RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10359
(249 letters)
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin,
endoplasmic reticulum, glycoprot isomerase, rotamase;
1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A*
2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Length = 188
Score = 301 bits (772), Expect = e-105
Identities = 119/181 (65%), Positives = 150/181 (82%)
Query: 26 ANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGS 85
+++ KGPKVT V+F ++IG+ +VG++ GLFGKTVP+TV NF+ LA +G GYK S
Sbjct: 4 GSDEKKKGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNS 63
Query: 86 KFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQ 145
KFHRVIKDFMIQGGD+T+GDGTGG SIYG++F DENFKL HYG GW+SMANAGKDTNGSQ
Sbjct: 64 KFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQ 123
Query: 146 FFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPF 205
FFITT KT WLDG+HVVFGKV+ G ++V+K+ES++TD RD+P++ V I DCG VE+PF
Sbjct: 124 FFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKPF 183
Query: 206 S 206
+
Sbjct: 184 A 184
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin,
peptidyl-prolyl-CIS/trans isomerase, spliceosome,
U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
SCOP: b.62.1.1 PDB: 1qoi_A
Length = 177
Score = 287 bits (738), Expect = e-100
Identities = 92/173 (53%), Positives = 110/173 (63%), Gaps = 5/173 (2%)
Query: 30 VAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFI-----ELAKRPEGQGYKG 84
VA V +V+F + IG VG+++I LF VP+T +NF E K GYKG
Sbjct: 3 VANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKG 62
Query: 85 SKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGS 144
S FHRVIKDFMIQGGD+ GDGTG ASIY F DENFKL H G LSMAN+G TNG
Sbjct: 63 STFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGC 122
Query: 145 QFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
QFFIT K WLDG+HVVFGK+I G +++KIE+ T ++P V I CG
Sbjct: 123 QFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCG 175
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane,
repeat, rotamase, peptidylprolyl isomerase, structural
genomics; 2.00A {Homo sapiens}
Length = 192
Score = 286 bits (735), Expect = 2e-99
Identities = 87/180 (48%), Positives = 114/180 (63%), Gaps = 8/180 (4%)
Query: 31 AKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG--------Y 82
P+ + F I+I VG+I LF P+T +NF+ L +G G Y
Sbjct: 13 GLVPRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCY 72
Query: 83 KGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTN 142
KGS FHRV+K+FMIQGGD+++G+G GG SIYG F+DENF L H + LSMAN GK TN
Sbjct: 73 KGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTN 132
Query: 143 GSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVE 202
GSQFFITTK P LDG HVVFG VI+G +++++IE+ +TD RP V ++DCG +
Sbjct: 133 GSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLATK 192
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa,
KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A*
3bt8_A
Length = 172
Score = 285 bits (731), Expect = 4e-99
Identities = 98/167 (58%), Positives = 118/167 (70%), Gaps = 1/167 (0%)
Query: 31 AKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRV 90
P+VT V+F + I +G+I IGLFGK P T +NF +L G GYK S FHRV
Sbjct: 5 HHEPEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRV 64
Query: 91 IKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITT 150
I++FMIQGGD+T DGTGG SIYG+KF DEN + H G LSMANAG +TNGSQFFITT
Sbjct: 65 IQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNTNGSQFFITT 123
Query: 151 KKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
TPWLDGRHVVFGKV+ G D+V +IE ++T+ DRPV+ V IV G
Sbjct: 124 APTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASG 170
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP:
b.62.1.1 PDB: 1a33_A 1c5f_A*
Length = 177
Score = 282 bits (724), Expect = 6e-98
Identities = 84/173 (48%), Positives = 108/173 (62%), Gaps = 8/173 (4%)
Query: 33 GPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG--------YKG 84
K V+ + I G+I + L+ PRT NF+ L G G YKG
Sbjct: 2 SKKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKG 61
Query: 85 SKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGS 144
S FHRVIK+FMIQGGD+TKGDGTGG SIYG F+DE F + H +SMAN G +TNGS
Sbjct: 62 STFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGS 121
