BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10359
(249 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 233 bits (595), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 115/175 (65%), Positives = 132/175 (75%)
Query: 32 KGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVI 91
KGPKVTD V+F ++IG +G+I IGLFGKTVP+T NFIELAK+P+G+GY GSKFHRVI
Sbjct: 1 KGPKVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVI 60
Query: 92 KDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
DFMIQ SIYG+KF DENFKL HYG+GWLSMANAG DTNGSQFFITT
Sbjct: 61 ADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTV 120
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFS 206
KTPWLDGRHVVFGK++ G D+V+KIE +E DRP Q V I GH V+ PFS
Sbjct: 121 KTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAVDTPFS 175
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 231 bits (588), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 111/181 (61%), Positives = 141/181 (77%)
Query: 26 ANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGS 85
A ++ KGPKVT V+F ++IG+ ++G++ IGLFGKTVP+TV NF+ LA +G GYK S
Sbjct: 1 AMDEKKKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDS 60
Query: 86 KFHRVIKDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQ 145
KFHRVIKDFMIQ SIYG++F DENFKL HYG GW+SMANAGKDTNGSQ
Sbjct: 61 KFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQ 120
Query: 146 FFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPF 205
FFITT KT WLDG+HVVFGKV+ G ++V+K+E+++TDGRD+P++ VTI DCG VE+PF
Sbjct: 121 FFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVEKPF 180
Query: 206 S 206
+
Sbjct: 181 A 181
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 228 bits (581), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 110/181 (60%), Positives = 140/181 (77%)
Query: 26 ANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGS 85
A ++ K PKVT V+F ++IG+ ++G++ IGLFGKTVP+TV NF+ LA +G GYK S
Sbjct: 1 AMDEKKKRPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDS 60
Query: 86 KFHRVIKDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQ 145
KFHRVIKDFMIQ SIYG++F DENFKL HYG GW+SMANAGKDTNGSQ
Sbjct: 61 KFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQ 120
Query: 146 FFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPF 205
FFITT KT WLDG+HVVFGKV+ G ++V+K+E+++TDGRD+P++ VTI DCG VE+PF
Sbjct: 121 FFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVEKPF 180
Query: 206 S 206
+
Sbjct: 181 A 181
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 226 bits (575), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 109/175 (62%), Positives = 135/175 (77%)
Query: 32 KGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVI 91
KGPKVT V+F ++IG+ +VG++ GLFGKTVP+TV NF+ LA +G GYK SKFHRVI
Sbjct: 10 KGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVI 69
Query: 92 KDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
KDFMIQ SIYG++F DENFKL HYG GW+SMANAGKDTNGSQFFITT
Sbjct: 70 KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 129
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFS 206
KT WLDG+HVVFGKV+ G ++V+K+ES++TD RD+P++ V I DCG VE+PF+
Sbjct: 130 KTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKPFA 184
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 224 bits (570), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 108/174 (62%), Positives = 134/174 (77%)
Query: 33 GPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIK 92
GPKVT V+F ++IG+ +VG++ GLFGKTVP+TV NF+ LA +G GYK SKFHRVIK
Sbjct: 1 GPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIK 60
Query: 93 DFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKK 152
DFMIQ SIYG++F DENFKL HYG GW+SMANAGKDTNGSQFFITT K
Sbjct: 61 DFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVK 120
Query: 153 TPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFS 206
T WLDG+HVVFGKV+ G ++V+K+ES++TD RD+P++ V I DCG VE+PF+
Sbjct: 121 TAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKPFA 174
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 207 bits (527), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 103/174 (59%), Positives = 123/174 (70%)
Query: 32 KGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVI 91
+GP VT V+F ++IG+ +VG+I IGLFGK VP+TV+NF+ LA +G GYKGSKFHRVI
Sbjct: 10 RGPSVTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVI 69
Query: 92 KDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
KDFMIQ SIYG+ F DENFKL HYG GW+SMANAG DTNGSQFFIT
Sbjct: 70 KDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLT 129
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPF 205
K WLDG+HVVFGKVI G +V IE TDG DRP+ +I++ G V+ PF
Sbjct: 130 KPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKIDVKTPF 183
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 206 bits (524), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 103/174 (59%), Positives = 122/174 (70%)
Query: 32 KGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVI 91
+GP VTD V+F ++IG+ +VG+I IGLFG VP+TV+NF+ LA +G GYKGS FHRVI
Sbjct: 2 RGPSVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVI 61
Query: 92 KDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
KDFMIQ SIYG+ F DENFKL HYG GW+SMANAG DTNGSQFFIT
Sbjct: 62 KDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLT 121
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPF 205
K WLDG+HVVFGKV+ G +V IE TDG DRP+ TIV+ G V+ PF
Sbjct: 122 KPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDVKTPF 175
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/164 (56%), Positives = 117/164 (71%), Gaps = 1/164 (0%)
Query: 34 PKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKD 93
P VTD V+F I IG+ VG++ IGLFG VP+TV+NF +LA G GYKGS FHRVI++
Sbjct: 2 PVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRN 61
Query: 94 FMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKT 153
FMIQ SIYG +F+DEN K+ H+ G +SMANAG ++NGSQFF+TT T
Sbjct: 62 FMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPT 120
Query: 154 PWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
PWLDGRHVVFGKV+ G D+VKK+E+++T D+P + V I DCG
Sbjct: 121 PWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCG 164
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 171 bits (432), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 89/164 (54%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 34 PKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKD 93
P+VT V+F + I +G+I IGLFGK P T +NF +L G GYK S FHRVI++
Sbjct: 8 PEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQN 67
Query: 94 FMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKT 153
FMIQ SIYG+KF DEN + H+ G LSMANAG +TNGSQFFITT T
Sbjct: 68 FMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPT 126
Query: 154 PWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
PWLDGRHVVFGKV+ G D+V +IE ++T+ DRPV+ V IV G
Sbjct: 127 PWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASG 170
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 168 bits (425), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 88/164 (53%), Positives = 108/164 (65%), Gaps = 1/164 (0%)
Query: 34 PKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKD 93
P+VT V+F + I +G+I IGLFGK P T +NF +L G GYK S FHRVI++
Sbjct: 8 PEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQN 67
Query: 94 FMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKT 153
FMIQ SIYG+KF DEN + H+ G LSMANAG +TNGSQFFITT T
Sbjct: 68 FMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPT 126
Query: 154 PWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
PWLDG HVVFGKV+ G D+V +IE ++T+ DRPV+ V IV G
Sbjct: 127 PWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASG 170
