Query psy10359
Match_columns 249
No_of_seqs 224 out of 1437
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 15:53:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10359.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10359hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0880|consensus 100.0 2.3E-61 4.9E-66 392.7 18.1 175 29-203 31-206 (217)
2 KOG0546|consensus 100.0 2.8E-57 6.1E-62 399.2 15.7 167 36-202 7-181 (372)
3 KOG0879|consensus 100.0 1.2E-51 2.6E-56 317.1 13.0 165 34-198 7-176 (177)
4 cd01926 cyclophilin_ABH_like c 100.0 7.3E-48 1.6E-52 315.7 19.6 159 38-197 1-164 (164)
5 PTZ00221 cyclophilin; Provisio 100.0 1.9E-47 4E-52 329.0 20.8 169 33-205 48-225 (249)
6 PLN03149 peptidyl-prolyl isome 100.0 4.4E-47 9.5E-52 316.4 19.0 163 37-199 18-186 (186)
7 KOG0111|consensus 100.0 2.5E-48 5.4E-53 321.3 10.8 166 33-199 132-297 (298)
8 PTZ00060 cyclophilin; Provisio 100.0 1.2E-46 2.5E-51 313.4 20.2 161 37-199 15-182 (183)
9 KOG0881|consensus 100.0 7.6E-48 1.6E-52 292.9 8.8 151 38-197 10-161 (164)
10 cd01923 cyclophilin_RING cyclo 100.0 7.7E-46 1.7E-50 302.2 18.7 152 49-206 6-158 (159)
11 cd01921 cyclophilin_RRM cyclop 100.0 6.1E-45 1.3E-49 298.9 18.0 154 48-207 3-165 (166)
12 COG0652 PpiB Peptidyl-prolyl c 100.0 6.6E-45 1.4E-49 293.1 16.1 145 48-198 5-156 (158)
13 cd01928 Cyclophilin_PPIL3_like 100.0 2.3E-44 5E-49 291.7 18.2 145 49-197 7-152 (153)
14 cd01925 cyclophilin_CeCYP16-li 100.0 3.9E-44 8.5E-49 295.4 19.4 168 34-212 2-171 (171)
15 KOG0883|consensus 100.0 1.8E-45 3.8E-50 325.1 12.0 173 35-216 273-446 (518)
16 cd01927 cyclophilin_WD40 cyclo 100.0 2.3E-44 5.1E-49 290.2 17.3 144 48-195 3-147 (148)
17 PRK10903 peptidyl-prolyl cis-t 100.0 2.4E-43 5.1E-48 294.8 21.0 152 37-199 28-189 (190)
18 cd01922 cyclophilin_SpCYP2_lik 100.0 1.1E-43 2.4E-48 285.6 16.6 142 49-195 4-146 (146)
19 KOG0882|consensus 100.0 1E-42 2.2E-47 312.8 12.7 153 36-197 403-556 (558)
20 PRK10791 peptidyl-prolyl cis-t 100.0 3.5E-40 7.5E-45 269.9 18.0 145 49-199 6-163 (164)
21 KOG0884|consensus 100.0 5.8E-41 1.3E-45 253.9 12.3 152 49-206 7-160 (161)
22 cd01920 cyclophilin_EcCYP_like 100.0 1.1E-39 2.4E-44 264.9 16.6 141 49-195 4-154 (155)
23 KOG0865|consensus 100.0 1.5E-40 3.3E-45 269.8 9.9 163 36-199 2-167 (167)
24 KOG0885|consensus 100.0 7.2E-40 1.6E-44 288.4 13.8 196 31-237 6-211 (439)
25 cd00317 cyclophilin cyclophili 100.0 2.6E-38 5.7E-43 254.1 16.8 142 49-195 4-146 (146)
26 PF00160 Pro_isomerase: Cyclop 100.0 3.2E-38 6.9E-43 255.9 17.1 150 41-198 1-155 (155)
27 KOG0415|consensus 100.0 3.5E-36 7.7E-41 263.5 14.3 163 49-217 7-178 (479)
28 cd01924 cyclophilin_TLP40_like 100.0 6.6E-36 1.4E-40 247.2 13.9 129 48-179 3-165 (176)
29 KOG0880|consensus 98.2 8.5E-07 1.8E-11 73.4 2.2 43 206-248 173-215 (217)
30 KOG0882|consensus 97.6 6.4E-05 1.4E-09 69.4 4.4 145 49-197 105-260 (558)
31 KOG0546|consensus 97.1 0.00037 8.1E-09 62.9 2.9 35 206-240 149-183 (372)
32 TIGR03268 methan_mark_3 putati 96.6 0.0085 1.9E-07 56.4 8.2 102 53-178 202-303 (503)
33 PRK00969 hypothetical protein; 96.6 0.0079 1.7E-07 56.8 7.8 102 53-178 205-306 (508)
34 TIGR03268 methan_mark_3 putati 95.8 0.092 2E-06 49.7 10.4 115 52-179 375-496 (503)
35 COG4070 Predicted peptidyl-pro 95.8 0.02 4.4E-07 52.4 5.7 99 53-178 204-305 (512)
36 PRK00969 hypothetical protein; 95.0 0.23 5E-06 47.1 10.3 114 52-179 378-498 (508)
37 KOG0879|consensus 94.7 0.026 5.6E-07 44.4 2.6 30 206-235 148-177 (177)
38 PLN03149 peptidyl-prolyl isome 94.3 0.033 7.1E-07 46.5 2.7 30 206-235 157-186 (186)
39 COG4070 Predicted peptidyl-pro 93.8 0.22 4.8E-06 45.9 6.9 24 53-76 377-400 (512)
40 PF12903 DUF3830: Protein of u 93.2 0.29 6.3E-06 39.2 6.1 106 53-178 9-130 (147)
41 PTZ00221 cyclophilin; Provisio 92.6 0.1 2.2E-06 45.5 2.9 31 206-236 190-220 (249)
42 cd01926 cyclophilin_ABH_like c 90.8 0.2 4.4E-06 40.8 2.7 27 206-233 138-164 (164)
43 PTZ00060 cyclophilin; Provisio 89.6 0.24 5.2E-06 41.2 2.3 29 206-235 154-182 (183)
44 KOG0111|consensus 89.0 0.29 6.4E-06 41.7 2.3 29 206-235 269-297 (298)
45 cd01921 cyclophilin_RRM cyclop 87.4 0.52 1.1E-05 38.4 2.8 31 206-236 130-160 (166)
46 cd01923 cyclophilin_RING cyclo 84.8 0.8 1.7E-05 37.1 2.6 31 206-236 124-154 (159)
47 PRK10903 peptidyl-prolyl cis-t 82.3 0.99 2.1E-05 37.8 2.3 31 206-236 156-190 (190)
48 KOG0881|consensus 81.6 1.2 2.6E-05 34.8 2.3 27 207-233 135-161 (164)
49 PF00160 Pro_isomerase: Cyclop 73.1 2.1 4.6E-05 34.0 1.6 27 206-234 129-155 (155)
50 cd01928 Cyclophilin_PPIL3_like 71.3 3.6 7.9E-05 33.0 2.6 27 206-232 125-151 (153)
51 PF15284 PAGK: Phage-encoded v 70.2 7.8 0.00017 26.2 3.5 27 2-28 1-27 (61)
52 PF07172 GRP: Glycine rich pro 69.4 4.6 0.0001 29.9 2.6 19 7-25 4-22 (95)
53 cd01927 cyclophilin_WD40 cyclo 67.7 5 0.00011 32.0 2.7 26 206-231 122-147 (148)
54 KOG0865|consensus 59.0 7.3 0.00016 32.0 2.2 29 206-235 139-167 (167)
55 cd01925 cyclophilin_CeCYP16-li 56.8 9.2 0.0002 31.3 2.4 30 207-236 132-161 (171)
56 PF04126 Cyclophil_like: Cyclo 53.8 15 0.00033 28.2 3.1 47 127-178 60-113 (120)
57 PF07172 GRP: Glycine rich pro 52.9 23 0.0005 26.2 3.8 24 2-25 2-25 (95)
58 PRK14864 putative biofilm stre 51.0 45 0.00098 25.1 5.1 38 48-92 48-85 (104)
59 PRK10791 peptidyl-prolyl cis-t 50.1 14 0.00031 29.9 2.6 29 206-234 130-162 (164)
60 cd01922 cyclophilin_SpCYP2_lik 49.1 13 0.00029 29.5 2.2 24 206-230 122-145 (146)
61 KOG0883|consensus 48.1 15 0.00032 34.2 2.5 48 188-235 377-431 (518)
62 PF06138 Chordopox_E11: Chordo 47.3 1E+02 0.0023 24.0 6.7 48 39-93 5-61 (130)
63 cd00317 cyclophilin cyclophili 44.4 19 0.00041 28.1 2.4 26 206-231 121-146 (146)
64 PHA03001 putative virion core 44.3 1.1E+02 0.0023 24.0 6.3 48 39-93 5-60 (132)
65 PTZ00459 mucin-associated surf 44.0 13 0.00029 33.2 1.6 15 6-20 7-21 (291)
66 COG5429 Uncharacterized secret 41.7 71 0.0015 27.8 5.5 23 55-77 44-70 (261)
67 COG5510 Predicted small secret 40.8 40 0.00087 21.2 2.9 18 5-22 2-19 (44)
68 COG4704 Uncharacterized protei 40.5 1.9E+02 0.004 23.0 9.6 52 43-95 33-89 (151)
69 PRK10081 entericidin B membran 39.2 43 0.00093 21.6 2.9 15 5-19 2-16 (48)
70 KOG4088|consensus 38.2 1.7E+02 0.0037 23.4 6.7 32 168-199 104-136 (167)
71 PF05984 Cytomega_UL20A: Cytom 36.2 36 0.00078 24.6 2.4 18 5-22 1-18 (100)
72 PRK10540 lipoprotein; Provisio 34.3 51 0.0011 23.1 3.0 24 1-24 1-24 (72)
73 cd01920 cyclophilin_EcCYP_like 34.1 36 0.00079 27.2 2.5 26 206-231 125-154 (155)
74 PRK13150 cytochrome c-type bio 33.2 55 0.0012 26.6 3.4 25 1-25 1-25 (159)
75 PRK13165 cytochrome c-type bio 33.1 48 0.001 27.0 3.0 24 1-24 1-24 (160)
76 PRK13159 cytochrome c-type bio 32.4 60 0.0013 26.3 3.5 27 1-27 1-27 (155)
77 PRK13254 cytochrome c-type bio 30.6 52 0.0011 26.4 2.9 24 1-24 1-24 (148)
78 PF10731 Anophelin: Thrombin i 30.4 62 0.0014 21.9 2.7 14 7-20 4-17 (65)
79 TIGR01098 3A0109s03R phosphate 29.1 1.1E+02 0.0024 25.7 4.9 19 51-69 31-49 (254)
80 TIGR03042 PS_II_psbQ_bact phot 29.1 58 0.0013 26.0 2.8 21 7-27 2-22 (142)
81 TIGR03561 organ_hyd_perox pero 27.4 2.3E+02 0.005 21.7 6.0 34 53-93 92-126 (134)
82 PF12071 DUF3551: Protein of u 26.9 72 0.0016 22.9 2.8 18 5-22 1-18 (82)
83 PTZ00116 signal peptidase; Pro 25.9 2.1E+02 0.0045 23.9 5.7 18 48-65 58-75 (185)
84 PRK13415 flagella biosynthesis 24.0 58 0.0013 27.9 2.1 15 61-75 59-73 (219)
85 PF05913 DUF871: Bacterial pro 23.8 48 0.001 30.6 1.7 50 128-178 299-349 (357)
86 PF12396 DUF3659: Protein of u 23.7 84 0.0018 21.5 2.5 29 156-186 16-44 (64)
87 PF08139 LPAM_1: Prokaryotic m 23.1 89 0.0019 17.3 2.0 14 3-16 5-18 (25)
88 PF11306 DUF3108: Protein of u 22.3 1.2E+02 0.0026 24.9 3.8 23 36-58 21-43 (238)
89 COG3017 LolB Outer membrane li 21.0 94 0.002 26.4 2.8 25 2-27 1-25 (206)
90 COG5572 Predicted integral mem 20.8 1.5E+02 0.0032 21.8 3.4 40 3-42 10-50 (104)
91 cd01271 Fe65_C Fe65 C-terminal 20.6 99 0.0021 24.1 2.6 34 168-201 18-54 (124)
92 PF06716 DUF1201: Protein of u 20.6 1.7E+02 0.0037 18.7 3.2 24 2-25 1-24 (54)
93 PTZ00102 disulphide isomerase; 20.2 51 0.0011 30.8 1.2 16 52-68 50-65 (477)
No 1
>KOG0880|consensus
Probab=100.00 E-value=2.3e-61 Score=392.69 Aligned_cols=175 Identities=67% Similarity=1.117 Sum_probs=162.6
Q ss_pred hhcCCCCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhc-CCCCCccCCCEEEEeecCceeeecCCCCCCCC
Q psy10359 29 KVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAK-RPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107 (249)
Q Consensus 29 ~~~~~~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~-~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~ 107 (249)
..++.|++|++|||||.+++...|||+|+||++.+|+||+||.+||+ +..|+||.|++||||+|+|||||||++.+++.
T Consensus 31 ~~~~~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gt 110 (217)
T KOG0880|consen 31 KYEPGPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGT 110 (217)
T ss_pred ccCCCCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCC
Confidence 45788999999999999999999999999999999999999999999 66689999999999999999999999999999
Q ss_pred CCCccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCc
Q psy10359 108 GGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRP 187 (249)
Q Consensus 108 ~~~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P 187 (249)
|+.++||..|+||++.++|+++|+|||||.|||+||||||||+...+||||+|+|||+|++|||+|.+|++++++.+++|
T Consensus 111 Gg~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP 190 (217)
T KOG0880|consen 111 GGKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKP 190 (217)
T ss_pred CCeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877666
Q ss_pred ccceEEeeeeeeccCC
Q psy10359 188 VQGVTIVDCGHTPVEE 203 (249)
Q Consensus 188 ~~~i~I~~cg~l~~~~ 203 (249)
.++++|.+||.+..+.