Query: 145 QFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
QFFITT P L+ HVVFGKV++G ++V KIE +T+ ++RP+ V I++CG
Sbjct: 122 QFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCG 174
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW,
decode, cytoplasm, rotamase, structural genomics; HET:
PG5; 1.95A {Encephalitozoon cuniculi}
Length = 193
Score = 282 bits (724), Expect = 1e-97
Identities = 85/178 (47%), Positives = 113/178 (63%), Gaps = 1/178 (0%)
Query: 26 ANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGS 85
+ + + V+F + E ++G+I + L VP+T +NF L +RP+G+GYKGS
Sbjct: 16 TQGPGSMAKEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGS 75
Query: 86 KFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQ 145
FHR+I FM+QGGDYT +GTGG SIYG+KF DENF+L H G LSMAN G TNGSQ
Sbjct: 76 TFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQ 135
Query: 146 FFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETD-GRDRPVQGVTIVDCGHTPVE 202
FFIT KT WLD +HVVFG+V+ G D+V KI ++ G+ + + I DCG
Sbjct: 136 FFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVLGSN 193
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA
splicing, alternative splicing, nucleus, rotamase,
cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A*
2gw2_A
Length = 179
Score = 281 bits (722), Expect = 1e-97
Identities = 87/176 (49%), Positives = 111/176 (63%), Gaps = 9/176 (5%)
Query: 31 AKGPKVTD-IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG-------- 81
A G KV +F I I G++ LF P+T +NF L +G G
Sbjct: 2 AMGIKVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLH 61
Query: 82 YKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDT 141
YK FHRV+KDFM+QGGD+++G+G GG SIYG FEDE+F + H LSMAN GKDT
Sbjct: 62 YKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDT 121
Query: 142 NGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
NGSQFFITTK TP LDG HVVFG+VI+G ++V++IE+ +TD +P V I+ CG
Sbjct: 122 NGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCG 177
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization,
structural genomics consortium, SGC, alternative
splicing, mRNA processing; 1.61A {Homo sapiens} SCOP:
b.62.1.1 PDB: 3uch_A 1zmf_A
Length = 173
Score = 277 bits (711), Expect = 6e-96
Identities = 86/170 (50%), Positives = 112/170 (65%), Gaps = 1/170 (0%)
Query: 28 EKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKF 87
+AK + V+ I+IG G+I++ L VP T +NF L +G G+KGS F
Sbjct: 2 SPIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSF 61
Query: 88 HRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFF 147
HR+I FM QGGD+T +GTGG SIYG KF+DENF L H G G LSMAN+G +TNGSQFF
Sbjct: 62 HRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFF 121
Query: 148 ITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
+T KT WLDG+HVVFG+V G D++++IE+ + +P Q V I DCG
Sbjct: 122 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKD-GKPKQKVIIADCG 170
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase,
RNA-binding, cyclosporin, cyclophilin, beta-barrel;
1.50A {Schistosoma mansoni} PDB: 2ck1_A
Length = 172
Score = 277 bits (710), Expect = 8e-96
Identities = 87/169 (51%), Positives = 109/169 (64%), Gaps = 1/169 (0%)
Query: 29 KVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFH 88
+ K + V+F I+IG + G+I + L VPRT +NF L G GY FH
Sbjct: 2 RTKKQKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFH 61
Query: 89 RVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFI 148
RVI FM QGGD+ KGDGTGG SIYG KF+DENF+L H G G LSMAN+G +TNGSQFFI
Sbjct: 62 RVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFI 121
Query: 149 TTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
T K WLDG+HVVFG+V+ G ++VKK+ES + + + V I CG
Sbjct: 122 CTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKS-GKVKEPVIISRCG 169
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic,
inhibito isomerase-isomerase inhibitor complex; HET:
EA4; 2.14A {Homo sapiens}
Length = 184
Score = 273 bits (700), Expect = 4e-94
Identities = 88/173 (50%), Positives = 113/173 (65%), Gaps = 1/173 (0%)
Query: 25 TANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKG 84
+ E + V V+F I + +G++ LF VP+T +NF L+ +G GYKG
Sbjct: 10 SGRENLYFQGMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKG 69
Query: 85 SKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGS 144