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/173 (48%), Positives = 103/173 (59%), Gaps = 5/173 (2%)
Query: 30 VAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAK---RPEGQ--GYKG 84
VA V +V+F + IG VG+++I LF VP+T +NF + R +G GYKG
Sbjct: 3 VANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKG 62
Query: 85 SKFHRVIKDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGS 144
S FHRVIKDFMIQ ASIY F DENFKL H G LSMAN+G TNG
Sbjct: 63 STFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGC 122
Query: 145 QFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
QFFIT K WLDG+HVVFGK+I G +++KIE+ T ++P V I CG
Sbjct: 123 QFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCG 175
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/169 (47%), Positives = 104/169 (61%), Gaps = 3/169 (1%)
Query: 30 VAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHR 89
+AK + V+ I+IG G+I++ L VP T +NF L +G G+KGS FHR
Sbjct: 4 IAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR 63
Query: 90 VIKDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFIT 149
+I FM Q SIYG KF+DENF L H G G LSMAN+G +TNGSQFF+T
Sbjct: 64 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 123
Query: 150 TKKTPWLDGRHVVFGKVITGGDIVKKIESSET-DGRDRPVQGVTIVDCG 197
KT WLDG+HVVFG+V G D++++IE+ + DG +P Q V I DCG
Sbjct: 124 CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDG--KPKQKVIIADCG 170
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/163 (49%), Positives = 99/163 (60%), Gaps = 3/163 (1%)
Query: 38 DIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQ 97
D+ + + E VG+I LF K VP+T +NF EL KRP G+GY+ S FHR+I +FMIQ
Sbjct: 8 DVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQ 67
Query: 98 XXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLD 157
SIYGDKF DENF H G LSMANAG +TNGSQFFITT T WLD
Sbjct: 68 GGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLD 127
Query: 158 GRHVVFGKVI--TGGDIVKKIES-SETDGRDRPVQGVTIVDCG 197
G+HVVFG+V +VK+IE+ + G R IV+CG
Sbjct: 128 GKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCG 170
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 147 bits (372), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 95/158 (60%), Gaps = 1/158 (0%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXX 99
V+F I +G I+ LF VP+T NF L +G GY GS FHRVI DFM+Q
Sbjct: 4 VFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGG 63
Query: 100 XXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGR 159
SIYG KF DENF+L H G LSMANAG +TNGSQFFITT T WLDG+
Sbjct: 64 DFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGK 123
Query: 160 HVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
HVVFG+VI G ++VK IE +E G +P + I CG
Sbjct: 124 HVVFGEVIDGMNVVKAIE-AEGSGSGKPRSRIEIAKCG 160
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 147 bits (372), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 101/166 (60%), Gaps = 8/166 (4%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG-------YKGSKFHRVIK 92
V+F I IG G+I + L+ VP+T NF L G G +KGSKFHR+I
Sbjct: 6 VFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIP 65
Query: 93 DFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKK 152
+FMIQ SIYG+KF DENFK H G G LSMANAG +TNGSQFF+ T K
Sbjct: 66 NFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVK 125
Query: 153 TPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
T WLDG+HVVFG+V+ G D+VK +ES+ + +PV+ I DCG
Sbjct: 126 TEWLDGKHVVFGRVVEGLDVVKAVESNGSQ-SGKPVKDCMIADCGQ 170
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 147 bits (372), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 78/159 (49%), Positives = 100/159 (62%), Gaps = 3/159 (1%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXX 99
V+ I+IG G+I++ L VP T +NF L +G G+KGS FHR+I FM Q
Sbjct: 6 VYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGG 65
Query: 100 XXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGR 159
SIYG KF+DENF L H G G LSMAN+G +TNGSQFF+T KT WLDG+
Sbjct: 66 DFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGK 125
Query: 160 HVVFGKVITGGDIVKKIESSET-DGRDRPVQGVTIVDCG 197
HVVFG+V G D++++IE+ + DG +P Q V I DCG
Sbjct: 126 HVVFGEVTEGLDVLRQIEAQGSKDG--KPKQKVIIADCG 162
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 102/172 (59%), Gaps = 8/172 (4%)
Query: 34 PKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG--------YKGS 85
P+ + F I+I VG+I LF P+T +NF+ L +G G YKGS
Sbjct: 16 PRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGS 75
Query: 86 KFHRVIKDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQ 145
FHRV+K+FMIQ SIYG F+DENF L H + LSMAN GK TNGSQ
Sbjct: 76 TFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQ 135
Query: 146 FFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
FFITTK P LDG HVVFG VI+G +++++IE+ +TD RP V ++DCG
Sbjct: 136 FFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCG 187
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 147 bits (370), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
V V+F I + +G++ LF VP+T +NF L+ +G GYKGS FHR+I FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 96 IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
Q SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 62 CQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
LDG+HVVFGKV G +IV+ +E + + + +TI DCG
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 163
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 147 bits (370), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
V V+F I + +G++ LF VP+T +NF L+ +G GYKGS FHR+I FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 96 IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
Q SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 62 CQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
LDG+HVVFGKV G +IV+ +E + + + +TI DCG
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 163
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 147 bits (370), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 80/159 (50%), Positives = 98/159 (61%), Gaps = 3/159 (1%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXX 99
V+F I I + G+I L+ + VP+T +NF ELA G GYK S FHRVI FM+Q
Sbjct: 5 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGG 64
Query: 100 XXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGR 159
SIYG+KF DENF++ H G LSMANAG +TNGSQFFITT T WLDG+
Sbjct: 65 DFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGK 124
Query: 160 HVVFGKVITGGDIVKKIES-SETDGRDRPVQGVTIVDCG 197
HVVFG+VI G DIV+K+E G+ + I DCG
Sbjct: 125 HVVFGEVIEGLDIVRKVEGKGSASGKTNAT--IKITDCG 161
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 147 bits (370), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
V V+F I + +G++ LF VP+T +NF L+ +G GYKGS FHR+I FM
Sbjct: 10 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 69
Query: 96 IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
Q SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 70 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 129
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
LDG+HVVFGKV G +IV+ +E + + + +TI DCG
Sbjct: 130 LDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 171
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 146 bits (369), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
V V+F I + +G++ LF VP+T +NF L+ +G GYKGS FHR+I FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 96 IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
Q SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
LDG+HVVFGKV G +IV+ +E + + + +TI DCG
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 163
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 146 bits (369), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 80/159 (50%), Positives = 98/159 (61%), Gaps = 3/159 (1%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXX 99
