RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10359
(249 letters)
>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin
A, B and H-like cyclophilin-type peptidylprolyl cis-
trans isomerase (PPIase) domain. This family represents
the archetypal cystolic cyclophilin similar to human
cyclophilins A, B and H. PPIase is an enzyme which
accelerates protein folding by catalyzing the cis-trans
isomerization of the peptide bonds preceding proline
residues. These enzymes have been implicated in protein
folding processes which depend on catalytic
/chaperone-like activities. As cyclophilins, Human
hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae
Cpr1 and C. elegans Cyp-3, are inhibited by the
immunosuppressive drug cyclopsporin A (CsA). CsA binds
to the PPIase active site. Cyp-3. S. cerevisiae Cpr1
interacts with the Rpd3 - Sin3 complex and in addition
is a component of the Set3 complex. S. cerevisiae Cpr1
has also been shown to have a role in Zpr1p nuclear
transport. Human cyclophilin H associates with the
[U4/U6.U5] tri-snRNP particles of the splicesome.
Length = 164
Score = 253 bits (648), Expect = 2e-86
Identities = 100/165 (60%), Positives = 118/165 (71%), Gaps = 6/165 (3%)
Query: 38 DIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEG-----QGYKGSKFHRVIK 92
V+F I IG G+I + LF VP+T +NF L +G GYKGS FHRVI
Sbjct: 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIP 60
Query: 93 DFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKK 152
DFMIQGGD+T+G+GTGG SIYG+KF DENFKL H G G LSMANAG +TNGSQFFITT K
Sbjct: 61 DFMIQGGDFTRGNGTGGKSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVK 120
Query: 153 TPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
TPWLDG+HVVFGKV+ G D+VKKIE+ + G +P + V I DCG
Sbjct: 121 TPWLDGKHVVFGKVVEGMDVVKKIENVGS-GNGKPKKKVVIADCG 164
>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H);
Provisional.
Length = 186
Score = 193 bits (491), Expect = 3e-62
Identities = 88/165 (53%), Positives = 110/165 (66%), Gaps = 6/165 (3%)
Query: 39 IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAK---RPEG--QGYKGSKFHRVIKD 93
+V+F + IG + G+I++ LF P+T +NF + R G QGYKG +FHRVIKD
Sbjct: 20 VVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKD 79
Query: 94 FMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKT 153
FMIQGGD+ KGDGTG SIYG KFEDENF H G G LSMAN+G +TNG QFFIT K
Sbjct: 80 FMIQGGDFLKGDGTGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKC 139
Query: 154 PWLDGRHVVFGKVITGGD-IVKKIESSETDGRDRPVQGVTIVDCG 197
WLD +HVVFG+V+ G +V+KIE+ T +RP I +CG
Sbjct: 140 DWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECG 184
>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl
cis- trans isomerases. This family contains eukaryotic,
bacterial and archeal proteins which exhibit a
peptidylprolyl cis- trans isomerases activity (PPIase,
Rotamase) and in addition bind the immunosuppressive
drug cyclosporin (CsA). Immunosuppression in
vertebrates is believed to be the result of the
cyclophilin A-cyclosporin protein drug complex binding
to and inhibiting the protein-phosphatase calcineurin.
PPIase is an enzyme which accelerates protein folding by
catalyzing the cis-trans isomerization of the peptide
bonds preceding proline residues. Cyclophilins are a
diverse family in terms of function and have been
implicated in protein folding processes which depend on
catalytic /chaperone-like activities. This group
contains human cyclophilin 40, a co-chaperone of the
hsp90 chaperone system; human cyclophilin A, a
chaperone in the HIV-1 infectious process and; human
cyclophilin H, a component of the U4/U6 snRNP, whose
isomerization or chaperoning activities may play a role
in RNA splicing. .
Length = 146
Score = 183 bits (466), Expect = 5e-59
Identities = 83/149 (55%), Positives = 99/149 (66%), Gaps = 6/149 (4%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
+ G+I I L+G P+TV+NF+ LA+ G Y G+ FHRVI FMIQGGD T
Sbjct: 3 DTTKGRIVIELYGDEAPKTVENFLSLAR---GGFYDGTTFHRVIPGFMIQGGDPT--GTG 57
Query: 108 GGASIYGDKFEDENFKLS-HYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKV 166
GG S G KF DENF L H+ G LSMANAG +TNGSQFFITT TP LDG+H VFGKV
Sbjct: 58 GGGSGPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKV 117
Query: 167 ITGGDIVKKIESSETDGRDRPVQGVTIVD 195
+ G D+V KIE +TD RP++ VTI D
Sbjct: 118 VEGMDVVDKIERGDTDENGRPIKPVTISD 146
>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional.