T Consensus 191 ~e~v~I~~~g~l~~~~ 206 (217)
T KOG0880|consen 191 LEDVVIANCGELPVEY 206 (217)
T ss_pred cccEEEeecCcccccc
Confidence 6666666666554433
No 2
>KOG0546|consensus
Probab=100.00 E-value=2.8e-57 Score=399.19 Aligned_cols=167 Identities=54% Similarity=0.931 Sum_probs=162.2
Q ss_pred cccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCC--------ccCCCEEEEeecCceeeecCCCCCCCC
Q psy10359 36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQ--------GYKGSKFHRVIKDFMIQGGDYTKGDGT 107 (249)
Q Consensus 36 ~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~--------~Y~g~~f~ri~~~~~iq~Gd~~~~~~~ 107 (249)
..++|||||+|++.+.|||+||||.|.||+||+||+.||+|..|. +|+|+.||||+++|||||||++.++|+
T Consensus 7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGt 86 (372)
T KOG0546|consen 7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGT 86 (372)
T ss_pred CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCC
Confidence 468999999999999999999999999999999999999998863 499999999999999999999999999
Q ss_pred CCCccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCc
Q psy10359 108 GGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRP 187 (249)
Q Consensus 108 ~~~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P 187 (249)
||.|+||..|+||++.++|+++++|||||.|||+||||||||+.++|||||+|+|||+||+|++||+.|+++.++..++|
T Consensus 87 GGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP 166 (372)
T KOG0546|consen 87 GGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKP 166 (372)
T ss_pred CcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEeeeeeeccC
Q psy10359 188 VQGVTIVDCGHTPVE 202 (249)
Q Consensus 188 ~~~i~I~~cg~l~~~ 202 (249)
..+|+|.+||+|+..
T Consensus 167 ~~dV~I~dCGel~~~ 181 (372)
T KOG0546|consen 167 LADVVISDCGELVKK 181 (372)
T ss_pred ccceEeccccccccc
Confidence 999999999999764
No 3
>KOG0879|consensus
Probab=100.00 E-value=1.2e-51 Score=317.11 Aligned_cols=165 Identities=54% Similarity=0.912 Sum_probs=159.3
Q ss_pred CCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCC-----CccCCCEEEEeecCceeeecCCCCCCCCC
Q psy10359 34 PKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEG-----QGYKGSKFHRVIKDFMIQGGDYTKGDGTG 108 (249)
Q Consensus 34 ~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g-----~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~ 108 (249)
++..+.|||||++++.++|||.||||.|.+|+|++||++.|+|.+. .||+++.|||++++|||||||...++|+|
T Consensus 7 ~~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG 86 (177)
T KOG0879|consen 7 SPNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTG 86 (177)
T ss_pred CCCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCce
Confidence 4457899999999999999999999999999999999999999752 37999999999999999999999999999
Q ss_pred CCccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcc
Q psy10359 109 GASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPV 188 (249)
Q Consensus 109 ~~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~ 188 (249)
..++|+.+|+||++.++|+.+|+|||||+|+++||+|||||..++.|||++|+|||||++|+.++++|+++++.++++|+
T Consensus 87 ~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPK 166 (177)
T KOG0879|consen 87 VASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPK 166 (177)
T ss_pred EEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeeeee
Q psy10359 189 QGVTIVDCGH 198 (249)
Q Consensus 189 ~~i~I~~cg~ 198 (249)
-+|.|..||.
T Consensus 167 l~v~i~qCGe 176 (177)
T KOG0879|consen 167 LPVVIVQCGE 176 (177)
T ss_pred CcEEEeeccc
Confidence 9999999996
No 4
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=7.3e-48 Score=315.72 Aligned_cols=159 Identities=62% Similarity=1.065 Sum_probs=150.2
Q ss_pred cEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCC-----CccCCCEEEEeecCceeeecCCCCCCCCCCCcc
Q psy10359 38 DIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEG-----QGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASI 112 (249)
Q Consensus 38 ~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g-----~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~ 112 (249)
|+|||||++++++.|+|+||||.+.||++|+||++||++..| ..|+++.|||++|+|++|+||+..+++.++.++
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~ 80 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSI 80 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcc
Confidence 579999999999999999999999999999999999997545 239999999999999999999877777888889
Q ss_pred CCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceE
Q psy10359 113 YGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVT 192 (249)
Q Consensus 113 ~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~ 192 (249)
++..+++|...+.|+++|+|+|++.++++++|||||+++++++||++|+|||||++|||||++|++++++ +++|.++|+
T Consensus 81 ~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~~i~ 159 (164)
T cd01926 81 YGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVV 159 (164)
T ss_pred cCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcCCeE
Confidence 9999999988899999999999999999999999999999999999999999999999999999999998 899999999
Q ss_pred Eeeee
Q psy10359 193 IVDCG 197 (249)
Q Consensus 193 I~~cg 197 (249)
|.+||
T Consensus 160 I~~cG 164 (164)
T cd01926 160 IADCG 164 (164)
T ss_pred EEECC
Confidence 99997
No 5
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=1.9e-47 Score=328.98 Aligned_cols=169 Identities=33% Similarity=0.469 Sum_probs=153.8
Q ss_pred CCCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCC--------ccCCCEEEEeecC-ceeeecCCCC
Q psy10359 33 GPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQ--------GYKGSKFHRVIKD-FMIQGGDYTK 103 (249)
Q Consensus 33 ~~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~--------~Y~g~~f~ri~~~-~~iq~Gd~~~ 103 (249)
.+..+++||||+++++++.|+|+||||.+.||+||+||++||++..|. +|+|+.||||+++ +++|+||+..
T Consensus 48 ~~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~ 127 (249)
T PTZ00221 48 EEQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS 127 (249)
T ss_pred cCCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC
Confidence 446689999999999999999999999999999999999999875432 3999999999986 8999999763
Q ss_pred CCCCCCCccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCC
Q psy10359 104 GDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDG 183 (249)
Q Consensus 104 ~~~~~~~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~ 183 (249)
.+.+.+|.+|++|++.++|+++|+|+|++.++++||||||||+.++|+||++|+|||||++||+||++|++++++.
T Consensus 128 ----~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~ 203 (249)
T PTZ00221 128 ----FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDD 203 (249)
T ss_pred ----CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCC
Confidence 2346678899999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCcccceEEeeeeeeccCCCc
Q psy10359 184 RDRPVQGVTIVDCGHTPVEEPF 205 (249)
Q Consensus 184 ~~~P~~~i~I~~cg~l~~~~p~ 205 (249)
+++|.++|+|.+||++....|-
T Consensus 204 ~grP~~~V~I~~Cgvl~~~~p~ 225 (249)
T PTZ00221 204 VGRPLLPVTVSFCGALTGEKPP 225 (249)
T ss_pred CCCCCCCeEEEECeEecCCCCC
Confidence 8999999999999999755543
No 6
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=4.4e-47 Score=316.45 Aligned_cols=163 Identities=53% Similarity=0.952 Sum_probs=153.1
Q ss_pred ccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCC---C--CccCCCEEEEeecCceeeecCCCCCCCCCCCc
Q psy10359 37 TDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPE---G--QGYKGSKFHRVIKDFMIQGGDYTKGDGTGGAS 111 (249)
Q Consensus 37 t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~---g--~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~ 111 (249)
.++|||||++++++.|+|+||||.+.+|+||+||++||++++ | .+|+++.||||+|++++||||+..+++.++.+
T Consensus 18 ~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~ 97 (186)
T PLN03149 18 NPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVS 97 (186)
T ss_pred CCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCccc
Confidence 568999999999999999999999999999999999998743 2 24999999999999999999987788888888
Q ss_pred cCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEE-ccHHHHHHHHhCCCCCCCCcccc
Q psy10359 112 IYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVI-TGGDIVKKIESSETDGRDRPVQG 190 (249)
Q Consensus 112 ~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi-~G~~vl~~I~~~~~~~~~~P~~~ 190 (249)
+|+..|++|...+.|+++|+|+|++.++++++|||||+++++|+||++|+|||||+ +||+||++|++++++++++|.++
T Consensus 98 ~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~ 177 (186)
T PLN03149 98 IYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLA 177 (186)
T ss_pred ccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCC
Confidence 99999999988899999999999999999999999999999999999999999999 79999999999999989999999
Q ss_pred eEEeeeeee
Q psy10359 191 VTIVDCGHT 199 (249)
Q Consensus 191 i~I~~cg~l 199 (249)
|+|.+||++
T Consensus 178 i~I~~cG~~ 186 (186)
T PLN03149 178 CVISECGEM 186 (186)
T ss_pred eEEEeCEeC
Confidence 999999974
No 7
>KOG0111|consensus
Probab=100.00 E-value=2.5e-48 Score=321.28 Aligned_cols=166 Identities=52% Similarity=0.885 Sum_probs=160.1
Q ss_pred CCCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCcc
Q psy10359 33 GPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASI 112 (249)
Q Consensus 33 ~~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~ 112 (249)
+..-+++||+++.|++...|||++.|..|..|+|++||..||++..|+||+|++||||+|.||+||||.+.++|+|+.++
T Consensus 132 aa~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksi 211 (298)
T KOG0111|consen 132 AAMENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSI 211 (298)
T ss_pred hhhhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCccc
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceE
Q psy10359 113 YGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVT 192 (249)
Q Consensus 113 ~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~ 192 (249)
||..|.||++.++|..+|+|||+|+|+|+|||||||++....|||++|+|||.|++||+||+++++..+. +++|...|+
T Consensus 212 ygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsk-sgkp~qkv~ 290 (298)
T KOG0111|consen 212 YGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSK-SGKPQQKVK 290 (298)
T ss_pred ccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCC-CCCcceEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999998764 789999999
Q ss_pred Eeeeeee
Q psy10359 193 IVDCGHT 199 (249)
Q Consensus 193 I~~cg~l 199 (249)
|.+||.+
T Consensus 291 i~~cge~ 297 (298)
T KOG0111|consen 291 IVECGEI 297 (298)
T ss_pred EEecccc
Confidence 9999976
No 8
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=1.2e-46 Score=313.37 Aligned_cols=161 Identities=53% Similarity=0.885 Sum_probs=150.9
Q ss_pred ccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCC-------CCCccCCCEEEEeecCceeeecCCCCCCCCCC
Q psy10359 37 TDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRP-------EGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG 109 (249)
Q Consensus 37 t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~-------~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~ 109 (249)
+++||||+++++++.|+|+||||.+.||++|+||++||++. .++ |+++.|||++|++++||||+..+.+.++
T Consensus 15 ~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~-Y~~~~fhRvi~~~~iqgGd~~~~~g~~g 93 (183)
T PTZ00060 15 RPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLH-YKGSIFHRIIPQFMCQGGDITNHNGTGG 93 (183)
T ss_pred CCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccc-cCCeEEEEEcCCCeEEeCCccCCCCCCC
Confidence 67899999999999999999999999999999999999853 245 9999999999999999999887777888
Q ss_pred CccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCccc
Q psy10359 110 ASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQ 189 (249)
Q Consensus 110 ~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~ 189 (249)
.+.++..+++|...+.|..+|+|+|++.++++++|||||+++++++||++|+|||||++|||||++|++.++. +++|.+
T Consensus 94 ~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~-~~~P~~ 172 (183)
T PTZ00060 94 ESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGYPKK 172 (183)
T ss_pred CcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCC-CCCCcC
Confidence 8889999999988899999999999999999999999999999999999999999999999999999998874 689999
Q ss_pred ceEEeeeeee
Q psy10359 190 GVTIVDCGHT 199 (249)
Q Consensus 190 ~i~I~~cg~l 199 (249)
+|+|.+||++
T Consensus 173 ~v~I~~cg~~ 182 (183)
T PTZ00060 173 PVVVTDCGEL 182 (183)
T ss_pred CeEEEEeEEc
Confidence 9999999987
No 9
>KOG0881|consensus
Probab=100.00 E-value=7.6e-48 Score=292.86 Aligned_cols=151 Identities=58% Similarity=0.951 Sum_probs=144.3
Q ss_pred cEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCC
Q psy10359 38 DIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKF 117 (249)
Q Consensus 38 ~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~ 117 (249)
+.|+++ |+.|.|++|||-+.||+||+||.+|++. || |+|..||||+++|+|||||++ +.|.|+.++||..|
T Consensus 10 ~~V~Le-----TsmG~i~~ElY~kHaP~TC~NF~eLarr--gY-Yn~v~FHRii~DFmiQGGDPT-GTGRGGaSIYG~kF 80 (164)
T KOG0881|consen 10 PNVTLE-----TSMGKITLELYWKHAPRTCQNFAELARR--GY-YNGVIFHRIIKDFMIQGGDPT-GTGRGGASIYGDKF 80 (164)
T ss_pred CeEEEe-----ecccceehhhhhhcCcHHHHHHHHHHhc--cc-ccceeeeehhhhheeecCCCC-CCCCCccccccchh
Confidence 457777 9999999999999999999999999999 77 999999999999999999998 88999999999999
Q ss_pred CCCc-ccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEeee
Q psy10359 118 EDEN-FKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDC 196 (249)
Q Consensus 118 ~~e~-~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~c 196 (249)
+||. ..++|..+|.|||||.|||+|||||||||.+.+||||+|++||||..||+|+.++..+.++.+++|..+++|.+.