V+F I I + G+I L+ + VP+T +NF ELA G GYK S FHRVI FM+Q
Sbjct: 6 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGG 65
Query: 100 XXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGR 159
SIYG+KF DENF++ H G LSMANAG +TNGSQFFITT T WLDG+
Sbjct: 66 DFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGK 125
Query: 160 HVVFGKVITGGDIVKKIES-SETDGRDRPVQGVTIVDCG 197
HVVFG+VI G DIV+K+E G+ + I DCG
Sbjct: 126 HVVFGEVIEGLDIVRKVEGKGSASGKTNAT--IKITDCG 162
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
V V+F I + +G++ LF VP+T +NF L+ +G GYKGS FHR+I FM
Sbjct: 21 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 80
Query: 96 IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
Q SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 81 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 140
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
LDG+HVVFGKV G +IV+ +E + + + +TI DCG
Sbjct: 141 LDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 182
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
V V+F I + +G++ LF VP+T +NF L+ +G GYKGS FHR+I FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 96 IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
Q SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
LDG+HVVFGKV G +IV+ +E + + + +TI DCG
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 163
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
V V+F I + +G++ LF VP+T +NF L+ +G GYKGS FHR+I FM
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 60
Query: 96 IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
Q SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 61 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 120
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
LDG+HVVFGKV G +IV+ +E + + + +TI DCG
Sbjct: 121 LDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 162
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
V V+F I + +G++ LF VP+T +NF L+ +G GYKGS FHR+I FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 96 IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
Q SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
LDG+HVVFGKV G +IV+ +E + + + +TI DCG
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 163
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 100/159 (62%), Gaps = 1/159 (0%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXX 99
V+F + E ++G+I + L VP+T +NF L +RP+G+GYKGS FHR+I FM+Q
Sbjct: 30 VYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGG 89
Query: 100 XXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGR 159
SIYG+KF DENF+L H G LSMAN G TNGSQFFIT KT WLD +
Sbjct: 90 DYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEK 149
Query: 160 HVVFGKVITGGDIVKKIESSETD-GRDRPVQGVTIVDCG 197
HVVFG+V+ G D+V KI ++ G+ + + I DCG
Sbjct: 150 HVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCG 188
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 95/160 (59%), Gaps = 1/160 (0%)
Query: 39 IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQX 98
+V+ + +G++ + L VP+T +NF L +G GYKGS FHRVI FM Q
Sbjct: 6 LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQA 65
Query: 99 XXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDG 158
SIYG +F DENF L H G G LSMANAG +TNGSQFFI T KT WLDG
Sbjct: 66 GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 125
Query: 159 RHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
+HVVFG VI G D+VKKIES + R + + I DCG
Sbjct: 126 KHVVFGHVIEGMDVVKKIESFGSK-SGRTSKKIVITDCGQ 164
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 95/160 (59%), Gaps = 1/160 (0%)
Query: 39 IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQX 98
+V+ + +G++ + L VP+T +NF L +G GYKGS FHRVI FM Q
Sbjct: 5 LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQA 64
Query: 99 XXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDG 158
SIYG +F DENF L H G G LSMANAG +TNGSQFFI T KT WLDG
Sbjct: 65 GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 124
Query: 159 RHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
+HVVFG VI G D+VKKIES + R + + I DCG
Sbjct: 125 KHVVFGHVIEGMDVVKKIESFGSK-SGRTSKKIVITDCGQ 163
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 95/160 (59%), Gaps = 1/160 (0%)
Query: 39 IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQX 98
+V+ + +G++ + L VP+T +NF L +G GYKGS FHRVI FM Q
Sbjct: 5 LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQA 64
Query: 99 XXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDG 158
SIYG +F DENF L H G G LSMANAG +TNGSQFFI T KT WLDG
Sbjct: 65 GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 124
Query: 159 RHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
+HVVFG VI G D+VKKIES + R + + I DCG
Sbjct: 125 KHVVFGHVIEGMDVVKKIESFGSK-SGRTSKKIVITDCGQ 163
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 95/160 (59%), Gaps = 1/160 (0%)
Query: 39 IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQX 98
+V+ + +G++ + L VP+T +NF L +G GYKGS FHRVI FM Q
Sbjct: 4 LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQA 63
Query: 99 XXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDG 158
SIYG +F DENF L H G G LSMANAG +TNGSQFFI T KT WLDG
Sbjct: 64 GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 123
Query: 159 RHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
+HVVFG VI G D+VKKIES + R + + I DCG
Sbjct: 124 KHVVFGHVIEGMDVVKKIESFGSK-SGRTSKKIVITDCGQ 162
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
V V+F I + +G++ LF VP+T +NF L+ +G GYKGS FHR+I FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 96 IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
Q SIYG+KFEDENF L H G G L+MANAG +TNGSQFFI T KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFICTAKTEW 121
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
LDG+HVVFGKV G +IV+ +E + + + +TI DCG
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 163
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 98/163 (60%), Gaps = 1/163 (0%)
Query: 36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
V V+F I + +G++ LF VP+T +NF L+ +G GYKGS FHR+I FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 96 IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
Q SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKW 121
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
LDG HVVFGKV G +IV+ +E + + + +TI DCG
Sbjct: 122 LDGXHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 163
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 98/163 (60%), Gaps = 1/163 (0%)
Query: 36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
V V+F I + +G++ LF VP+T +NF L+ +G GYKGS FHR+I FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 96 IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
Q SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
LDG HVVFGKV G +IV+ +E + + + +TI DCG
Sbjct: 122 LDGXHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 163
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
V V+F I + +G++ LF VP+T +NF L+ +G GYKGS FH++I FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFM 61
Query: 96 IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
Q SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
LDG+HVVFGKV G +IV+ +E + + + +TI DCG
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 163
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 145 bits (365), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 98/162 (60%), Gaps = 1/162 (0%)
Query: 36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
V V+F I + +G++ LF VP+T +NF L+ +G GYKGS FHR+I FM
Sbjct: 6 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 65
Query: 96 IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
