BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1036
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLDVC 229
VN D + TPLH+AAK G E VK LI A + TS + +G+TPLD+
Sbjct: 96 VNAKD-SDGRTPLHYAAKEGHKEIVKLLISKGADVNTS--DSDGRTPLDLA 143
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFK 231
VN D + TPLH+AAK G E VK LI + ++ +G+TPL K
Sbjct: 30 VNASD-SDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSDGRTPLHYAAK 79
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFK 231
VN D + TPLH+AAK G E VK LI + ++ +G+TPL K
Sbjct: 63 VNAKD-SDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSDGRTPLHYAAK 112
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 16/134 (11%)
Query: 108 DNPRYLVSSG-DFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP 166
D R L+++G D +G Y LH++ + + + E+LL+ + + D TP
Sbjct: 16 DEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVNAKD--KDGYTP 71
Query: 167 -------SYIERSDILLDLY--VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSV 217
++E ++LL VN DK TPLH AA+ G +E V+ L+ A +
Sbjct: 72 LHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLL-KAGADVNA 129
Query: 218 RNKEGKTPLDVCFK 231
++K GKTP D+ +
Sbjct: 130 QDKFGKTPFDLAIR 143
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 168 YIERSDILLD--LYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTP 225
+ E S L++ V DK N+ PLH AA GS++ ++ L G K + ++K+G TP
Sbjct: 119 WFEVSQFLIENGASVRIKDK-FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 226 L 226
L
Sbjct: 178 L 178
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 168 YIERSDILLD--LYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTP 225
+ E S L++ V DK N+ PLH AA GS++ ++ L G K + ++K+G TP
Sbjct: 119 WFEVSQFLIENGASVRIKDK-FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 226 L 226
L
Sbjct: 178 L 178
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 168 YIERSDILLD--LYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTP 225
+ E S L++ V DK N+ PLH AA GS++ ++ L G K + ++K+G TP
Sbjct: 119 WFEVSQFLIENGASVRIKDK-FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 226 L 226
L
Sbjct: 178 L 178
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 16/133 (12%)
Query: 108 DNPRYLVSSG-DFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP 166
D R L+++G D +G Y LH++ + + + E+LL+ + + D TP
Sbjct: 16 DEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVNAKD--KDGYTP 71
Query: 167 -------SYIERSDILLDLY--VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSV 217
++E ++LL VN DK TPLH AA+ G +E V+ L+ A +
Sbjct: 72 LHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLL-KAGADVNA 129
Query: 218 RNKEGKTPLDVCF 230
++K GKTP D+
Sbjct: 130 QDKFGKTPFDLAI 142
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 13/108 (12%)
Query: 132 LHVSTKAVNPAMTEMLLEIIGNPAFTNLL-YDSDTP-------SYIERSDILLDLYVNT- 182
LH++ + + + E+LL+ N A N L + TP ++E ++LL +
Sbjct: 51 LHLAARVGHLEIVEVLLK---NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVN 107
Query: 183 PDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCF 230
D + TPLH AA G +E V+ L+ + ++K GKT D+
Sbjct: 108 ADDTIGSTPLHLAADTGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISI 154
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 12/137 (8%)
Query: 108 DNPRYLVSSG-DFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL-----LY 161
D R L+++G D ++G Y LH++ + + E+LL+ + ++L L+
Sbjct: 28 DEVRILMANGADVNATDNDG--YTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLH 85
Query: 162 DSDTPSYIERSDILL--DLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN 219
+ ++E ++LL VN D TPLH AAK+G +E V+ L+ + ++
Sbjct: 86 LAAATGHLEIVEVLLKHGADVNAYDND-GHTPLHLAAKYGHLEIVEVLLKHGA-DVNAQD 143
Query: 220 KEGKTPLDVCFKMPSVD 236
K GKT D+ + D
Sbjct: 144 KFGKTAFDISIDNGNED 160
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 190 TPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLDVC 229
TPLH AA+ G E VK LI A + TS + +G+TPLD+
Sbjct: 105 TPLHHAAENGHKEVVKLLISKGADVNTS--DSDGRTPLDLA 143
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
TPLH AA+ G E VK LI + ++ +G+TPL
Sbjct: 39 TPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPL 74
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
TPLH AA+ G E VK LI + ++ +G+TPL
Sbjct: 72 TPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPL 107
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 35.8 bits (81), Expect = 0.039, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
VN DK TPLH AA+ G +E VK L+ A + ++K G+TPL
Sbjct: 28 VNAKDKN-GRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPL 72
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
TPLH AA+ G +E VK L+ A + ++K G+TPL
Sbjct: 4 TPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPL 39
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCF 230
VN D A+ ETPLH A +G +E V+ L+ + ++K GKT D+
Sbjct: 73 VNAID-AIGETPLHLVAMYGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISI 121
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 35.8 bits (81), Expect = 0.045, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
