RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10357
(252 letters)
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase,
alpha/beta structure, protein biosynthesis, translation;
HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Length = 435
Score = 275 bits (705), Expect = 2e-91
Identities = 66/225 (29%), Positives = 121/225 (53%), Gaps = 4/225 (1%)
Query: 30 SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK--DMGTVV 87
G N+ E W+ G ++D L + +D P +P+ + + +GTV
Sbjct: 193 VAPSGDNITHK--SENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYSISGVGTVP 250
Query: 88 MGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPG 147
+G+VESG K G +V MP V + + ++ PG+NI ++G+E+ D+ G
Sbjct: 251 VGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRG 310
Query: 148 FVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTG 207
V+ PNNP A F A+I+++ H + + GY+ V+H+H + V L+ +D +TG
Sbjct: 311 DVVGHPNNPPTVADEFTARIIVVWHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTG 370
Query: 208 EKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
++++ P+F+KQ +AI++ + +C++++ FP +GRF +RD
Sbjct: 371 QEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDM 415
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A;
translation termination, peptide release, PTC, P
biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo
sapiens}
Length = 204
Score = 252 bits (647), Expect = 1e-85
Identities = 121/184 (65%), Positives = 147/184 (79%)
Query: 69 DGPFLMPVVEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGP 128
P +P+V+K+KDMGTVV+GK+ESG KGQ LV+MPN+ V V + SDD E +V P
Sbjct: 4 GSPIRLPIVDKYKDMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAP 63
Query: 129 GENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHC 188
GEN+K++LKGIEE+++ PGF+LCDPNN + R FDAQIVI+EHKSIIC GY+AV+HIH
Sbjct: 64 GENLKIRLKGIEEEEILPGFILCDPNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHT 123
Query: 189 VAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFT 248
EEV + ALICL+DKK+GEKSKTRPRFVKQDQ+ I RL AG ICL+ FK FPQMGRFT
Sbjct: 124 CIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFT 183
Query: 249 LRDE 252
LRDE
Sbjct: 184 LRDE 187
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit;
translation termination, peptide release, GTPase,
translatio; 2.35A {Schizosaccharomyces pombe} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Length = 467
Score = 261 bits (668), Expect = 2e-85
Identities = 87/224 (38%), Positives = 138/224 (61%), Gaps = 3/224 (1%)
Query: 30 SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMG 89
S GQN+K+ V +C W++G + + ++D++ L RK++ PF+MP+ K+KD+GT++ G
Sbjct: 232 SAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIASKYKDLGTILEG 291
Query: 90 KVESGEAKKGQSLVLMPNRTPVIVDQLWSD-DEEVSSVGPGENIKVKLKGIEEDDVSPGF 148
K+E+G KK ++++MP + V ++ + DEE+SS G+ ++++++G + DV G+
Sbjct: 292 KIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRGDDS-DVQTGY 350
Query: 149 VLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGE 208
VL NP F AQI ILE SI+ GYS VMHIH EEV+ L+ +D KT
Sbjct: 351 VLTSTKNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLD-KTNR 409
Query: 209 KSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
KSK P F + I LE +C+++F+ + MGRFTLRD+
Sbjct: 410 KSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQ 453
>1f60_A Elongation factor EEF1A; protein-protein complex, translation;
1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1
c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Length = 458
Score = 246 bits (629), Expect = 1e-79
Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 17/238 (7%)
Query: 30 SGQMGQNLKEPVGPEICTWWKGGA------------FIPFIDALPSLNRKMDGPFLMPVV 77