T Consensus 81 ~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika 160 (164)
T KOG0881|consen 81 EDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKA 160 (164)
T ss_pred hhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEee
Confidence 9996 469999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred e
Q psy10359 197 G 197 (249)
Q Consensus 197 g 197 (249)
-
T Consensus 161 ~ 161 (164)
T KOG0881|consen 161 Y 161 (164)
T ss_pred e
Confidence 3
No 10
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=7.7e-46 Score=302.20 Aligned_cols=152 Identities=47% Similarity=0.829 Sum_probs=143.7
Q ss_pred eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcc-cCCCC
Q psy10359 49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENF-KLSHY 127 (249)
Q Consensus 49 t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~-~~~h~ 127 (249)
|+.|+|+||||.+.||+||+||++||+. |+ |+++.|||++|++++||||+. +++.++.++++..+++|.. .++|+
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~--g~-Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E~~~~~~h~ 81 (159)
T cd01923 6 TNKGDLNLELHCDKAPKACENFIKLCKK--GY-YDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEFKPNLSHD 81 (159)
T ss_pred EccccEEEEEeCCCChHHHHHHHHHHhc--Cc-cCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCcccccCcCcC
Confidence 9999999999999999999999999998 66 999999999999999999987 6678888899999999954 57898
Q ss_pred cceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEeeeeeeccCCCch
Q psy10359 128 GSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFS 206 (249)
Q Consensus 128 ~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~cg~l~~~~p~~ 206 (249)
++|+|+|++.++++++|||||+++++++||++|+|||||++||++|++|++++++++++|.++|+|.+|+++ .|||+
T Consensus 82 ~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~--~dpf~ 158 (159)
T cd01923 82 GRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVF--VDPFE 158 (159)
T ss_pred CCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEE--eCCCC
Confidence 999999999999999999999999999999999999999999999999999999889999999999999999 68886
No 11
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=6.1e-45 Score=298.93 Aligned_cols=154 Identities=42% Similarity=0.686 Sum_probs=139.3
Q ss_pred ceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCC-------CCCCCC
Q psy10359 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYG-------DKFEDE 120 (249)
Q Consensus 48 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~-------~~~~~e 120 (249)
.|+.|+|+||||.+.||+||+||++||++ ++ |+++.|||+++++++||||+. +++.++.++++ ..+++|
T Consensus 3 ~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~--~~-Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~~~~~~e 78 (166)
T cd01921 3 ETTLGDLVIDLFTDECPLACLNFLKLCKL--KY-YNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQARFFEPE 78 (166)
T ss_pred EeccCCEEEEEcCCCCCHHHHHHHHHHhc--CC-cCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccCcccCcc
Confidence 38999999999999999999999999999 66 999999999999999999987 55666666554 346667
Q ss_pred cc-cCCCCcceEEEEecCCCCCCCceEEEEcCC-CCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEeeeee
Q psy10359 121 NF-KLSHYGSGWLSMANAGKDTNGSQFFITTKK-TPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198 (249)
Q Consensus 121 ~~-~~~h~~~G~vsm~~~~~~~~~SqFfItl~~-~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~cg~ 198 (249)
.. .++|+.+|+|+|++.++++++|||||++.+ +++||++|+|||||++|||||++|++++++++++|.++|+|.+|++
T Consensus 79 ~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i 158 (166)
T cd01921 79 ILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHI 158 (166)
T ss_pred cCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEE
Confidence 54 678989999999999999999999999975 8999999999999999999999999999999999999999999999
Q ss_pred eccCCCchh
Q psy10359 199 TPVEEPFSD 207 (249)
Q Consensus 199 l~~~~p~~~ 207 (249)
+ .|||.+
T Consensus 159 ~--~~pf~~ 165 (166)
T cd01921 159 L--DDPFPD 165 (166)
T ss_pred E--CCCCCC
Confidence 9 689864
No 12
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-45 Score=293.14 Aligned_cols=145 Identities=52% Similarity=0.849 Sum_probs=130.7
Q ss_pred ceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcccCCCC
Q psy10359 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHY 127 (249)
Q Consensus 48 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~h~ 127 (249)
.|+.|+|+|+||++.||+||+||++||+. |+ |+|+.||||+|+||+||||+..+.+.++.+ .+|++|.....|.
T Consensus 5 ~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~--g~-Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~---~~f~~E~~~~~~~ 78 (158)
T COG0652 5 ETNKGDITIELYPDKAPKTVANFLQLVKE--GF-YDGTIFHRVIPGFMIQGGDPTGGDGTGGPG---PPFKDENFALNGD 78 (158)
T ss_pred eccCCCEEEEECCCcCcHHHHHHHHHHHc--CC-CCCceEEEeecCceeecCCCCCCCCCCCCC---CCCcccccccccc
Confidence 49999999999999999999999999998 77 999999999999999999999776777774 7899998888777
Q ss_pred c--ceEEEEecCC-CCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCC----CCcccceEEeeeee
Q psy10359 128 G--SGWLSMANAG-KDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGR----DRPVQGVTIVDCGH 198 (249)
Q Consensus 128 ~--~G~vsm~~~~-~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~----~~P~~~i~I~~cg~ 198 (249)
+ +|+|||||++ |++|+|||||++.++||||++|+|||+|++|||+|++|++..+... +.|..+++|....+
T Consensus 79 ~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~ 156 (158)
T COG0652 79 RHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKI 156 (158)
T ss_pred cCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeee
Confidence 7 9999999999 9999999999999999999999999999999999999999877643 45656777776544
No 13
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=2.3e-44 Score=291.70 Aligned_cols=145 Identities=49% Similarity=0.801 Sum_probs=137.0
Q ss_pred eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcc-cCCCC
Q psy10359 49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENF-KLSHY 127 (249)
Q Consensus 49 t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~-~~~h~ 127 (249)
|+.|+|+||||++.||+||+||++||++ |+ |+|+.|||++|+|++||||+. +++.++.++++.++++|.. .++|+
T Consensus 7 T~~G~i~ieL~~~~aP~t~~nF~~L~~~--g~-Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~~~~ 82 (153)
T cd01928 7 TNLGDIKIELFCDDCPKACENFLALCAS--GY-YNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDEFRETLKHD 82 (153)
T ss_pred EccccEEEEEcCCCCcHHHHHHHHHHhc--Cc-cCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCccccccccCCCcC
Confidence 9999999999999999999999999999 66 999999999999999999986 5677788888999999975 57888
Q ss_pred cceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEeeee
Q psy10359 128 GSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197 (249)
Q Consensus 128 ~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~cg 197 (249)
++|+|+|++.++++++|||||+++++++||++|+|||||++|||||++|++++++++++|..+|+|.+|.
T Consensus 83 ~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 152 (153)
T cd01928 83 SRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT 152 (153)
T ss_pred CCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence 9999999999999999999999999999999999999999999999999999999899999999999973
No 14
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=3.9e-44 Score=295.35 Aligned_cols=168 Identities=44% Similarity=0.727 Sum_probs=153.8
Q ss_pred CCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccC
Q psy10359 34 PKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIY 113 (249)
Q Consensus 34 ~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~ 113 (249)
|+.+.+|.++ |+.|+|+||||.+.+|+||+||++||+. |+ |+++.|||++|+|++|||++. +++.++.++|
T Consensus 2 ~~~~~~v~i~-----Ts~G~i~ieL~~~~~P~t~~nF~~L~~~--~~-Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~s~~ 72 (171)
T cd01925 2 PPTTGKVILK-----TTAGDIDIELWSKEAPKACRNFIQLCLE--GY-YDNTIFHRVVPGFIIQGGDPT-GTGTGGESIY 72 (171)
T ss_pred CCcccEEEEE-----EccccEEEEEeCCCChHHHHHHHHHHhc--CC-CCCCEEEEEcCCcEEEccccC-CCCccCcccC
Confidence 5667778777 9999999999999999999999999999 66 999999999999999999987 6678888899
Q ss_pred CCCCCCCcc-cCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEc-cHHHHHHHHhCCCCCCCCcccce
Q psy10359 114 GDKFEDENF-KLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVIT-GGDIVKKIESSETDGRDRPVQGV 191 (249)
Q Consensus 114 ~~~~~~e~~-~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~-G~~vl~~I~~~~~~~~~~P~~~i 191 (249)
+..+++|.. .+.|+++|+|+|++.++++++|||||+++++++||++|+|||||++ +++++++|++++++++++|.++|
T Consensus 73 g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i 152 (171)
T cd01925 73 GEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPP 152 (171)
T ss_pred CCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCe
Confidence 999999965 5778889999999999999999999999999999999999999993 57889999999999999999999
Q ss_pred EEeeeeeeccCCCchhhhhhh
Q psy10359 192 TIVDCGHTPVEEPFSDVVKKI 212 (249)
Q Consensus 192 ~I~~cg~l~~~~p~~~vv~~i 212 (249)
+|.+|+++ .+||.+.+.+|
T Consensus 153 ~I~~~~i~--~~pf~~~~~~~ 171 (171)
T cd01925 153 KITSVEVL--ENPFDDIVPRI 171 (171)
T ss_pred EEEEEEEE--cCCchhhcccC
Confidence 99999998 78999887654
No 15
>KOG0883|consensus
Probab=100.00 E-value=1.8e-45 Score=325.13 Aligned_cols=173 Identities=44% Similarity=0.737 Sum_probs=161.8
Q ss_pred CcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCC
Q psy10359 35 KVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYG 114 (249)
Q Consensus 35 ~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~ 114 (249)
.+..+-|+.+. |+.|.|.|||+.|.+|++|+||+.||+. || |+|+.|||.+.+||||||||+ |.|.||.|+||
T Consensus 273 rvKkkgyvrl~---Tn~G~lNlELhcd~~P~aceNFI~lc~~--gY-Ynnt~FHRsIrnFmiQGGDPT-GTG~GGeSiWg 345 (518)
T KOG0883|consen 273 RVKKKGYVRLV---TNHGPLNLELHCDYAPRACENFITLCKN--GY-YNNTIFHRSIRNFMIQGGDPT-GTGRGGESIWG 345 (518)
T ss_pred cccccceEEEe---ccCCceeeEeecCcchHHHHHHHHHHhc--cc-ccchHHHHHHHHHeeeCCCCC-CCCCCCccccC
Confidence 45667788887 9999999999999999999999999999 77 999999999999999999999 88999999999
Q ss_pred CCCCCCcc-cCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEE
Q psy10359 115 DKFEDENF-KLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTI 193 (249)
Q Consensus 115 ~~~~~e~~-~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I 193 (249)
.+|.||.. .+.|+.||+|||||+||++|||||||+..++.+||++||+||||+.|+++|.+|+++++++.++|..+|+|
T Consensus 346 KpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i 425 (518)
T KOG0883|consen 346 KPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKI 425 (518)
T ss_pred CccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEE
Confidence 99999975 59999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeccCCCchhhhhhhcccc
Q psy10359 194 VDCGHTPVEEPFSDVVKKIESSE 216 (249)
Q Consensus 194 ~~cg~l~~~~p~~~vv~~iE~~~ 216 (249)
.+.-|+ -|||+..-+.+|+.+
T Consensus 426 ~~~~VF--VdPfeEa~~e~~kEr 446 (518)
T KOG0883|consen 426 EDAIVF--VDPFEEADKEREKER 446 (518)
T ss_pred eeeEEe--eCcHHHHHHHHHHHH
Confidence 999888 479988876665443
No 16
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=2.3e-44 Score=290.19 Aligned_cols=144 Identities=55% Similarity=0.897 Sum_probs=136.0
Q ss_pred ceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcc-cCCC
Q psy10359 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENF-KLSH 126 (249)
Q Consensus 48 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~-~~~h 126 (249)
.|+.|+|+||||.+.||++|+||++||++ |+ |+++.|||++|+|++||||+. +++.++.++|+..+++|.. .++|
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~--g~-Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~~h 78 (148)
T cd01927 3 HTTKGDIHIRLFPEEAPKTVENFTTHARN--GY-YNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDEFSPSLKH 78 (148)
T ss_pred EeccccEEEEEeCCCCcHHHHHHHHHhhc--CC-cCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCccccccccccCc
Confidence 38999999999999999999999999999 66 999999999999999999986 6678888888999999976 6889
Q ss_pred CcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEee
Q psy10359 127 YGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVD 195 (249)
Q Consensus 127 ~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 195 (249)
.++|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|++++++++++|.++|+|.+
T Consensus 79 ~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 79 DRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred CCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 989999999999999999999999999999999999999999999999999999998999999999985
No 17
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=2.4e-43 Score=294.79 Aligned_cols=152 Identities=32% Similarity=0.510 Sum_probs=131.8
Q ss_pred ccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCC
Q psy10359 37 TDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDK 116 (249)
Q Consensus 37 t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~ 116 (249)
..+|.++ |+.|+|+||||.+.||+||+||++||+. |+ |+|+.|||++|+|++|||++....+ ...++.+
T Consensus 28 ~~~v~l~-----T~~G~i~ieL~~~~aP~t~~NF~~L~~~--g~-Ydg~~FhRvi~~f~iQgG~~~~~~~---~~~~~~~ 96 (190)
T PRK10903 28 DPHVLLT-----TSAGNIELELNSQKAPVSVKNFVDYVNS--GF-YNNTTFHRVIPGFMIQGGGFTEQMQ---QKKPNPP 96 (190)
T ss_pred CcEEEEE-----eccccEEEEEeCCCCcHHHHHHHHHHhc--CC-cCCcEEEEEeCCceEEeCCcCCCCC---CCCCCCc
Confidence 4456665 9999999999999999999999999999 66 9999999999999999999764322 1223567
Q ss_pred CCCCcccCCCCcceEEEEecCC-CCCCCceEEEEcCCCCCCCC-----CceEEEEEEccHHHHHHHHhCCCCC----CCC
Q psy10359 117 FEDENFKLSHYGSGWLSMANAG-KDTNGSQFFITTKKTPWLDG-----RHVVFGKVITGGDIVKKIESSETDG----RDR 186 (249)
Q Consensus 117 ~~~e~~~~~h~~~G~vsm~~~~-~~~~~SqFfItl~~~~~ld~-----~~~vFG~Vi~G~~vl~~I~~~~~~~----~~~ 186 (249)
+++|.....|+.+|+|+|++.+ +++|+|||||+++++++||+ +|+|||+|++|||||++|+++++++ +++
T Consensus 97 ~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~ 176 (190)
T PRK10903 97 IKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNV 176 (190)
T ss_pred ccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCc
Confidence 8888655556679999999865 89999999999999999984 8999999999999999999999976 579
Q ss_pred cccceEEeeeeee
Q psy10359 187 PVQGVTIVDCGHT 199 (249)
Q Consensus 187 P~~~i~I~~cg~l 199 (249)
|..+|+|.+|+++
T Consensus 177 P~~~v~I~~~~v~ 189 (190)
T PRK10903 177 PSKPVVILSAKVL 189 (190)
T ss_pred ccCCeEEEEEEEe
Confidence 9999999999876
No 18
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=1.1e-43 Score=285.61 Aligned_cols=142 Identities=56% Similarity=0.976 Sum_probs=133.4
Q ss_pred eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCc-ccCCCC
Q psy10359 49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDEN-FKLSHY 127 (249)
Q Consensus 49 t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~-~~~~h~ 127 (249)
|+.|+|+||||.+.||++|+||++||+. |+ |+++.|||++|+|++||||+. +.+.++.++++.++++|. ..++|+
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~--g~-Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e~~~~~~h~ 79 (146)
T cd01922 4 TTMGEITLELYWNHAPKTCKNFYELAKR--GY-YNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDEIHPELKHT 79 (146)
T ss_pred eccccEEEEEcCCCCcHHHHHHHHHHhc--CC-cCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCcccccccCcCCC
Confidence 8999999999999999999999999999 66 999999999999999999986 566777888899999985 468899
Q ss_pred cceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEee
Q psy10359 128 GSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVD 195 (249)
Q Consensus 128 ~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 195 (249)
++|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|++++++ +++|..+|+|.+
T Consensus 80 ~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~~ 146 (146)
T cd01922 80 GAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKILK 146 (146)
T ss_pred CCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEeC
Confidence 9999999999999999999999999999999999999999999999999999998 889999999963
No 19
>KOG0882|consensus
Probab=100.00 E-value=1e-42 Score=312.82 Aligned_cols=153 Identities=50% Similarity=0.827 Sum_probs=144.9
Q ss_pred cccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCC
Q psy10359 36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGD 115 (249)
Q Consensus 36 ~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~ 115 (249)
+...+.+. |+.|+|.|.||+++||+||+||...|+. || |+|..||||+++||||+|||. |+|.||.++||+
T Consensus 403 l~~~aiih-----tt~gdi~~kl~p~ecpktvenf~th~rn--gy-y~~~~fhriik~fmiqtgdp~-g~gtggesiwg~ 473 (558)
T KOG0882|consen 403 LGKAAIIH-----TTQGDIHIKLYPEECPKTVENFTTHSRN--GY-YDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGK 473 (558)
T ss_pred cccceEEE-----ecccceEEEecccccchhhhhhhccccC--cc-ccCcchHHhhhhheeecCCCC-CCCCCCcccccc
Confidence 44455665 9999999999999999999999999999 77 999999999999999999999 899999999999
Q ss_pred CCCCCcc-cCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEe
Q psy10359 116 KFEDENF-KLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIV 194 (249)
Q Consensus 116 ~~~~e~~-~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~ 194 (249)
.|+||.. .++|+++-+|||||.|||+||||||||+.+.|||||+|||||||+.||||+++|+++.+++++||.++|.|.
