeeeCCCCccceeEEeCC
Q psy10357 133 KVKLKGIEEDDVSPGFVLCDP 153 (252)
Q Consensus 133 ~l~l~~~~~~~i~~G~vl~~~ 153 (252)
++.+.+ ..|++.||+|-.-
T Consensus 475 gi~~~~--~~~~~~gd~~~~~ 493 (501)
T 1zo1_I 475 GIGVKN--YNDVRTGDVIEVF 493 (501)
T ss_dssp EEEBCC--CTTCCTTCEEEEC
T ss_pred EEEEcC--cCCCCCCCEEEEE
Confidence 999984 4599999998654
No 37
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.07 E-value=0.0039 Score=58.62 Aligned_cols=82 Identities=17% Similarity=0.241 Sum_probs=67.6
Q ss_pred CeeEEEe--eEEc-CCCeEEEEEEEEeeeecCCEEEEecCC-ceEEEEEEEeCCccceeecCCCeEEEEEeeeC-CCCcc
Q psy10357 71 PFLMPVV--EKFK-DMGTVVMGKVESGEAKKGQSLVLMPNR-TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIE-EDDVS 145 (252)
Q Consensus 71 p~~~~I~--~~~~-g~G~vv~G~v~~G~l~~gd~v~i~p~~-~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~-~~~i~ 145 (252)
|-.+-|- .+|+ ..|.++.++|..|.++.|..+.+ +.+ ...+|.||+.+.+++++|.+|+-|++.+.+.. ..+++
T Consensus 463 ~~~~~i~~~~~f~~~~~~i~g~~v~~G~~~~~~~~~~-~~~~~~g~i~sl~~~k~~v~~~~~g~e~gi~~~~~~~~~~~~ 541 (594)
T 1g7s_A 463 PASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLMN-DDGETVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGKTIH 541 (594)
T ss_dssp CEEEEEEEEEEEECSSSEEEEEEEEEEEEETTCEEEC-TTSCEEEEEEEEEETTEEESEEETTCCEEEEEETCCBTTTBC
T ss_pred eEEEEEecceEEcCCCCeEEEEEEecCEEecCCeEEe-cCCcEEEEEehhcccCccccccCCCCEEEEEEeCcccCCCCC
Confidence 4455554 6886 55888888999999999999998 555 56799999999999999999999999998532 26899
Q ss_pred ceeEEeCC
Q psy10357 146 PGFVLCDP 153 (252)
Q Consensus 146 ~G~vl~~~ 153 (252)
.||+|-..
T Consensus 542 ~~d~~~~~ 549 (594)
T 1g7s_A 542 EGDTLYVD 549 (594)
T ss_dssp TTCEEEEC
T ss_pred CCCEEEEE
Confidence 99998654
No 38
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.96 E-value=0.0025 Score=59.15 Aligned_cols=94 Identities=15% Similarity=0.110 Sum_probs=74.6
Q ss_pred hhccCCCCCCCCCCCeeEEEeeEEc---C--CCeEEEEEEEEeeeecCCEEEEecCCc---eEEEEEEEeCCccceeecC
Q psy10357 57 FIDALPSLNRKMDGPFLMPVVEKFK---D--MGTVVMGKVESGEAKKGQSLVLMPNRT---PVIVDQLWSDDEEVSSVGP 128 (252)
Q Consensus 57 ~l~~i~~~~~~~~~p~~~~I~~~~~---g--~G~vv~G~v~~G~l~~gd~v~i~p~~~---~~~V~sI~~~~~~v~~a~a 128 (252)
++...-.|.....-.-++-|-.+|+ | .|++..++|..|.++.|..+.++..+. ..++.|+..+.++++++..
T Consensus 433 ~~~~~l~~~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk~~k~~v~ev~~ 512 (537)
T 3izy_P 433 ELSSRLPCIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLKHHKDDTSVVKT 512 (537)
T ss_dssp HHSSSSSCSSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCCCSSCCCSEEET
T ss_pred HHHhccCCceEEEEEEEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhcccCcccceEcC
Confidence 4444334443334446788888885 3 578999999999999999999999885 4588888889999999999
Q ss_pred CCeEEEEEeeeCCCCccceeEEe
Q psy10357 129 GENIKVKLKGIEEDDVSPGFVLC 151 (252)
Q Consensus 129 G~~v~l~l~~~~~~~i~~G~vl~ 151 (252)
|.-|++.+.+ ...|++.||+|-
T Consensus 513 g~ecgi~~~~-~~~~~~~gd~ie 534 (537)
T 3izy_P 513 GMDCGLSLDE-EKIEFKVGDAII 534 (537)
T ss_dssp TCEEEEESSS-SCSSCSCCCEEE
T ss_pred CCEEEEEEcC-cccCCCCCCEEE
Confidence 9999999985 145999999873
No 39
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=91.95 E-value=0.15 Score=35.30 Aligned_cols=55 Identities=18% Similarity=0.423 Sum_probs=41.0
Q ss_pred EEeeeecCCEEEE-ecCC--ceEEEEEEEe-CCccceee-cCCCeEEEEEeeeCCCCccceeEE
