RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10359
(249 letters)
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 5 [TaxId: 6239]}
Length = 182
Score = 174 bits (441), Expect = 1e-55
Identities = 125/181 (69%), Positives = 146/181 (80%)
Query: 32 KGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVI 91
KGPKVTD V+F ++IG +G+I IGLFGKTVP+T NFIELAK+P+G+GY GSKFHRVI
Sbjct: 1 KGPKVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVI 60
Query: 92 KDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
DFMIQGGD+T+GDGTGG SIYG+KF DENFKL HYG+GWLSMANAG DTNGSQFFITT
Sbjct: 61 ADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTV 120
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVVKK 211
KTPWLDGRHVVFGK++ G D+V+KIE +E DRP Q V I GH V+ PFS +
Sbjct: 121 KTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAVDTPFSVEREA 180
Query: 212 I 212
+
Sbjct: 181 V 181
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus
musculus), variant C [TaxId: 10090]}
Length = 182
Score = 171 bits (434), Expect = 1e-54
Identities = 113/178 (63%), Positives = 133/178 (74%)
Query: 32 KGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVI 91
+GP VTD V+F ++IG+ +VG+I IGLFG VP+TV+NF+ LA +G GYKGS FHRVI
Sbjct: 2 RGPSVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVI 61
Query: 92 KDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
KDFMIQGGD+T DGTGG SIYG+ F DENFKL HYG GW+SMANAG DTNGSQFFIT
Sbjct: 62 KDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLT 121
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVV 209
K WLDG+HVVFGKV+ G +V IE TDG DRP+ TIV+ G V+ PF V
Sbjct: 122 KPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDVKTPFVVEV 179
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6
{Malassezia sympodialis [TaxId: 76777]}
Length = 162
Score = 166 bits (422), Expect = 7e-53
Identities = 89/158 (56%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGG 99
V+F I +G I+ LF VP+T NF L +G GY GS FHRVI DFM+QGG
Sbjct: 4 VFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGG 63
Query: 100 DYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGR 159
D+T G+GTGG SIYG KF DENF+L H G LSMANAG +TNGSQFFITT T WLDG+
Sbjct: 64 DFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGK 123
Query: 160 HVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
HVVFG+VI G ++VK IE +E G +P + I CG
Sbjct: 124 HVVFGEVIDGMNVVKAIE-AEGSGSGKPRSRIEIAKCG 160
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia
malayi) [TaxId: 6279]}
Length = 174
Score = 158 bits (401), Expect = 1e-49
Identities = 84/171 (49%), Positives = 108/171 (63%), Gaps = 8/171 (4%)
Query: 35 KVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG--------YKGSK 86
K V+ + I G+I + L+ PRT NF+ L G G YKGS
Sbjct: 1 KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGST 60
Query: 87 FHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQF 146
FHRVIK+FMIQGGD+TKGDGTGG SIYG F+DE F + H +SMAN G +TNGSQF
Sbjct: 61 FHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQF 120
Query: 147 FITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
FITT P L+ HVVFGKV++G ++V KIE +T+ ++RP+ V I++CG
Sbjct: 121 FITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCG 171
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi
[TaxId: 5693]}
Length = 166
Score = 157 bits (398), Expect = 2e-49
Identities = 100/164 (60%), Positives = 125/164 (76%), Gaps = 1/164 (0%)
Query: 34 PKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKD 93
P VTD V+F I IG+ VG++ IGLFG VP+TV+NF +LA G GYKGS FHRVI++
Sbjct: 2 PVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRN 61
Query: 94 FMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKT 153
FMIQGGD+T DGTGG SIYG +F+DEN K + G +SMANAG ++NGSQFF+TT T
Sbjct: 62 FMIQGGDFTNFDGTGGKSIYGTRFDDENLK-IKHFVGAVSMANAGPNSNGSQFFVTTAPT 120
Query: 154 PWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
PWLDGRHVVFGKV+ G D+VKK+E+++T D+P + V I DCG
Sbjct: 121 PWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCG 164
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 3 [TaxId: 6239]}