Q SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 66 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKW 125
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
LDG HVVFGKV G +IV+ +E + + + +TI DCG
Sbjct: 126 LDGXHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCG 166
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 98/163 (60%), Gaps = 1/163 (0%)
Query: 36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
V V+F I + +G++ LF VP+T +NF L+ +G GYKGS FHR+I FM
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 60
Query: 96 IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
Q SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 61 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKW 120
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
LDG+HVVFG V G +IV+ +E + + + +TI DCG
Sbjct: 121 LDGKHVVFGAVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 162
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 144 bits (364), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
V V+F I + +G++ LF VP+T +NF L+ +G GYKGS FHR+I FM
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 60
Query: 96 IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
Q SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 61 CQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 120
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
LDG+HVVFGKV G +IV+ ++ + + + +TI DCG
Sbjct: 121 LDGKHVVFGKVKEGMNIVEAMKRFGSR-NGKTSKKITIADCGQ 162
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 144 bits (363), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 97/166 (58%), Gaps = 8/166 (4%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG--------YKGSKFHRVI 91
+F I I G++ LF P+T +NF L +G G YK FHRV+
Sbjct: 29 CFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVV 88
Query: 92 KDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
KDFM+Q SIYG FEDE+F + H + LSMAN GKDTNGSQFFITTK
Sbjct: 89 KDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFFITTK 148
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
TP LDG HVVFG+VI+G ++V++IE+ +TD +P V I+ CG
Sbjct: 149 PTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCG 194
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 144 bits (362), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 99/166 (59%), Gaps = 9/166 (5%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG--------YKGSKFHRVI 91
V+F + IG VG+I + LF VP+T +NF L +G G +KG FHR+I
Sbjct: 18 VFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRII 77
Query: 92 KDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
K FMIQ SIYG+KFEDENF H G LSMANAG +TNGSQFFITT
Sbjct: 78 KKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTV 137
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
TP LDG+HVVFG+VI G + K +E+ E G ++P + I +CG
Sbjct: 138 PTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKPAKLCVIAECG 182
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 143 bits (361), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 79/171 (46%), Positives = 102/171 (59%), Gaps = 3/171 (1%)
Query: 28 EKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKF 87
E +AK + V+ I+IG G+I+ L VP T +NF L +G G+KGS F
Sbjct: 3 EPIAKKARSNPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFGFKGSSF 62
Query: 88 HRVIKDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFF 147
HR+I F Q SIYG KF+DENF L H G G LS AN+G +TNGSQFF
Sbjct: 63 HRIIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFF 122
Query: 148 ITTKKTPWLDGRHVVFGKVITGGDIVKKIESSET-DGRDRPVQGVTIVDCG 197
+T KT WLDG+HVVFG+V G D++++IE+ + DG +P Q V I DCG
Sbjct: 123 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDG--KPKQKVIIADCG 171
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/139 (52%), Positives = 89/139 (64%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXX 99
V+F ++ +G++ L+ VP+T +NF L +G GY GS FHRVI DFM+Q
Sbjct: 4 VYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGG 63
Query: 100 XXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGR 159
SIYG KF DENFK H G LSMANAG +TNGSQFFITT PWLDG+
Sbjct: 64 DFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGK 123
Query: 160 HVVFGKVITGGDIVKKIES 178
HVVFG+V+ G DIVKK+ES
Sbjct: 124 HVVFGEVVDGYDIVKKVES 142
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 96/166 (57%), Gaps = 8/166 (4%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG--------YKGSKFHRVI 91
+F I I G++ LF P+T +NF L +G G YK FHRV+
Sbjct: 12 CFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVV 71
Query: 92 KDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
KDFM+Q SIYG FEDE+F + H LSMAN GKDTNGSQFFITTK
Sbjct: 72 KDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTK 131
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
TP LDG HVVFG+VI+G ++V++IE+ +TD +P V I+ CG
Sbjct: 132 PTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCG 177
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 96/166 (57%), Gaps = 8/166 (4%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG--------YKGSKFHRVI 91
+F I I G++ LF P+T +NF L +G G YK FHRV+
Sbjct: 12 CFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVV 71
Query: 92 KDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
KDFM+Q SIYG FEDE+F + H LSMAN GKDTNGSQFFITTK
Sbjct: 72 KDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTK 131
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
TP LDG HVVFG+VI+G ++V++IE+ +TD +P V I+ CG
Sbjct: 132 PTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCG 177
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 140 bits (353), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 96/163 (58%), Gaps = 1/163 (0%)
Query: 36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
V V+F I + +G++ LF VP+T +NF L+ +G GYKGS FHR+I F
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFX 60
Query: 96 IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
Q SIYG+KFEDENF L H G G LS ANAG +TNGSQFFI T KT W
Sbjct: 61 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFICTAKTEW 120
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
LDG+HVVFGKV G +IV+ E + + + +TI DCG
Sbjct: 121 LDGKHVVFGKVKEGXNIVEAXERFGSR-NGKTSKKITIADCGQ 162
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 140 bits (352), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 88/139 (63%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXX 99
V+F I+IG + G+I + L VPRT +NF L G GY FHRVI FM Q
Sbjct: 13 VFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGG 72
Query: 100 XXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGR 159
SIYG KF+DENF+L H G G LSMAN+G +TNGSQFFI T K WLDG+
Sbjct: 73 DFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGK 132
Query: 160 HVVFGKVITGGDIVKKIES 178
HVVFG+V+ G ++VKK+ES
Sbjct: 133 HVVFGRVVDGQNVVKKMES 151
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 94/166 (56%), Gaps = 8/166 (4%)
Query: 39 IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG-------YKGSKFHRVI 91
+V+F I IG+ G+I + LF VP T +NF L +G G Y GS FHR+I
Sbjct: 21 VVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRII 80
Query: 92 KDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
FMIQ SIYG KF DENF +H LSMANAG +TNGSQFFITT
Sbjct: 81 PQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTV 140
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
PWLDG+HVVFGKV+ G ++VK IE + +P + V I G
Sbjct: 141 PCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQ-NGKPTKSVCITASG 185
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 100/177 (56%), Gaps = 17/177 (9%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG-------YKGSKFHRVIK 92
V+F I I G+I + L+ TVP+T +NF L +G+G YK S FHRVI
Sbjct: 10 VFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVIP 69
Query: 93 DFMIQXXXXXXXXXXXXASIYGDKFEDENFKLS---HYGSGWLSMANAGKDTNGSQFFIT 149