S FHR+I FM QGGD+T+ +GTGG SIYG+KFEDENF L H G G LSMANAG +TNGS
Sbjct: 70 SCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGS 129
Query: 145 QFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
QFFI T KT WLDG+HVVFGKV G +IV+ +E + + + +TI DCG
Sbjct: 130 QFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRN-GKTSKKITIADCG 181
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase,
isomerase-immunosuppressant compl; HET: BMT; 1.47A
{Moniliophthora perniciosa} PDB: 3o7t_A
Length = 164
Score = 269 bits (691), Expect = 5e-93
Identities = 87/158 (55%), Positives = 109/158 (68%), Gaps = 1/158 (0%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGG 99
V+F I I + G+I L+ + VP+T +NF ELA G GYK S FHRVI FM+QGG
Sbjct: 5 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGG 64
Query: 100 DYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGR 159
D+T+ +GTGG SIYG+KF DENF++ H G LSMANAG +TNGSQFFITT T WLDG+
Sbjct: 65 DFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGK 124
Query: 160 HVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
HVVFG+VI G DIV+K+E + + + I DCG
Sbjct: 125 HVVFGEVIEGLDIVRKVEGKGSA-SGKTNATIKITDCG 161
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin D; HET: BMT MLE
CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A*
3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A*
3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A*
2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Length = 165
Score = 268 bits (689), Expect = 1e-92
Identities = 85/159 (53%), Positives = 104/159 (65%), Gaps = 1/159 (0%)
Query: 39 IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQG 98
+V+ + +G++ + L VP+T +NF L +G GYKGS FHRVI FM Q
Sbjct: 5 LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQA 64
Query: 99 GDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDG 158
GD+T +GTGG SIYG +F DENF L H G G LSMANAG +TNGSQFFI T KT WLDG
Sbjct: 65 GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 124
Query: 159 RHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
+HVVFG VI G D+VKKIES + R + + I DCG
Sbjct: 125 KHVVFGHVIEGMDVVKKIESFGSKS-GRTSKKIVITDCG 162
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp
F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus}
SCOP: b.62.1.1
Length = 172
Score = 268 bits (687), Expect = 2e-92
Identities = 91/168 (54%), Positives = 113/168 (67%), Gaps = 4/168 (2%)
Query: 34 PKVT-DIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIK 92
+V D+ + + E VG+I LF K VP+T +NF EL KRP G+GY+ S FHR+I
Sbjct: 3 SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIP 62
Query: 93 DFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKK 152
+FMIQGGD+T+G+GTGG SIYGDKF DENF H G LSMANAG +TNGSQFFITT
Sbjct: 63 NFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAV 122
Query: 153 TPWLDGRHVVFGKVI--TGGDIVKKIESSETD-GRDRPVQGVTIVDCG 197
T WLDG+HVVFG+V +VK+IE+ + G R IV+CG
Sbjct: 123 TSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCG 170
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, cyclophilin-cyclosporin complex,
immunosuppressant, cyclophilin; HET: BMT; 2.1A
{Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Length = 170
Score = 267 bits (685), Expect = 5e-92
Identities = 81/165 (49%), Positives = 97/165 (58%), Gaps = 7/165 (4%)
Query: 39 IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIEL------AKRPEGQGYKGSKFHRVIK 92
V+F I I N G+I LF PRT +NF L R + YK S FHR+I
Sbjct: 5 KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIP 64
Query: 93 DFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKK 152
FM QGGD T G+G+GG SIYG F DENF + H G LSMANAG +TN SQFFIT
Sbjct: 65 QFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVP 124
Query: 153 TPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
PWLDG+HVVFGKVI G ++V+++E + V I DCG
Sbjct: 125 CPWLDGKHVVFGKVIEGMNVVREMEKEGAKS-GYVKRSVVITDCG 168
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin, isomerase, S
genomics, structural genomics consortium; HET: BMT;
1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Length = 186
Score = 265 bits (679), Expect = 6e-91
Identities = 85/166 (51%), Positives = 105/166 (63%), Gaps = 8/166 (4%)
Query: 39 IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELA-------KRPEGQGYKGSKFHRVI 91
+V+F I IG+ G+I + LF VP T +NF L + + Y GS FHR+I