Q psy10357 92 ESGEAKKGQSLVL-MPNR--TPVIVDQLWS-DDEEVSSV-GPGENIKVKLKGIEEDDVSPGFVL 150 (252)
Q Consensus 92 ~~G~l~~gd~v~i-~p~~--~~~~V~sI~~-~~~~v~~a-~aG~~v~l~l~~~~~~~i~~G~vl 150 (252)
....+.+||.|.+ .|.+ ...+|..|.. .+++++.| ++|+.|.|.+. ..+..|++|
T Consensus 26 ~rN~f~~GD~iEi~~P~g~~~~~~v~~m~d~~G~~i~~A~~~~~~v~i~~~----~~~~~~dil 85 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEIENFTQVIEKIWDEDGNELDAARHPLQIVKFKVK----RPLFPYNMM 85 (89)
T ss_dssp ESSCBCTTCEEEEESTTSCCEEEECCCEEETTSCEESCBCSTTCEEEEECS----SCCCTTCEE
T ss_pred EcCCcCCCCEEEEEcCCCCcEEEEeHHeEcCCCCEeeEcCCCCeEEEEECC----CCCCCCCEE
Confidence 3678999999985 4665 4567778874 56789998 99999988654 356667765
No 40
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=56.99 E-value=72 Score=26.92 Aligned_cols=91 Identities=20% Similarity=0.216 Sum_probs=56.8
Q ss_pred CCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceecEEEEEEEEeccCCcCCC
Q psy10357 99 GQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHKSIICA 178 (252)
Q Consensus 99 gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~i~~ 178 (252)
|+.+..........| .+......+.....|+.+.+.+.+. ..-..|.+..-....-..+..|.+++.+-+....+++
T Consensus 196 g~~l~~i~~~~~l~v-~~~v~e~~~~~i~~G~~v~v~~~~~--~~~~~g~v~~i~~~~d~~~~~~~v~~~~~~~~~~l~~ 272 (359)
T 3lnn_A 196 TASLMTVADLSHVFV-TANAQEKDLGHVYVGQSATVKFDAY--DDPQPGKVRYVGQILDADTRTTKVRMVFDNPDGRLRP 272 (359)
T ss_dssp SCCSEEEECCSEEEE-EEEECGGGSTTCCTTCEEEEBCSSC--SSCEEEEEEECCCCCCTTSCCEEEEEEEECSSCCCCT
T ss_pred CcceEEEecCCeEEE-EEEeCHHHHhhCCCCCeEEEEEcCC--CCcEEEEEEEEecccCCCCcEEEEEEEecCCCCCcCC
Confidence 444333333333333 3455667788899999999887643 2334676654333222345678888877766666999
Q ss_pred CCEEEEEEEeeEEE
Q psy10357 179 GYSAVMHIHCVAEE 192 (252)
Q Consensus 179 g~~~~l~~~~~~~~ 192 (252)
|....+.+......
T Consensus 273 G~~~~v~i~~~~~~ 286 (359)
T 3lnn_A 273 GMFAQATFLSQPHE 286 (359)
T ss_dssp TCEEEEEEECCCEE
T ss_pred CCEEEEEEecCCCC
Confidence 99998887766433
No 41
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=51.91 E-value=8.6 Score=34.32 Aligned_cols=18 Identities=11% Similarity=-0.005 Sum_probs=15.5
Q ss_pred eeEEEecccccCCcccCC
Q psy10357 23 ILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 23 ~~~~ipiS~~~G~ni~~~ 40 (252)
..+++++||++|+|+.++
T Consensus 342 ~~~~~~~SA~~g~gv~~l 359 (456)
T 4dcu_A 342 YAPILFMSALTKKRIHTL 359 (456)
T ss_dssp TSCEEECCTTTCTTGGGH
T ss_pred CCCEEEEcCCCCcCHHHH
Confidence 358999999999999764
No 42
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=50.95 E-value=3.9 Score=32.04 Aligned_cols=20 Identities=15% Similarity=0.027 Sum_probs=17.1
Q ss_pred CceeEEEecccccCCcccCC
Q psy10357 21 QEILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 21 ~~~~~~ipiS~~~G~ni~~~ 40 (252)
....+++++||++|+|+.++
T Consensus 182 ~~~~~~~~~SA~~g~gv~~l 201 (223)
T 4dhe_A 182 AGKLTVQLFSALKRTGLDDA 201 (223)
T ss_dssp CSCEEEEEEBTTTTBSHHHH
T ss_pred CCCCeEEEeecCCCcCHHHH
Confidence 35679999999999999764
No 43
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=48.45 E-value=6.6 Score=29.85 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=17.1
Q ss_pred CceeEEEecccccCCcccCC
Q psy10357 21 QEILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 21 ~~~~~~ipiS~~~G~ni~~~ 40 (252)
...++++++||++|+|+.+.