Length = 183
Score = 182 bits (464), Expect = 3e-58
Identities = 85/164 (51%), Positives = 100/164 (60%), Gaps = 7/164 (4%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIEL------AKRPEGQGYKGSKFHRVIKD 93
V+F I I G+I LF P+T +NF L + YKGS FHR+I
Sbjct: 18 VFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQ 77
Query: 94 FMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKT 153
FM QGGD T +GTGG SIYG KF DENFKL H G LSMANAG +TNGSQFFITT
Sbjct: 78 FMCQGGDITNHNGTGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPC 137
Query: 154 PWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
PWLDG+HVVFGKVI G ++V+ +E T P + V + DCG
Sbjct: 138 PWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGYPKKPVVVTDCG 180
>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl
cis-trans isomerase/CLD. The peptidyl-prolyl cis-trans
isomerases, also known as cyclophilins, share this
domain of about 109 amino acids. Cyclophilins have been
found in all organisms studied so far and catalyze
peptidyl-prolyl isomerisation during which the peptide
bond preceding proline (the peptidyl-prolyl bond) is
stabilised in the cis conformation. Mammalian
cyclophilin A (CypA) is a major cellular target for the
immunosuppressive drug cyclosporin A (CsA). Other roles
for cyclophilins may include chaperone and cell
signalling function.
Length = 144
Score = 178 bits (454), Expect = 3e-57
Identities = 71/149 (47%), Positives = 89/149 (59%), Gaps = 9/149 (6%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
N+G+I I LFG P+TV+NF+ L K+ Y G+ FHRVI FMIQGGD T
Sbjct: 5 TTNLGRIVIELFGDEAPKTVENFLSLCKKG---FYDGTIFHRVIPGFMIQGGDPTGPGTG 61
Query: 108 GGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVI 167
G SI DE + G LSMA +G ++ GSQFFIT P LDG + VFG+V+
Sbjct: 62 GKRSI-----PDEFVSKLKHKRGTLSMARSGPNSAGSQFFITLGDAPHLDGGYTVFGRVV 116
Query: 168 TGGDIVKKIESSETDGRDRPVQGVTIVDC 196
G D+V+KIE ETDG DRP++ V I C
Sbjct: 117 EGMDVVEKIEKVETDG-DRPLKDVKITSC 144
>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) -
cyclophilin family [Posttranslational modification,
protein turnover, chaperones].
Length = 158
Score = 175 bits (445), Expect = 1e-55
Identities = 75/157 (47%), Positives = 96/157 (61%), Gaps = 13/157 (8%)
Query: 46 IGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGD 105
I E N G I I L+ P+TV NF++L K Y G+ FHRVI FMIQGGD T GD
Sbjct: 3 ILETNKGDITIELYPDKAPKTVANFLQLVKEG---FYDGTIFHRVIPGFMIQGGDPTGGD 59
Query: 106 GTGGASIYGDKFEDENFKLSH--YGSGWLSMANAG-KDTNGSQFFITTKKTPWLDGRHVV 162
GTGG F+DENF L+ + G LSMA AG ++NGSQFFIT P+LDG++ V
Sbjct: 60 GTGGPGP---PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTV 116
Query: 163 FGKVITGGDIVKKIESSETDG----RDRPVQGVTIVD 195
FG+V+ G D+V KI++ +TD +D P V I+
Sbjct: 117 FGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILS 153
>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like:
cyclophilin 2-like peptidylprolyl cis- trans isomerase
(PPIase) domain similar to Schizosaccharomyces pombe
cyp-2. These proteins bind their respective SNW
chromatin binding protein in autologous systems, in a
CsA independent manner indicating interaction with a
surface outside the PPIase active site. SNW proteins
play a basic and broad range role in signaling.