SG G N+ E W+KG + IDA+ +R D P +P+
Sbjct: 192 SGWNGDNMIEAT--TNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPTDKPLRLPLQ 249
Query: 78 EKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVK 135
+ +K +GTV +G+VE+G K G + P V + E++ PG+N+
Sbjct: 250 DVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFN 309
Query: 136 LKGIEEDDVSPGFVLCDP-NNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVN 194
+K + ++ G V D N+P + F+A +++L H I AGYS V+ H
Sbjct: 310 VKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIACR 369
Query: 195 VKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
L+ D+++G+K + P+F+K A+++ + +C++ F +P +GRF +RD
Sbjct: 370 FDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDM 427
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural
genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 243 bits (623), Expect = 2e-78
Identities = 54/247 (21%), Positives = 99/247 (40%), Gaps = 25/247 (10%)
Query: 30 SGQMGQNL-KEPVGPEICTWWKGGAFIPFIDAL------PSLNRKMDGPFLMPV-----V 77
SG G+ + K E+ W+ G + ++ + D PFL V
Sbjct: 218 SGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEIIPS 277
Query: 78 EKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQL--------WSDDEEVSSVGPG 129
+K + +V GK+ESG + G+SL + P+ IVD++ ++ EE G
Sbjct: 278 KKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKG 337
Query: 130 ENIKVKLKGIEEDDVSPGFVLCDP-NNPARTARVFDAQIVILEHKSIICAGYSAVMHIHC 188
+ + +KL+ +D+ G + + +A+ F ++ + + G ++ I
Sbjct: 338 DFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGV 397
Query: 189 VAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRL---EAAGVICLDQFKLFPQMG 245
+ +K LI IDK K + R + Q A + + E I L ++G
Sbjct: 398 KEQPARIKRLISFIDKGNTASKK-KIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLG 456
Query: 246 RFTLRDE 252
R LR +
Sbjct: 457 RVVLRKD 463
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 245 bits (628), Expect = 5e-78
Identities = 55/247 (22%), Positives = 100/247 (40%), Gaps = 25/247 (10%)
Query: 30 SGQMGQNL-KEPVGPEICTWWKGGAFIPFIDAL------PSLNRKMDGPFLMPV-----V 77
SG G+ + K E+ W+ G + ++ + D PFL V
Sbjct: 352 SGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEIIPS 411
Query: 78 EKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQL--------WSDDEEVSSVGPG 129
+K + +V GK+ESG + G+SL + P+ IVD++ ++ EE G
Sbjct: 412 KKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKG 471
Query: 130 ENIKVKLKGIEEDDVSPGFVLCDP-NNPARTARVFDAQIVILEHKSIICAGYSAVMHIHC 188
+ + +KL+ +D+ G + + +A+ F ++ + + G ++ I
Sbjct: 472 DFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGV 531
Query: 189 VAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRL---EAAGVICLDQFKLFPQMG 245
+ +K LI IDK SK + R + Q A + + E I L ++G
Sbjct: 532 KEQPARIKRLISFIDKGNT-ASKKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLG 590
Query: 246 RFTLRDE 252
R LR +
Sbjct: 591 RVVLRKD 597
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 243 bits (622), Expect = 3e-77
Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 12/226 (5%)
Query: 30 SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTV-VM 88
S G NL + ++ W+KG + +D L + P + + + ++ +V V
Sbjct: 363 SAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTVT 422
Query: 89 GKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVG-PGENIKVKLKGIEEDDVSPG 147
G+VE+G + Q L + ++ V + + + S+ G+ + ++L IE + + PG
Sbjct: 423 GRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPG 482
Query: 148 FVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTG 207
+L + NP R R F A+I + I +G + V+H+ V++ K
Sbjct: 483 DILSNYENPVRRVRSFVAEIQTFDIHGPILSGSTLVLHLGRTVTSVSL---------KIV 533
Query: 208 EKSKTRPRFVKQDQIAIMRLE-AAGVICLDQFKLFPQMGRFTLRDE 252
+ R R + + A++R+ G+ L + P +GRF LR