T Consensus 160 ~~~~~~~~~Sa~~g~gv~~l 179 (199)
T 4bas_A 160 DHPFVIFASNGLKGTGVHEG 179 (199)
T ss_dssp TSCEEEEECBTTTTBTHHHH
T ss_pred CCeeEEEEeeCCCccCHHHH
Confidence 46679999999999999764
No 44
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.81 E-value=56 Score=23.38 Aligned_cols=51 Identities=12% Similarity=0.197 Sum_probs=33.8
Q ss_pred CCeEEEEEEEEeeeecCCEEEEe-------cCC--ceEEEEEEEeCCccceeecCCCeEEEE
Q psy10357 83 MGTVVMGKVESGEAKKGQSLVLM-------PNR--TPVIVDQLWSDDEEVSSVGPGENIKVK 135 (252)
Q Consensus 83 ~G~vv~G~v~~G~l~~gd~v~i~-------p~~--~~~~V~sI~~~~~~v~~a~aG~~v~l~ 135 (252)
.|.++.|.|.|-.. .-++.+. |.- ...+-+.+..|+++..++..||.|.+.
T Consensus 30 rgr~l~G~VvS~KM--~KTivV~ve~~~~hpkY~K~~kr~kk~~aHDe~~n~~~vGD~V~I~ 89 (113)
T 3j20_R 30 HGRVFEGIVVSDKP--RKTVTVERQYYFYLNKYERYELRRSKIHAHNPPCINAKVGDKVLIA 89 (113)
T ss_dssp CSCEEEEEEEECCS--TTEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTSEEEEE
T ss_pred eeEEEEEEEEeccC--CceEEEEEEEEEEcCcccEEEECceEEEEECCCCCCCCCCCEEEEE
Confidence 58888888888743 2344443 211 234666777788877789999998763
No 45
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=45.72 E-value=13 Score=32.99 Aligned_cols=18 Identities=11% Similarity=-0.005 Sum_probs=15.7
Q ss_pred eeEEEecccccCCcccCC
Q psy10357 23 ILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 23 ~~~~ipiS~~~G~ni~~~ 40 (252)
..|++++||++|+|+.++
T Consensus 322 ~~~~~~~SA~tg~~v~~l 339 (436)
T 2hjg_A 322 YAPILFMSALTKKRIHTL 339 (436)
T ss_dssp TSCEEECCTTTCTTGGGH
T ss_pred CCCEEEEecccCCCHHHH
Confidence 358999999999999765
No 46
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=44.96 E-value=12 Score=28.95 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=15.9
Q ss_pred ceeEEEecccccCCcccCC
Q psy10357 22 EILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 22 ~~~~~ipiS~~~G~ni~~~ 40 (252)
..++++++||++|.|+.+.
T Consensus 147 ~~~~~~~~Sa~~g~gv~~l 165 (218)
T 4djt_A 147 KNYEYFEISAKTAHNFGLP 165 (218)
T ss_dssp CCCEEEEEBTTTTBTTTHH
T ss_pred cCCcEEEEecCCCCCHHHH
Confidence 3458999999999999764
No 47
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=40.34 E-value=23 Score=31.06 Aligned_cols=70 Identities=6% Similarity=-0.001 Sum_probs=44.4
Q ss_pred EeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceecEEEEEEEEeccCCcCCCCCEEEEEEE
Q psy10357 117 WSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIH 187 (252)
Q Consensus 117 ~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~i~~g~~~~l~~~ 187 (252)
......+.....|+.+.+.+.+.... ...|.+..-....-..+..|.+++.+-+.+..+++|....+.+.
T Consensus 249 ~v~e~~~~~i~~G~~v~v~~~~~p~~-~~~G~V~~I~p~~d~~t~t~~v~i~l~n~~~~L~pGm~v~v~i~ 318 (413)
T 3ne5_B 249 AIPESIAWLVKDASQFTLTVPARPDK-TLTIRKWTLLPGVDAATRTLQLRLEVDNADEALKPGMNAWLQLN 318 (413)
T ss_dssp EEEGGGHHHHTTCCCEEEEETTEEEE-EEEECCCEECSCCBTTTTEEEEEEEEECTTCCSCTTCEEEEEEE
T ss_pred EECHHHHHhccCCCeEEEEEecCCCc-EEEEEEEEEeCccCCCCcEEEEEEEEECCCCccCCCCEEEEEEe
Confidence 33456677788999999987643221 12344322111112345678888887776667999999888776
No 48
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=39.56 E-value=7 Score=31.13 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=15.1
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
++|+.+||++|+|+.+.
T Consensus 150 ~~~~e~SAktg~nV~e~ 166 (216)
T 4dkx_A 150 VMFIETSAKAGYNVKQL 166 (216)
T ss_dssp CEEEEEBTTTTBSHHHH
T ss_pred CeeEEEeCCCCcCHHHH
Confidence 58999999999999874
No 49
>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q
Probab=37.76 E-value=60 Score=24.62 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=33.1
Q ss_pred CCeEEEEEEEEeeeecCCEEEEe-------cCC--ceEEEEEEEeCCccceeecCCCeEEEE
Q psy10357 83 MGTVVMGKVESGEAKKGQSLVLM-------PNR--TPVIVDQLWSDDEEVSSVGPGENIKVK 135 (252)
Q Consensus 83 ~G~vv~G~v~~G~l~~gd~v~i~-------p~~--~~~~V~sI~~~~~~v~~a~aG~~v~l~ 135 (252)
+|.+..|.|.|-.+ .-+|.+. |.- ...+-+.+..|+++.+++..||.|.|.