Length = 146
Score = 165 bits (420), Expect = 4e-52
Identities = 80/148 (54%), Positives = 102/148 (68%), Gaps = 6/148 (4%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
E +G+I + L+ P+T +NF ELAKR Y G+ FHR+IKDFMIQGGD T G G
Sbjct: 3 ETTMGEITLELYWNHAPKTCKNFYELAKRGY---YNGTIFHRLIKDFMIQGGDPT-GTGR 58
Query: 108 GGASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKV 166
GGASIYG KFEDE + +L H G+G LSMANAG +TNGSQFFIT TPWLDG+H +FG+V
Sbjct: 59 GGASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRV 118
Query: 167 ITGGDIVKKIESSETDGRDRPVQGVTIV 194
G +++ + +T DRP+ V I+
Sbjct: 119 SKGMKVIENMVEVQTQ-TDRPIDEVKIL 145
>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type
peptidylprolyl cis- trans isomerases (cyclophilins)
having a WD40 domain. This group consists of several
hypothetical and putative eukaryotic and bacterial
proteins which have a cyclophilin domain and a WD40
domain. Function of the protein is not known.
Length = 148
Score = 165 bits (420), Expect = 5e-52
Identities = 78/145 (53%), Positives = 99/145 (68%), Gaps = 5/145 (3%)
Query: 52 GKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGAS 111
G I I LF + P+TV+NF A+ Y + FHRVIK FMIQ GD T GDGTGG S
Sbjct: 7 GDIHIRLFPEEAPKTVENFTTHARNGY---YNNTIFHRVIKGFMIQTGDPT-GDGTGGES 62
Query: 112 IYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGG 170
I+G +FEDE + L H LSMANAG +TNGSQFFITT TPWLD +H VFG+V+ G
Sbjct: 63 IWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGM 122
Query: 171 DIVKKIESSETDGRDRPVQGVTIVD 195
D+V++IE+ +TD DRP + + I++
Sbjct: 123 DVVQRIENVKTDKNDRPYEDIKIIN 147
>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type
peptidylprolyl cis- trans isomerases (cyclophilins)
having a modified RING finger domain. This group
includes the nuclear proteins, Human hCyP-60 and
Caenorhabditis elegans MOG-6 which, compared to the
archetypal cyclophilin Human cyclophilin A exhibit
reduced peptidylprolyl cis- trans isomerase activity and
lack a residue important for cyclophilin binding. Human
hCyP-60 has been shown to physically interact with the
proteinase inhibitor peptide eglin c and; C. elegans
MOG-6 to physically interact with MEP-1, a nuclear zinc
finger protein. MOG-6 has been shown to function in
germline sex determination.
Length = 159
Score = 159 bits (404), Expect = 2e-49
Identities = 69/149 (46%), Positives = 93/149 (62%), Gaps = 5/149 (3%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
N G + + L P+ +NFI+L K+ Y G+ FHR I++FMIQGGD T G G
Sbjct: 5 HTNKGDLNLELHCDKAPKACENFIKLCKKGY---YDGTIFHRSIRNFMIQGGDPT-GTGR 60
Query: 108 GGASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKV 166
GG SI+G F+DE LSH G G LSMAN+G +TNGSQFFIT + LDG+H VFG+V
Sbjct: 61 GGESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRV 120
Query: 167 ITGGDIVKKIESSETDGRDRPVQGVTIVD 195
+ G + ++ +E+ G DRP + + I D
Sbjct: 121 VGGLETLEAMENVPDPGTDRPKEEIKIED 149
>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like:
cyclophilin-type peptidylprolyl cis- trans isomerase)
(PPIase) domain similar to Caenorhabditis elegans
cyclophilin 16. C. elegans CeCYP-16, compared to the
archetypal cyclophilin Human cyclophilin A has, a
reduced peptidylprolyl cis- trans isomerase activity, is
cyclosporin insensitive and shows an altered substrate
preference favoring, hydrophobic, acidic or amide amino
acids. Most members of this subfamily have a glutamate
residue in the active site at the position equivalent to
a tryptophan (W121 in Human cyclophilin A), which has
been shown to be important for cyclophilin binding.