+FMIQ SIYG F DE+F H G G LSMANAG +TNGSQFFI
Sbjct: 70 NFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFIC 129
Query: 150 TKKTPWLDGRHVVFGKVITGGDIVKKIE---SSETDGRDRPVQGVTIVDCGHTPVEE 203
T TPWLDG+HVVFG+VI G D+VKK+E SS R R + + DCG ++
Sbjct: 130 TAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSGKTRSR----IVVSDCGEVAADK 182
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Query: 33 GPKVTD-IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVI 91
GP +T+ +V+F + +G+I + LF VPRT +NF L +G G+K S FHRVI
Sbjct: 1 GPHMTNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVI 60
Query: 92 KDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
DF+ Q SIYGDKFEDENF + H G G LSMAN G++TN SQF IT K
Sbjct: 61 PDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLK 120
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
K LD +HVVFG V G D VKKIES + + + +TI +CG
Sbjct: 121 KAEHLDFKHVVFGFVKDGMDTVKKIESFGSP-KGSVCRRITITECG 165
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 95/166 (57%), Gaps = 8/166 (4%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG--------YKGSKFHRVI 91
V+ + I G+I + L+ PRT NF+ L G G YKGS FHRVI
Sbjct: 9 VFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVI 68
Query: 92 KDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
K+FMIQ SIYG F+DE F + H +SMAN G +TNGSQFFITT
Sbjct: 69 KNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTT 128
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
P L+ HVVFGKV++G ++V KIE +T+ ++RP+ V I++CG
Sbjct: 129 PAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCG 174
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 95/148 (64%), Gaps = 5/148 (3%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXX 107
E ++G I + L+ K P+T +NF ELA+R Y G+KFHR+IKDFMIQ
Sbjct: 17 ETSMGIIVLELYWKHAPKTCKNFAELARRGY---YNGTKFHRIIKDFMIQGGDPTGTGRG 73
Query: 108 XXASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKV 166
ASIYG +FEDE + L G+G L+MANAG DTNGSQFF+T T WLDG+H +FG+V
Sbjct: 74 G-ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRV 132
Query: 167 ITGGDIVKKIESSETDGRDRPVQGVTIV 194
G +V ++ ET+ +DRPV V I+
Sbjct: 133 CQGIGMVNRVGMVETNSQDRPVDDVKII 160
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 95/148 (64%), Gaps = 5/148 (3%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXX 107
E ++G I + L+ K P+T +NF ELA+R Y G+KFHR+IKDFMIQ
Sbjct: 17 ETSMGIIVLELYWKHAPKTCKNFAELARRGY---YNGTKFHRIIKDFMIQGGDPTGTGRG 73
Query: 108 XXASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKV 166
ASIYG +FEDE + L G+G L+MANAG DTNGSQFF+T T WLDG+H +FG+V
Sbjct: 74 G-ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRV 132
Query: 167 ITGGDIVKKIESSETDGRDRPVQGVTIV 194
G +V ++ ET+ +DRPV V I+
Sbjct: 133 CQGIGMVNRVGMVETNSQDRPVDDVKII 160
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 95/148 (64%), Gaps = 5/148 (3%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXX 107
E ++G I + L+ K P+T +NF ELA+R Y G+KFHR+IKDFMIQ
Sbjct: 17 ETSMGIIVLELYWKHAPKTCKNFAELARRGY---YNGTKFHRIIKDFMIQGGDPTGTGRG 73
Query: 108 XXASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKV 166
ASIYG +FEDE + L G+G L+MANAG DTNGSQFF+T T WLDG+H +FG+V
Sbjct: 74 G-ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRV 132
Query: 167 ITGGDIVKKIESSETDGRDRPVQGVTIV 194
G +V ++ ET+ +DRPV V I+
Sbjct: 133 CQGIGMVNRVGMVETNSQDRPVDDVKII 160
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 88/164 (53%), Gaps = 7/164 (4%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELA------KRPEGQGYKGSKFHRVIKD 93
V+F I I N G+I LF PRT +NF L R + YK S FHR+I
Sbjct: 6 VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQ 65
Query: 94 FMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKT 153
FM Q SIYG F DENF + H G LSMANAG +TN SQFFIT
Sbjct: 66 FMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPC 125
Query: 154 PWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
PWLDG+HVVFGKVI G ++V+++E E + V I DCG
Sbjct: 126 PWLDGKHVVFGKVIEGMNVVREME-KEGAKSGYVKRSVVITDCG 168
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 99/167 (59%), Gaps = 8/167 (4%)
Query: 39 IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAK-----RPEGQGYKGSKFHRVIKD 93
+V+ I +G +GK + LF VP+T +NF + GYK + FHRVIK+
Sbjct: 61 VVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKE 120
Query: 94 FMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKT 153
FMIQ SIYG+KF+DENF + H G LSMAN+G +TNG QFFITTKK
Sbjct: 121 FMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKC 180
Query: 154 PWLDGRHVVFGKVITGGD--IVKKIES-SETDGRDRPVQGVTIVDCG 197
WLDG++VVFG++I ++KKIE+ S T +P + +V+CG
Sbjct: 181 EWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECG 227
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 87/164 (53%), Gaps = 7/164 (4%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELA------KRPEGQGYKGSKFHRVIKD 93
V+F I I N G+I LF PRT +NF L R + YK S FHR+I
Sbjct: 6 VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQ 65
Query: 94 FMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKT 153
FM Q SIYG F DENF + H G LSMANAG +TN SQF IT
Sbjct: 66 FMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLVPC 125
Query: 154 PWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
PWLDG+HVVFGKVI G ++V+++E E + V I DCG
Sbjct: 126 PWLDGKHVVFGKVIEGMNVVREME-KEGAKSGYVKRSVVITDCG 168
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 113 bits (283), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 84/146 (57%), Gaps = 5/146 (3%)
Query: 51 VGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXXXXA 110
+G I I LF K +TVQNF + Y FHRVIK FM+Q
Sbjct: 14 MGDIHISLFYKECKKTVQNF---SVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTGG-E 69
Query: 111 SIYGDKFEDENF-KLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITG 169
SI+G++FEDE F L+H +SMAN G +TNGSQFFITT PWLD +H VFGKV G
Sbjct: 70 SIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQG 129
Query: 170 GDIVKKIESSETDGRDRPVQGVTIVD 195
IV IE TD RD+P++ + I++
Sbjct: 130 SKIVLDIEKVRTDKRDKPLEDIKILN 155
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 107 bits (267), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 96/168 (57%), Gaps = 12/168 (7%)
Query: 31 AKGPK-VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHR 89
A+GPK V+D +G+ I LF P+TV+NF ++ Y G FHR
Sbjct: 14 AEGPKRVSDSAIIHTSMGD-----IHTKLFPVECPKTVENFCVHSRNGY---YNGHTFHR 65
Query: 90 VIKDFMIQXXXXXXXXXXXXASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFI 148
+IK FMIQ SI+G +FEDE + L H LSMANAG +TNGSQFFI
Sbjct: 66 IIKGFMIQTGDPTGTGMGG-ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFI 124
Query: 149 TTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGR-DRPVQGVTIVD 195
T TPWLD +H VFG+V G ++V++I + + + + D+P + V+I++
Sbjct: 125 TVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 172
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 81/160 (50%), Gaps = 17/160 (10%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKR------------PEGQGYKGSKFHRVIKDFM 95
N G I+I LFG P+TV NF+ LA+ P G Y G+ FHRVI+ FM
Sbjct: 29 HTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFM 88
Query: 96 IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
IQ + D+F E L L+MANAG TNGSQFFIT KTP
Sbjct: 89 IQGGDPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGKTPH 145
Query: 156 LDGRHVVFGKVITGGD--IVKKIESSETDGRDRPVQGVTI 193
L+ RH +FG+VI +V+ I + TDG DRP V I
Sbjct: 146 LNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 185
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 87/149 (58%), Gaps = 8/149 (5%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXX 107
N G + + L P+T +NFI L K+ Y G+ FHR I++F+IQ
Sbjct: 25 HTNKGDLNLELHCDLTPKTCENFIRLCKK---HYYDGTIFHRSIRNFVIQGGDPTGTGTG 81