Length = 172
Score = 153 bits (386), Expect = 2e-47
Identities = 90/165 (54%), Positives = 113/165 (68%), Gaps = 8/165 (4%)
Query: 40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG-------YKGSKFHRVIK 92
V+F I IG G+I + L+ VP+T NF L G G +KGSKFHR+I
Sbjct: 6 VFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIP 65
Query: 93 DFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKK 152
+FMIQGGD+T+G+GTGG SIYG+KF DENFK H G G LSMANAG +TNGSQFF+ T K
Sbjct: 66 NFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVK 125
Query: 153 TPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
T WLDG+HVVFG+V+ G D+VK +ES+ + +PV+ I DCG
Sbjct: 126 TEWLDGKHVVFGRVVEGLDVVKAVESNGSQ-SGKPVKDCMIADCG 169
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus
fumigatus [TaxId: 5085]}
Length = 171
Score = 151 bits (383), Expect = 7e-47
Identities = 90/163 (55%), Positives = 111/163 (68%), Gaps = 3/163 (1%)
Query: 38 DIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQ 97
D+ + + E VG+I LF K VP+T +NF EL KRP G+GY+ S FHR+I +FMIQ
Sbjct: 7 DVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQ 66
Query: 98 GGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLD 157
GGD+T+G+GTGG SIYGDKF DENF H G LSMANAG +TNGSQFFITT T WLD
Sbjct: 67 GGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLD 126
Query: 158 GRHVVFGKVI--TGGDIVKKIESSETD-GRDRPVQGVTIVDCG 197
G+HVVFG+V +VK+IE+ + G R IV+CG
Sbjct: 127 GKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCG 169
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow
(Bos taurus) [TaxId: 9913]}
Length = 195
Score = 150 bits (380), Expect = 3e-46
Identities = 85/177 (48%), Positives = 110/177 (62%), Gaps = 9/177 (5%)
Query: 39 IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEG--------QGYKGSKFHRV 90
V+F + IG VG+I + LF VP+T +NF L +G +KG FHR+
Sbjct: 16 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRI 75
Query: 91 IKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITT 150
IK FMIQGGD++ +GTGG SIYG+KFEDENF H G LSMANAG +TNGSQFFITT
Sbjct: 76 IKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITT 135
Query: 151 KKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSD 207
TP LDG+HVVFG+VI G + K +E+ E G ++P + I +CG + +
Sbjct: 136 VPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKPAKLCVIAECGELKEGDDWGI 191
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans
isomerase, cyclophilin F {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 149 bits (376), Expect = 5e-46
Identities = 85/159 (53%), Positives = 104/159 (65%), Gaps = 1/159 (0%)
Query: 39 IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQG 98
+V+ + +G++ + L VP+T +NF L +G GYKGS FHRVI FM Q
Sbjct: 4 LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQA 63
Query: 99 GDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDG 158
GD+T +GTGG SIYG +F DENF L H G G LSMANAG +TNGSQFFI T KT WLDG
Sbjct: 64 GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 123
Query: 159 RHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
+HVVFG VI G D+VKKIES + R + + I DCG
Sbjct: 124 KHVVFGHVIEGMDVVKKIESFGSKS-GRTSKKIVITDCG 161
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium
falciparum [TaxId: 5833]}
Length = 170
Score = 148 bits (373), Expect = 2e-45
Identities = 83/173 (47%), Positives = 100/173 (57%), Gaps = 11/173 (6%)
Query: 31 AKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELA------KRPEGQGYKG 84
+K KV +F I I N G+I LF PRT +NF L R + YK
Sbjct: 1 SKRSKV----FFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKN 56
Query: 85 SKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGS 144
S FHR+I FM QGGD T G+G+GG SIYG F DENF + H G LSMANAG +TN S
Sbjct: 57 SIFHRIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSS 116
Query: 145 QFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
QFFIT PWLDG+HVVFGKVI G ++V+++E + V I DCG
Sbjct: 117 QFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKS-GYVKRSVVITDCG 168
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans
isomerase-like 2, Cyclophilin-60, PPI domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 145 bits (367), Expect = 2e-44
Identities = 69/171 (40%), Positives = 100/171 (58%), Gaps = 8/171 (4%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
N G + + L P+T +NFI L K Y G+ FHR I++F+IQGGD T G GT
Sbjct: 6 HTNKGDLNLELHCDLTPKTCENFIRLCK---KHYYDGTIFHRSIRNFVIQGGDPT-GTGT 61
Query: 108 GGASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKV 166
GG S +G F+DE LSH G G LSMAN+G ++N SQFFIT + +LD +H +FG+V
Sbjct: 62 GGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRV 121
Query: 167 ITGGDIVKKIESSETDGR-DRPVQGVTIVDCGHTPVEEPFSDVVKKIESSE 216
+ G D++ +E+ E+D + DRP + + I T +P+ + +I
Sbjct: 122 VGGFDVLTAMENVESDPKTDRPKEEIRIDAT--TVFVDPYEEADAQIAQER 170
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo
sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20
[TaxId: 9606]}
Length = 173
Score = 142 bits (359), Expect = 2e-43
Identities = 89/168 (52%), Positives = 108/168 (64%), Gaps = 5/168 (2%)
Query: 35 KVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELA-----KRPEGQGYKGSKFHR 89
V +V+F + IG VG+++I LF VP+T +NF + K GYKGS FHR
Sbjct: 4 PVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHR 63
Query: 90 VIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFIT 149
VIKDFMIQGGD+ GDGTG ASIY F DENFKL H G LSMAN+G TNG QFFIT
Sbjct: 64 VIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFIT 123
Query: 150 TKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
K WLDG+HVVFGK+I G +++KIE+ T ++P V I CG
Sbjct: 124 CSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCG 171
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl
cis-trans isomerase, cyclophilin F {Human (Homo sapiens)
[TaxId: 9606]}
Length = 161
Score = 140 bits (352), Expect = 2e-42
Identities = 84/159 (52%), Positives = 108/159 (67%), Gaps = 1/159 (0%)
Query: 39 IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQG 98
V+ I+IG G+I++ L VP T +NF L +G G+KGS FHR+I FM QG
Sbjct: 3 QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQG 62
Query: 99 GDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDG 158
GD+T +GTGG SIYG KF+DENF L H G G LSMAN+G +TNGSQFF+T KT WLDG
Sbjct: 63 GDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDG 122
Query: 159 RHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
+HVVFG+V G D++++IE ++ +P Q V I DCG
Sbjct: 123 KHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCG 160
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like
1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 166
Score = 137 bits (345), Expect = 3e-41
Identities = 80/148 (54%), Positives = 103/148 (69%), Gaps = 5/148 (3%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
E ++G I + L+ K P+T +NF ELA+R Y G+KFHR+IKDFMIQGGD T G G
Sbjct: 17 ETSMGIIVLELYWKHAPKTCKNFAELARRGY---YNGTKFHRIIKDFMIQGGDPT-GTGR 72
Query: 108 GGASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKV 166
GGASIYG +FEDE + L G+G L+MANAG DTNGSQFF+T T WLDG+H +FG+V
Sbjct: 73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRV 132
Query: 167 ITGGDIVKKIESSETDGRDRPVQGVTIV 194
G +V ++ ET+ +DRPV V I+
Sbjct: 133 CQGIGMVNRVGMVETNSQDRPVDDVKII 160
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium
yoelii [TaxId: 5861]}
Length = 186
Score = 131 bits (331), Expect = 6e-39
Identities = 75/167 (44%), Positives = 104/167 (62%), Gaps = 8/167 (4%)
Query: 39 IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG-----YKGSKFHRVIKD 93
+V+ I +G +GK + LF VP+T +NF + YK + FHRVIK+
Sbjct: 18 VVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKE 77
Query: 94 FMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKT 153
FMIQGGD+ +G+G SIYG+KF+DENF + H G LSMAN+G +TNG QFFITTKK
Sbjct: 78 FMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKC 137
Query: 154 PWLDGRHVVFGKVITGG--DIVKKIESSETDGR-DRPVQGVTIVDCG 197
WLDG++VVFG++I ++KKIE+ +P + +V+CG
Sbjct: 138 EWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECG 184
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 159
Score = 124 bits (311), Expect = 2e-36
Identities = 60/159 (37%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