T Consensus 66 Rgr~l~G~VVS~KM--dKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDee~n~~kvGD~V~I~ 125 (157)
T 2xzm_Q 66 RGKIIKGLVISTKM--NRTVIIRRDYLHYVRKYNRYEKRHRNIPVHISPCFSVKEGDILVAG 125 (157)
T ss_dssp CSCEEEEEEEECCS--TTEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTCEEEEE
T ss_pred eeEEEEEEEEEecC--CccEEEEEEEEEecCccceEeecceeEEEECCCCCCCCCCCEEEEE
Confidence 58888899888643 2344443 211 223556667777777789999988763
No 50
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=37.57 E-value=5.7 Score=30.80 Aligned_cols=17 Identities=29% Similarity=0.202 Sum_probs=14.9
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
.+++++||++|+|+.++
T Consensus 154 ~~~~~~Sa~~g~gi~~l 170 (212)
T 2j0v_A 154 AAYIECSSKTQQNVKAV 170 (212)
T ss_dssp SEEEECCTTTCTTHHHH
T ss_pred ceEEEccCCCCCCHHHH
Confidence 48999999999999764
No 51
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=36.77 E-value=11 Score=28.84 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=14.9
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
++++++||++|+|+.++
T Consensus 151 ~~~~~~Sa~~g~gi~~l 167 (206)
T 2bov_A 151 VNYVETSAKTRANVDKV 167 (206)
T ss_dssp CEEEEECTTTCTTHHHH
T ss_pred CeEEEEeCCCCCCHHHH
Confidence 48999999999999764
No 52
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=36.26 E-value=9.3 Score=28.57 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=14.9
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
++++++||++|+|+.+.
T Consensus 140 ~~~~~~Sa~~g~gi~~l 156 (189)
T 4dsu_A 140 IPFIETSAKTRQGVDDA 156 (189)
T ss_dssp CCEEECCTTTCTTHHHH
T ss_pred CeEEEEeCCCCCCHHHH
Confidence 48999999999999764
No 53
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=35.68 E-value=13 Score=28.39 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=14.8
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
++++++||++|.|+.+.
T Consensus 145 ~~~~~~Sa~~~~gi~~l 161 (203)
T 1zbd_A 145 FEFFEASAKDNINVKQT 161 (203)
T ss_dssp CEEEECBTTTTBSSHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 48999999999999764
No 54
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=35.59 E-value=13 Score=28.47 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=15.0
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
++|+++||++|.|+.++
T Consensus 146 ~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 146 XKFIETSAAVQHNVKEL 162 (192)
T ss_dssp CEEEECBTTTTBSHHHH
T ss_pred CceEEeccccCCCHHHH
Confidence 58999999999999764
No 55
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=35.02 E-value=13 Score=27.92 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=14.9
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
++++++||++|+|+.++
T Consensus 152 ~~~~~~Sa~~~~gi~~l 168 (195)
T 1x3s_A 152 MLFIEASAKTCDGVQCA 168 (195)
T ss_dssp CEEEECCTTTCTTHHHH
T ss_pred CEEEEecCCCCCCHHHH
Confidence 58999999999999764
No 56
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=34.42 E-value=1.8e+02 Score=24.19 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=46.0
Q ss_pred EEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCC--CCCcceecEEEEEEEEeccCCcCCCCCEEEEEEEee
Q psy10357 116 LWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDP--NNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCV 189 (252)
Q Consensus 116 I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~--~~~~~~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~ 189 (252)
+......+.....|+.+.+.+.+.... ...|.+..-. .++......|.+++.+-+....+++|....+.+...
T Consensus 197 ~~v~e~~~~~v~~G~~v~v~~~~~~~~-~~~g~V~~i~~~~~~~~~~~~~~v~i~~~~~~~~l~~G~~~~v~i~~~ 271 (341)
T 3fpp_A 197 AQVSEADVIHLKPGQKAWFTVLGDQLT-RYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLT 271 (341)
T ss_dssp EECCGGGSTTCCTTCCCEECCSSSSSS-CBCCCEEEECSSCCBSSSCBCCEEEEEEECSSSCCCTTCEEEEEEESC
T ss_pred EEECHHHHhhCCCCCEEEEEEecCCCC-EEEEEEEEEecCccccCceEEEEEEEEeCCCccccCCCCEEEEEEEEc
Confidence 455667788899999998877643322 2356554221 122223345777777666666689999888877554
No 57
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=33.83 E-value=12 Score=30.65 Aligned_cols=17 Identities=6% Similarity=0.014 Sum_probs=15.0
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
+|++|+||++|.|+.++
T Consensus 141 ~~vi~~SA~~g~gi~el 157 (256)
T 3iby_A 141 CSVIPIQAHKNIGIPAL 157 (256)
T ss_dssp SCEEECBGGGTBSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 58999999999999763
No 58
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=32.86 E-value=13 Score=28.54 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.9
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
++++++||++|+|+.++
T Consensus 156 ~~~~~~Sa~~~~gi~~l 172 (213)
T 3cph_A 156 IPFIESSAKNDDNVNEI 172 (213)
T ss_dssp CCEEECBTTTTBSSHHH
T ss_pred CEEEEEeCCCCCCHHHH
Confidence 47999999999999764
No 59
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=32.76 E-value=16 Score=28.63 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=15.2
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
++++++||++|+|+.++
T Consensus 179 ~~~~~~SA~~g~gi~~l 195 (228)
T 2qu8_A 179 IKFSSFSTLTGVGVEQA 195 (228)
T ss_dssp EEEEECCTTTCTTHHHH
T ss_pred ceEEEEecccCCCHHHH
Confidence 68999999999999764
No 60
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomic protein structure initiative; 1.57A {Enterococcus faecalis} SCOP: b.161.1.1
Probab=32.49 E-value=57 Score=23.88 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=20.5
Q ss_pred EeeeecCCEEEEecCCceEEEEEEEe
Q psy10357 93 SGEAKKGQSLVLMPNRTPVIVDQLWS 118 (252)
Q Consensus 93 ~G~l~~gd~v~i~p~~~~~~V~sI~~ 118 (252)
+|.+++||++.+ .++..+|..+..