Length = 171
Score = 147 bits (372), Expect = 2e-44
Identities = 75/165 (45%), Positives = 98/165 (59%), Gaps = 10/165 (6%)
Query: 51 VGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGA 110
G I+I L+ K P+ +NFI+L EG Y + FHRV+ F+IQGGD T G GTGG
Sbjct: 14 AGDIDIELWSKEAPKACRNFIQLCL--EGY-YDNTIFHRVVPGFIIQGGDPT-GTGTGGE 69
Query: 111 SIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITG 169
SIYG+ F+DE + +L G + MANAG D+NGSQFF T K L+ +H +FGKV TG
Sbjct: 70 SIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKV-TG 128
Query: 170 GDI--VKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVVKKI 212
I + K+ ETD +RPV I +E PF D+V +I
Sbjct: 129 DTIYNLLKLAEVETDKDERPVYPPKITSV--EVLENPFDDIVPRI 171
>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like. Proteins
similar to Human cyclophilin-like peptidylprolyl cis-
trans isomerase (PPIL3). Members of this family lack a
key residue important for cyclosporin binding: the
tryptophan residue corresponding to W121 in human
hCyP-18a; most members have a histidine at this
position. The exact function of the protein is not
known.
Length = 153
Score = 144 bits (364), Expect = 1e-43
Identities = 71/150 (47%), Positives = 89/150 (59%), Gaps = 10/150 (6%)
Query: 50 NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG 109
N+G I+I LF P+ +NF+ L Y G FHR IK FM+Q GD T G G GG
Sbjct: 8 NLGDIKIELFCDDCPKACENFLALCA---SGYYNGCIFHRNIKGFMVQTGDPT-GTGKGG 63
Query: 110 ASIYGDKFEDENFK-LSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVIT 168
SI+G KFEDE + L H G +SMAN G +TNGSQFFIT K P LDG++ VFGKVI
Sbjct: 64 ESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVID 123
Query: 169 GGDIVKKIESSETDGRDRP-----VQGVTI 193
G + + +E D + RP ++ VTI
Sbjct: 124 GFETLDTLEKLPVDKKYRPLEEIRIKDVTI 153
>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type
peptidylprolyl cis- trans isomerase domain occuring with
a C-terminal RNA recognition motif domain (RRM). This
subfamily of the cyclophilin domain family contains a
number of eukaryotic cyclophilins having the RRM domain
including the nuclear proteins: human hCyP-57,
Arabidopsis thaliana AtCYP59, Caenorhabditis elegans
CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241
protein has been shown to have a role in cell
morphogenesis.
Length = 166
Score = 112 bits (281), Expect = 6e-31
Identities = 66/170 (38%), Positives = 91/170 (53%), Gaps = 17/170 (10%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
E +G + I LF P NF++L K + Y F+ V KDF+ Q GD T G G
Sbjct: 3 ETTLGDLVIDLFTDECPLACLNFLKLCKL---KYYNFCLFYNVQKDFIAQTGDPT-GTGA 58
Query: 108 GGASIYGDK-------FEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFIT-TKKTPWLDG 158
GG SIY FE E L H G +SM NAG + NGSQF+IT + +LDG
Sbjct: 59 GGESIYSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDG 118
Query: 159 RHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPV-EEPFSD 207
+H VFG+V+ G D+++KI + D RP++ + I HT + ++PF D
Sbjct: 119 KHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRI---KHTHILDDPFPD 165
>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional.
Length = 249
Score = 82.2 bits (203), Expect = 9e-19
Identities = 55/174 (31%), Positives = 80/174 (45%), Gaps = 13/174 (7%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQ--------GYKGSKFHRV- 90
+ I IG+V G++ LF VP TV+NF L G Y + H V
Sbjct: 55 AFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVD 114
Query: 91 IKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITT 150
+ +I G+ + S G DE ++ H G L+M + G T+GS F IT
Sbjct: 115 RNNNIIVLGELD----SFNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITL 170
Query: 151 KKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEP 204
+P LD + VVFGK + +++K+ES D RP+ VT+ CG E+P
Sbjct: 171 GPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCGALTGEKP 224
>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like:
cyclophilin-type A-like peptidylprolyl cis- trans
isomerase (PPIase) domain similar to the cytosolic E.
coli cyclophilin A and Streptomyces antibioticus
SanCyp18. Compared to the archetypal cyclophilin Human
cyclophilin A, these have reduced affinity for
cyclosporin A. E. coli cyclophilin A has a similar
peptidylprolyl cis- trans isomerase activity to the
human cyclophilin A. Most members of this subfamily
contain a phenylalanine residue at the position
equivalent to Human cyclophilin W121, where a tyrptophan
has been shown to be important for cyclophilin binding.