T Consensus 474 dfedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~ii 553 (558)
T KOG0882|consen 474 DFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKII 553 (558)
T ss_pred cchhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEE
Confidence 9999975 599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eee
Q psy10359 195 DCG 197 (249)
Q Consensus 195 ~cg 197 (249)
+..
T Consensus 554 nis 556 (558)
T KOG0882|consen 554 NIS 556 (558)
T ss_pred EEe
Confidence 853
No 20
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=3.5e-40 Score=269.89 Aligned_cols=145 Identities=33% Similarity=0.540 Sum_probs=124.9
Q ss_pred eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcccCCCCc
Q psy10359 49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYG 128 (249)
Q Consensus 49 t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~h~~ 128 (249)
|+.|+|+|+||.+.||+||+||++||+. |+ |+++.|||++|+|++|||++..+.+. ..++.++++|.....|+.
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~--g~-Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e~~~~~~~~ 79 (164)
T PRK10791 6 TNHGDIVIKTFDDKAPETVKNFLDYCRE--GF-YNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNEANNGLKNT 79 (164)
T ss_pred EccccEEEEEeCCCCcHHHHHHHHHHhc--CC-cCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCcccccccCC
Confidence 9999999999999999999999999999 66 99999999999999999997644322 223556777754433447
Q ss_pred ceEEEEecCC-CCCCCceEEEEcCCCCCCC-------C-CceEEEEEEccHHHHHHHHhCCCCC----CCCcccceEEee
Q psy10359 129 SGWLSMANAG-KDTNGSQFFITTKKTPWLD-------G-RHVVFGKVITGGDIVKKIESSETDG----RDRPVQGVTIVD 195 (249)
Q Consensus 129 ~G~vsm~~~~-~~~~~SqFfItl~~~~~ld-------~-~~~vFG~Vi~G~~vl~~I~~~~~~~----~~~P~~~i~I~~ 195 (249)
+|+||||+.+ |++|+|||||++.++++|| + +|+|||||++|||||++|++++++. +++|..+|+|.+
T Consensus 80 ~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~ 159 (164)
T PRK10791 80 RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIES 159 (164)
T ss_pred CcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEEE
Confidence 9999999975 8999999999999988876 3 7999999999999999999999976 379999999999
Q ss_pred eeee
Q psy10359 196 CGHT 199 (249)
Q Consensus 196 cg~l 199 (249)
|.+.
T Consensus 160 ~~i~ 163 (164)
T PRK10791 160 VTVS 163 (164)
T ss_pred EEEe
Confidence 8654
No 21
>KOG0884|consensus
Probab=100.00 E-value=5.8e-41 Score=253.85 Aligned_cols=152 Identities=46% Similarity=0.727 Sum_probs=143.0
Q ss_pred eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcc-cCCCC
Q psy10359 49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENF-KLSHY 127 (249)
Q Consensus 49 t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~-~~~h~ 127 (249)
|..|+|-||||.+.+|++|+||+.||...+ |+++.|||-+++|++|+|+++ ..|.|+.++||.+|+||.. .++|+
T Consensus 7 t~~gdikiev~~e~tpktce~~l~~~~~~~---~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede~~~~lkh~ 82 (161)
T KOG0884|consen 7 TDVGDIKIEVFCERTPKTCENFLALCASDY---YNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDEYSEYLKHN 82 (161)
T ss_pred eccCcEEEEEEecCChhHHHHHHHHhhhhh---ccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHHHHHHHhhc
Confidence 889999999999999999999999999955 999999999999999999998 7789999999999999975 49999
Q ss_pred cceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCC-CCcccceEEeeeeeeccCCCch
Q psy10359 128 GSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGR-DRPVQGVTIVDCGHTPVEEPFS 206 (249)
Q Consensus 128 ~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~-~~P~~~i~I~~cg~l~~~~p~~ 206 (249)
.||.|||||+||++|+||||||.+..|+||-+|++||+||+|+|.|+.|+.+++++. .||..++.|.+..+- .|||.
T Consensus 83 ~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~itih--anp~a 160 (161)
T KOG0884|consen 83 VRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH--ANPFA 160 (161)
T ss_pred cceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEEe--cCcCC
Confidence 999999999999999999999999999999999999999999999999999999875 899999999986655 67874
No 22
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.1e-39 Score=264.87 Aligned_cols=141 Identities=36% Similarity=0.519 Sum_probs=123.6
Q ss_pred eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcccCCCCc
Q psy10359 49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYG 128 (249)
Q Consensus 49 t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~h~~ 128 (249)
|+.|+|+||||.+.||+||+||++||+. |+ |+++.|||++|+|++|||++....+. ..++.++++|.....|+.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~--g~-Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~~~~~~~~ 77 (155)
T cd01920 4 TSLGDIVVELYDDKAPITVENFLAYVRK--GF-YDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEAGNGLSNT 77 (155)
T ss_pred ecceeEEEEEeCCCCcHHHHHHHHHHhc--CC-CCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcccccccCC
Confidence 8999999999999999999999999999 66 99999999999999999998744322 223566777866555678
Q ss_pred ceEEEEecCC-CCCCCceEEEEcCCCCCCCC-----CceEEEEEEccHHHHHHHHhCCCCCC----CCcccceEEee
Q psy10359 129 SGWLSMANAG-KDTNGSQFFITTKKTPWLDG-----RHVVFGKVITGGDIVKKIESSETDGR----DRPVQGVTIVD 195 (249)
Q Consensus 129 ~G~vsm~~~~-~~~~~SqFfItl~~~~~ld~-----~~~vFG~Vi~G~~vl~~I~~~~~~~~----~~P~~~i~I~~ 195 (249)
+|+||||+.+ +++++|||||+++++++||+ +|+|||+|++|||||++|++++++++ ++|..+|+|.+
T Consensus 78 ~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~ 154 (155)
T cd01920 78 RGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIES 154 (155)
T ss_pred ceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEE
Confidence 9999999975 89999999999999999995 79999999999999999999999764 68888888875
No 23
>KOG0865|consensus
Probab=100.00 E-value=1.5e-40 Score=269.82 Aligned_cols=163 Identities=54% Similarity=0.917 Sum_probs=153.5
Q ss_pred cccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEE---eecCceeeecCCCCCCCCCCCcc
Q psy10359 36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHR---VIKDFMIQGGDYTKGDGTGGASI 112 (249)
Q Consensus 36 ~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~r---i~~~~~iq~Gd~~~~~~~~~~~~ 112 (249)
++++||+|++++++++|+++++||.|..|+|++||..||++.+|++|+++.||| .++++|+||||.+.++++++.++
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSi 81 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSI 81 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEe
Confidence 468899999999999999999999999999999999999998899999999999 34579999999999999999999
Q ss_pred CCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceE
Q psy10359 113 YGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVT 192 (249)
Q Consensus 113 ~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~ 192 (249)
|++.|+||++.++|..+|.|+|||.+|++|+|||||++....|||++|+|||+|.+||+++++|+..... ++++.++|.
T Consensus 82 y~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~-~gk~~~~i~ 160 (167)
T KOG0865|consen 82 YGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSR-NGKTSKKIT 160 (167)
T ss_pred cccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCc-CCcccccEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999986543 788888888
Q ss_pred Eeeeeee
Q psy10359 193 IVDCGHT 199 (249)
Q Consensus 193 I~~cg~l 199 (249)
|.+||.+
T Consensus 161 i~dcg~l 167 (167)
T KOG0865|consen 161 IADCGQL 167 (167)
T ss_pred EecCCcC
Confidence 8888864
No 24
>KOG0885|consensus
Probab=100.00 E-value=7.2e-40 Score=288.35 Aligned_cols=196 Identities=37% Similarity=0.610 Sum_probs=171.9
Q ss_pred cCCCCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCC
Q psy10359 31 AKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGA 110 (249)
Q Consensus 31 ~~~~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~ 110 (249)
-..|+.|.+|.+. |+.|+|.||||...||++|.||++||.. || |+|+.|||++|+|++||||++ ++|+||.
T Consensus 6 ~~EP~ttgkvil~-----TT~G~I~iELW~kE~P~acrnFiqKOGe--gy-y~nt~fhrlvp~f~~Qggdp~-~~gtGge 76 (439)
T KOG0885|consen 6 NLEPPTTGKVILK-----TTKGDIDIELWAKECPKACRNFIQLCLE--GY-YDNTEFHRLVPGFLVQGGDPT-GTGTGGE 76 (439)
T ss_pred ccCCCccceEEEE-----eccCceeeeehhhhhhHHHHHHHHHHHh--cc-ccCceeeeeccchhcccCCCC-CCCCCcc
Confidence 3568889999998 9999999999999999999999999999 77 999999999999999999998 8899999
Q ss_pred ccCCCCCCCCcc-cCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEc-cHHHHHHHHhCCCCCCCCcc
Q psy10359 111 SIYGDKFEDENF-KLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVIT-GGDIVKKIESSETDGRDRPV 188 (249)
Q Consensus 111 ~~~~~~~~~e~~-~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~-G~~vl~~I~~~~~~~~~~P~ 188 (249)
++||.+|.+|.. ++++.++|+|+|||.+.+.||||||+||+++|+|+++|++||+|+. -+-.+-+|..+.++.+.||.
T Consensus 77 siyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~ 156 (439)
T KOG0885|consen 77 SIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPV 156 (439)
T ss_pred ccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCC
Confidence 999999999975 6889999999999999999999999999999999999999999994 46677889999999999999
Q ss_pred cceEEeeeeeeccCCCchhhhhhhccccC---C-----CCCCCccceEEeecCccCC
Q psy10359 189 QGVTIVDCGHTPVEEPFSDVVKKIESSET---D-----GRDRPVQGVTIVDCGYTPV 237 (249)
Q Consensus 189 ~~i~I~~cg~l~~~~p~~~vv~~iE~~~~---~-----~~d~P~~~v~i~~~g~l~~ 237 (249)
.+-+|.+|.++ .|||.+++.+..+.+. . ....+.+.-.....|+..+
T Consensus 157 ~p~kI~s~EV~--~npFdDI~pr~~r~~~~e~~ke~k~~k~~~~k~~~lLsfgdE~E 211 (439)
T KOG0885|consen 157 DPPKIKSVEVL--INPFDDIKPRELRKESEEKKKERKELKKKGTKNKNLLSFGDEAE 211 (439)
T ss_pred CccceeeeEee--cCchhhcchhhhhcccchhhhhhcccccccccccceeccccccc
Confidence 99999999888 7999999887644431 1 1123345555666776544
No 25
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=2.6e-38 Score=254.11 Aligned_cols=142 Identities=58% Similarity=0.909 Sum_probs=129.5
Q ss_pred eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcccCC-CC
Q psy10359 49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLS-HY 127 (249)
Q Consensus 49 t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~-h~ 127 (249)
|+.|+|+||||.+.||++|+||++||++ ++ |+++.|||++|++++|+|++......+ +.++..+++|..... |+
T Consensus 4 T~~G~i~IeL~~~~~P~~~~nF~~l~~~--~~-Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~~~~~~~~ 78 (146)
T cd00317 4 TTKGRIVIELYGDEAPKTVENFLSLARG--GF-YDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDENFPLKYHH 78 (146)
T ss_pred eccCcEEEEEcCCCChHHHHHHHHHHhc--CC-cCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCccccCcCcC
Confidence 8889999999999999999999999999 55 999999999999999999987544322 455678899987655 88
Q ss_pred cceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEee
Q psy10359 128 GSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVD 195 (249)
Q Consensus 128 ~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 195 (249)
++|+|+|++.++++++|||||+++++++||++|+|||||++||++|++|++.+++++++|.++|+|.+
T Consensus 79 ~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 79 RRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred CCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 89999999999999999999999999999999999999999999999999999999999999999963
No 26
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=3.2e-38 Score=255.92 Aligned_cols=150 Identities=49% Similarity=0.824 Sum_probs=130.5
Q ss_pred EEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCC-CccCCCCCCC
Q psy10359 41 WFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG-ASIYGDKFED 119 (249)
Q Consensus 41 ~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~-~~~~~~~~~~ 119 (249)
||+|++++ .|+|+||||++.||++|+||++||+. ++ |+++.|||++|++++|+|++......+. ....+.++++
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~--~~-y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~ 75 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTS--GF-YDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPD 75 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHT--TS-STTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSS
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhcc--cc-cCCceeecccccceeeeeeccCCCCcccccccCcccccc
Confidence 68888543 99999999999999999999999998 55 9999999999999999999875433111 1233456888
Q ss_pred Ccc--cCCCCcceEEEEecCC--CCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEee
Q psy10359 120 ENF--KLSHYGSGWLSMANAG--KDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVD 195 (249)
Q Consensus 120 e~~--~~~h~~~G~vsm~~~~--~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 195 (249)
|.. .+.| .+|+|+|++.+ +++++|||||+|++.++||++|+|||+|++||++|++|++.++++ +|.++|+|.+
T Consensus 76 E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~I~~ 152 (155)
T PF00160_consen 76 EFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVTISS 152 (155)
T ss_dssp SGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEEEEE
T ss_pred ccccccccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeEEEE
Confidence 874 4555 79999999976 788999999999999999999999999999999999999998876 9999999999
Q ss_pred eee
Q psy10359 196 CGH 198 (249)
Q Consensus 196 cg~ 198 (249)
|||
T Consensus 153 cgv 155 (155)
T PF00160_consen 153 CGV 155 (155)
T ss_dssp EEE
T ss_pred eEC
Confidence 996
No 27
>KOG0415|consensus
Probab=100.00 E-value=3.5e-36 Score=263.53 Aligned_cols=163 Identities=42% Similarity=0.650 Sum_probs=148.5
Q ss_pred eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCC-------CCCCCc
Q psy10359 49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGD-------KFEDEN 121 (249)
Q Consensus 49 t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~-------~~~~e~ 121 (249)
|++|+|+|.||.+.+|.+|.||++||+-++ |+.+.||.|..+|.+|.|||+ |.|.||.++|+. .|+.|.