Sbjct: 534 TVNNKRSRHIASRKRALVRISFLDGLFPLCLAEECPALGRFILRRS 579
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 88.5 bits (220), Expect = 2e-20
Identities = 38/207 (18%), Positives = 88/207 (42%), Gaps = 7/207 (3%)
Query: 48 WWKGGAFIPFIDALPSLNRKMDGPFLMPV--VEKFKDMGTVVMGKVESGEAKKGQSLVLM 105
W+ G + + ++ + + + PV V + G + SG KG +V++
Sbjct: 220 WYAGQSLMEILETVEIASDRNYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVL 279
Query: 106 PNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDA 165
P+ V + + + E+ GPG+ + + ++ +E D+S G +L +N + + FDA
Sbjct: 280 PSGKSSRVKSIVTFEGELEQAGPGQAVTLTME--DEIDISRGDLLVHADNVPQVSDAFDA 337
Query: 166 QIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIM 225
+V + + ++ G + ++ ++ +D T E+ ++ ++I +
Sbjct: 338 MLVWMAEEPML-PGKKYDIKRATSYVPGSIASITHRVDVNTLEEGP--ASSLQLNEIGRV 394
Query: 226 RLEAAGVICLDQFKLFPQMGRFTLRDE 252
++ I LD + G F + D
Sbjct: 395 KVSLDAPIALDGYSSNRTTGAFIVIDR 421
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 74.4 bits (183), Expect = 2e-15
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
Query: 62 PSLNRKMDGPFLMPVVEKF--KDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD 119
+ R + F MP+ F K GTVV G + G K G L ++P V +
Sbjct: 190 AEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYF 249
Query: 120 DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVIL 170
E V G+ + + ++G++ + G +L + +T A+I I
Sbjct: 250 KESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKDTKLQTVDKIVAKIKIS 300
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 73.0 bits (180), Expect = 3e-15
Identities = 22/115 (19%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 59 DALPSLNRKMD-GPFLMPVVEKF--KDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQ 115
+ + + N +++ P + + F G VV+G V+ G +K + P + +
Sbjct: 179 EKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRS 238
Query: 116 LWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVIL 170
+ S D ++ S G + ++LK ++ D+ GF++ D T + +
Sbjct: 239 IQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISDKEI-VTTDYTLECTVSKF 292
Score = 27.5 bits (62), Expect = 3.8
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 113 VDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPG--FVLCDPNNPARTA 160
V+++ D EV PG ++L G ++ S F+L + + R A
Sbjct: 315 VEKILVDGNEVEEAKPGSTCVLELSGNKKLAYSKQDRFLLANLDLTQRFA 364
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 57.6 bits (139), Expect = 1e-09
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 19/121 (15%)
Query: 61 LPSLNRKMDGPFLMPVVEKF--KDMGTVVMGKVESGEAKKGQS--LV-LMPNRTPVIVD- 114
+P R +D PFL+P+ + F GTVV G+VE G K G+ +V + +
Sbjct: 484 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGV 543
Query: 115 -----QLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVI 169
L DE + GEN+ V L+GI+ +++ G VL P + F++++ I
Sbjct: 544 EMFRKLL---DEGRA----GENVGVLLRGIKREEIERGQVLAKPGT-IKPHTKFESEVYI 595
Query: 170 L 170
L
Sbjct: 596 L 596
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 56.1 bits (136), Expect = 2e-09
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 61 LPSLNRKMDGPFLMPVVEKF--KDMGTVVMGKVESGEAKKGQSLVLM----PNRTPV--- 111
+P R ++ PFL+PV + GTVV G +E G KKG + RT V
Sbjct: 193 IPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGI 252
Query: 112 -----IVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQ 166
+D+ + G+N+ ++G++ +D+ G V+ P + + + +AQ
Sbjct: 253 EMFHKSLDRAEA----------GDNLGALVRGLKREDLRRGLVMAKPGS-IQPHQKVEAQ 301
Query: 167 IVIL 170
+ IL
Sbjct: 302 VYIL 305
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 54.9 bits (133), Expect = 5e-09
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 26/125 (20%)
