RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10357
         (252 letters)



>d1f60a2 b.44.1.1 (A:335-441) Elongation factor eEF-1alpha,
           C-terminal domain {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 107

 Score =  103 bits (258), Expect = 7e-29
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query: 163 FDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQI 222
           F+A +++L H   I AGYS V+  H          L+   D+++G+K +  P+F+K    
Sbjct: 4   FNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDA 63

Query: 223 AIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           A+++   +  +C++ F  +P +GRF +RD 
Sbjct: 64  ALVKFVPSKPMCVEAFSEYPPLGRFAVRDM 93


>d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release
           factor ERF2, post-G domain {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 95

 Score = 98.3 bits (245), Expect = 4e-27
 Identities = 35/94 (37%), Positives = 63/94 (67%), Gaps = 2/94 (2%)

Query: 64  LNRKMDGPFLMPVVEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD-DEE 122
           L RK++ PF+MP+  K+KD+GT++ GK+E+G  KK  ++++MP    + V  ++ + DEE
Sbjct: 2   LERKVNAPFIMPIASKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEE 61

Query: 123 VSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNP 156
           +SS   G+ ++++++G +  DV  G+VL    NP
Sbjct: 62  ISSSICGDQVRLRVRGDDS-DVQTGYVLTSTKNP 94


>d1jnya2 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha,
           C-terminal domain {Archaeon Sulfolobus solfataricus
           [TaxId: 2287]}
          Length = 107

 Score = 90.4 bits (224), Expect = 6e-24
 Identities = 29/93 (31%), Positives = 59/93 (63%)

Query: 160 ARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQ 219
           A  F A+I+++ H + +  GY+ V+H+H  +    V  L+  +D +TG++++  P+F+KQ
Sbjct: 1   ADEFTARIIVVWHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQ 60

Query: 220 DQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
             +AI++ +    +C++++  FP +GRF +RD 
Sbjct: 61  GDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDM 93


>d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and
           4 {Methanococcus maripaludis [TaxId: 39152]}
          Length = 92

 Score = 84.6 bits (209), Expect = 8e-22
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 66  RKMDGPFLMPV--VEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEV 123
           R  +  F MP+      K  GTVV G +  G  K G  L ++P      V  +    E V
Sbjct: 1   RNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESV 60

Query: 124 SSVGPGENIKVKLKGIEEDDVSPGFVLCDPN 154
                G+ + + ++G++   +  G +L   +
Sbjct: 61  MEAKAGDRVGMAIQGVDAKQIYRGCILTSKD 91


>d1r5ba2 b.44.1.1 (A:555-622) Eukaryotic peptide chain release
           factor ERF2, C-terminal domain {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 68

 Score = 82.9 bits (205), Expect = 2e-21
 Identities = 30/62 (48%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 163 FDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQI 222
           F AQI ILE  SI+  GYS VMHIH   EEV+   L+  +D KT  KSK  P F  +   
Sbjct: 6   FIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLD-KTNRKSKKPPMFATKGMK 64

Query: 223 AI 224
            I
Sbjct: 65  II 66


>d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2
           {Thermus thermophilus [TaxId: 274]}
          Length = 100

 Score = 82.2 bits (203), Expect = 8e-21
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 66  RKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVL---MPNRTPVIVDQLWSDD 120
           R +D PFLMPV + F     GTV  G++E G+ K G  + +    P     +V  +    
Sbjct: 3   RDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHR 62

Query: 121 EEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNN 155
           + +     G+N+ V L+G+  ++V  G VL  P +
Sbjct: 63  KTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGS 97


>d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 94

 Score = 81.4 bits (201), Expect = 1e-20
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 69  DGPFLMPVVEKFKDM--GTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSV 126
           D P  +P+ + +K    GTV +G+VE+G  K G  +   P      V  +    E++   
Sbjct: 1   DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQG 60

Query: 127 GPGENIKVKLKGIEEDDVSPGFVLCDPNNP 156
            PG+N+   +K +   ++  G V  D  N 
Sbjct: 61  VPGDNVGFNVKNVSVKEIRRGNVCGDAKND 90


>d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2
           {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
          Length = 98

 Score = 81.1 bits (200), Expect = 2e-20
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 4/93 (4%)

Query: 66  RKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVI--VDQLWSDDE 121
           R ++ PFL+PV   +     GTVV G +E G  KKG     + +   +   V  +    +
Sbjct: 2   RDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHK 61

Query: 122 EVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN 154
            +     G+N+   ++G++ +D+  G V+  P 
Sbjct: 62  SLDRAEAGDNLGALVRGLKREDLRRGLVMAKPG 94


>d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2
           {Escherichia coli [TaxId: 562]}
          Length = 92

 Score = 81.0 bits (200), Expect = 2e-20
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 4/90 (4%)

Query: 68  MDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTP--VIVDQLWSDDEEV 123
           +D PFL+P+ + F     GTVV G+VE G  K G+ + ++  +         +    + +
Sbjct: 2   IDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLL 61