T Consensus 52 ~~~i~~Gd~l~i--~~~~Y~ItaVG~ 75 (129)
T 2f9h_A 52 QVTLAEGDHLKI--GDTNYTITKVGS 75 (129)
T ss_dssp GCCCCTTCEEEE--TTEEEEEEEECT
T ss_pred cCCcCCCCEEEE--CCEEEEEEEEhH
Confidence 488999999999 578999998864
No 61
>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q* 1s1h_Q
Probab=31.71 E-value=73 Score=24.11 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=29.2
Q ss_pred CeEEEEEEEEeeeecCCEEEEecCC---------ceEEEEEEEeCCccceeecCCCeEEEE
Q psy10357 84 GTVVMGKVESGEAKKGQSLVLMPNR---------TPVIVDQLWSDDEEVSSVGPGENIKVK 135 (252)
Q Consensus 84 G~vv~G~v~~G~l~~gd~v~i~p~~---------~~~~V~sI~~~~~~v~~a~aG~~v~l~ 135 (252)
|.++.|.|.|-.+ .-++.+.-.. ...+-+.+..|+++..++..||.|.|.
T Consensus 68 gr~l~G~VVS~KM--dKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~kvGD~V~I~ 126 (156)
T 3u5c_L 68 GKILTGTVVSTKM--HRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVG 126 (156)
T ss_dssp EEEEEEEEEECCS--TTEEEEEEEEEEEEGGGTEEEEEEEEEEEECCTTSCCCTTCEEEEE
T ss_pred eEEEEEEEEeecC--CCeEEEEEEEEeecCccceEEECceEEEEECCCcCcCCCCCEEEEE
Confidence 5566666665532 2344443111 233556667777777679999988763
No 62
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=31.03 E-value=15 Score=28.01 Aligned_cols=19 Identities=11% Similarity=0.156 Sum_probs=16.0
Q ss_pred ceeEEEecccccCCcccCC
Q psy10357 22 EILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 22 ~~~~~ipiS~~~G~ni~~~ 40 (252)
..++++++||++|+|+.++
T Consensus 147 ~~~~~~~~Sa~~g~gi~~l 165 (207)
T 1vg8_A 147 NNIPYFETSAKEAINVEQA 165 (207)
T ss_dssp TSCCEEECBTTTTBSHHHH
T ss_pred CCceEEEEeCCCCCCHHHH
Confidence 4568999999999999764
No 63
>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q
Probab=30.86 E-value=67 Score=24.41 Aligned_cols=50 Identities=14% Similarity=0.142 Sum_probs=28.2
Q ss_pred CCeEEEEEEEEeeeecCCEEEEe-------cCC--ceEEEEEEEeCCccce-eecCCCeEEE
Q psy10357 83 MGTVVMGKVESGEAKKGQSLVLM-------PNR--TPVIVDQLWSDDEEVS-SVGPGENIKV 134 (252)
Q Consensus 83 ~G~vv~G~v~~G~l~~gd~v~i~-------p~~--~~~~V~sI~~~~~~v~-~a~aG~~v~l 134 (252)
+|.++.|.|.|..+. -+|.+. |.- ...+-+.+..|+++.. ++..||.|.|
T Consensus 69 RGr~l~G~VVS~KMd--KTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~~kvGD~V~I 128 (158)
T 2zkq_q 69 RGRILSGVVTKMKMQ--RTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTV 128 (158)
T ss_dssp --CEEEEEEEECSSS--CEEEEEEEEECSSTTCCCEEEEEEEECCBCCSSCCCC-CCCEEEE
T ss_pred eeEEEEEEEEEccCC--ccEEEEEEEEEecCccceeeecceeEEEECCcccCcCCCCCEEEE
Confidence 478888888886533 244443 111 2234555666666655 7888998876
No 64
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=30.15 E-value=15 Score=28.41 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=14.8
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
++++++||++|+|+.++
T Consensus 173 ~~~~~~Sa~~g~gi~~l 189 (217)
T 2f7s_A 173 IPYFETSAATGQNVEKA 189 (217)
T ss_dssp CCEEEEBTTTTBTHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 57999999999999764
No 65
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=30.03 E-value=18 Score=30.38 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.4
Q ss_pred eeEEEecccccCCcccCC
Q psy10357 23 ILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 23 ~~~~ipiS~~~G~ni~~~ 40 (252)
..+++|+||++|+|+.++
T Consensus 155 ~~~i~~vSA~~g~gv~~L 172 (308)
T 3iev_A 155 LTEIVPISALKGANLDEL 172 (308)
T ss_dssp CCCEEECBTTTTBSHHHH
T ss_pred CCeEEEEeCCCCCCHHHH
Confidence 357999999999999764
No 66
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=29.82 E-value=15 Score=27.64 Aligned_cols=17 Identities=12% Similarity=0.315 Sum_probs=14.9
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
++++++||++|+|+.+.