VN DK TPLH AA+ G +E VK L+ A + ++K G+TPL
Sbjct: 28 VNAKDKN-GRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPL 72
Score = 35.8 bits (81), Expect = 0.045, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
VN DK TPLH AA+ G +E VK L+ A + ++K G+TPL
Sbjct: 61 VNAKDKN-GRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPL 105
Score = 33.5 bits (75), Expect = 0.20, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
TPLH AA+ G +E VK L+ A + ++K G+TPL
Sbjct: 4 TPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPL 39
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
Query: 126 GCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN-----LLYDSDTPSYIERSDILLDLY- 179
G AL V K NP + LL NP + +++D+ +++ LL+
Sbjct: 36 GFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 180 -VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVC 229
VN D N PLH AAK G + V+ L+ RN +G T D+
Sbjct: 95 DVNIEDNEGN-LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
Query: 126 GCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN-----LLYDSDTPSYIERSDILLDLY- 179
G AL V K NP + LL NP + +++D+ +++ LL+
Sbjct: 36 GFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 180 -VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVC 229
VN D N PLH AAK G + V+ L+ RN +G T D+
Sbjct: 95 DVNIEDNEGN-LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
Query: 126 GCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN-----LLYDSDTPSYIERSDILLDLY- 179
G AL V K NP + LL NP + +++D+ +++ LL+
Sbjct: 36 GFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQA 94
Query: 180 -VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVC 229
VN D N PLH AAK G + V+ L+ RN +G T D+
Sbjct: 95 DVNIEDNEGN-LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFK 231
VN DK TPLH AA+ G +E V+ L+ A + ++K+G TPL + +
Sbjct: 40 VNAKDKD-GYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAR 89
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 108 DNPRYLVSSG-DFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP 166
D R L+++G D +G Y LH++ + + + E+LL+ + + D TP
Sbjct: 28 DEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVNAKD--KDGYTP 83
Query: 167 -------SYIERSDILLDLY--VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSV 217
++E ++LL VN DK TPLH AA+ G +E V+ L+ A +
Sbjct: 84 LHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLL-KAGADVNA 141
Query: 218 RNKEGKTPLDVCF 230
++K GKT D+
Sbjct: 142 QDKFGKTAFDISI 154
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 34.7 bits (78), Expect = 0.10, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 219 NKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVF-------DNKEEAL 271
N + K L VC++ D +G +++ P +A K EG+R+ N+EEA+
Sbjct: 29 NSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAV 88
Query: 272 LFIKKNKKIRF 282
+ + F
Sbjct: 89 ALLTSEENKNF 99
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVC 229
TPLH+AA+ G E VK L+ + + +G+TPLD+
Sbjct: 105 TPLHYAAENGHKEIVKLLL-SKGADPNTSDSDGRTPLDLA 143
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
TPLH+AA+ G E VK L+ + ++ +G+TPL
Sbjct: 39 TPLHYAAENGHKEIVKLLL-SKGADPNAKDSDGRTPL 74
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
TPLH+AA+ G E VK L+ + ++ +G+TPL
Sbjct: 72 TPLHYAAENGHKEIVKLLL-SKGADPNAKDSDGRTPL 107
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 125 EGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN--------LLYDSDTPSYIERSDILL 176
EGC N L V A + + E+ I+ + + L+ + + + E + LL
Sbjct: 3 EGCVSN-LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL 61
Query: 177 DLYVNTPDKA-LNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
L V DK +PLH AA G E VK L+G Q + N+ G TPL
Sbjct: 62 QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPL 111
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCF 230
TPLH AAK+G +E V+ L+ + ++K GKT D+
Sbjct: 115 TPLHLAAKWGYLEIVEVLLKHGA-DVNAQDKFGKTAFDISI 154
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 125 EGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN--------LLYDSDTPSYIERSDILL 176
EGC N L V A + + E+ I+ + + L+ + + + E + LL
Sbjct: 2 EGCVSN-LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL 60
Query: 177 DLYVNTPDKA-LNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
L V DK +PLH AA G E VK L+G Q + N+ G TPL
Sbjct: 61 QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPL 110
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 189 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCF 230
TPLH AA FG +E V+ L+ + ++K GKT D+
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKNGA-DVNAQDKFGKTAFDISI 154
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
Query: 126 GCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN-----LLYDSDTPSYIERSDILLD--L 178
G AL V K NP + LL NP + +++D+ +++ LL+
Sbjct: 36 GFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQA 94
Query: 179 YVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVC 229
VN D N PLH AAK G + V+ L+ RN +G T D+