Length = 155
Score = 74.4 bits (183), Expect = 1e-16
Identities = 53/156 (33%), Positives = 75/156 (48%), Gaps = 16/156 (10%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
+ ++G I + L+ P TV+NF+ ++ Y + FHRVI F+IQGG +T D
Sbjct: 3 QTSLGDIVVELYDDKAPITVENFLAYVRKGF---YDNTIFHRVISGFVIQGGGFTP-DLA 58
Query: 108 GGASIYGDKFEDENFKLSHYGSGWLSMA-NAGKDTNGSQFFITTKKTPWLD-----GRHV 161
++ K E N + G+ ++MA D+ SQFFI K LD +
Sbjct: 59 QKETLKPIKNEAGNGLSNTRGT--IAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYT 116
Query: 162 VFGKVITGGDIVKKIESSETDGR----DRPVQGVTI 193
VFG+V G D+V KI ET D PVQ V I
Sbjct: 117 VFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVII 152
>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase
A); Provisional.
Length = 190
Score = 72.2 bits (177), Expect = 2e-15
Identities = 52/154 (33%), Positives = 76/154 (49%), Gaps = 16/154 (10%)
Query: 50 NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG 109
+ G IE+ L + P +V+NF++ G Y + FHRVI FMIQGG +T+
Sbjct: 36 SAGNIELELNSQKAPVSVKNFVDYVN--SGF-YNNTTFHRVIPGFMIQGGGFTE-QMQQK 91
Query: 110 ASIYGDKFEDENFKLSHYGSGWLSMA-NAGKDTNGSQFFITTKKTPWLD-GR----HVVF 163
K E +N + G+ ++MA A KD+ SQFFI +LD G+ + VF
Sbjct: 92 KPNPPIKNEADNGLRNTRGT--IAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVF 149
Query: 164 GKVITGGDIVKKIESSETDG----RDRPVQGVTI 193
GKV+ G D+ KI T ++ P + V I
Sbjct: 150 GKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVI 183
>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like:
cyclophilin-type peptidylprolyl cis- trans isomerases
(cyclophilins) similar ot the Spinach thylakoid lumen
protein TLP40. Compared to the archetypal cyclophilin
Human cyclophilin A, these proteins have similar
peptidylprolyl cis- trans isomerase activity and reduced
affinity for cyclosporin A. Spinach TLP40 has been shown
to have a dual function as a folding catalyst and
regulator of dephosphorylation.
Length = 176
Score = 66.3 bits (162), Expect = 1e-13
Identities = 51/176 (28%), Positives = 71/176 (40%), Gaps = 37/176 (21%)
Query: 49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTG 108
+ G I I L G P T NF++L +R Y G +FHRV F++Q GD +
Sbjct: 4 TDNGTITIVLDGYNAPVTAGNFVDLVER---GFYDGMEFHRVEGGFVVQTGDPQGKNPGF 60
Query: 109 --------------------GASIYGDKFE-----DENFKLSHYGSGWLSMANAGKDTNG 143
+YG E DE L G ++MA D N
Sbjct: 61 PDPETGKSRTIPLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNS 120
Query: 144 --SQFFI-------TTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQG 190
SQFF T + LDGR+ VFG V G DI+++++ + R V+G
Sbjct: 121 ASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELKVGDKIESARVVEG 176
>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase
B); Provisional.
Length = 164
Score = 55.6 bits (134), Expect = 1e-09
Identities = 53/160 (33%), Positives = 72/160 (45%), Gaps = 25/160 (15%)
Query: 50 NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKG--DGT 107
N G I I F P TV+NF++ + EG Y + FHRVI FMIQGG + G
Sbjct: 7 NHGDIVIKTFDDKAPETVKNFLDYCR--EG-FYNNTIFHRVINGFMIQGGGFEPGMKQKA 63
Query: 108 GGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGS-QFFITTKKTPWLDGR------- 159
I K E N + G+ L+MA + + QFFI +L+
Sbjct: 64 TKEPI---KNEANNGLKNTRGT--LAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGW 118
Query: 160 -HVVFGKVITGGDIVKKIESSETDGR-----DRPVQGVTI 193
+ VF +V+ G D+V KI+ T GR D P + V I
Sbjct: 119 GYCVFAEVVEGMDVVDKIKGVAT-GRSGMHQDVPKEDVII 157
>gnl|CDD|163667 cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain.