T Consensus 153 ~~~~~~Sa~~g~gv~~l 169 (196)
T 3tkl_A 153 IPFLETSAKNATNVEQS 169 (196)
T ss_dssp CCEEEECTTTCTTHHHH
T ss_pred CcEEEEeCCCCCCHHHH
Confidence 58999999999999764
No 67
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=29.62 E-value=16 Score=26.96 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=15.3
Q ss_pred eeEEEecccccCCcccCC
Q psy10357 23 ILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 23 ~~~~ipiS~~~G~ni~~~ 40 (252)
.++++++||++|+|+.+.
T Consensus 144 ~~~~~~~Sa~~~~gi~~l 161 (181)
T 3tw8_B 144 GIQLFETSAKENVNVEEM 161 (181)
T ss_dssp TCCEEECBTTTTBSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 468999999999999763
No 68
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=29.50 E-value=16 Score=28.03 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=14.9
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
++++++||++|+|+.++
T Consensus 145 ~~~~~~Sa~~g~gi~~l 161 (206)
T 2bcg_Y 145 MPFLETSALDSTNVEDA 161 (206)
T ss_dssp CCEEECCTTTCTTHHHH
T ss_pred CeEEEEeCCCCCCHHHH
Confidence 58999999999999764
No 69
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=29.47 E-value=2e+02 Score=24.02 Aligned_cols=90 Identities=11% Similarity=0.033 Sum_probs=57.1
Q ss_pred CCccceeEEeCCCCCc---ceecEEEEEEEEecc-CCcCCCCCEEEEEEE--eeEEEEEEEEEEEeecccCCccc-----
Q psy10357 142 DDVSPGFVLCDPNNPA---RTARVFDAQIVILEH-KSIICAGYSAVMHIH--CVAEEVNVKALICLIDKKTGEKS----- 210 (252)
Q Consensus 142 ~~i~~G~vl~~~~~~~---~~~~~f~a~i~~~~~-~~~i~~g~~~~l~~~--~~~~~~~i~~i~~~~d~~tg~~~----- 210 (252)
..+..|+.+...+.+. ...+.+.+.+.+-.. -..+..|....+... .....++|..|....|..++...
T Consensus 184 ~~~~~G~~v~~~g~~l~~i~~~~~l~v~~~v~e~~~~~i~~G~~v~v~~~~~~~~~~g~v~~i~~~~d~~~~~~~v~~~~ 263 (359)
T 3lnn_A 184 LNAATGAYWNDTTASLMTVADLSHVFVTANAQEKDLGHVYVGQSATVKFDAYDDPQPGKVRYVGQILDADTRTTKVRMVF 263 (359)
T ss_dssp CCCCBTCEECCSSCCSEEEECCSEEEEEEEECGGGSTTCCTTCEEEEBCSSCSSCEEEEEEECCCCCCTTSCCEEEEEEE
T ss_pred eecCCCceeCCCCcceEEEecCCeEEEEEEeCHHHHhhCCCCCeEEEEEcCCCCcEEEEEEEEecccCCCCcEEEEEEEe
Confidence 4566788766534332 123456676666554 335899999888765 34567888887666665544211
Q ss_pred ccCCceecCCCEEEEEEEeCc
Q psy10357 211 KTRPRFVKQDQIAIMRLEAAG 231 (252)
Q Consensus 211 ~~~~~~l~~g~~~~v~l~l~~ 231 (252)
......|.+|+.+.+++....
T Consensus 264 ~~~~~~l~~G~~~~v~i~~~~ 284 (359)
T 3lnn_A 264 DNPDGRLRPGMFAQATFLSQP 284 (359)
T ss_dssp ECSSCCCCTTCEEEEEEECCC
T ss_pred cCCCCCcCCCCEEEEEEecCC
Confidence 112345999999999998754
No 70
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=29.40 E-value=17 Score=27.09 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=12.5
Q ss_pred eeEEEecccccCCcccCC
Q psy10357 23 ILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 23 ~~~~ipiS~~~G~ni~~~ 40 (252)
.++++++||++|+|+.+.