Query: 108 XXASIYGDKFEDENFK--LSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGK 165
S +G F+DE F+ LSH G G LSMAN+G ++N SQFFIT + +LD +H +FG+
Sbjct: 82 G-ESYWGKPFKDE-FRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGR 139
Query: 166 VITGGDIVKKIESSETDGR-DRPVQGVTI 193
V+ G D++ +E+ E+D + DRP + + I
Sbjct: 140 VVGGFDVLTAMENVESDPKTDRPKEEIRI 168
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 80/147 (54%), Gaps = 5/147 (3%)
Query: 49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXXX 108
N+G E+ L+ P+T NF L E Y + FHRVI +F+IQ
Sbjct: 45 TNLGDFEVELYWYHSPKTCLNFYTLC---EMGFYDNTIFHRVIPNFVIQGGDPTGTGKGG 101
Query: 109 XASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVI 167
SIYG+ FEDE N +L H G+G LSM+N G +TN SQFFIT P LDG+H +F +V
Sbjct: 102 -KSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVS 160
Query: 168 TGGDIVKKIESSETDGRDRPVQGVTIV 194
++ I S +T ++P+ + I+
Sbjct: 161 KNMTCIENIASVQTTATNKPIFDLKIL 187
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 83/150 (55%), Gaps = 6/150 (4%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXX 107
+VG I+I +F + P+T +NF+ L Y G FHR IK FM+Q
Sbjct: 6 HTDVGDIKIEVFCERTPKTCENFLALCA---SNYYNGCIFHRNIKGFMVQTGDPTGTGRG 62
Query: 108 XXASIYGDKFEDENFK-LSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKV 166
SI+G KFEDE + L H G +SMAN G +TNGSQFFIT K P LD ++ VFGKV
Sbjct: 63 GN-SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKV 121
Query: 167 ITGGDIVKKIESSETDGRD-RPVQGVTIVD 195
I G + + ++E + + RP+ V I D
Sbjct: 122 IDGLETLDELEKLPVNEKTYRPLNDVHIKD 151
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 83/150 (55%), Gaps = 6/150 (4%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXX 107
+VG I+I +F + P+T +NF+ L Y G FHR IK FM+Q
Sbjct: 12 HTDVGDIKIEVFCERTPKTCENFLALCA---SNYYNGCIFHRNIKGFMVQTGDPTGTGRG 68
Query: 108 XXASIYGDKFEDENFK-LSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKV 166
SI+G KFEDE + L H G +SMAN G +TNGSQFFIT K P LD ++ VFGKV
Sbjct: 69 GN-SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKV 127
Query: 167 ITGGDIVKKIESSETDGRD-RPVQGVTIVD 195
I G + + ++E + + RP+ V I D
Sbjct: 128 IDGLETLDELEKLPVNEKTYRPLNDVHIKD 157
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 9/161 (5%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXX 99
++FQ N G ++ LF P+ +NF+ L+ YK + FH+ IK F+IQ
Sbjct: 14 LYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGY---YKNTIFHKNIKGFIIQGG 70
Query: 100 XXXXXXXXXXASIYGDKFEDENF-KLSHYGSGWLSMANAGK----DTNGSQFFITTKKTP 154
SIYG F+DE + +L + G LSMA+ G +TNGSQFFIT P
Sbjct: 71 DPTGTGKGG-ESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLP 129
Query: 155 WLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVD 195
L+G +V+FGK+I G + + +E+ +D +P+ + I D
Sbjct: 130 QLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKD 170
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 74/149 (49%), Gaps = 8/149 (5%)
Query: 51 VGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXXXXA 110
G I+I L+ K P+ +NFI+L Y + FHRV+ F++Q
Sbjct: 33 AGDIDIELWSKEAPKACRNFIQLCLEAY---YDNTIFHRVVPGFIVQGGDPTGTGSGG-E 88
Query: 111 SIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITG 169
SIYG F+DE + +L G ++MANAG NGSQFF T + L+ +H +FGKV TG
Sbjct: 89 SIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKV-TG 147
Query: 170 GDIVKKIESSETDGRD--RPVQGVTIVDC 196
+ + SE D D RP I C
Sbjct: 148 DTVYNMLRLSEVDIDDDERPHNPHKIKSC 176
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 70/142 (49%), Gaps = 15/142 (10%)
Query: 52 GKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXXXXAS 111
G + I L PR +F+ L + + + FHR I++FMIQ
Sbjct: 16 GSLNIELHADMAPRACDSFLRLCAV---KYFDDTIFHRCIRNFMIQGGRAELRQPSKKKE 72
Query: 112 IY-----------GDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGR 159
+ G FEDE + +L H G G LSMAN GK +N S+FFIT K L+ +
Sbjct: 73 VQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNK 132
Query: 160 HVVFGKVITGGDIVKKIESSET 181
H +FG+V+ G D++++ E ET
Sbjct: 133 HTIFGRVVGGLDVLRQWEKLET 154
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 24/195 (12%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXX 107
++G +++ L+ + P +NF++L EG Y + FHRV+KDF++Q
Sbjct: 27 HTSLGDLDVELWARECPLACRNFVQLCL--EGY-YVNTIFHRVVKDFIVQGGDPTGTGRG 83
Query: 108 XXASIY-GDKFEDENF-KLSHYGSGWLSMANAGKD--------------TNGSQFFITTK 151
+ + G F+ E +L G + +AN G+ TNG+QFFIT
Sbjct: 84 GADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLA 143
Query: 152 KTPWLDGRHVVFGKVITGGDI--VKKIESSETDGRDRPVQGVTI--VDCGHTPVEEPFSD 207
+ L+ + +FGKV TG + + K E DRP+ I VD P E+
Sbjct: 144 RADVLNNAYTLFGKV-TGHTLYNLMKFNDLEVGKEDRPMTPPFIKSVDVLWNPFEDLVPR 202
Query: 208 VVKKIESSETDGRDR 222
+ ++ D R R
Sbjct: 203 RLPDAPPAQKDERKR 217
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 50 NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXXXX 109
+ G IE+ L + P +VQNF++ Y + FHRVI FMIQ
Sbjct: 12 SAGNIELELDKQKAPVSVQNFVDYV---NSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKK 68
Query: 110 ASIYGDKFEDENFKLSHYGSGWLSMA-NAGKDTNGSQFFITTKKTPWLD-GR----HVVF 163
+ D + + G ++MA A KD+ SQFFI +LD G+ + VF
Sbjct: 69 PNPPIKNEADNGLRNTR---GTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVF 125
Query: 164 GKVITGGDIVKKIESSET 181
GKV+ G D+ KI T
Sbjct: 126 GKVVKGMDVADKISQVPT 143
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 50 NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXXXX 109
+ G IE+ L + P +VQNF++ Y + FHRVI FMIQ
Sbjct: 12 SAGNIELELDKQKAPVSVQNFVDYV---NSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKK 68
Query: 110 ASIYGDKFEDENFKLSHYGSGWLSMA-NAGKDTNGSQFFITTKKTPWLD-GR----HVVF 163
+ D + + G ++MA A KD+ SQFFI +LD G+ + VF
Sbjct: 69 PNPPIKNEADNGLRNTR---GTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVF 125
Query: 164 GKVITGGDIVKKIESSET 181
GKV+ G D+ KI T
Sbjct: 126 GKVVKGMDVADKISQVPT 143
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 65/158 (41%), Gaps = 17/158 (10%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXX 107
+ N G I + LF P T NF + K +G Y G+ FHRVI FMIQ
Sbjct: 5 QTNHGTITLKLFADKAPETAANFEQYVK--DGH-YDGTIFHRVIDGFMIQGGGFEPGMKQ 61
Query: 108 XXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGR-------- 159
S + N LS+ + +QFFI K +LD
Sbjct: 62 K--STRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNAFLDHTAPTAHGWG 119
Query: 160 HVVFGKVITGGDIVKKIESSETDGR----DRPVQGVTI 193
+ VFG+V+ G D+V +I+S T R D PV V I
Sbjct: 120 YAVFGEVVEGTDVVDRIKSVATGSRAGHGDVPVDDVII 157
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 15/143 (10%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXX 107
N G I++ L P+TV+NF+ K+ Y G+ FHRVI FMIQ
Sbjct: 9 HTNHGVIKLELDEAKAPKTVENFLNYVKKGH---YDGTIFHRVINGFMIQGGGFEPGLKQ 65
Query: 108 XXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNG-SQFFITTKKTPWLDGR------- 159
+ K Y ++MA + +QFFI +L+
Sbjct: 66 KPTDAPIANEANNGLKNDTY---TIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGW 122
Query: 160 -HVVFGKVITGGDIVKKIESSET 181
+ VFGKV+ G DIV KI++ +T
Sbjct: 123 GYAVFGKVVEGQDIVDKIKAVKT 145
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 71/190 (37%), Gaps = 34/190 (17%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELA-----------------KRPEGQGY 82
V+ I + +G+++I LF P V+NF++L R + Y
Sbjct: 17 VYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTY 76
Query: 83 KGSKFHRVIKDFMIQXXXXXXXXXXXXASIYGDK-----FEDENFKLSHYGSGWLSMA-- 135
+G KFH V+ + I ++Y D+ F D + H G LS+
Sbjct: 77 EGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGD--YFYPHESKGLLSLVPY 134
Query: 136 --NAGKDTNGSQFFIT------TKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRP 187
+G S F IT + LD VV G+V G D++ KI S R
Sbjct: 135 TDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGRK 194
Query: 188 VQGVTIVDCG 197
+I CG
Sbjct: 195 YPTFSIGKCG 204
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 59/143 (41%), Gaps = 15/143 (10%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXX 107