Query: 61 LPSLNRKMDGPFLMPVVEKF--KDMGTVVMGKVESGEAKKGQS-----LVLMPNRTPV-- 111
+P+ R +D PFLMPV + F GTV G++E G+ K G L +T V
Sbjct: 210 IPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTG 269
Query: 112 ------IVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDA 165
+ + + G+N+ V L+G+ ++V G VL P + F+A
Sbjct: 270 VEMHRKTLQEGIA----------GDNVGVLLRGVSREEVERGQVLAKPGS-ITPHTKFEA 318
Query: 166 QIVIL 170
+ +L
Sbjct: 319 SVYVL 323
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger,
initiate translation, tRNA binding, mRNA bindin binding;
HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB:
3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A*
3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Length = 403
Score = 46.9 bits (112), Expect = 3e-06
Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 33/147 (22%)
Query: 58 IDAL--------PSLNRKMDGPFLMPVVEKF----------KDMGTVVMGKVESGEAKKG 99
ID+L + R + +M V+ F + G V+ G + G K
Sbjct: 179 IDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVD 238
Query: 100 QSLVLMPNRTPV------------IVDQLWSDDEEVSSVGPGENIKVKLK---GIEEDDV 144
Q + ++P + + DEE PG + + + + D
Sbjct: 239 QEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADN 298
Query: 145 SPGFVLCDPNNPARTARVFDAQIVILE 171
G ++ + + +LE
Sbjct: 299 LLGSIITLADAEVPVLWNIRIKYNLLE 325
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase,
EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 42.3 bits (100), Expect = 9e-05
Identities = 28/150 (18%), Positives = 43/150 (28%), Gaps = 37/150 (24%)
Query: 58 IDAL--------PSLNRKMDGPFLMPVVEKF----------KDMGTVVMGKVESGEAKKG 99
ID L P+ R D M V F G V+ G + G K G
Sbjct: 185 IDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVG 244
Query: 100 QSLVLMPNRTPV------------IVDQLWSDDEEVSSVGPGENIKVK---LKGIEEDDV 144
+ + P + L + + + PG I V + + D
Sbjct: 245 DEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDA 304
Query: 145 SPGFVLCDPNN--PARTARVFDAQIVILEH 172
G V+ P P R + +L+
Sbjct: 305 LTGSVVGLPGTLPPIREK--ITIRANLLDR 332
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus
abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A*
1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Length = 410
Score = 41.1 bits (97), Expect = 2e-04
Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 37/149 (24%)
Query: 58 IDAL--------PSLNRKMDGPFLMPVVEKF----------KDMGTVVMGKVESGEAKKG 99
ID L P+ R + P M V+ F K +G V+ G + G+ K G
Sbjct: 187 IDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVG 246
Query: 100 QSLVLMPNRTPVIVDQLWSD------------DEEVSSVGPGENIKVKLK---GIEEDDV 144
+ + P ++ + + V PG + V K + + D+
Sbjct: 247 DEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDL 306
Query: 145 SPGFVLCDPNN--PARTARVFDAQIVILE 171
G V+ P P + ++ +LE
Sbjct: 307 MAGNVVGKPGKLPPVWDS--LRLEVHLLE 333
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function,
protein structure INI secsg, conserved hypothetical
protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP:
b.43.3.1
Length = 116
Score = 36.2 bits (84), Expect = 0.002
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 74 MPVVEKFKDMG-TVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENI 132
+ V E MG V++G VESG G + + ++ + E+V G+ I
Sbjct: 37 VVVEEVVNIMGKDVIIGTVESGMIGVGFKVKGPSGIG--GIVRIERNREKVEFAIAGDRI 94
Query: 133 KVKLKGIEEDDVSPGFVLC 151
+ ++G + V G VL
Sbjct: 95 GISIEG-KIGKVKKGDVLE 112
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.068
Identities = 24/164 (14%), Positives = 52/164 (31%), Gaps = 36/164 (21%)
Query: 92 ESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLC 151
E+GE + +L + + D ++V + K L E D + +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDN---FDCKDVQ-----DMPKSILSKEEIDHI-----IM 56