+VG I+I +F + P+T +NF+ L G FHR IK FM+Q GD T
Sbjct: 6 HTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCI---FHRNIKGFMVQTGDPTGTGRG 62
Query: 108 GGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVI 167
G + ++ + L H G +SMAN G +TNGSQFFIT K P LD ++ VFGKVI
Sbjct: 63 GNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVI 122
Query: 168 TGGDIVKKIESSETDGR-DRPVQGVTIVDCGHTPVEEPF 205
G + + ++E + + RP+ V I D T PF
Sbjct: 123 DGLETLDELEKLPVNEKTYRPLNDVHIKDI--TIHANPF 159
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 171
Score = 115 bits (289), Expect = 6e-33
Identities = 71/163 (43%), Positives = 88/163 (53%), Gaps = 17/163 (10%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAK------------RPEGQGYKGSKFHRVIKDFM 95
N G I+I LFG P+TV NF+ LA+ P G Y G+ FHRVI+ FM
Sbjct: 9 HTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFM 68
Query: 96 IQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
IQGGD T G G GG ++ + +L L+MANAG TNGSQFFIT KTP
Sbjct: 69 IQGGDPT-GTGRGG--PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPH 125
Query: 156 LDGRHVVFGKVI--TGGDIVKKIESSETDGRDRPVQGVTIVDC 196
L+ RH +FG+VI +V+ I + TDG DRP V I
Sbjct: 126 LNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESI 168
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD
repeat-containing protein 1, PPWD1, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 164
Score = 113 bits (284), Expect = 3e-32
Identities = 65/167 (38%), Positives = 94/167 (56%), Gaps = 8/167 (4%)
Query: 31 AKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRV 90
A+GPK I ++G I LF P+TV+NF ++ Y G FHR+
Sbjct: 2 AEGPKRV----SDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSR---NGYYNGHTFHRI 54
Query: 91 IKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITT 150
IK FMIQ GD T G + G+ ++ + L H LSMANAG +TNGSQFFIT
Sbjct: 55 IKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITV 114
Query: 151 KKTPWLDGRHVVFGKVITGGDIVKKIESSETDGR-DRPVQGVTIVDC 196
TPWLD +H VFG+V G ++V++I + + + + D+P + V+I++
Sbjct: 115 VPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINI 161
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693
{Plasmodium yoelii [TaxId: 5861]}
Length = 169
Score = 111 bits (277), Expect = 4e-31
Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 5/151 (3%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
N+G E+ L+ P+T NF L + G+ + + + G G G
Sbjct: 22 YTNLGDFEVELYWYHSPKTCLNFYTLCEM----GFYDNTIFHRVIPNFVIQGGDPTGTGK 77
Query: 108 GGASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKV 166
GG SIYG+ FEDE N +L H G+G LSM+N G +TN SQFFIT P LDG+H +F +V
Sbjct: 78 GGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARV 137
Query: 167 ITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
++ I S +T ++P+ + I+
Sbjct: 138 SKNMTCIENIASVQTTATNKPIFDLKILRTS 168
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w
{Plasmodium falciparum [TaxId: 5833]}
Length = 155
Score = 108 bits (271), Expect = 2e-30
Identities = 63/150 (42%), Positives = 84/150 (56%), Gaps = 5/150 (3%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
+G I I LF K +TVQNF + GY + + + GDGT
Sbjct: 7 YTTMGDIHISLFYKECKKTVQNFSVHSI----NGYYNNCIFHRVIKHFMVQTGDPSGDGT 62
Query: 108 GGASIYGDKFEDENFKLSHYGSGW-LSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKV 166
GG SI+G++FEDE F ++ + +SMAN G +TNGSQFFITT PWLD +H VFGKV
Sbjct: 63 GGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKV 122
Query: 167 ITGGDIVKKIESSETDGRDRPVQGVTIVDC 196
G IV IE TD RD+P++ + I++
Sbjct: 123 TQGSKIVLDIEKVRTDKRDKPLEDIKILNI 152
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 94.6 bits (234), Expect = 7e-25
Identities = 42/161 (26%), Positives = 59/161 (36%), Gaps = 17/161 (10%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
N G I I F P TV+NF++ + Y + FHRVI FMIQGG + G
Sbjct: 5 HTNHGDIVIKTFDDKAPETVKNFLDYCREGF---YNNTIFHRVINGFMIQGGGFEPGMKQ 61
Query: 108 GGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKK--------TPWLDGR 159
+ + N L + + +QFFI
Sbjct: 62 K--ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWG 119