Sbjct: 21 VVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRII 80
Query: 92 KDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
FMIQGGD+T+GDGTGG SIYG KF DENF +H LSMANAG +TNGSQFFITT
Sbjct: 81 PQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTV 140
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
PWLDG+HVVFGKV+ G ++VK IE + +P + V I G
Sbjct: 141 PCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQN-GKPTKSVCITASG 185
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A
{Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A
1e8k_A 1dyw_A 2igw_A 2hqj_A
Length = 173
Score = 264 bits (677), Expect = 8e-91
Identities = 89/168 (52%), Positives = 113/168 (67%), Gaps = 8/168 (4%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELA-------KRPEGQGYKGSKFHRVIK 92
V+F I IG G+I + L+ VP+T NF L K + +KGSKFHR+I
Sbjct: 6 VFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIP 65
Query: 93 DFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKK 152
+FMIQGGD+T+G+GTGG SIYG+KF DENFK H G G LSMANAG +TNGSQFF+ T K
Sbjct: 66 NFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVK 125
Query: 153 TPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTP 200
T WLDG+HVVFG+V+ G D+VK +ES+ + +PV+ I DCG
Sbjct: 126 TEWLDGKHVVFGRVVEGLDVVKAVESNGSQS-GKPVKDCMIADCGQLK 172
>1z81_A Cyclophilin; structural genomics, structural genomics consortium,
SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP:
b.62.1.1
Length = 229
Score = 266 bits (681), Expect = 1e-90
Identities = 76/167 (45%), Positives = 105/167 (62%), Gaps = 8/167 (4%)
Query: 39 IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELA-----KRPEGQGYKGSKFHRVIKD 93
+V+ I +G +GK + LF VP+T +NF + GYK + FHRVIK+
Sbjct: 61 VVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKE 120
Query: 94 FMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKT 153
FMIQGGD+ +G+G SIYG+KF+DENF + H G LSMAN+G +TNG QFFITTKK
Sbjct: 121 FMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKC 180
Query: 154 PWLDGRHVVFGKVIT--GGDIVKKIESSETDGR-DRPVQGVTIVDCG 197
WLDG++VVFG++I ++KKIE+ +P + +V+CG
Sbjct: 181 EWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECG 227
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 268 bits (687), Expect = 1e-89
Identities = 86/189 (45%), Positives = 113/189 (59%), Gaps = 9/189 (4%)
Query: 26 ANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG---- 81
+ + V+F + IG VG+I + LF VP+T +NF L +G G
Sbjct: 4 PSPQAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTG 63
Query: 82 ----YKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANA 137
+KG FHR+IK FMIQGGD++ +GTGG SIYG+KFEDENF H G LSMANA
Sbjct: 64 KPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANA 123
Query: 138 GKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
G +TNGSQFFITT TP LDG+HVVFG+VI G + K +E+ E G ++P + I +CG
Sbjct: 124 GSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKPAKLCVIAECG 182
Query: 198 HTPVEEPFS 206
+ +
Sbjct: 183 ELKEGDDWG 191
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A
{Mimivirus}
Length = 234
Score = 260 bits (666), Expect = 3e-88
Identities = 49/225 (21%), Positives = 80/225 (35%), Gaps = 30/225 (13%)
Query: 31 AKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELA---------------- 74
V+ I + +G+++I LF P V+NF++L
Sbjct: 8 LPNSGKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYK 67
Query: 75 -KRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFED---ENFKLSHYGSG 130
R + Y+G KFH V+ + I GD +G+ ++Y D+ ++ H G
Sbjct: 68 YNRHINRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKG 127
Query: 131 WLSMA----NAGKDTNGSQFFIT------TKKTPWLDGRHVVFGKVITGGDIVKKIESSE 180
LS+ +G S F IT + LD VV G+V G D++ KI S
Sbjct: 128 LLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMI 187
Query: 181 TDGRDRPVQGVTIVDCGHTPVEEPFSDVVKKIESSETDGRDRPVQ 225
R +I CG + ++P +
Sbjct: 188 KPYAGRKYPTFSIGKCGAYLDSSQAQRKRPVNVNGTKRFLNKPTR 232
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1;
isomerase-immunosuppressant complex, immunosuppressant;
HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB:
1xwn_A
Length = 166
Score = 236 bits (605), Expect = 6e-80
Identities = 79/146 (54%), Positives = 102/146 (69%), Gaps = 5/146 (3%)
Query: 50 NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG 109
++G I + L+ K P+T +NF ELA+R Y G+KFHR+IKDFMIQGGD T G G GG