T Consensus 7 TtlGDlvIDLf~~erP~~clNFLKLCk~KY---YN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q~rffeaE~ 82 (479)
T KOG0415|consen 7 TTLGDLVIDLFVKERPRTCLNFLKLCKIKY---YNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQARFFEAEF 82 (479)
T ss_pred eecccEEeeeecccCcHHHHHHHHHHhHhh---cccceeeeccccceeecCCCC-CCCCCcceeeeecccccchhhhhhh
Confidence 999999999999999999999999999966 999999999999999999999 789999998874 356665
Q ss_pred c-cCCCCcceEEEEecCCCCCCCceEEEEcCC-CCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEeeeeee
Q psy10359 122 F-KLSHYGSGWLSMANAGKDTNGSQFFITTKK-TPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHT 199 (249)
Q Consensus 122 ~-~~~h~~~G~vsm~~~~~~~~~SqFfItl~~-~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~cg~l 199 (249)
. .++|...|+|||++.|.+.+||||||||++ ...||++|+|||+|++|+|+|.+|+.+-++++++|.++|+|.+.-+|
T Consensus 83 ~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTiiL 162 (479)
T KOG0415|consen 83 LPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTIIL 162 (479)
T ss_pred cccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeEEe
Confidence 4 699999999999999999999999999987 56999999999999999999999999999999999999999997777
Q ss_pred ccCCCchhhhhhhccccC
Q psy10359 200 PVEEPFSDVVKKIESSET 217 (249)
Q Consensus 200 ~~~~p~~~vv~~iE~~~~ 217 (249)
++||.+-....++...
T Consensus 163 --dDPFddpp~l~~p~rs 178 (479)
T KOG0415|consen 163 --DDPFDDPPDLAEPMRS 178 (479)
T ss_pred --cCCCCCchhhccCCCC
Confidence 7899877666655443
No 28
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=6.6e-36 Score=247.18 Aligned_cols=129 Identities=36% Similarity=0.561 Sum_probs=109.4
Q ss_pred ceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCC--------------------C
Q psy10359 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDG--------------------T 107 (249)
Q Consensus 48 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~--------------------~ 107 (249)
.|+.|+|+|+||++.||+||+||++||+. |+ |+++.|||++++||+||||+...+. .
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~--g~-Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~ 79 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVER--GF-YDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEG 79 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHh--CC-cCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccC
Confidence 38899999999999999999999999999 66 9999999999999999999874310 1
Q ss_pred CCCccCCCCC-----CCCcccCCCCcceEEEEecCC--CCCCCceEEEEcC-------CCCCCCCCceEEEEEEccHHHH
Q psy10359 108 GGASIYGDKF-----EDENFKLSHYGSGWLSMANAG--KDTNGSQFFITTK-------KTPWLDGRHVVFGKVITGGDIV 173 (249)
Q Consensus 108 ~~~~~~~~~~-----~~e~~~~~h~~~G~vsm~~~~--~~~~~SqFfItl~-------~~~~ld~~~~vFG~Vi~G~~vl 173 (249)
.+.+.++..+ .++...+.|+.+|+|+|++.+ +++++|||||++. ++++||++|+|||||++|||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl 159 (176)
T cd01924 80 QKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDIL 159 (176)
T ss_pred CCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHH
Confidence 1223444433 245566778889999999987 6999999999998 7899999999999999999999
Q ss_pred HHHHhC
Q psy10359 174 KKIESS 179 (249)
Q Consensus 174 ~~I~~~ 179 (249)
++|+..
T Consensus 160 ~~I~~g 165 (176)
T cd01924 160 RELKVG 165 (176)
T ss_pred HhhcCC
Confidence 999753
No 29
>KOG0880|consensus
Probab=98.17 E-value=8.5e-07 Score=73.42 Aligned_cols=43 Identities=49% Similarity=0.728 Sum_probs=39.5
Q ss_pred hhhhhhhccccCCCCCCCccceEEeecCccCCcCceeeecCCC
Q psy10359 206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTPVEEPFSVEKDDA 248 (249)
Q Consensus 206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~~~~~~~v~~~~~ 248 (249)
-++|++||+++|+.+|+|+++|+|++||+||++.++.++++.+
T Consensus 173 mdvv~~Ie~~~TD~~dkP~e~v~I~~~g~l~~~~~~~~~~~~~ 215 (217)
T KOG0880|consen 173 MDVVRKIENVKTDERDKPLEDVVIANCGELPVEYLESVEDAQN 215 (217)
T ss_pred HHHHHHHHhcccCCCCCccccEEEeecCcccccchhhhhhhhc
Confidence 4678999999999999999999999999999999999987653
No 30
>KOG0882|consensus
Probab=97.61 E-value=6.4e-05 Score=69.44 Aligned_cols=145 Identities=22% Similarity=0.294 Sum_probs=115.6
Q ss_pred eeee----eEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCc-cCCC----CCCC
Q psy10359 49 VNVG----KIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGAS-IYGD----KFED 119 (249)
Q Consensus 49 t~~G----~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~-~~~~----~~~~ 119 (249)
+..| -|.|+++.+-.|.-++-|...|.- ++ +++..|.|+...+++|.||..-....+|.. .|.. .+++
T Consensus 105 ~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~--~~-fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr 181 (558)
T KOG0882|consen 105 TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD--GY-FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPR 181 (558)
T ss_pred cCCCCeeeeEEeecccCCCcEEECCcCCcCcc--ce-ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcc
Confidence 4566 999999999999999999999999 55 999999999999999999865433323321 1111 1222
Q ss_pred --CcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEeeee
Q psy10359 120 --ENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197 (249)
Q Consensus 120 --e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~cg 197 (249)
.+..++|. .-++..........+-+|.+.-...+.+..+..|||++.+|.++++.|....++....|..++.|.+..
T Consensus 182 ~~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Ve 260 (558)
T KOG0882|consen 182 TNLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVE 260 (558)
T ss_pred cccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceee
Confidence 34556665 666777666666677889999988888999999999999999999999999999999999999998853
No 31
>KOG0546|consensus
Probab=97.07 E-value=0.00037 Score=62.91 Aligned_cols=35 Identities=37% Similarity=0.622 Sum_probs=31.8
Q ss_pred hhhhhhhccccCCCCCCCccceEEeecCccCCcCc
Q psy10359 206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTPVEEP 240 (249)
Q Consensus 206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~~~~~ 240 (249)
..|||.||+.+++..++|+.+|+|.|||+|+.+..
T Consensus 149 ~~VVr~IEn~~~d~~skP~~dV~I~dCGel~~~~~ 183 (372)
T KOG0546|consen 149 KEVVREIENLETDEESKPLADVVISDCGELVKKSK 183 (372)
T ss_pred hhHHHHHhccccccCCCCccceEeccccccccccc
Confidence 46899999999999999999999999999988733
No 32
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.63 E-value=0.0085 Score=56.42 Aligned_cols=102 Identities=22% Similarity=0.388 Sum_probs=65.9
Q ss_pred eEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcccCCCCcceEE
Q psy10359 53 KIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWL 132 (249)
Q Consensus 53 ~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~h~~~G~v 132 (249)
.+.+||.. .+|.++++|+.+.+. |. + .+.+....|+. .....+...+.|+...+ .+|+|
T Consensus 202 y~evE~~~-~~p~s~EH~la~~~~--G~-~---~Vd~~tsTfi~------------d~~L~g~~~p~En~~~R--~rGtV 260 (503)
T TIGR03268 202 YVEVELDP-NAPVSVEHFLALMED--GT-F---RVDYRTSTFIS------------DDSLRGLDKPEENIEKR--RRGAV 260 (503)
T ss_pred EEEEEEcC-CCChhHHHHHHHHhC--Ce-E---EEeeeecceEe------------cccccCccCCccccCcc--cceeE
Confidence 56677644 569999999999888 43 1 11111111111 11222445566654433 48999
Q ss_pred EEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHh
Q psy10359 133 SMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIES 178 (249)
Q Consensus 133 sm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~ 178 (249)
.+.+.|... -.-||-..+.+ ..-.|+|+|+|+.|||+++--+.
T Consensus 261 TVRn~G~G~--G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~~ 303 (503)
T TIGR03268 261 TVRNSGVGE--GRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQE 303 (503)
T ss_pred EEEeeccCc--eeEEEEcCCCC-CCcccceeEEEecceeeeecccC
Confidence 999987653 35888887765 33469999999999999875543
No 33
>PRK00969 hypothetical protein; Provisional
Probab=96.60 E-value=0.0079 Score=56.77 Aligned_cols=102 Identities=23% Similarity=0.428 Sum_probs=66.2
Q ss_pred eEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcccCCCCcceEE
Q psy10359 53 KIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWL 132 (249)
Q Consensus 53 ~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~h~~~G~v 132 (249)
.+.+||.. .+|.++++|+.+.+. |. + .+.+....|+. ..+..|...+.|+...+ .+|+|
T Consensus 205 y~eve~~~-~~p~s~EH~la~~~~--G~-f---~Vd~~tstfI~------------d~~L~g~~~p~En~~~R--~~GtV 263 (508)
T PRK00969 205 YVEVELDP-GAPKSVEHFLALLED--GT-F---EVDFETSTFIA------------DDRLQGLKIPEENFEPR--RRGTV 263 (508)
T ss_pred EEEEEEcC-CCCchHHHHHHHHhC--Ce-E---EEeeeecceEe------------eccccCccCCccccCcc--ccceE
Confidence 56678754 469999999999988 43 1 11111111111 11222445566665433 48999
Q ss_pred EEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHh
Q psy10359 133 SMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIES 178 (249)
Q Consensus 133 sm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~ 178 (249)
.+.+.|.+. -.-||-..+-+ ..-.|+|+|+|+.|||+++--+.
T Consensus 264 TVRt~G~g~--G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~~ 306 (508)
T PRK00969 264 TVRTAGVGV--GKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAKE 306 (508)
T ss_pred EEEeeccCc--eeEEEECCCCC-CCccceeEEEEecceeeeecccC
Confidence 999987653 35888888765 33469999999999999875443
No 34
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=95.81 E-value=0.092 Score=49.66 Aligned_cols=115 Identities=19% Similarity=0.280 Sum_probs=63.0
Q ss_pred eeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcccCCCCcceE
Q psy10359 52 GKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGW 131 (249)
Q Consensus 52 G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~h~~~G~ 131 (249)
-=|.|+||.+.||+|+.-|+++.--...- ---..+|=..++..+-=|+.. +...+-+||..-....+|.
T Consensus 375 ~vi~IeLydd~AP~s~~yFRk~tGL~~~~-VG~L~v~F~~~d~~mFk~~~~----------~~k~LiPEN~P~~~V~ag~ 443 (503)
T TIGR03268 375 KVIEIELYDDNAPRSVWYFRKFTGLKTKP-VGRLPVHFAFKEMIMFKGNKE----------LAKGLIPENTPEDKVEAGV 443 (503)
T ss_pred hEEEEEEcccCCchHHHHHHHhcCCcccc-cceeEEEEEeCCeeEeccCch----------hccccCCCCCCCCccccce
Confidence 35889999999999999999986332210 112344444555333322221 1223444544444445677
Q ss_pred EEEecCCCCCCCceEEEEc------CCCC-CCCCCceEEEEEEccHHHHHHHHhC
Q psy10359 132 LSMANAGKDTNGSQFFITT------KKTP-WLDGRHVVFGKVITGGDIVKKIESS 179 (249)
Q Consensus 132 vsm~~~~~~~~~SqFfItl------~~~~-~ld~~~~vFG~Vi~G~~vl~~I~~~ 179 (249)
+++-|......|- --|-+ ++.. .+++.+ ++|||+++++.|+++...
T Consensus 444 IgvTN~a~k~~G~-IGVRl~d~defGPTGE~F~gTN-IiG~Vv~~~e~Lk~~KeG 496 (503)
T TIGR03268 444 IGVTNQACKHVGM-IGVRLEDSDEFGPTGEPFSGTN-IIGRVVEGMERLKGLKEG 496 (503)
T ss_pred EeeechhhhcCce-EEEEccCCcccCCCCCCccCcc-eEEEecCChhHhcccccC
Confidence 7776543211110 11112 2222 344544 569999999999888653
No 35
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.02 Score=52.40 Aligned_cols=99 Identities=24% Similarity=0.460 Sum_probs=65.5
Q ss_pred eEEEEEeCCCCcchHHHHHHhhcCCCCC---ccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcccCCCCcc
Q psy10359 53 KIEIGLFGKTVPRTVQNFIELAKRPEGQ---GYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGS 129 (249)
Q Consensus 53 ~i~ieL~~~~aP~t~~nF~~l~~~~~g~---~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~h~~~ 129 (249)
.+.++|.++ +|+++++|++|... |. .|.-..|.- ..+......+.|++.+.. +
T Consensus 204 y~eve~s~n-sP~saEH~lalmed--G~lri~~~tntfis-------------------~~~lq~~~~~~en~d~Re--r 259 (512)
T COG4070 204 YFEVELSRN-SPKSAEHFLALMED--GTLRIDVTTNTFIS-------------------DDTLQEEKVPEENFDLRE--R 259 (512)
T ss_pred EEEEEeCCC-CchhHHHHHHHhhc--ceEEEEEeccceee-------------------ccccccccCChhhhhhhh--c
Confidence 567787554 69999999999877 43 122222211 122234556777766654 8
Q ss_pred eEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHh
Q psy10359 130 GWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIES 178 (249)
Q Consensus 130 G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~ 178 (249)
|.++..|.|-++ -.-||--.+-+. --.|.|.|||++||++++--..