Query: 152 DPNNPARTARVFDAQIVILEHK----------SIICAGYSAVM---HIHCVAEEVNVKAL 198
+ + T R+F L K ++ Y +M + +
Sbjct: 57 SKDAVSGTLRLFW----TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 199 ICLIDKKTGEKSK------TRPRFVKQDQIAIMRLEAAGVICLD 236
I D+ + +R + + + A++ L A + +D
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
>2dy1_A Elongation factor G; translocation, GTP complex, structural
genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus}
SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1
PDB: 1wdt_A*
Length = 665
Score = 32.1 bits (74), Expect = 0.15
Identities = 27/129 (20%), Positives = 37/129 (28%), Gaps = 32/129 (24%)
Query: 58 IDALPS-LNRKMDGPFLMPVVEKFKDM-----GTVVMGKVESGEAKKGQSLVLMPNRTPV 111
++ALPS R DGP L V FK G V ++ G K G +
Sbjct: 269 LEALPSPTERFGDGPPLAKV---FKVQVDPFMGQVAYLRLYRGRLKPG-DSLQSEAGQVR 324
Query: 112 I--VDQLWSDD-EEVSSVGPGENIK--VKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQ 166
+ + D EV G + K + + G VL P
Sbjct: 325 LPHLYVPMGKDLLEVEEAEAGF-VLGVPKAE-----GLHRGMVLWQGEKP---------- 368
Query: 167 IVILEHKSI 175
E
Sbjct: 369 -ESEEVPFA 376
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.00A
{Thermus thermophilus}
Length = 434
Score = 29.5 bits (67), Expect = 1.1
Identities = 14/122 (11%), Positives = 35/122 (28%), Gaps = 20/122 (16%)
Query: 122 EVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYS 181
+ + ++ L+ + D + A ++ + + + G
Sbjct: 14 RTTPL---ALLEEALERAKAFQDRNALAYLDEEAARKEALALTEELRRGQVRGPL-HGLP 69
Query: 182 AVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICL-----D 236
+ VK L + T +K + ++ A+ RL AG +
Sbjct: 70 -----------LTVKDLFPVKGMPTRAGTKAPLPPLPEEARAVRRLREAGALLFAKTNMH 118
Query: 237 QF 238
+
Sbjct: 119 EI 120
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 1.3
Identities = 38/267 (14%), Positives = 79/267 (29%), Gaps = 92/267 (34%)
Query: 25 LIISPSGQMGQNLKEPVGPEICTWWKGGAFIP---FIDALPSLNRKM-DGP--------- 71
L I G+ G+ ++E I G F +
Sbjct: 1672 LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF 1731
Query: 72 -----FLMPV--VEKFKDMGTVVMGKVE---S-GE--------------------AKKGQ 100
LM E K G + S GE +G
Sbjct: 1732 TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGM 1791
Query: 101 SL-VLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPART 159
++ V +P D+L + + ++ PG ++ + + + RT
Sbjct: 1792 TMQVAVPR------DELGRSNYGMIAINPGRVA----ASFSQEALQ---YVVERVG-KRT 1837
Query: 160 ARVFDAQIV---ILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRF 216
+ +IV + E++ + AG + + + +++ F
Sbjct: 1838 GWL--VEIVNYNV-ENQQYVAAG-----------DLRALDTVTNVLN------------F 1871
Query: 217 VKQDQIAIMRLEAAGVICLDQFK--LF 241
+K +I I+ L+ + + L++ + LF
Sbjct: 1872 IKLQKIDIIELQKS--LSLEEVEGHLF 1896
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family
GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN;
1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27
b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A*
Length = 971
Score = 27.5 bits (60), Expect = 4.9
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 42 GPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVV 87
GP I GG F ++ + + R D +L ++ +
Sbjct: 96 GPYINAEVSGGGFPGWLQRVDGILRTSDEAYLKATDNYASNIAATI 141
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.420
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,935,334
Number of extensions: 241632
Number of successful extensions: 552
Number of sequences better than 10.0: 1
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 25
Length of query: 252
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 161
Effective length of database: 4,160,982
Effective search space: 669918102
Effective search space used: 669918102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)