Sbjct: 19 SMGIIVLELYWKHAPKTCKNFAELARRGY---YNGTKFHRIIKDFMIQGGDPT-GTGRGG 74
Query: 110 ASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVIT 168
ASIYG +FEDE + L G+G L+MANAG DTNGSQFF+T T WLDG+H +FG+V
Sbjct: 75 ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQ 134
Query: 169 GGDIVKKIESSETDGRDRPVQGVTIV 194
G +V ++ ET+ +DRPV V I+
Sbjct: 135 GIGMVNRVGMVETNSQDRPVDDVKII 160
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel,
disorder-order transition, HOOK-like, mRNA processing,
mRNA splicing, rotamase; NMR {Homo sapiens}
Length = 203
Score = 237 bits (607), Expect = 7e-80
Identities = 82/175 (46%), Positives = 106/175 (60%), Gaps = 5/175 (2%)
Query: 50 NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG 109
++G I + L+ K P+T +NF ELA+R Y G+KFHR+IKDFMIQGGD T G G GG
Sbjct: 19 SMGIIVLELYWKHAPKTCKNFAELARRGY---YNGTKFHRIIKDFMIQGGDPT-GTGRGG 74
Query: 110 ASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVIT 168
ASIYG +FEDE + L G+G L+MANAG DTNGSQFF+T T WLDG+H +FG+V
Sbjct: 75 ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQ 134
Query: 169 GGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVVKKIESSETDGRDRP 223
G +V ++ ET+ +DRPV V I+ + DG P
Sbjct: 135 GIGMVNRVGMVETNSQDRPVDDVKIIKAYPSGGGGSGGGSGGGSGGGSGDGGAFP 189
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain,
structura genomics, structural genomics consortium, SGC,
unknown FUNC; 1.80A {Plasmodium falciparum} SCOP:
b.62.1.1
Length = 160
Score = 235 bits (602), Expect = 1e-79
Identities = 75/148 (50%), Positives = 93/148 (62%), Gaps = 5/148 (3%)
Query: 50 NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG 109
+G I I LF K +TVQNF + Y FHRVIK FM+Q GD + GDGTGG
Sbjct: 13 TMGDIHISLFYKECKKTVQNFSVHSING---YYNNCIFHRVIKHFMVQTGDPS-GDGTGG 68
Query: 110 ASIYGDKFEDENFK-LSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVIT 168
SI+G++FEDE F L+H +SMAN G +TNGSQFFITT PWLD +H VFGKV
Sbjct: 69 ESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQ 128
Query: 169 GGDIVKKIESSETDGRDRPVQGVTIVDC 196
G IV IE TD RD+P++ + I++
Sbjct: 129 GSKIVLDIEKVRTDKRDKPLEDIKILNI 156
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans
isomerization, protein-folding, peptidylprolyl ISO
structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Length = 176
Score = 232 bits (593), Expect = 5e-78
Identities = 72/174 (41%), Positives = 100/174 (57%), Gaps = 6/174 (3%)
Query: 25 TANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKG 84
+ E +A I ++G I LF P+TV+NF ++ Y G
Sbjct: 4 SKEEVMAATQAEGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNG---YYNG 60
Query: 85 SKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNG 143
FHR+IK FMIQ GD T G G GG SI+G +FEDE + L H LSMANAG +TNG
Sbjct: 61 HTFHRIIKGFMIQTGDPT-GTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNG 119
Query: 144 SQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGR-DRPVQGVTIVDC 196
SQFFIT TPWLD +H VFG+V G ++V++I + + + + D+P + V+I++
Sbjct: 120 SQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINI 173
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics
consortium, SGC, isomerase; 2.50A {Plasmodium yoelii}
SCOP: b.62.1.1
Length = 196
Score = 223 bits (571), Expect = 2e-74
Identities = 64/148 (43%), Positives = 88/148 (59%), Gaps = 5/148 (3%)
Query: 50 NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG 109
N+G E+ L+ P+T NF L + Y + FHRVI +F+IQGGD T G G GG
Sbjct: 46 NLGDFEVELYWYHSPKTCLNFYTLCEMGF---YDNTIFHRVIPNFVIQGGDPT-GTGKGG 101
Query: 110 ASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVIT 168
SIYG+ FEDE N +L H G+G LSM+N G +TN SQFFIT P LDG+H +F +V
Sbjct: 102 KSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSK 161
Query: 169 GGDIVKKIESSETDGRDRPVQGVTIVDC 196
++ I S +T ++P+ + I+
Sbjct: 162 NMTCIENIASVQTTATNKPIFDLKILRT 189
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;
isomerase-immunosuppressant complex, immunosuppressant,
cyclophilin, structural G structural genomics
consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Length = 201
Score = 219 bits (561), Expect = 9e-73
Identities = 59/179 (32%), Positives = 89/179 (49%), Gaps = 17/179 (9%)
Query: 50 NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGD---- 105
G + I L PR +F+ L + + FHR I++FMIQGG
Sbjct: 14 TQGSLNIELHADMAPRACDSFLRLCAVKY---FDDTIFHRCIRNFMIQGGRAELRQPSKK 70