Query: 124 SSVGPGENIKVKLKGIEEDDVSPGFVLCDP 153
                GEN+ V L+GI+ +++  G VL  P
Sbjct: 62  DEGRAGENVGVLLRGIKREEIERGQVLAKP 91


>d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2
           {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
          Length = 95

 Score = 81.1 bits (200), Expect = 2e-20
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 69  DGPFLMPV--VEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSV 126
           D P  +P+  V     +GTV +G+VESG  K G  +V MP      V  + +   ++   
Sbjct: 3   DKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKA 62

Query: 127 GPGENIKVKLKGIEEDDVSPGFVLCDPNNP 156
            PG+NI   ++G+E+ D+  G V+  PNNP
Sbjct: 63  EPGDNIGFNVRGVEKKDIKRGDVVGHPNNP 92


>d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit
           cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae
           pv. tomato [TaxId: 323]}
          Length = 92

 Score = 65.7 bits (160), Expect = 9e-15
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 71  PFLMPV--VEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGP 128
               PV  V +         G + SG   KG  +V++P+     V  + + + E+   GP
Sbjct: 6   DLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGP 65

Query: 129 GENIKVKLKGIEEDDVSPGFVLCDPNNP 156
           G+ + + ++   E D+S G +L   +N 
Sbjct: 66  GQAVTLTMED--EIDISRGDLLVHADNV 91


>d1zunb2 b.44.1.1 (B:330-434) Sulfate adenylate transferase subunit
           cysN/C, EF-Tu domain 3-like domain {Pseudomonas syringae
           pv. tomato [TaxId: 323]}
          Length = 105

 Score = 63.5 bits (154), Expect = 1e-13
 Identities = 15/93 (16%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 160 ARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQ 219
           +  FDA +V +  + ++  G    +         ++ ++   +D  T E+       ++ 
Sbjct: 3   SDAFDAMLVWMAEEPML-PGKKYDIKRATSYVPGSIASITHRVDVNTLEEGP--ASSLQL 59

Query: 220 DQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           ++I  +++     I LD +      G F + D 
Sbjct: 60  NEIGRVKVSLDAPIALDGYSSNRTTGAFIVIDR 92


>d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 91

 Score = 56.0 bits (135), Expect = 4e-11
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 74  MPVVEKFKDMG-TVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENI 132
           + V E    MG  V++G VESG    G  +          + ++  + E+V     G+ I
Sbjct: 12  VVVEEVVNIMGKDVIIGTVESGMIGVGFKVKGPSGIG--GIVRIERNREKVEFAIAGDRI 69

Query: 133 KVKLKGIEEDDVSPGFVLCDPNN 155
            + ++G +   V  G VL     
Sbjct: 70  GISIEG-KIGKVKKGDVLEIYQT 91


>d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit,
           domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]}
          Length = 121

 Score = 51.6 bits (123), Expect = 3e-09
 Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 25/115 (21%)

Query: 66  RKMDGPFLMPVVEKF----------KDMGTVVMGKVESGEAKKGQSLVLMP--------- 106
           R  + P  M V+  F          K +G V+ G +  G+ K G  + + P         
Sbjct: 3   RDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGR 62

Query: 107 ---NRTPVIVDQLWSDDEEVSSVGPGENIKVKLK---GIEEDDVSPGFVLCDPNN 155
                    +  L +  + V    PG  + V  K    + + D+  G V+  P  
Sbjct: 63  IKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGK 117


>d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit,
           domain II {Archaeon Methanococcus jannaschii [TaxId:
           2190]}
          Length = 118

 Score = 48.1 bits (114), Expect = 5e-08
 Identities = 21/115 (18%), Positives = 32/115 (27%), Gaps = 25/115 (21%)

Query: 66  RKMDGPFLMPVVEKF----------KDMGTVVMGKVESGEAKKGQSLVLMP--------- 106
           R  D    M V   F             G V+ G +  G  K G  + + P         
Sbjct: 1   RDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNK 60

Query: 107 ---NRTPVIVDQLWSDDEEVSSVGPGENIKVKLK---GIEEDDVSPGFVLCDPNN 155
                    +  L + +  +    PG  I V       + + D   G V+  P  
Sbjct: 61  TFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGT 115


>d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2
           and 4 {Archaeon Methanobacterium thermoautotrophicum
           [TaxId: 145262]}
          Length = 128

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 84  GTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEED- 142
             +   +V +G  ++G  L+     T   V+ +    E + S   G+ + + +K      
Sbjct: 20  PAIGGVEVLTGVIRQGYPLMNDDGETVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGK 79

Query: 143 DVSPGFVLC 151
            +  G  L 
Sbjct: 80  TIHEGDTLY 88


>d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit,
           domain II {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 114

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 25/114 (21%)

Query: 66  RKMDGPFLMPVVEKF----------KDMGTVVMGKVESGEAKKGQSLVLMPNRTP----- 110
           R +    +M V+  F          +  G V+ G +  G  K  Q + ++P         
Sbjct: 1   RDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGK 60