PrpA and PrpB are bacterial type I serine/threonine and
tyrosine phosphatases thought to modulate the expression
of proteins that protect the cell upon accumulation of
misfolded proteins in the periplasm. The PPP
(phosphoprotein phosphatase) family, to which PrpA and
PrpB belong, is one of two known protein phosphatase
families specific for serine and threonine. This family
also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5,
PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 207
Score = 30.7 bits (70), Expect = 0.44
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 182 DGRDRPVQGVTIVDCGHTPVEEPF 205
+ +P++GV V GHTPV+ P
Sbjct: 160 KAQTQPIKGVDAVVHGHTPVKRPL 183
>gnl|CDD|219120 pfam06646, Mycoplasma_p37, High affinity transport system protein
p37. This family consists of several high affinity
transport system protein p37 sequences which are
specific to Mycoplasma species. The p37 gene is part of
an operon encoding two additional proteins which are
highly similar to components of the periplasmic
binding-protein-dependent transport systems of
Gram-negative bacteria.It has been suggested that p37 is
part of a homologous, high-affinity transport system in
M. hyorhinis, a Gram-positive bacterium.
Length = 331
Score = 29.4 bits (66), Expect = 1.8
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 13/50 (26%)
Query: 55 EIGLFGKTVPRTVQN-----FIELAKRPE-----GQGYKGSKFHRVIKDF 94
+IG+F K + VQN FIELAK + GY G ++ I DF
Sbjct: 272 DIGIFNKFLDSEVQNLISETFIELAKNNQDTYGPSLGYNG---YKKITDF 318
>gnl|CDD|240010 cd04639, CBS_pair_26, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase).
Length = 111
Score = 27.3 bits (61), Expect = 4.0
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 154 PWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVVKKIE 213
P +DG + G ++T D+++ + G D PV+GV D V++ ++
Sbjct: 28 PVVDGDGHLVG-LLTRDDLIRALAE---GGPDAPVRGVMRRDFPTVSPSATLDAVLRLMQ 83
Query: 214 SSE------TDGRDRPVQGVTIVDCG 233
DG R V VT+ + G
Sbjct: 84 QGGAPAVPVVDGSGRLVGLVTLENVG 109
>gnl|CDD|223404 COG0327, COG0327, Uncharacterized conserved protein [Function
unknown].
Length = 250
Score = 27.7 bits (62), Expect = 5.4
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 189 QGVTIVDCGHTPVEEPFSDVVKKIESSETD 218
G++++D GH E P + ++
Sbjct: 209 LGLSVIDAGHYATERPGLKALAELLKELLG 238
>gnl|CDD|211621 TIGR01039, atpD, ATP synthase, F1 beta subunit. The sequences of
ATP synthase F1 alpha and beta subunits are related and
both contain a nucleotide-binding site for ATP and ADP.
They have a common amino terminal domain but vary at the
C-terminus. The beta chain has catalytic activity, while
the alpha chain is a regulatory subunit. Proton
translocating ATP synthase, F1 beta subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), A subunit [Energy metabolism,
ATP-proton motive force interconversion].
Length = 461
Score = 28.1 bits (63), Expect = 5.4
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 169 GGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVVKKIESSETDGRDRPVQGVT 228
G D V+ I TDG V+G+ ++D G P+ P GR V G
Sbjct: 48 GDDTVRTIAMGSTDGL---VRGLEVIDTGA-PISVPVGKETL--------GRIFNVLGEP 95
Query: 229 IVDCGYTPVEEPFSVEKD 246
I + G P +E + + +
Sbjct: 96 IDEKGPIPAKERWPIHRK 113
>gnl|CDD|226870 COG4464, CapC, Capsular polysaccharide biosynthesis protein
[Carbohydrate transport and metabolism / Cell envelope
biogenesis, outer membrane].
Length = 254
Score = 27.0 bits (60), Expect = 9.7
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIE 72
+V + GLFGK + + IE
Sbjct: 161 QVTSSSLA-GLFGKKIKKFALQLIE 184
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.138 0.411
Gapped
Lambda K H
0.267 0.0833 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,695,934
Number of extensions: 1200723
Number of successful extensions: 1021
Number of sequences better than 10.0: 1
Number of HSP's gapped: 976
Number of HSP's successfully gapped: 39
Length of query: 249
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 155
Effective length of database: 6,768,326
Effective search space: 1049090530
Effective search space used: 1049090530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (25.9 bits)