Query: 106 GTGGASIY-------GDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLD 157
S G FEDE + +L H G G LSMAN GK +N S+FFIT K L+
Sbjct: 71 KEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLN 130
Query: 158 GRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVVKKIESSE 216
+H +FG+V+ G D++++ E ETD +D+P++ + + + PF D K++E +
Sbjct: 131 NKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEEI--IVFKNPFEDARKEMEDEK 187
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum
cyclophilin isomerase, structural genomics; 2.01A
{Cryptosporidium parvum iowa II} PDB: 2qer_A
Length = 185
Score = 216 bits (553), Expect = 8e-72
Identities = 66/174 (37%), Positives = 96/174 (55%), Gaps = 11/174 (6%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGG 99
++FQ N G ++ LF P+ +NF+ L+ YK + FH+ IK F+IQGG
Sbjct: 14 LYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGY---YKNTIFHKNIKGFIIQGG 70
Query: 100 DYTKGDGTGGASIYGDKFEDENF-KLSHYGSGWLSMANAGK----DTNGSQFFITTKKTP 154
D T G G GG SIYG F+DE + +L + G LSMA+ G +TNGSQFFIT P
Sbjct: 71 DPT-GTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLP 129
Query: 155 WLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDV 208
L+G +V+FGK+I G + + +E+ +D +P+ + I D P +D
Sbjct: 130 QLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDI--VIHSNPIADQ 181
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans
isomerization, peptidylprolyl isomerase, protein-
folding, structural genomics consortium; 1.65A {Homo
sapiens} SCOP: b.62.1.1
Length = 197
Score = 213 bits (545), Expect = 2e-70
Identities = 69/171 (40%), Positives = 101/171 (59%), Gaps = 8/171 (4%)
Query: 50 NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG 109
N G + + L P+T +NFI L K+ Y G+ FHR I++F+IQGGD T G GTGG
Sbjct: 27 NKGDLNLELHCDLTPKTCENFIRLCKKHY---YDGTIFHRSIRNFVIQGGDPT-GTGTGG 82
Query: 110 ASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVIT 168
S +G F+DE LSH G G LSMAN+G ++N SQFFIT + +LD +H +FG+V+
Sbjct: 83 ESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVG 142
Query: 169 GGDIVKKIESSETDGR-DRPVQGVTIVDCGHTPVEEPFSDVVKKIESSETD 218
G D++ +E+ E+D + DRP + + I T +P+ + +I
Sbjct: 143 GFDVLTAMENVESDPKTDRPKEEIRIDAT--TVFVDPYEEADAQIAQERKT 191
>2hq6_A Serologically defined colon cancer antigen 10; protein folding,
peptidyl-prolyl CIS-trans isomerase, struct genomics;
1.75A {Homo sapiens}
Length = 185
Score = 212 bits (541), Expect = 6e-70
Identities = 60/160 (37%), Positives = 85/160 (53%), Gaps = 8/160 (5%)
Query: 50 NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG 109
G I+I L+ K P+ +NFI+L Y + FHRV+ F++QGGD T G G+GG
Sbjct: 32 TAGDIDIELWSKEAPKACRNFIQLCLEAY---YDNTIFHRVVPGFIVQGGDPT-GTGSGG 87
Query: 110 ASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVIT 168
SIYG F+DE + +L G ++MANAG NGSQFF T + L+ +H +FGKV
Sbjct: 88 ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTG 147
Query: 169 GG-DIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSD 207
+ ++ + D +RP I C + PF D
Sbjct: 148 DTVYNMLRLSEVDIDDDERPHNPHKIKSC--EVLFNPFDD 185
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix,
disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1
PDB: 1xyh_A 2oju_A*
Length = 161
Score = 210 bits (537), Expect = 1e-69
Identities = 72/159 (45%), Positives = 94/159 (59%), Gaps = 8/159 (5%)
Query: 50 NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG 109
+VG I+I +F + P+T +NF+ L Y G FHR IK FM+Q GD T G G GG
Sbjct: 8 DVGDIKIEVFCERTPKTCENFLALCASN---YYNGCIFHRNIKGFMVQTGDPT-GTGRGG 63
Query: 110 ASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVIT 168
SI+G KFEDE + L H G +SMAN G +TNGSQFFIT K P LD ++ VFGKVI
Sbjct: 64 NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVID 123
Query: 169 GGDIVKKIESSETDGR-DRPVQGVTIVDCGHTPVEEPFS 206
G + + ++E + + RP+ V I D T PF+
Sbjct: 124 GLETLDELEKLPVNEKTYRPLNDVHIKDI--TIHANPFA 160
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural
genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Length = 232
Score = 195 bits (497), Expect = 1e-62
Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 24/185 (12%)
Query: 50 NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG 109
++G +++ L+ + P +NF++L Y + FHRV+KDF++QGGD T G G GG
Sbjct: 29 SLGDLDVELWARECPLACRNFVQLCLEGY---YVNTIFHRVVKDFIVQGGDPT-GTGRGG 84
Query: 110 A--SIYGDKFEDE-NFKLSHYGSGWLSMANAGKD--------------TNGSQFFITTKK 152