T Consensus 144 ~~~~~~~Sa~~~~~i~~l 161 (183)
T 2fu5_C 144 GIKFMETSAKANINVENA 161 (183)
T ss_dssp TCEEEECCC---CCHHHH
T ss_pred CCeEEEEeCCCCCCHHHH
Confidence 468999999999999764
No 71
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=29.33 E-value=19 Score=27.15 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=15.0
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
++++++||++|+|+.++
T Consensus 145 ~~~~~~Sa~~~~gi~~l 161 (199)
T 2gf0_A 145 CAFMETSAKMNYNVKEL 161 (199)
T ss_dssp CEEEECBTTTTBSHHHH
T ss_pred CeEEEEecCCCCCHHHH
Confidence 58999999999999764
No 72
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=28.88 E-value=19 Score=28.15 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.1
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
++++++||++|+|+.++
T Consensus 150 ~~~~~~Sa~~~~gi~~l 166 (223)
T 3cpj_B 150 LLFTETSALNSENVDKA 166 (223)
T ss_dssp CEEEECCCC-CCCHHHH
T ss_pred CEEEEEeCCCCCCHHHH
Confidence 58999999999999764
No 73
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=27.52 E-value=28 Score=31.08 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=16.9
Q ss_pred CceeEEEecccccCCcccCC
Q psy10357 21 QEILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 21 ~~~~~~ipiS~~~G~ni~~~ 40 (252)
...++++++||++|+|+.++
T Consensus 455 ~~~~~~~~~SA~~g~gi~~l 474 (497)
T 3lvq_E 455 DRNWYVQPSCATSGDGLYEG 474 (497)
T ss_dssp SSCEEEEECBTTTTBTHHHH
T ss_pred cCCeEEEEEECCCCCCHHHH
Confidence 45678999999999999764
No 74
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=27.50 E-value=21 Score=27.34 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=16.1
Q ss_pred ceeEEEecccccCCcccCC
Q psy10357 22 EILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 22 ~~~~~ipiS~~~G~ni~~~ 40 (252)
..++++++||++|+|+.+.
T Consensus 160 ~~~~~~~~SA~~g~gi~~l 178 (200)
T 2o52_A 160 NELMFLETSALTGENVEEA 178 (200)
T ss_dssp TTCEEEEECTTTCTTHHHH
T ss_pred cCCEEEEEeCCCCCCHHHH
Confidence 3578999999999999764
No 75
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=27.25 E-value=21 Score=27.02 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=9.1
Q ss_pred eEEEeccccc-CCcccCC
Q psy10357 24 LLIISPSGQM-GQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~-G~ni~~~ 40 (252)
++++++||++ |+|+.+.
T Consensus 165 ~~~~~~Sa~~~~~gi~~l 182 (208)
T 2yc2_C 165 LDFFDVSANPPGKDADAP 182 (208)
T ss_dssp CEEEECCC-------CHH
T ss_pred CEEEEeccCCCCcCHHHH
Confidence 5899999999 9999764
No 76
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=27.21 E-value=21 Score=26.49 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=16.0
Q ss_pred ceeEEEecccccCCcccCC
Q psy10357 22 EILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 22 ~~~~~ipiS~~~G~ni~~~ 40 (252)
..++++++||++|+|+.+.
T Consensus 145 ~~~~~~~~Sa~~~~gi~~l 163 (186)
T 2bme_A 145 NELMFLETSALTGENVEEA 163 (186)
T ss_dssp TTCEEEECCTTTCTTHHHH
T ss_pred cCCEEEEecCCCCCCHHHH
Confidence 3578999999999999764
No 77
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=26.46 E-value=19 Score=27.84 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=15.5
Q ss_pred eeEEEecccccCCcccCC
Q psy10357 23 ILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 23 ~~~~ipiS~~~G~ni~~~ 40 (252)
.++++++||++|+|+.++
T Consensus 162 ~~~~~~~Sa~~g~gv~~l 179 (201)
T 2ew1_A 162 DMYYLETSAKESDNVEKL 179 (201)
T ss_dssp TCCEEECCTTTCTTHHHH
T ss_pred CCEEEEEeCCCCCCHHHH
Confidence 468999999999999764
No 78
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=26.42 E-value=28 Score=30.67 Aligned_cols=17 Identities=24% Similarity=0.215 Sum_probs=14.8
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
.+++++||++|.|+.++
T Consensus 329 ~~~~~~SA~~g~gv~~l 345 (439)
T 1mky_A 329 SPLIFTSADKGWNIDRM 345 (439)
T ss_dssp SCEEECBTTTTBSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 58999999999998754
No 79
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=26.31 E-value=19 Score=29.77 Aligned_cols=17 Identities=6% Similarity=0.163 Sum_probs=15.0
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
+|++++||++|+|+.++
T Consensus 138 ~~vi~~SA~~g~gi~el 154 (272)
T 3b1v_A 138 VPVVATSALKQTGVDQV 154 (272)
T ss_dssp SCEEECBTTTTBSHHHH
T ss_pred CCEEEEEccCCCCHHHH
Confidence 58999999999999763
No 80
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=25.95 E-value=26 Score=27.16 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=15.5
Q ss_pred eeEEEecccccCCcccCC
Q psy10357 23 ILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 23 ~~~~ipiS~~~G~ni~~~ 40 (252)
.++++++||++|.|+.+.
T Consensus 148 ~~~~~~~Sa~~~~gi~~l 165 (221)
T 3gj0_A 148 NLQYYDISAKSNYNFEKP 165 (221)
T ss_dssp TCEEEECBGGGTBTTTHH
T ss_pred CCEEEEEeCCCCCCHHHH
Confidence 468999999999999764
No 81
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=25.70 E-value=1.5e+02 Score=19.81 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=29.4
Q ss_pred eeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEe
Q psy10357 95 EAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLK 137 (252)
Q Consensus 95 ~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~ 137 (252)
.+++||++.+.+.++..+|+=|.. +....+|.-+++.|.