T Consensus 260 G~iTvRn~Gvge--GrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 260 GAITVRNVGVGE--GRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred ceEEEEeeeccc--ceEEEEecCCCC-ccccceeeeeecceEEEEeccc
Confidence 999999976543 357777766542 2368999999999998875543
No 36
>PRK00969 hypothetical protein; Provisional
Probab=95.02 E-value=0.23 Score=47.12 Aligned_cols=114 Identities=20% Similarity=0.249 Sum_probs=62.9
Q ss_pred eeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcccCCCCcceE
Q psy10359 52 GKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGW 131 (249)
Q Consensus 52 G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~h~~~G~ 131 (249)
-=|.|+||.+.||+|+.-|+++.--...- ---..+|=..++.++-=|+.. +...+-+||..-....+|.
T Consensus 378 ~vi~IeLydd~AP~s~~yFR~~tGL~~~~-VG~L~v~F~~~d~~lFk~~~~----------~~k~liPEN~P~~~V~ag~ 446 (508)
T PRK00969 378 KLIEIELYDDKAPRTVWYFRKVTGLKTKP-VGKLPVYFKYEDTYLFKGNIE----------YAKGLLPENTPEDKVKAGE 446 (508)
T ss_pred HEEEEEEcCcCCchHHHHHHHhcCCcccc-cceeEEEEEeCCeEEEccChh----------hccccCCCCCCCCccccce
Confidence 35889999999999999999987332200 112344445555444323222 1223444555444555677
Q ss_pred EEEecCCCCCCCceEEEEc------CCCC-CCCCCceEEEEEEccHHHHHHHHhC
Q psy10359 132 LSMANAGKDTNGSQFFITT------KKTP-WLDGRHVVFGKVITGGDIVKKIESS 179 (249)
Q Consensus 132 vsm~~~~~~~~~SqFfItl------~~~~-~ld~~~~vFG~Vi~G~~vl~~I~~~ 179 (249)
+++-|......|- --|-+ ++.. .+++. -++|||+ +++-|+++...
T Consensus 447 IgvTN~a~k~~G~-iGVR~~d~d~fGPTGE~F~gT-NIIGrVv-~~e~Lk~lKeG 498 (508)
T PRK00969 447 IGVTNMAAKYKGM-IGVRLSDNDEFGPTGEPFEGT-NIIGRVV-NLEKLKKLKEG 498 (508)
T ss_pred EeeechhhhcCce-EEEEccCCcccCCCCCCccCc-eeEEEec-ChHHhcccccC
Confidence 7776543211110 11112 2222 24444 4679999 99998888653
No 37
>KOG0879|consensus
Probab=94.69 E-value=0.026 Score=44.39 Aligned_cols=30 Identities=33% Similarity=0.522 Sum_probs=27.7
Q ss_pred hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359 206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT 235 (249)
Q Consensus 206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l 235 (249)
..++|+||+.++..++||.-+|+|+.||++
T Consensus 148 lli~rkIEnvp~G~NnkPKl~v~i~qCGem 177 (177)
T KOG0879|consen 148 LLIMRKIENVPTGPNNKPKLPVVIVQCGEM 177 (177)
T ss_pred hhhhhhhhcCCCCCCCCCCCcEEEeecccC
Confidence 357999999999999999999999999984
No 38
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=94.34 E-value=0.033 Score=46.51 Aligned_cols=30 Identities=37% Similarity=0.530 Sum_probs=27.3
Q ss_pred hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359 206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT 235 (249)
Q Consensus 206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l 235 (249)
.+++++|++.+++.+++|.++|+|.+||++
T Consensus 157 ~dvl~~I~~~~~~~~~~P~~~i~I~~cG~~ 186 (186)
T PLN03149 157 LLVVRKIENVATGPNNRPKLACVISECGEM 186 (186)
T ss_pred HHHHHHHHcCCCCCCCCCcCCeEEEeCEeC
Confidence 468899999999888999999999999985
No 39
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.22 Score=45.87 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcchHHHHHHhhcC
Q psy10359 53 KIEIGLFGKTVPRTVQNFIELAKR 76 (249)
Q Consensus 53 ~i~ieL~~~~aP~t~~nF~~l~~~ 76 (249)
-|.||||.+.||.++..|+++..-
T Consensus 377 iieIELyed~APrSv~yFRr~t~l 400 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTGL 400 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhccc
Confidence 589999999999999999988643
No 40
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=93.21 E-value=0.29 Score=39.22 Aligned_cols=106 Identities=18% Similarity=0.145 Sum_probs=49.4
Q ss_pred eEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecC--ceeeecCCCCCCCCCCCccCCCCCCCCcccCCCCcce
Q psy10359 53 KIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKD--FMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSG 130 (249)
Q Consensus 53 ~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~--~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~h~~~G 130 (249)
.++.+|..|.||+||+.|.+.- . |.+..+|-...+ .++.-++.. ....+.||... +..+|
T Consensus 9 ~~~A~l~~d~AP~Tcaa~~~~L---P---~~~~~~HarwSG~ei~~~l~~~~-----------~~~~~~EN~T~-~P~pG 70 (147)
T PF12903_consen 9 SFTARLLDDKAPKTCAAFWEAL---P---LKGKVIHARWSGEEIWIPLPDFD-----------PFEPGRENHTV-TPIPG 70 (147)
T ss_dssp EEEEEE-TTTSHHHHHHHHHH--------EEEE-EE-SSSSSEEEEEEE--S-----------SS---S-SEES-S--TT
T ss_pred EEEEEEcccCChHHHHHHHHhC---C---CCCcEEEEEEECcEEEEECCCcC-----------cCCCCCCcCcc-cCCCC
Confidence 5788999999999999999986 1 333434333322 122223221 01123344333 22367
Q ss_pred EEEEe--cC-CCC--CC-CceEEEEcCCCC--------CCCCCceEEEEEEccHHHHHHHHh
Q psy10359 131 WLSMA--NA-GKD--TN-GSQFFITTKKTP--------WLDGRHVVFGKVITGGDIVKKIES 178 (249)
Q Consensus 131 ~vsm~--~~-~~~--~~-~SqFfItl~~~~--------~ld~~~~vFG~Vi~G~~vl~~I~~ 178 (249)
-|.+. .. ... .. =++.-|.+.... ++- -.+|++|++|++-+.++-+
T Consensus 71 di~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~--GN~FatI~egle~la~~~~ 130 (147)
T PF12903_consen 71 DILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLP--GNHFATITEGLEELAEACR 130 (147)
T ss_dssp EEEEE-----------E-EEEEEEE-SSS---EETTTEE----EEEEEEEEESHHHHHHHHH
T ss_pred cEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccc--eeEEEEEcCCHHHHHHHHH
Confidence 77665 11 111 11 133333333322 233 3789999999997766543
No 41
>PTZ00221 cyclophilin; Provisional
Probab=92.56 E-value=0.1 Score=45.52 Aligned_cols=31 Identities=32% Similarity=0.464 Sum_probs=28.4
Q ss_pred hhhhhhhccccCCCCCCCccceEEeecCccC
Q psy10359 206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTP 236 (249)
Q Consensus 206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~ 236 (249)
.+++++|++.+++..++|.++|+|.+||++.
T Consensus 190 mdVv~kIe~v~~d~~grP~~~V~I~~Cgvl~ 220 (249)
T PTZ00221 190 LSLLEKLESLPLDDVGRPLLPVTVSFCGALT 220 (249)
T ss_pred HHHHHHHHcCCcCCCCCCCCCeEEEECeEec
Confidence 4699999999998889999999999999994
No 42
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=90.81 E-value=0.2 Score=40.76 Aligned_cols=27 Identities=48% Similarity=0.796 Sum_probs=24.9
Q ss_pred hhhhhhhccccCCCCCCCccceEEeecC
Q psy10359 206 SDVVKKIESSETDGRDRPVQGVTIVDCG 233 (249)
Q Consensus 206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g 233 (249)
.+++++|++.+++ +++|.++|+|.+||
T Consensus 138 ~dvl~~i~~~~~~-~~~P~~~i~I~~cG 164 (164)
T cd01926 138 MDVVKKIENVGSG-NGKPKKKVVIADCG 164 (164)
T ss_pred HHHHHHHHcCCCC-CCCCcCCeEEEECC
Confidence 4689999999998 88999999999998
No 43
>PTZ00060 cyclophilin; Provisional
Probab=89.62 E-value=0.24 Score=41.16 Aligned_cols=29 Identities=31% Similarity=0.559 Sum_probs=25.2
Q ss_pred hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359 206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT 235 (249)
Q Consensus 206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l 235 (249)
.+++++|++..+. +++|.++|+|.+||+|
T Consensus 154 ~dvl~~I~~~~~~-~~~P~~~v~I~~cg~~ 182 (183)
T PTZ00060 154 MEVVRAMEKEGTQ-SGYPKKPVVVTDCGEL 182 (183)
T ss_pred HHHHHHHHccCCC-CCCCcCCeEEEEeEEc
Confidence 5789999987774 5799999999999987
No 44
>KOG0111|consensus
Probab=88.97 E-value=0.29 Score=41.73 Aligned_cols=29 Identities=34% Similarity=0.683 Sum_probs=25.6
Q ss_pred hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359 206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT 235 (249)
Q Consensus 206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l 235 (249)
-+|||++|.+-+.+ .+|.++|+|.+||+|
T Consensus 269 ~~vvrq~e~qgsks-gkp~qkv~i~~cge~ 297 (298)
T KOG0111|consen 269 MNVVRQVEQQGSKS-GKPQQKVKIVECGEI 297 (298)
T ss_pred HHHHHHHHhccCCC-CCcceEEEEEecccc
Confidence 47899999888754 799999999999997
No 45
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=87.39 E-value=0.52 Score=38.43 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=28.1
Q ss_pred hhhhhhhccccCCCCCCCccceEEeecCccC
Q psy10359 206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTP 236 (249)
Q Consensus 206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~ 236 (249)
.+++++|++.+++.+++|.++|+|.+|+.+.
T Consensus 130 ~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~~ 160 (166)
T cd01921 130 FDVLEKINDAIVDDDGRPLKDIRIKHTHILD 160 (166)
T ss_pred HHHHHHHHcCCCCCCCCCCCCeEEEEEEEEC
Confidence 4689999999998889999999999998883
No 46
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=84.77 E-value=0.8 Score=37.08 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=27.9
Q ss_pred hhhhhhhccccCCCCCCCccceEEeecCccC
Q psy10359 206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTP 236 (249)
Q Consensus 206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~ 236 (249)
.+++++|++.+++.+++|+++|+|.+|+.+-
T Consensus 124 ~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~ 154 (159)
T cd01923 124 LETLEAMENVPDPGTDRPKEEIKIEDTSVFV 154 (159)
T ss_pred HHHHHHHHcCCCCCCCCCCCCeEEEEeEEEe
Confidence 5789999999998889999999999998873
No 47
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=82.26 E-value=0.99 Score=37.76 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=26.6
Q ss_pred hhhhhhhccccCCC----CCCCccceEEeecCccC
Q psy10359 206 SDVVKKIESSETDG----RDRPVQGVTIVDCGYTP 236 (249)
Q Consensus 206 ~~vv~~iE~~~~~~----~d~P~~~v~i~~~g~l~ 236 (249)
.+++++|++.+++. .++|.++|+|.+|+.+|
T Consensus 156 ~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~v~~ 190 (190)
T PRK10903 156 MDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 190 (190)
T ss_pred HHHHHHHHcCCCCCCCCCCCcccCCeEEEEEEEeC
Confidence 56899999988865 57999999999998775
No 48
>KOG0881|consensus
Probab=81.58 E-value=1.2 Score=34.83 Aligned_cols=27 Identities=37% Similarity=0.657 Sum_probs=24.0
Q ss_pred hhhhhhccccCCCCCCCccceEEeecC
Q psy10359 207 DVVKKIESSETDGRDRPVQGVTIVDCG 233 (249)
Q Consensus 207 ~vv~~iE~~~~~~~d~P~~~v~i~~~g 233 (249)
.|+++|...+++.+|||+.+|+|+.+-
T Consensus 135 ~vikr~G~v~Td~~DRPi~~~kIika~ 161 (164)
T KOG0881|consen 135 EVIKRMGMVETDNSDRPIDEVKIIKAY 161 (164)
T ss_pred HHHHhhcceecCCCCCCccceeeEeee
Confidence 568888999999999999999999864
No 49
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=73.05 E-value=2.1 Score=33.97 Aligned_cols=27 Identities=56% Similarity=0.827 Sum_probs=23.6
Q ss_pred hhhhhhhccccCCCCCCCccceEEeecCc
Q psy10359 206 SDVVKKIESSETDGRDRPVQGVTIVDCGY 234 (249)
Q Consensus 206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~ 234 (249)
.+++.+|++.+++. +|.++|+|.+||.
T Consensus 129 ~~vl~~i~~~~~~~--~p~~~v~I~~cgv 155 (155)
T PF00160_consen 129 MDVLDKIEAGPTDE--RPKQDVTISSCGV 155 (155)
T ss_dssp HHHHHHHHTSBBTT--EBSSTEEEEEEEE
T ss_pred HHHHHHHHCCCCCC--ccCCCeEEEEeEC
Confidence 46899999988876 9999999999983
No 50
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=71.27 E-value=3.6 Score=33.01 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=24.7
Q ss_pred hhhhhhhccccCCCCCCCccceEEeec
Q psy10359 206 SDVVKKIESSETDGRDRPVQGVTIVDC 232 (249)
Q Consensus 206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~ 232 (249)
.+++++|++.+++..++|.++|+|.+|
T Consensus 125 ~dvl~~I~~~~~~~~~~P~~~i~I~~~ 151 (153)
T cd01928 125 FETLDTLEKLPVDKKYRPLEEIRIKDV 151 (153)
T ss_pred HHHHHHHHcCCCCCCCCCcCCeEEEEe
Confidence 569999999999888999999999987
No 51
>PF15284 PAGK: Phage-encoded virulence factor
Probab=70.17 E-value=7.8 Score=26.21 Aligned_cols=27 Identities=7% Similarity=-0.092 Sum_probs=15.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhh
Q psy10359 2 KPFVNKKTCAFAAIVLTVLLVTVTANE 28 (249)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (249)
|...|+.++.+++++.++.+++++-++
T Consensus 1 Mkk~ksifL~l~~~LsA~~FSasamAa 27 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAAGFSASAMAA 27 (61)
T ss_pred ChHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 345566677666666666555444333
No 52
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=69.38 E-value=4.6 Score=29.93 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy10359 7 KKTCAFAAIVLTVLLVTVT 25 (249)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~ 25 (249)
|.+++|+++++++++.++.