N G I I F P TV+NF++ + EG Y + FHRVI FMIQ
Sbjct: 5 HTNHGDIVIKTFDDKAPETVKNFLDYCR--EGF-YNNTIFHRVINGFMIQGGGFEPGMKQ 61
Query: 108 XXASIYGDKFEDENFKLSHYGSGWLSMANA-GKDTNGSQFFITTKKTPWLDGR------- 159
+ ++E G L+MA + +QFFI +L+
Sbjct: 62 KATK---EPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGW 118
Query: 160 -HVVFGKVITGGDIVKKIESSET 181
+ VF +V+ G D+V KI+ T
Sbjct: 119 GYCVFAEVVDGMDVVDKIKGVAT 141
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 58/143 (40%), Gaps = 15/143 (10%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXX 107
N G I I F P TV+NF++ + EG Y + FHRVI FMIQ
Sbjct: 5 HTNHGDIVIKTFDDKAPETVKNFLDYCR--EGF-YNNTIFHRVINGFMIQGGGFEPGMKQ 61
Query: 108 XXASIYGDKFEDENFKLSHYGSGWLSMANA-GKDTNGSQFFITTKKTPWLDGR------- 159
+ ++E G L+MA + +QFFI +L+
Sbjct: 62 KATK---EPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGW 118
Query: 160 -HVVFGKVITGGDIVKKIESSET 181
+ VF +V+ G D V KI+ T
Sbjct: 119 GYCVFAEVVDGMDEVDKIKGVAT 141
>pdb|1NMB|N Chain N, The Structure Of A Complex Between The Nc10 Antibody And
Influenza Virus Neuraminidase And Comparison With The
Overlapping Binding Site Of The Nc41 Antibody
Length = 470
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 138 GKDTNGSQFFITTKKTPWLDGRHVVFGKVIT----GGDIVKKIESSETDGRDRPVQGVTI 193
G + NG + F +LDG + G+ I+ G + K+ ++ TD R +P QG TI
Sbjct: 344 GNNNNGVKGF------SYLDGGNTWLGRTISIASRSGYEMLKVPNALTDDRSKPTQGQTI 397
Query: 194 V 194
V
Sbjct: 398 V 398
>pdb|2B8H|A Chain A, ANWSWHALEMAINE184 (H1N9) REASSORTANT INFLUENZA VIRUS
Neuraminidase
pdb|2B8H|B Chain B, ANWSWHALEMAINE184 (H1N9) REASSORTANT INFLUENZA VIRUS
Neuraminidase
pdb|2B8H|C Chain C, ANWSWHALEMAINE184 (H1N9) REASSORTANT INFLUENZA VIRUS
Neuraminidase
pdb|2B8H|D Chain D, ANWSWHALEMAINE184 (H1N9) REASSORTANT INFLUENZA VIRUS
Neuraminidase
Length = 388
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 138 GKDTNGSQFFITTKKTPWLDGRHVVFGKVIT----GGDIVKKIESSETDGRDRPVQGVTI 193
G + NG + F +LDG + G+ I+ G + K+ ++ TD R +P QG TI
Sbjct: 262 GNNNNGVKGF------SYLDGGNTWLGRTISVASRSGYEMLKVPNALTDDRSKPTQGQTI 315
Query: 194 V 194
V
Sbjct: 316 V 316
>pdb|1NMA|N Chain N, N9 Neuraminidase Complexes With Antibodies Nc41 And Nc10:
Empirical Free-Energy Calculations Capture Specificity
Trends Observed With Mutant Binding Data
Length = 388
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 138 GKDTNGSQFFITTKKTPWLDGRHVVFGKVIT----GGDIVKKIESSETDGRDRPVQGVTI 193
G + NG + F +LDG + G+ I+ G + K+ ++ TD + RP QG TI
Sbjct: 262 GNNNNGVKGF------SYLDGGNTWLGRTISIASRSGYEMLKVPNALTDDKSRPTQGQTI 315
Query: 194 V 194
V
Sbjct: 316 V 316
>pdb|1NCD|N Chain N, Refined Crystal Structure Of The Influenza Virus N9
Neuraminidase-Nc41 Fab Complex
Length = 389
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 138 GKDTNGSQFFITTKKTPWLDGRHVVFGKVIT----GGDIVKKIESSETDGRDRPVQGVTI 193
G + NG + F +LDG + G+ I+ G + K+ ++ TD R +P QG TI
Sbjct: 263 GNNNNGVKGF------SYLDGGNTWLGRTISIASRSGYEMLKVPNALTDDRSKPTQGQTI 316
Query: 194 V 194
V
Sbjct: 317 V 317
>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri
Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms
pdb|3VDZ|B Chain B, Tailoring Encodable Lanthanide-Binding Tags As Mri
Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms
Length = 111
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 128 GSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHV----VFGKVITGGDIVKKIESSET 181
G+G++ N G +G + +I T +DG + +F K +TG I ++E S+T
Sbjct: 1 GAGYIDTDNDGS-IDGDELYIDTDNDGSIDGDELLAMQIFVKTLTGKTITLEVEPSDT 57
>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide-
Binding Tag
Length = 111
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 128 GSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHV----VFGKVITGGDIVKKIESSET 181
G G++ N G G + +I T W++G + +F K +TG I ++E S+T
Sbjct: 1 GPGYIDTNNDGW-IEGDELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDT 57
>pdb|1INY|A Chain A, A Sialic Acid Derived Phosphonate Analog Inhibits
Different Strains Of Influenza Virus Neuraminidase With
Different Efficiencies
Length = 388
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 138 GKDTNGSQFFITTKKTPWLDGRHVVFGKVIT----GGDIVKKIESSETDGRDRPVQGVTI 193
G + NG + F +LDG + G+ I+ G + K+ ++ TD + +P QG TI
Sbjct: 262 GNNNNGVKGF------SYLDGVNTWLGRTISIALRSGYEMLKVPNALTDDKSKPTQGQTI 315
Query: 194 V 194
V
Sbjct: 316 V 316
>pdb|1L7H|A Chain A, Crystal Structure Of R292k Mutant Influenza Virus
Neuraminidase In Complex With Bcx-1812
pdb|2QWA|A Chain A, The X-ray Structure Of A Drug Resistant Variant R292k Of
Tern N9 Influenza Virus Neuraminidase
pdb|2QWB|A Chain A, The X-ray Structure Of A Complex Of Sialic Acid And A Drug
Resistant Variant R292k Of Tern N9 Influenza Virus
Neuraminidase
pdb|2QWC|A Chain A, The X-Ray Structure Of A Complex Of Neu5ac2en And A Drug
Resistant Variant R292k Of Tern N9 Influenza Virus
Neuraminidase
pdb|2QWD|A Chain A, The X-Ray Structure Of A Complex Of 4-Amino-Neu5ac2en And
A Drug Resistant Variant R292k Of Tern N9 Influenza
Virus Neuraminidase
pdb|2QWE|A Chain A, The X-ray Structure Of A Complex Of 4-guanidino-neu5ac2en
And A Drug Resistant Variant R292k Of Tern N9 Influenza
Virus Neuraminidase
pdb|2QWF|A Chain A, The X-Ray Structure Of A Complex Of
N-Acetyl-4-Guanidino-6-
Methyl(Propyl)carboxamide-4,
5-Dihydro-2h-Pyran-2-Carboxylic Acid And A Drug
Resistant Variant R292k Of Tern N9 Influenza Virus
Neuraminidase
pdb|2QWG|A Chain A, The X-Ray Structure Of A Complex Of 5-N-Acetyl-4-Amino-6-
Diethylcarboxamide-4,5-Dihydro-2h-Pyran-2-Carboxylic
Acid And A Drug Resistant Variant R292k Of Tern N9
Influenza Virus Neuraminidase
pdb|2QWH|A Chain A, The X-Ray Structure Of A Complex Of
5-N-Acetyl-5-Amino-3-(1-
Ethylpropoxy)-1-Cyclohexene-1-Carboxylic Acid (Gs4071)
And A Drug Resistant Variant R292k Of Tern N9 Influenza
Virus Neuraminidase
Length = 388
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 138 GKDTNGSQFFITTKKTPWLDGRHVVFGKVIT----GGDIVKKIESSETDGRDRPVQGVTI 193
G + NG + F +LDG + G+ I+ G + K+ ++ TD + +P QG TI
Sbjct: 262 GNNNNGVKGF------SYLDGVNTWLGRTISIASRSGYEMLKVPNALTDDKSKPTQGQTI 315
Query: 194 V 194
V
Sbjct: 316 V 316
>pdb|6NN9|A Chain A, Refined Atomic Structures Of N9 Subtype Influenza Virus
Neuraminidase And Escape Mutants
Length = 388
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 138 GKDTNGSQFFITTKKTPWLDGRHVVFGKVIT----GGDIVKKIESSETDGRDRPVQGVTI 193
G + NG + F +LDG + G+ I+ G + K+ ++ TD + +P QG TI
Sbjct: 262 GNNNNGVKGF------SYLDGVNTWLGRTISIASRSGYEMLKVPNALTDDKSKPTQGQTI 315
Query: 194 V 194
V
Sbjct: 316 V 316
>pdb|1A14|N Chain N, Complex Between Nc10 Anti-Influenza Virus Neuraminidase
Single Chain Antibody With A 5 Residue Linker And
Influenza Virus Neuraminidase
pdb|1NMC|N Chain N, Complex Between Nc10 Anti-Influenza Virus Neuraminidase
Single Chain Antibody With A 15 Residue Linker And
Influenza Virus Neuraminidase
pdb|1NMC|A Chain A, Complex Between Nc10 Anti-Influenza Virus Neuraminidase
Single Chain Antibody With A 15 Residue Linker And
Influenza Virus Neuraminidase
pdb|1F8B|A Chain A, Native Influenza Virus Neuraminidase In Complex With
Neu5ac2en
pdb|1F8C|A Chain A, Native Influenza Neuraminidase In Complex With
4-Amino-2-Deoxy-2,3- Dehydro-N-Neuraminic Acid
pdb|1F8D|A Chain A, Native Influenza Neuraminidase In Complex With
9-Amino-2-Deoxy-2,3- Dehydro-N-Neuraminic Acid
pdb|1F8E|A Chain A, Native Influenza Neuraminidase In Complex With
4,9-diamino-2-deoxy-2, 3-dehydro-n-acetyl-neuraminic
Acid
pdb|1L7F|A Chain A, Crystal Structure Of Influenza Virus Neuraminidase In
Complex With Bcx-1812
pdb|2C4A|A Chain A, Structure Of Neuraminidase Subtype N9 Complexed With 30 Mm
Sialic Acid (Nana, Neu5ac), Crystal Soaked For 3 Hours
At 291 K.