Query: 111 -------VIVDQLWSDDEEVSSVGPGENIKVKLK---GIEEDDVSPGFVLCDPN 154
                    +  +   DEE     PG  + +       + + D   G ++   +
Sbjct: 61  VSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLAD 114


>d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II
           {Thermus thermophilus, EF-G-2 [TaxId: 274]}
          Length = 103

 Score = 35.8 bits (82), Expect = 8e-04
 Identities = 22/96 (22%), Positives = 31/96 (32%), Gaps = 8/96 (8%)

Query: 69  DGPFLMPVVEKFKD--MGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDD--EEVS 124
           DGP L  V +   D  MG V   ++  G  K G SL     +  +    +       EV 
Sbjct: 7   DGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAGQVRLPHLYVPMGKDLLEVE 66

Query: 125 SVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTA 160
               G    + +   E   +  G VL     P    
Sbjct: 67  EAEAGFV--LGVPKAE--GLHRGMVLWQGEKPESEE 98


>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
           factor ERF2, G domain {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 245

 Score = 32.1 bits (72), Expect = 0.039
 Identities = 10/36 (27%), Positives = 22/36 (61%)

Query: 26  IISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDAL 61
            +  S   GQN+K+ V   +C W++G + + ++D++
Sbjct: 209 YMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSM 244


>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
           cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
           pv. tomato [TaxId: 323]}
          Length = 222

 Score = 28.7 bits (63), Expect = 0.51
 Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 26  IISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALP 62
            +  S   G N+      E   W+ G + +  ++ + 
Sbjct: 185 FVPMSALKGDNVVNK--SERSPWYAGQSLMEILETVE 219


>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal
           domain {Penicillium sp. [TaxId: 5081]}
          Length = 354

 Score = 28.6 bits (63), Expect = 0.69
 Identities = 9/47 (19%), Positives = 17/47 (36%)

Query: 42  GPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVM 88
           GP I     GG F  ++  +  + R  D  +L        ++   + 
Sbjct: 96  GPYINAEVSGGGFPGWLQRVDGILRTSDEAYLKATDNYASNIAATIA 142


>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 27.4 bits (60), Expect = 1.9
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 8/45 (17%)

Query: 145 SPGFVLCDPNNPARTARVFDAQIV--------ILEHKSIICAGYS 181
           SP +V C  +N  + A V D   V        +LE+  +  AG++
Sbjct: 573 SPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVRVRRAGFA 617


>d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 138

 Score = 26.2 bits (57), Expect = 2.5
 Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 19/108 (17%)

Query: 65  NRKMDGPFLMPVVEKF--KDMGTVV-MGKVESGEAKKGQSLVLM-PNRTPVIVDQLWSDD 120
           N       ++ V +     D G     G+V +G  K GQ + +  PN  P   D L+   
Sbjct: 28  NCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKA 87

Query: 121 ------------EEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNP 156
                       E +     G NI + L GI++  +     L      
Sbjct: 88  IQRVVLMMGRFVEPIDDCPAG-NI-IGLVGIDQFLLK-TGTLTTSETA 132


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 27.0 bits (59), Expect = 3.0
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 8/45 (17%)

Query: 145 SPGFVLCDPNNPARTARVFDAQIV--------ILEHKSIICAGYS 181
           +P FV C   N  + A   DA +V        +LE   I   G+ 
Sbjct: 599 NPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFP 643


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 26.6 bits (58), Expect = 3.9
 Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 8/44 (18%)

Query: 146 PGFVLCDPNNPARTARVFDAQIV--------ILEHKSIICAGYS 181
           P FV C   N  +     + ++V        +LE   I   G+ 
Sbjct: 603 PHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFP 646


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 25.9 bits (56), Expect = 6.9
 Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 8/44 (18%)

Query: 146 PGFVLCDPNNPARTARVFDAQIV--------ILEHKSIICAGYS 181
           P +V C   N  +    FD +          +LE   I  AG+ 
Sbjct: 594 PHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFP 637


>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
           (G) domain {Archaeon Sulfolobus solfataricus [TaxId:
           2287]}
          Length = 224

 Score = 24.8 bits (53), Expect = 9.2
 Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 2/33 (6%)

Query: 30  SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALP 62
               G N+      E   W+ G     ++D L 
Sbjct: 190 VAPSGDNITHK--SENMKWYNGPTLEEYLDQLE 220


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 25.4 bits (55), Expect = 9.3
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 8/44 (18%)

Query: 146 PGFVLCDPNNPARTARVFDAQIV--------ILEHKSIICAGYS 181
           P FV C   N  +   + DA++V        +LE   I   G+ 
Sbjct: 617 PHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFP 660


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0562    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 962,292
Number of extensions: 44915
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 31
Length of query: 252
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,268,006
Effective search space: 214293014
Effective search space used: 214293014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)