T Consensus 4 K~~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLISSE 22 (95)
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 3344444444443333333
No 53
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=67.71 E-value=5 Score=31.99 Aligned_cols=26 Identities=42% Similarity=0.764 Sum_probs=23.4
Q ss_pred hhhhhhhccccCCCCCCCccceEEee
Q psy10359 206 SDVVKKIESSETDGRDRPVQGVTIVD 231 (249)
Q Consensus 206 ~~vv~~iE~~~~~~~d~P~~~v~i~~ 231 (249)
.+++++|++.+++.+++|+++|+|.+
T Consensus 122 ~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 122 MDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred HHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 56899999999988899999999975
No 54
>KOG0865|consensus
Probab=59.00 E-value=7.3 Score=31.96 Aligned_cols=29 Identities=28% Similarity=0.524 Sum_probs=22.4
Q ss_pred hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359 206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT 235 (249)
Q Consensus 206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l 235 (249)
-++|..||..-. .+.+|.++|+|.|||+|
T Consensus 139 m~iv~a~e~~gs-~~gk~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 139 MDIVEAMERFGS-RNGKTSKKITIADCGQL 167 (167)
T ss_pred cchhhhhhccCC-cCCcccccEEEecCCcC
Confidence 467777877443 35799999999999986
No 55
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=56.80 E-value=9.2 Score=31.26 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=25.3
Q ss_pred hhhhhhccccCCCCCCCccceEEeecCccC
Q psy10359 207 DVVKKIESSETDGRDRPVQGVTIVDCGYTP 236 (249)
Q Consensus 207 ~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~ 236 (249)
.++.+|+..+++.+++|+++|+|.+|+.+.
T Consensus 132 ~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~ 161 (171)
T cd01925 132 YNLLKLAEVETDKDERPVYPPKITSVEVLE 161 (171)
T ss_pred HHHHHHhcCCcCCCCCcCCCeEEEEEEEEc
Confidence 446678888888888999999999998873
No 56
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=53.84 E-value=15 Score=28.21 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=30.0
Q ss_pred CcceEEEEecCCCCCCCceEEEEcCCCC-------CCCCCceEEEEEEccHHHHHHHHh
Q psy10359 127 YGSGWLSMANAGKDTNGSQFFITTKKTP-------WLDGRHVVFGKVITGGDIVKKIES 178 (249)
Q Consensus 127 ~~~G~vsm~~~~~~~~~SqFfItl~~~~-------~ld~~~~vFG~Vi~G~~vl~~I~~ 178 (249)
...|.|+....+.+ |.|-+++.| .+-....++||+++|.+.++++..
T Consensus 60 ~~~GDi~Yw~pg~~-----l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 60 VEAGDIAYWPPGGA-----LAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp B-TTEEEEECCCTE-----EEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred ccCceEEEeCCCCE-----EEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 35788888765444 888888775 344568999999999988887754
No 57
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=52.90 E-value=23 Score=26.20 Aligned_cols=24 Identities=8% Similarity=-0.141 Sum_probs=10.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhh
Q psy10359 2 KPFVNKKTCAFAAIVLTVLLVTVT 25 (249)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (249)
-++..-.+.++++++|+.+...++
T Consensus 2 aSK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 2 ASKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhh
Confidence 334444444444444444444443
No 58
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=50.99 E-value=45 Score=25.13 Aligned_cols=38 Identities=11% Similarity=0.231 Sum_probs=25.3
Q ss_pred ceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeec
Q psy10359 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIK 92 (249)
Q Consensus 48 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~ 92 (249)
-...|.|.+.. .-.|..+++=+.-=.. =.|.+.|||+-
T Consensus 48 lq~iGtVSvs~--~gsp~d~~~~La~KAd-----a~GA~yYrIi~ 85 (104)
T PRK14864 48 LQKMGTVSALV--RGSPDDAEREIQAKAN-----AAGADYYVIVM 85 (104)
T ss_pred CceeeEEEEec--CCCHHHHHHHHHHHHH-----HcCCCEEEEEE
Confidence 36889999884 4478887766544333 34677788854
No 59
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=50.08 E-value=14 Score=29.94 Aligned_cols=29 Identities=34% Similarity=0.405 Sum_probs=24.2
Q ss_pred hhhhhhhccccCCC----CCCCccceEEeecCc
Q psy10359 206 SDVVKKIESSETDG----RDRPVQGVTIVDCGY 234 (249)
Q Consensus 206 ~~vv~~iE~~~~~~----~d~P~~~v~i~~~g~ 234 (249)
.+++++|++.+++. .++|.++|+|.+|..
T Consensus 130 ~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~i 162 (164)
T PRK10791 130 MDVVDKIKGVATGRSGMHQDVPKEDVIIESVTV 162 (164)
T ss_pred HHHHHHHHcCcCCCCCccCCCcCCCeEEEEEEE
Confidence 46899999998875 379999999999853
No 60
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=49.12 E-value=13 Score=29.45 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=21.3
Q ss_pred hhhhhhhccccCCCCCCCccceEEe
Q psy10359 206 SDVVKKIESSETDGRDRPVQGVTIV 230 (249)
Q Consensus 206 ~~vv~~iE~~~~~~~d~P~~~v~i~ 230 (249)
.+++++|++.+++ +++|.++|+|.
T Consensus 122 ~dvl~~I~~~~~~-~~~P~~~I~I~ 145 (146)
T cd01922 122 MKVIENMVEVQTQ-TDRPIDEVKIL 145 (146)
T ss_pred HHHHHHHHhCCCC-CCCcCCCeEEe
Confidence 4689999999998 78999999996
No 61
>KOG0883|consensus
Probab=48.14 E-value=15 Score=34.19 Aligned_cols=48 Identities=29% Similarity=0.367 Sum_probs=36.3
Q ss_pred ccceEEeeeeeecc-CCCc------hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359 188 VQGVTIVDCGHTPV-EEPF------SDVVKKIESSETDGRDRPVQGVTIVDCGYT 235 (249)
Q Consensus 188 ~~~i~I~~cg~l~~-~~p~------~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l 235 (249)
.-=|....|-.|.- ..-| .++..+||+.+++..|||..+|+|.++-..
T Consensus 377 QFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~VF 431 (518)
T KOG0883|consen 377 QFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIVF 431 (518)
T ss_pred eEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEEe
Confidence 44466677776643 2234 467789999999999999999999988665
No 62
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=47.30 E-value=1e+02 Score=24.04 Aligned_cols=48 Identities=19% Similarity=0.407 Sum_probs=34.5
Q ss_pred EEEEEEEECceeeeeEEEEEeCCC--Ccc-------hHHHHHHhhcCCCCCccCCCEEEEeecC
Q psy10359 39 IVWFQIQIGEVNVGKIEIGLFGKT--VPR-------TVQNFIELAKRPEGQGYKGSKFHRVIKD 93 (249)
Q Consensus 39 ~v~~di~i~~t~~G~i~ieL~~~~--aP~-------t~~nF~~l~~~~~g~~Y~g~~f~ri~~~ 93 (249)
.+|++ +..||+-+..-.+. ||. +++.|++..+. -..-+.+.|+-++++
T Consensus 5 NIfLE-----sd~grvkl~~~~~~~~c~~~~~~~~~Av~~Fl~~L~k--yI~veeStFylvvrd 61 (130)
T PF06138_consen 5 NIFLE-----SDSGRVKLRYEEPDCKCARTGCEARRAVKHFLSVLKK--YIDVEESTFYLVVRD 61 (130)
T ss_pred EEEEe-----ccCceeEEEEeCCCcccccccchHHHHHHHHHHHHHh--hEEecccEEEEEEec
Confidence 36776 88998877766443 333 57899998876 333578999999887
No 63
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=44.35 E-value=19 Score=28.10 Aligned_cols=26 Identities=54% Similarity=0.769 Sum_probs=23.0
Q ss_pred hhhhhhhccccCCCCCCCccceEEee
Q psy10359 206 SDVVKKIESSETDGRDRPVQGVTIVD 231 (249)
Q Consensus 206 ~~vv~~iE~~~~~~~d~P~~~v~i~~ 231 (249)
.+++.+|+..+++.+++|.++|+|.+
T Consensus 121 ~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 121 MDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred HHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 56899999999988899999999964
No 64
>PHA03001 putative virion core protein; Provisional
Probab=44.31 E-value=1.1e+02 Score=24.04 Aligned_cols=48 Identities=23% Similarity=0.464 Sum_probs=34.0
Q ss_pred EEEEEEEECceeeeeEEEEEe--CCCCcc------hHHHHHHhhcCCCCCccCCCEEEEeecC
Q psy10359 39 IVWFQIQIGEVNVGKIEIGLF--GKTVPR------TVQNFIELAKRPEGQGYKGSKFHRVIKD 93 (249)
Q Consensus 39 ~v~~di~i~~t~~G~i~ieL~--~~~aP~------t~~nF~~l~~~~~g~~Y~g~~f~ri~~~ 93 (249)
.+|++ +..||+-+..- +..+|. ++++|++.... -..-+.+.|+-++++
T Consensus 5 NIfLE-----sd~grvkl~~~~~~~~~~~~~~~~ka~~~fl~~L~k--Yi~v~eStFylvvrd 60 (132)
T PHA03001 5 NIFLE-----TDAGRVKLAIENPDKVCATKAEMRKAINKFLELLKK--YIHVDKSTFYLVVKD 60 (132)
T ss_pred EEEEe-----ccCCceEEEEcCCCccccccchHHHHHHHHHHHHHh--hEEecccEEEEEEec
Confidence 46776 88887766553 344554 67899998866 334588999999887
No 65
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=44.04 E-value=13 Score=33.18 Aligned_cols=15 Identities=20% Similarity=-0.053 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHH
Q psy10359 6 NKKTCAFAAIVLTVL 20 (249)
Q Consensus 6 ~~~~~~~~~~~~~~~ 20 (249)
=|+||.++||+|-|-
T Consensus 7 GRVLLVCALCVLWCg 21 (291)
T PTZ00459 7 GRVLLVCALCVLWCG 21 (291)
T ss_pred chHHHHHHHHHHhcC
Confidence 388888888887764
No 66
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=41.69 E-value=71 Score=27.83 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=19.3
Q ss_pred EEEEeCC----CCcchHHHHHHhhcCC
Q psy10359 55 EIGLFGK----TVPRTVQNFIELAKRP 77 (249)
Q Consensus 55 ~ieL~~~----~aP~t~~nF~~l~~~~ 77 (249)
|+|||.. .||..=+||.++++..
T Consensus 44 VVELfTSQGCsSCPPAd~~l~k~a~~~ 70 (261)
T COG5429 44 VVELFTSQGCSSCPPADANLAKLADDP 70 (261)
T ss_pred EEEEeecCCcCCCChHHHHHHHhccCC
Confidence 6777764 7999999999999874
No 67
>COG5510 Predicted small secreted protein [Function unknown]
Probab=40.75 E-value=40 Score=21.24 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy10359 5 VNKKTCAFAAIVLTVLLV 22 (249)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (249)
|+|..+..++++++++++
T Consensus 2 mk~t~l~i~~vll~s~ll 19 (44)
T COG5510 2 MKKTILLIALVLLASTLL 19 (44)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 455444444444444433
No 68
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.53 E-value=1.9e+02 Score=23.04 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=31.3
Q ss_pred EEEECc--eeeeeEEEEEeCCCC--cc-hHHHHHHhhcCCCCCccCCCEEEEeecCce
Q psy10359 43 QIQIGE--VNVGKIEIGLFGKTV--PR-TVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95 (249)
Q Consensus 43 di~i~~--t~~G~i~ieL~~~~a--P~-t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~ 95 (249)
+++|++ ...|.|-+.+|.+.. |. --.+|-+-|+.-.|. --...|+-+-||.+
T Consensus 33 Tvti~glknkqGqic~aVf~s~qgfp~~~~~~f~ractsit~d-pv~~~f~~Lk~G~Y 89 (151)
T COG4704 33 TVTINGLKNKQGQICFAVFASEQGFPMSDPSRFQRACTSITGD-PVSKSFYGLKPGKY 89 (151)
T ss_pred EEEEcchhhccCcEEEEEEeccccCCCCCchHHhhhcccccCC-chhheeecCCCccE
Confidence 345555 568999999998632 22 245788888764332 22335566666644
No 69
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=39.24 E-value=43 Score=21.61 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=6.9
Q ss_pred hhHHHHHHHHHHHHH
Q psy10359 5 VNKKTCAFAAIVLTV 19 (249)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (249)
|+|.+.++.++++++
T Consensus 2 mKk~i~~i~~~l~~~ 16 (48)
T PRK10081 2 VKKTIAAIFSVLVLS 16 (48)
T ss_pred hHHHHHHHHHHHHHH
Confidence 555555534333333
No 70
>KOG4088|consensus
Probab=38.18 E-value=1.7e+02 Score=23.40 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=16.7
Q ss_pred ccHHHHHHHHhCCCCC-CCCcccceEEeeeeee
Q psy10359 168 TGGDIVKKIESSETDG-RDRPVQGVTIVDCGHT 199 (249)
Q Consensus 168 ~G~~vl~~I~~~~~~~-~~~P~~~i~I~~cg~l 199 (249)
+|...++|-++-.-+. --+|.-.|.+.+=|..
T Consensus 104 egya~~rKaQRdgdk~S~~kpLftvsv~h~G~~ 136 (167)
T KOG4088|consen 104 EGYAQYRKAQRDGDKPSVTKPLFTVSVSHGGLA 136 (167)
T ss_pred hhHHHHHHhhccCCCCccccccEEEEecCCCcc
Confidence 4666666665533222 2345555665555544
No 71
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=36.22 E-value=36 Score=24.61 Aligned_cols=18 Identities=6% Similarity=0.281 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy10359 5 VNKKTCAFAAIVLTVLLV 22 (249)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (249)
|.|++|++.++...++.+
T Consensus 1 MaRRlwiLslLAVtLtVA 18 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVA 18 (100)
T ss_pred CchhhHHHHHHHHHHHHH
Confidence 345666655544444333
No 72
>PRK10540 lipoprotein; Provisional
Probab=34.30 E-value=51 Score=23.11 Aligned_cols=24 Identities=29% Similarity=0.211 Sum_probs=12.8
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHhh
Q psy10359 1 MKPFVNKKTCAFAAIVLTVLLVTV 24 (249)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (249)
||-+++|.+...++++++++++.|
T Consensus 1 ~~~~~kr~~~~~~~~~~a~~L~gC 24 (72)
T PRK10540 1 MFVTSKKMAAAVLAITLAMSLSAC 24 (72)
T ss_pred CchHHHHHHHHHHHHHHHHHHhcc
Confidence 555666655555555444544444
No 73
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=34.14 E-value=36 Score=27.19 Aligned_cols=26 Identities=50% Similarity=0.509 Sum_probs=21.9
Q ss_pred hhhhhhhccccCCCC----CCCccceEEee
Q psy10359 206 SDVVKKIESSETDGR----DRPVQGVTIVD 231 (249)
Q Consensus 206 ~~vv~~iE~~~~~~~----d~P~~~v~i~~ 231 (249)
.+++++|++.+++.+ ++|+.+|+|.+
T Consensus 125 ~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~ 154 (155)
T cd01920 125 MDVVDKIAGVETYSFGSYQDVPVQDVIIES 154 (155)
T ss_pred HHHHHHHHcCCccCCCCcCCCcCCCeEEEE
Confidence 679999999998764 69999999875
No 74
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=33.18 E-value=55 Score=26.65 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=16.7
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHhhh
Q psy10359 1 MKPFVNKKTCAFAAIVLTVLLVTVT 25 (249)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (249)
|++..+|++++++++++++.++.+.