pdb|2C4L|A Chain A, Structure Of Neuraminidase Subtype N9 Complexed With 30 Mm
Sialic Acid (Nana, Neu5ac), Crystal Soaked For 24 Hours
At 291 K And Finally Backsoaked For 30 Min In A
Cryoprotectant Solution Which Did Not Contain Neu5ac
pdb|1BJI|A Chain A, The X-Ray Structure Of A Complex Of Tern N9 Influenza
Virus Neuraminidase Complexed With The Glaxo
6-Carboxamide Sialic Acid Analogue Gr217029
pdb|1MWE|A Chain A, The X-Ray Structure Of A Complex Of Tern N9 Influenza
Virus Neuraminidase Complexed With Sialic Acid At 4
Degrees C Revealing A Second Sialic Acid Binding Site
pdb|2QWI|A Chain A, The X-ray Structure Of A Complex Of
N-acetyl-4-guanidino-6-
Methyl(propyl)carboxamide-4,
5-dihydro-2h-pyran-2-carboxylic Acid And Wildtype Tern
N9 Influenza Virus Neuraminidase
pdb|2QWJ|A Chain A, The X-ray Structure Of A Complex Of 5-n-acetyl-4-amino-6-
Diethylcarboxamide-4,5-dihydro-2h-pyran-2-carboxylic
Acid And A Drug Resistant Variant R292k Of Tern N9
Influenza Virus Neuraminidase
pdb|2QWK|A Chain A, The X-Ray Structure Of A Complex Of
5-N-Acetyl-5-Amino-3-(1-
Ethylpropoxy)-1-Cyclohexene-1-Carboxylic Acid (Gs4071)
And Wildtype Tern N9 Influenza Virus Neuraminidase
pdb|7NN9|A Chain A, Native Influenza Virus Neuraminidase Subtype N9 (Tern)
pdb|1NNC|A Chain A, Influenza Virus Neuraminidase Subtype N9 (Tern) Complexed
With 4- Guanidino-Neu5ac2en Inhibitor
Length = 388
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 138 GKDTNGSQFFITTKKTPWLDGRHVVFGKVIT----GGDIVKKIESSETDGRDRPVQGVTI 193
G + NG + F +LDG + G+ I+ G + K+ ++ TD + +P QG TI
Sbjct: 262 GNNNNGVKGF------SYLDGVNTWLGRTISIASRSGYEMLKVPNALTDDKSKPTQGQTI 315
Query: 194 V 194
V
Sbjct: 316 V 316
>pdb|1NCC|N Chain N, Crystal Structures Of Two Mutant Neuraminidase-Antibody
Complexes With Amino Acid Substitutions In The Interface
Length = 389
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 138 GKDTNGSQFFITTKKTPWLDGRHVVFGKVIT----GGDIVKKIESSETDGRDRPVQGVTI 193
G + NG + F +LDG + G+ I+ G + K+ ++ TD + +P QG TI
Sbjct: 263 GNNNNGVKGF------SYLDGVNTWLGRTISRASRSGYEMLKVPNALTDDKSKPTQGQTI 316
Query: 194 V 194
V
Sbjct: 317 V 317
>pdb|1XOE|A Chain A, N9 Tern Influenza Neuraminidase Complexed With
(2r,4r,5r)-5-(1-
Acetylamino-3-Methyl-Butyl-Pyrrolidine-2,
4-Dicarobyxylic Acid 4- Methyl Esterdase Complexed With
pdb|1XOG|A Chain A, N9 Tern Influenza Neuraminidase Complexed With A
2,5-Disubstituted Tetrahydrofuran-5-Carboxylic Acid
pdb|1NNB|A Chain A, Three-Dimensional Structure Of Influenza A N9
Neuraminidase And Its Complex With The Inhibitor 2-Deoxy
2,3-Dehydro-N-Acetyl Neuraminic Acid
pdb|1NNA|A Chain A, Three-dimensional Structure Of Influenza A N9
Neuraminidase And Its Complex With The Inhibitor 2-deoxy
2,3-dehydro-n-acetyl Neuraminic Acid
Length = 387
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 138 GKDTNGSQFFITTKKTPWLDGRHVVFGKVIT----GGDIVKKIESSETDGRDRPVQGVTI 193
G + NG + F +LDG + G+ I+ G + K+ ++ TD + +P QG TI
Sbjct: 261 GNNNNGVKGF------SYLDGVNTWLGRTISIASRSGYEMLKVPNALTDDKSKPTQGQTI 314
Query: 194 V 194
V
Sbjct: 315 V 315
>pdb|4NN9|A Chain A, Refined Atomic Structures Of N9 Subtype Influenza Virus
Neuraminidase And Escape Mutants
Length = 388
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 138 GKDTNGSQFFITTKKTPWLDGRHVVFGKVIT----GGDIVKKIESSETDGRDRPVQGVTI 193
G + NG + F +LDG + G+ I+ G + K+ ++ TD + +P QG TI
Sbjct: 262 GNNNNGVKGF------SYLDGVNTWLGRTISRASRSGYEMLKVPNALTDDKSKPTQGQTI 315
Query: 194 V 194
V
Sbjct: 316 V 316
>pdb|1NCA|N Chain N, Refined Crystal Structure Of The Influenza Virus N9
Neuraminidase-Nc41 Fab Complex
pdb|4DGR|A Chain A, Influenza Subtype 9 Neuraminidase Benzoic Acid Inhibitor
Complex
Length = 389
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 138 GKDTNGSQFFITTKKTPWLDGRHVVFGKVIT----GGDIVKKIESSETDGRDRPVQGVTI 193
G + NG + F +LDG + G+ I+ G + K+ ++ TD + +P QG TI
Sbjct: 263 GNNNNGVKGF------SYLDGVNTWLGRTISIASRSGYEMLKVPNALTDDKSKPTQGQTI 316
Query: 194 V 194
V
Sbjct: 317 V 317
>pdb|5NN9|A Chain A, Refined Atomic Structures Of N9 Subtype Influenza Virus
Neuraminidase And Escape Mutants
Length = 388
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 138 GKDTNGSQFFITTKKTPWLDGRHVVFGKVIT----GGDIVKKIESSETDGRDRPVQGVTI 193
G + NG + F +LDG + G+ I+ G + K+ ++ TD + +P QG TI
Sbjct: 262 GNNNNGVKGF------SYLDGVNTWLGRTISIDSRSGYEMLKVPNALTDDKSKPTQGQTI 315
Query: 194 V 194
V
Sbjct: 316 V 316
>pdb|3NN9|A Chain A, Refined Atomic Structures Of N9 Subtype Influenza Virus
Neuraminidase And Escape Mutants
Length = 388
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 138 GKDTNGSQFFITTKKTPWLDGRHVVFGKVIT----GGDIVKKIESSETDGRDRPVQGVTI 193
G + NG + F +LDG + G+ I+ G + K+ ++ TD + +P QG TI
Sbjct: 262 GNNNNGVKGF------SYLDGVNTWLGRTISIASRSGYEMLKVPNALTDDKSKPTQGQTI 315
Query: 194 V 194
V
Sbjct: 316 V 316
>pdb|1NCB|N Chain N, Crystal Structures Of Two Mutant Neuraminidase-Antibody
Complexes With Amino Acid Substitutions In The Interface
Length = 389
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 138 GKDTNGSQFFITTKKTPWLDGRHVVFGKVIT----GGDIVKKIESSETDGRDRPVQGVTI 193
G + NG + F +LDG + G+ I+ G + K+ ++ TD + +P QG TI
Sbjct: 263 GNNNNGVKGF------SYLDGVNTWLGRTISIASRSGYEMLKVPNALTDDKSKPTQGQTI 316
Query: 194 V 194
V
Sbjct: 317 V 317
>pdb|1L7G|A Chain A, Crystal Structure Of E119g Mutant Influenza Virus
Neuraminidase In Complex With Bcx-1812
Length = 388
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 138 GKDTNGSQFFITTKKTPWLDGRHVVFGKVIT----GGDIVKKIESSETDGRDRPVQGVTI 193
G + NG + F +LDG + G+ I+ G + K+ ++ TD + +P QG TI
Sbjct: 262 GNNNNGVKGF------SYLDGVNTWLGRTISIASRSGYEMLKVPNALTDDKSKPTQGQTI 315
Query: 194 V 194
V
Sbjct: 316 V 316
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,399,703
Number of Sequences: 62578
Number of extensions: 306897
Number of successful extensions: 748
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 577
Number of HSP's gapped (non-prelim): 134
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)