T Consensus 5 ~i~vG~Rv~v~~~~~~G~VryvG~----v~~~~~G~wvGVelD 43 (84)
T 4b6m_A 5 TIHVGDRCLCRPGDRLGSVRFVGR----VASLKPGYWVGVEFD 43 (84)
T ss_dssp CCCTTCEEEETTTTEEEEEEEEEE----CTTSCSSEEEEEEES
T ss_pred CcccCCEEEEcCCCeEEEEEEEec----CCCCCCCEEEEEEEC
Confidence 478999999988888888888763 223346788888886
No 82
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=25.26 E-value=20 Score=29.25 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=15.0
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
+|++++||++|.|+.++
T Consensus 141 ~~vi~~SA~~g~gi~el 157 (258)
T 3a1s_A 141 IPVVFTSSVTGEGLEEL 157 (258)
T ss_dssp SCEEECCTTTCTTHHHH
T ss_pred CCEEEEEeeCCcCHHHH
Confidence 58999999999999764
No 83
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=24.42 E-value=28 Score=29.08 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=14.7
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
++++++||++|+|+.++
T Consensus 143 ~~~~~~SA~~g~gi~~L 159 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDEL 159 (302)
T ss_dssp CEEEECCTTTCTTHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 48999999999998654
No 84
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=23.94 E-value=21 Score=30.53 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=15.5
Q ss_pred eeEEEecccccCCcccCC
Q psy10357 23 ILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 23 ~~~~ipiS~~~G~ni~~~ 40 (252)
..|++++||++|+|+.++
T Consensus 257 ~~~vi~iSA~~g~Gi~~L 274 (355)
T 3p32_A 257 RPPVLTMSAVEGRGLAEL 274 (355)
T ss_dssp CCCEEEEBGGGTBSHHHH
T ss_pred CCceEEEEcCCCCCHHHH
Confidence 468999999999999764
No 85
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=23.72 E-value=26 Score=28.77 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=14.9
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
+|++++||++|+|+.++
T Consensus 143 ~~~i~~SA~~g~gi~el 159 (274)
T 3i8s_A 143 CPVIPLVSTRGRGIEAL 159 (274)
T ss_dssp SCEEECCCGGGHHHHHH
T ss_pred CCEEEEEcCCCCCHHHH
Confidence 58999999999999763
No 86
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=23.47 E-value=23 Score=26.29 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=15.2
Q ss_pred eeEEEecccccCCcccCC
Q psy10357 23 ILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 23 ~~~~ipiS~~~G~ni~~~ 40 (252)
.++++++||++|.|+.++
T Consensus 158 ~~~~~~~Sa~~~~~v~~l 175 (195)
T 3bc1_A 158 GIPYFETSAANGTNISHA 175 (195)
T ss_dssp TCCEEECCTTTCTTHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 568999999999998763
No 87
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=23.29 E-value=23 Score=26.44 Aligned_cols=17 Identities=12% Similarity=0.173 Sum_probs=15.0
Q ss_pred eEEEecccccCCcccCC
Q psy10357 24 LLIISPSGQMGQNLKEP 40 (252)
Q Consensus 24 ~~~ipiS~~~G~ni~~~ 40 (252)
++++++||++|+|+.++
T Consensus 143 ~~~~~~Sa~~~~~v~~l 159 (188)
T 2wjg_A 143 VKVVPLSAAKKMGIEEL 159 (188)
T ss_dssp SCEEECBGGGTBSHHHH
T ss_pred CCeEEEEecCCCCHHHH
Confidence 58999999999999764
No 88
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=21.95 E-value=16 Score=27.08 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=15.4
Q ss_pred eeEEEecccccCCcccCC
Q psy10357 23 ILLIISPSGQMGQNLKEP 40 (252)
Q Consensus 23 ~~~~ipiS~~~G~ni~~~ 40 (252)
.++++++||++|+|+.+.
T Consensus 142 ~~~~~~~Sa~~~~~v~~l 159 (181)
T 3t5g_A 142 NAAFLESSAKENQTAVDV 159 (181)
T ss_dssp TCEEEECCTTSHHHHHHH
T ss_pred CCcEEEEecCCCCCHHHH
Confidence 468999999999998764
No 89
>3ld7_A LIN0431 protein; DUF1312, PF07009, LKR112, NESG, structural genomics, PSI-2, protein structure initiative; 1.55A {Listeria innocua}
Probab=20.54 E-value=36 Score=23.75 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=21.0
Q ss_pred EEEeeee-cCCEEEEecCCceEEEEEE
Q psy10357 91 VESGEAK-KGQSLVLMPNRTPVIVDQL 116 (252)
Q Consensus 91 v~~G~l~-~gd~v~i~p~~~~~~V~sI 116 (252)
+.+|+|. .||.+..+|.+..++|.+=
T Consensus 65 v~~GwIs~~Gq~IVCLPnklvI~I~~~ 91 (101)
T 3ld7_A 65 VKMGWKSKAGDTIVCLPHKVFVEIKST 91 (101)
T ss_dssp HHHCCBCSTTCEEEETTTTEEEEEEEC
T ss_pred ccCCCcCCCCCEEEEcCCEEEEEEEeC
Confidence 4567776 7999999999988888763
Done!