A + G F+ E + +L G + +AN G+ TNG+QFFIT +
Sbjct: 85 ADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLAR 144
Query: 153 TPWLDGRHVVFGKVITGG-DIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVVKK 211
L+ + +FGKV + K E DRP+ I + PF D+V +
Sbjct: 145 ADVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTPPFIKSV--DVLWNPFEDLVPR 202
Query: 212 IESSE 216
Sbjct: 203 RLPDA 207
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009,
rotamase, structural proteomics in europe, spine; 2.6A
{Mycobacterium tuberculosis} SCOP: b.62.1.1
Length = 191
Score = 193 bits (491), Expect = 2e-62
Identities = 74/160 (46%), Positives = 90/160 (56%), Gaps = 19/160 (11%)
Query: 50 NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG------------YKGSKFHRVIKDFMIQ 97
N G I+I LFG P+TV NF+ LA+ + Y G+ FHRVI+ FMIQ
Sbjct: 31 NRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQ 90
Query: 98 GGDYTKGDGTGGASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWL 156
GGD T G G GG G KF DE + +L L+MANAG TNGSQFFIT KTP L
Sbjct: 91 GGDPT-GTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHL 146
Query: 157 DGRHVVFGKVIT--GGDIVKKIESSETDGRDRPVQGVTIV 194
+ RH +FG+VI +V+ I + TDG DRP V I
Sbjct: 147 NRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIE 186
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics
center for infectious disease; 1.65A {Burkholderia
pseudomallei} PDB: 3t1u_A*
Length = 167
Score = 144 bits (366), Expect = 1e-43
Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 21/160 (13%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
N G I++ L P+TV+NF+ K +G Y G+ FHRVI FMIQGG +
Sbjct: 9 HTNHGVIKLELDEAKAPKTVENFLNYVK--KGH-YDGTIFHRVINGFMIQGGGFE-PGLK 64
Query: 108 GGASIYGDKFEDE-NFKLSHYGSGWLSMA-NAGKDTNGSQFFITTKKTPWLDGR------ 159
+ +E N L + + ++MA + +QFFI +L+
Sbjct: 65 QKPT--DAPIANEANNGLKND-TYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQG 121
Query: 160 --HVVFGKVITGGDIVKKIESSETDGR----DRPVQGVTI 193
+ VFGKV+ G DIV KI++ +T + D P V I
Sbjct: 122 WGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVI 161
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex;
HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB:
2nul_A 2rs4_A
Length = 164
Score = 142 bits (361), Expect = 4e-43
Identities = 50/158 (31%), Positives = 71/158 (44%), Gaps = 21/158 (13%)
Query: 50 NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG 109
N G I I F P TV+NF++ + EG Y + FHRVI FMIQGG +
Sbjct: 7 NHGDIVIKTFDDKAPETVKNFLDYCR--EGF-YNNTIFHRVINGFMIQGGGFE-PGMKQK 62
Query: 110 ASIYGDKFEDE-NFKLSHYGSGWLSMA-NAGKDTNGSQFFITTKKTPWLDGR-------- 159
A+ + ++E N L + G L+MA + +QFFI +L+
Sbjct: 63 AT--KEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWG 119
Query: 160 HVVFGKVITGGDIVKKIESSETDGR----DRPVQGVTI 193
+ VF +V+ G D V KI+ T D P + V I
Sbjct: 120 YCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVII 157
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex;
HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB:
1j2a_A* 1vai_A* 1clh_A
Length = 166
Score = 140 bits (355), Expect = 4e-42
Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 18/157 (11%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
+ G IE+ L + P +VQNF++ G Y + FHRVI FMIQGG +T
Sbjct: 10 TTSAGNIELELDKQKAPVSVQNFVDYVN--SGF-YNNTTFHRVIPGFMIQGGGFT-EQMQ 65
Query: 108 GGASIYGDKFEDE-NFKLSHYGSGWLSMA-NAGKDTNGSQFFITTKKTPWLDGR-----H 160
++E + L + G ++MA A KD+ SQFFI +LD +
Sbjct: 66 QKKP--NPPIKNEADNGLRN-TRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGY 122
Query: 161 VVFGKVITGGDIVKKIESSETDGR----DRPVQGVTI 193
VFGKV+ G D+ KI T + P + V I
Sbjct: 123 AVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVI 159
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin,
peptidyl prolyl isomerase, ppiase, TLP,; 2.39A
{Arabidopsis thaliana}
Length = 369
Score = 128 bits (324), Expect = 2e-35
Identities = 37/183 (20%), Positives = 57/183 (31%), Gaps = 45/183 (24%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
+ I L G P T NF++L +R Y G + R F++Q GD
Sbjct: 184 NIEDCVFRIVLDGYNAPVTAGNFVDLVERH---FYDGMEIQRSD-GFVVQTGDPEGPAEG 239
Query: 108 G--------------------GASIYGDKFED-----ENFKLSHYGSGWLSMANAGK--D 140
YG E+ + G ++MA D
Sbjct: 240 FIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFEND 299
Query: 141 TNGSQFFITTKK-------TPWLDGRHVVFGKVITGGDIVKKIESSE-------TDGRDR 186