T Consensus 1 M~~~r~rRl~~v~~~~~~~~~a~~L 25 (159)
T PRK13150 1 MNLRRKNRLWVVCAVLAGLGLTTAL 25 (159)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHH
Confidence 6777888887777666655554443
No 75
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=33.06 E-value=48 Score=27.03 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=15.6
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHhh
Q psy10359 1 MKPFVNKKTCAFAAIVLTVLLVTV 24 (249)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (249)
|++..+|++++++++++++.++..
T Consensus 1 M~~~~~rRl~~~~~~~~~~~~a~~ 24 (160)
T PRK13165 1 MNPRRKKRLWLACAVLAGLALTIG 24 (160)
T ss_pred CCccchhhHHHHHHHHHHHHHHHH
Confidence 777888887776666655544433
No 76
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=32.40 E-value=60 Score=26.32 Aligned_cols=27 Identities=7% Similarity=0.069 Sum_probs=17.3
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHhhhhh
Q psy10359 1 MKPFVNKKTCAFAAIVLTVLLVTVTAN 27 (249)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (249)
|++..+|++++++++++++.++.+...
T Consensus 1 M~~~r~rRl~~v~~~~~~~~~a~~Lv~ 27 (155)
T PRK13159 1 MNATRKQRLWLVIGVLTAAALAVTLIV 27 (155)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 667778888776666666555544433
No 77
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=30.64 E-value=52 Score=26.38 Aligned_cols=24 Identities=8% Similarity=0.027 Sum_probs=16.3
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHhh
Q psy10359 1 MKPFVNKKTCAFAAIVLTVLLVTV 24 (249)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (249)
||+..+|++++++++++++..+..
T Consensus 1 m~~~~~~rl~~~~~~~~~~~~~~~ 24 (148)
T PRK13254 1 MMKRKRRRLLIILGALAALGLAVA 24 (148)
T ss_pred CCccchhHHHHHHHHHHHHHHHHH
Confidence 778888888776666665555443
No 78
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=30.42 E-value=62 Score=21.86 Aligned_cols=14 Identities=21% Similarity=-0.069 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q psy10359 7 KKTCAFAAIVLTVL 20 (249)
Q Consensus 7 ~~~~~~~~~~~~~~ 20 (249)
|.+++..+|+++.+
T Consensus 4 Kl~vialLC~aLva 17 (65)
T PF10731_consen 4 KLIVIALLCVALVA 17 (65)
T ss_pred hhhHHHHHHHHHHH
Confidence 44444444444433
No 79
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein. A subset of this model in which nearly all members exhibit genomic context with elements of phosphonate metabolism, particularly the C-P lyase system has been built (TIGR03431) as an equivalog. Nevertheless, there are members of this subfamily (TIGR01098) which show up sporadically on a phylogenetic tree that also show phosphonate context and are most likely competent to transport phosphonates.
Probab=29.14 E-value=1.1e+02 Score=25.67 Aligned_cols=19 Identities=5% Similarity=0.214 Sum_probs=13.3
Q ss_pred eeeEEEEEeCCCCcchHHH
Q psy10359 51 VGKIEIGLFGKTVPRTVQN 69 (249)
Q Consensus 51 ~G~i~ieL~~~~aP~t~~n 69 (249)
.+.|+|...+...|....+
T Consensus 31 ~~~l~vg~~~~~~~~~~~~ 49 (254)
T TIGR01098 31 PKELNFGILPGENASNLTR 49 (254)
T ss_pred CCceEEEECCCCCHHHHHH
Confidence 4678888888877765443
No 80
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=29.05 E-value=58 Score=25.99 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy10359 7 KKTCAFAAIVLTVLLVTVTAN 27 (249)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~ 27 (249)
|++++++++++++++.+|...
T Consensus 2 r~~~s~~Lv~~~~~Lvsc~~p 22 (142)
T TIGR03042 2 RSLASLLLVLLLTFLVSCSGP 22 (142)
T ss_pred hhHHHHHHHHHHHHHHHcCCC
Confidence 567777777766665555443
No 81
>TIGR03561 organ_hyd_perox peroxiredoxin, Ohr subfamily. Pfam model pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein.
Probab=27.37 E-value=2.3e+02 Score=21.74 Aligned_cols=34 Identities=9% Similarity=0.174 Sum_probs=18.1
Q ss_pred eEEEEEeCC-CCcchHHHHHHhhcCCCCCccCCCEEEEeecC
Q psy10359 53 KIEIGLFGK-TVPRTVQNFIELAKRPEGQGYKGSKFHRVIKD 93 (249)
Q Consensus 53 ~i~ieL~~~-~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~ 93 (249)
++.+.+.-+ ..+...+.+++.+.. .|.++|.+.+
T Consensus 92 ~v~l~i~~~~~~~e~~~~l~~~a~~-------~CpVs~~l~~ 126 (134)
T TIGR03561 92 SVELKVTLPGLDQAEAEALVEAAHQ-------VCPYSKATRG 126 (134)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHhc-------cCcchHhhcC
Confidence 334444333 455556666666633 4666766554
No 82
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=26.90 E-value=72 Score=22.93 Aligned_cols=18 Identities=22% Similarity=0.277 Sum_probs=7.5
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy10359 5 VNKKTCAFAAIVLTVLLV 22 (249)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (249)
|++.++..++++++++++
T Consensus 1 MR~~~~aa~a~~~~~~~~ 18 (82)
T PF12071_consen 1 MRRLLLAALALLLAAALL 18 (82)
T ss_pred ChhHHHHHHHHHHHHHHH
Confidence 344444444443333333
No 83
>PTZ00116 signal peptidase; Provisional
Probab=25.92 E-value=2.1e+02 Score=23.93 Aligned_cols=18 Identities=6% Similarity=-0.038 Sum_probs=14.9
Q ss_pred ceeeeeEEEEEeCCCCcc
Q psy10359 48 EVNVGKIEIGLFGKTVPR 65 (249)
Q Consensus 48 ~t~~G~i~ieL~~~~aP~ 65 (249)
+...+.|.++|..|..|.
T Consensus 58 ~~D~a~i~fdl~~DL~~l 75 (185)
T PTZ00116 58 KGDEAVLSLDLSYDMSKA 75 (185)
T ss_pred CceeEEEEEeeccCchhc
Confidence 466889999999998774
No 84
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=23.96 E-value=58 Score=27.91 Aligned_cols=15 Identities=13% Similarity=0.273 Sum_probs=10.0
Q ss_pred CCCcchHHHHHHhhc
Q psy10359 61 KTVPRTVQNFIELAK 75 (249)
Q Consensus 61 ~~aP~t~~nF~~l~~ 75 (249)
..+|.++..|+++..
T Consensus 59 ~~~~~s~~~l~qmi~ 73 (219)
T PRK13415 59 AASSVSAFDFVKLIG 73 (219)
T ss_pred CCCCccHHHHHHHHH
Confidence 456777777777653
No 85
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=23.77 E-value=48 Score=30.56 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=33.0
Q ss_pred cceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEc-cHHHHHHHHh
Q psy10359 128 GSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVIT-GGDIVKKIES 178 (249)
Q Consensus 128 ~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~-G~~vl~~I~~ 178 (249)
.+|.|.+.|..-..-.-+.-|++.+.| -|++.-|+|+|.+ -+.+|+-|..
T Consensus 299 ~~G~ItIdN~~ygRY~GElQI~~~dlp-~d~rvNViG~V~~~d~~LLd~I~~ 349 (357)
T PF05913_consen 299 KRGDITIDNENYGRYKGELQIVKKDLP-ADERVNVIGRVDEEDLPLLDYIKP 349 (357)
T ss_dssp -TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--T
T ss_pred cCceEEEeCCCccccccEEEEEcccCC-CCCCeeEEEEECHHHHHHHHhcCC
Confidence 489999998765555568999999998 5899999999996 5778887753
No 86
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=23.74 E-value=84 Score=21.48 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=20.7
Q ss_pred CCCCceEEEEEEccHHHHHHHHhCCCCCCCC
Q psy10359 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDR 186 (249)
Q Consensus 156 ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~ 186 (249)
+|..-.++|||++| -+++|....+++++.
T Consensus 16 ~d~~G~~vG~vveG--d~k~L~G~~vd~~G~ 44 (64)
T PF12396_consen 16 VDDDGNVVGRVVEG--DPKKLVGKKVDEDGD 44 (64)
T ss_pred ECCCCCEEEEEecC--CHHHhcCCcCCCCCC
Confidence 45566899999999 566666666665544
No 87
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=23.14 E-value=89 Score=17.28 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=7.2
Q ss_pred hhhhHHHHHHHHHH
Q psy10359 3 PFVNKKTCAFAAIV 16 (249)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (249)
.++||.++.++++.
T Consensus 5 ~mmKkil~~l~a~~ 18 (25)
T PF08139_consen 5 SMMKKILFPLLALF 18 (25)
T ss_pred HHHHHHHHHHHHHH
Confidence 35566555544443
No 88
>PF11306 DUF3108: Protein of unknown function (DUF3108); InterPro: IPR021457 This bacterial family of proteins has no known function. ; PDB: 3FZX_A.
Probab=22.29 E-value=1.2e+02 Score=24.94 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=17.4
Q ss_pred cccEEEEEEEECceeeeeEEEEE
Q psy10359 36 VTDIVWFQIQIGEVNVGKIEIGL 58 (249)
Q Consensus 36 ~t~~v~~di~i~~t~~G~i~ieL 58 (249)
.......++...+.+.|+..+++
T Consensus 21 ~~~~~~Y~v~~~g~~~G~a~~~~ 43 (238)
T PF11306_consen 21 PGETLTYDVYYGGIPVGTATFTV 43 (238)
T ss_dssp TT-EEEEEEEETTS-EEEEEEEE
T ss_pred CCEEEEEEEEECCEEeEEEEEEE
Confidence 35667788888888999988888
No 89
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=21.05 E-value=94 Score=26.38 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=10.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhh
Q psy10359 2 KPFVNKKTCAFAAIVLTVLLVTVTAN 27 (249)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (249)
|++|++...++ +.++++++++|+..
T Consensus 1 ~~~~~~~~~~l-~~~As~LL~aC~~~ 25 (206)
T COG3017 1 MPMMKRLLFLL-LALASLLLTACTLT 25 (206)
T ss_pred CchHHHHHHHH-HHHHHHHHHhccCc
Confidence 44554444433 33344444445433
No 90
>COG5572 Predicted integral membrane protein [Function unknown]
Probab=20.80 E-value=1.5e+02 Score=21.80 Aligned_cols=40 Identities=15% Similarity=0.058 Sum_probs=20.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhh-hhhhhcCCCCcccEEEE
Q psy10359 3 PFVNKKTCAFAAIVLTVLLVTVT-ANEKVAKGPKVTDIVWF 42 (249)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~v~~ 42 (249)
.+|.+..+..++..++++.+.+. ++++......-+.++|=
T Consensus 10 s~~~~am~aaAla~alal~A~~spa~aae~ka~AgkEKCYG 50 (104)
T COG5572 10 SLMTRAMTAAALAAALALSAGVSPAAAAEHKAGAGKEKCYG 50 (104)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCchhhcccccccccceeee
Confidence 34556666655555555444333 23333333445677774
No 91
>cd01271 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=20.61 E-value=99 Score=24.10 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=24.9
Q ss_pred ccHHHH-HHHHhCC--CCCCCCcccceEEeeeeeecc
Q psy10359 168 TGGDIV-KKIESSE--TDGRDRPVQGVTIVDCGHTPV 201 (249)
Q Consensus 168 ~G~~vl-~~I~~~~--~~~~~~P~~~i~I~~cg~l~~ 201 (249)
.||||| ++|+++. +.++.++...+.|..+++...
T Consensus 18 ~Gmdvln~AI~~l~~~~~~~~w~~V~vsvaps~v~v~ 54 (124)
T cd01271 18 TGMEILNSAIDNLMSSSNKEDWLSVNVNVAPSTITVI 54 (124)
T ss_pred ccHHHHHHHHHHHHhcCCcccCceEEEEeCCceEEEE
Confidence 399998 6777753 345577888888888888654
No 92
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=20.59 E-value=1.7e+02 Score=18.71 Aligned_cols=24 Identities=17% Similarity=0.018 Sum_probs=15.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhh
Q psy10359 2 KPFVNKKTCAFAAIVLTVLLVTVT 25 (249)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (249)
|+-+.|+.+.++...+.+++.+++
T Consensus 1 MDCvLRs~L~~~F~~lIC~Fl~~~ 24 (54)
T PF06716_consen 1 MDCVLRSYLLLAFGFLICLFLFCL 24 (54)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777666666666554
No 93
>PTZ00102 disulphide isomerase; Provisional
Probab=20.22 E-value=51 Score=30.84 Aligned_cols=16 Identities=0% Similarity=0.073 Sum_probs=12.2
Q ss_pred eeEEEEEeCCCCcchHH
Q psy10359 52 GKIEIGLFGKTVPRTVQ 68 (249)
Q Consensus 52 G~i~ieL~~~~aP~t~~ 68 (249)
..+.|..|..+||. |.
T Consensus 50 ~~~lv~f~a~wC~~-Ck 65 (477)
T PTZ00102 50 EIVLVKFYAPWCGH-CK 65 (477)
T ss_pred CcEEEEEECCCCHH-HH
Confidence 35888899999885 44
Done!