Query: 160 HVVFGKVITGGDIVKKIESSETD----GRDRPVQGVTIVDC 196
+ VF +V+ G D V KI+ T +D P + V I
Sbjct: 120 YCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESV 160
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 166
Score = 92.7 bits (229), Expect = 4e-24
Identities = 50/163 (30%), Positives = 73/163 (44%), Gaps = 16/163 (9%)
Query: 48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
+ G IE+ L + P +VQNF++ Y + FHRVI FMIQGG +T+
Sbjct: 10 TTSAGNIELELDKQKAPVSVQNFVDY---VNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ 66
Query: 108 GGASIYGDKFEDENFKLSHYGSGWLSMA-NAGKDTNGSQFFITTKKTPWLD-----GRHV 161
+ ++E G ++MA A KD+ SQFFI +LD +
Sbjct: 67 KKPNPP---IKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYA 123
Query: 162 VFGKVITGGDIVKKIESSETDG----RDRPVQGVTIVDCGHTP 200
VFGKV+ G D+ KI T ++ P + V I+ P
Sbjct: 124 VFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator
ST1889 {Sulfolobus tokodaii [TaxId: 111955]}
Length = 109
Score = 27.2 bits (60), Expect = 0.94
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 177 ESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVVKKIESSET 217
+E RP +I + + K++E + T
Sbjct: 69 TKTEGKKIGRPKYYYSISSNILEKIRNDLLNCAKRMELAAT 109
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22
[TaxId: 10754]}
Length = 554
Score = 28.0 bits (62), Expect = 1.1
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 107 TGGASI-YGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGK 165
GG ++ +G K K G G L GK + + F+ + TPW+ +
Sbjct: 41 YGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQ 100
Query: 166 VIT-GGDIVKKIESSETDG 183
+T +V ++ S+TDG
Sbjct: 101 WLTDAAAVVATLKQSKTDG 119
>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 27.3 bits (60), Expect = 1.5
Identities = 13/87 (14%), Positives = 24/87 (27%), Gaps = 6/87 (6%)
Query: 125 SHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGR 184
+ G L + G + + T ++D G++ SE
Sbjct: 148 ARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEV------SEQTIH 201
Query: 185 DRPVQGVTIVDCGHTPVEEPFSDVVKK 211
QG+ GH E + +
Sbjct: 202 SAREQGLHFYAAGHHATERGGIRALSE 228
Score = 25.4 bits (55), Expect = 7.5
Identities = 16/96 (16%), Positives = 22/96 (22%), Gaps = 15/96 (15%)
Query: 159 RHVVFGKVITGGDIVKKIESS-------ETDGRDRPVQGVTIVDCGHTP------VEEPF 205
+ G ++ IE+ D VQ V C
Sbjct: 129 PWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAW--CTGGGQSFIDSAARFG 186
Query: 206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTPVEEPF 241
D E SE QG+ G+ E
Sbjct: 187 VDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGG 222
>d1gpja3 d.58.39.1 (A:1-143) Glutamyl tRNA-reductase catalytic,
N-terminal domain {Archaeon Methanopyrus kandleri
[TaxId: 2320]}
Length = 143
Score = 25.3 bits (55), Expect = 4.7
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 29 KVAKGPKVTDIVWFQI--QIGEVNVGKIEIGLFGKTVPRTVQNFIELAKR 76
+VA G + + +I Q+ + +G + + + I L KR
Sbjct: 87 RVASGLESMMVGEQEILRQVKKAYDRAARLGTLDEALKIVFRRAINLGKR 136
>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase
{Bacteriophage lambda [TaxId: 10710]}
Length = 219
Score = 25.6 bits (55), Expect = 5.1
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 182 DGRDRPVQGVTIVDCGHTPVEEP 204
+G + ++G GHTP +P
Sbjct: 170 NGIVKEIKGADTFIFGHTPAVKP 192
>d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273
{Salmonella typhimurium [TaxId: 90371]}
Length = 278
Score = 25.8 bits (55), Expect = 5.3
Identities = 8/54 (14%), Positives = 17/54 (31%)
Query: 66 TVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFED 119
T + + E A+ GY K + D + + + D+ +
Sbjct: 26 TPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKM 79
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.138 0.411
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 951,514
Number of extensions: 45466
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 52
Length of query: 249
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,268,006
Effective search space: 210488996
Effective search space used: 210488996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.4 bits)