+ SQ F K+ + LDGR+ VFG V D + ++ + G +
Sbjct: 300 SGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLKVGDVIESIQVVSGLEN 359
Query: 187 PVQ 189
Sbjct: 360 LAN 362
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase;
ssgcid, seattle structural genomics center for in
disease; HET: FK5; 1.50A {Burkholderia pseudomallei}
PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A*
1euv_B 3v60_A 3v61_A 3v62_A*
Length = 209
Score = 35.9 bits (83), Expect = 0.007
Identities = 5/55 (9%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 140 DTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIV 194
+ T DG +F K+ ++++ + + + + + +
Sbjct: 11 EVKPEVKPETHINLKVSDGSSEIFFKIKK-TTPLRRLMEAFAKRQGKEMDSLRFL 64
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.36
Identities = 29/223 (13%), Positives = 64/223 (28%), Gaps = 70/223 (31%)
Query: 34 PKVTDIVWFQIQIGEVNVGKIEIGLFGKT-VPRTVQNF--------IELAKRPEGQGYKG 84
+ ++WF + + +V + L + V + + +EL + E +
Sbjct: 389 TILLSLIWFDVI--KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL- 445
Query: 85 SKFHRVI------------KDFMIQGGD-Y---------TKGDGTGGASIYGDKFEDENF 122
HR I D + D Y + +++ F D F
Sbjct: 446 ---HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 123 ---KLSHYGSGWL---SMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKI 176
K+ H + W S+ N + + +I P + R V I+ +
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC-DNDPKYE-RLV--------NAILDFL 552
Query: 177 ESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVVKKIESSETDG 219
+ ++D+++ +E +
Sbjct: 553 PK-----------------IEENLICSKYTDLLRIALMAEDEA 578
>3t24_A Porin; beta-barrel, channel, bacterial outer membrane, membrane
Pro; HET: C8E; 2.40A {Pseudomonas aeruginosa}
Length = 401
Score = 29.4 bits (65), Expect = 1.1
Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 1/78 (1%)
Query: 42 FQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDY 101
+ E++ ++ G K R + ++ G+ + F GG Y
Sbjct: 140 GALNSMEIDGLTLDAGRLKKVNQRDSSDNEDMTITGGGKRQIVVRSGLTSDKFDFAGGSY 199
Query: 102 TKGDGTGGASIYGDKFED 119
D + YG ++
Sbjct: 200 KWTDNLSTSYHYGK-LDN 216
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.4
Identities = 6/41 (14%), Positives = 14/41 (34%), Gaps = 20/41 (48%)
Query: 209 VKKIESSETDGRDRPVQGVTIVDCGYTPVEEP-----FSVE 244
+KK+++S + + Y P ++E
Sbjct: 22 LKKLQAS-----------LKL----YADDSAPALAIKATME 47
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr
protein phosphatase, ppase, manganese, sulfate, viral
protein; 2.15A {Enterobacteria phage lambda} SCOP:
d.159.1.3
Length = 221
Score = 26.7 bits (59), Expect = 7.0
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 182 DGRDRPVQGVTIVDCGHTPVEEP 204
+G + ++G GHTP +P
Sbjct: 170 NGIVKEIKGADTFIFGHTPAVKP 192
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 26.7 bits (58), Expect = 7.6
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 15/62 (24%)
Query: 174 KKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVV-----------KKIESSETDGRDR 222
+I + +G + +V G D V +IE + DG R
Sbjct: 138 DRILRANLNGSNVE----EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 193
Query: 223 PV 224
V
Sbjct: 194 KV 195
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 26.8 bits (60), Expect = 8.1
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 77 PEGQGYKGSKFHRVIKD--FMIQGGDYTKGD 105
PE Y+ S+F+R +K+ F+I G ++ D
Sbjct: 306 PEDPQYRFSEFYRRLKEQGFVIYPGKVSQSD 336
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural
genomics, midwest center for structural genomics; HET:
PGE; 2.49A {Geobacter sulfurreducens}
Length = 114
Score = 25.6 bits (57), Expect = 8.2
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 142 NGSQFFITTKKTPWLDGRHVVFGKVITGGDI 172
+G ++ + PW +G V G VI DI
Sbjct: 83 DGRTQWLRWEVRPWYEGEGRVGGVVIFTEDI 113
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.138 0.411
Gapped
Lambda K H
0.267 0.0502 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,888,510
Number of extensions: 237770
Number of successful extensions: 670
Number of sequences better than 10.0: 1
Number of HSP's gapped: 574
Number of HSP's successfully gapped: 85
Length of query: 249
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 158
Effective length of database: 4,160,982
Effective search space: 657435156
Effective search space used: 657435156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.9 bits)