Sbjct: 95 DVNIEDNEGN-LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 126 GCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN-----LLYDSDTPSYIERSDILLDLY- 179
G AL V K NP + LL NP + +++D+ ++ LL+
Sbjct: 36 GFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQA 94
Query: 180 -VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVC 229
VN D N PLH AAK G + V+ L+ RN +G T D+
Sbjct: 95 DVNIEDNEGN-LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 33.1 bits (74), Expect = 0.26, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTK 249
TPLH AAK G E VK+L+ + R+K+G TPL + K + + L K
Sbjct: 11 TPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 250 VATKSEGTEE 259
+K T E
Sbjct: 70 ARSKDGNTPE 79
Score = 32.0 bits (71), Expect = 0.69, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTP 225
VN K N TPLH AAK G E VK L+ + R+K+G TP
Sbjct: 35 VNARSKDGN-TPLHLAAKNGHAEIVKLLLA-KGADVNARSKDGNTP 78
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVD 236
TPLH AA FG +E V+ L+ + ++K GKT D+ + D
Sbjct: 82 TPLHLAALFGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISIDNGNED 127
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVC 229
VN D L TPLH AA FG +E V+ L+ + ++ G TPL +
Sbjct: 73 VNAYD-TLGSTPLHLAAHFGHLEIVEVLLKNGA-DVNAKDDNGITPLHLA 120
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVC 229
TPLH AA+ G E VK L+ + + +G+TPLD+
Sbjct: 105 TPLHLAAENGHKEVVKLLL-SQGADPNTSDSDGRTPLDLA 143
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVC 229
TPLH AA+ G E VK L+ + ++ +GKTPL +
Sbjct: 39 TPLHLAAENGHKEVVKLLL-SQGADPNAKDSDGKTPLHLA 77
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVC 229
TPLH AA+ G E VK L+ + ++ +GKTPL +
Sbjct: 72 TPLHLAAENGHKEVVKLLL-SQGADPNAKDSDGKTPLHLA 110
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 108 DNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGN------PAFTNLLY 161
D R L+++G H+ LH++ +P + E+LL+ + +T L
Sbjct: 28 DEVRILMANG-ADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHL 86
Query: 162 DSDTPSYIERSDILLDLY--VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN 219
+D ++E ++LL VN D A TPLH AA G +E V+ L+ + ++
Sbjct: 87 AADN-GHLEIVEVLLKYGADVNAQD-AYGLTPLHLAADRGHLEIVEVLLKHGA-DVNAQD 143
Query: 220 KEGKTPLDVCF 230
K GKT D+
Sbjct: 144 KFGKTAFDISI 154
>pdb|3AYX|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An H2-Reduced Condition
pdb|3AYX|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An H2-Reduced Condition
pdb|3AYY|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
Condition
pdb|3AYY|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
Condition
pdb|3AYZ|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An Air-Oxidized Condition
pdb|3AYZ|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An Air-Oxidized Condition
Length = 596
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 312 SPSTVTAADPSALPQVSSLAAAEKP--SP--FKSLKSQELVKLRKLIEKGNLADVRKLVW 367
+P ADP A ++ L + P SP FK ++ ++++K ++ G L + W
Sbjct: 133 NPVNALKADPQATSELQKLVSPHHPMSSPGYFKDIQ----IRIQKFVDSGQLGIFKNGYW 188
Query: 368 DNPRYLVS-SGDFPTILHVV 386
NP Y +S D + H +
Sbjct: 189 SNPAYKLSPEADLMAVTHYL 208
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 52 SPSTVTAADPSALPQVSSLAAAEKP--SP--FKSLKSQELVKLRKLIEKGNLADVRKLVW 107
+P ADP A ++ L + P SP FK ++ ++++K ++ G L + W
Sbjct: 133 NPVNALKADPQATSELQKLVSPHHPMSSPGYFKDIQ----IRIQKFVDSGQLGIFKNGYW 188
Query: 108 DNPRYLVS-SGDFPTILH 124
NP Y +S D + H
Sbjct: 189 SNPAYKLSPEADLMAVTH 206
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 168 YIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 227
Y+ ++ L+D P A T LH AAK G E V+ L+ ++ + ++ G TP+
Sbjct: 62 YLIKAGALVD-----PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMI 116
Query: 228 VCFKMPSVDSMGPLSTKLTPTKVATKSE 255
+ VD + L +K + + E
Sbjct: 117 WATEYKHVDLVKLLLSKGSDINIRDNEE 144
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 189 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
++PLH AA+ +CV + +++NKEG+TPL
Sbjct: 178 DSPLHIAARENRYDCVVLFLS-RDSDVTLKNKEGETPL 214
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 189 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMG 239
ET LH AA++ + KRL+ A ++++ G+TPL S D+ G
Sbjct: 26 ETALHLAARYSRSDAAKRLL-EASADANIQDNMGRTPLHAAV---SADAQG 72
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVC 229
VN D A TPLH AAK G +E V+ L+ + R+ G+TPL +
Sbjct: 40 VNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHGA-DVNARDIWGRTPLHLA 87
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 181 NTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMG 239
N D+ ET LH AA++ + KRL+ A +++ G+TPL S D+ G
Sbjct: 16 NQTDRT-GETALHLAARYSRSDAAKRLL-EASADAXIQDNMGRTPLHAAV---SADAQG 69
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 167 SYIERSDILLDLYVNTPDKAL-NETPLHFAAKFGSVECVKRLI 208
Y E S LL+ N D+ L ETPL A+K+G E VK+L+
Sbjct: 112 GYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLL 154
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 189 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMG 239
ET LH AA++ + KRL+ A ++++ G+TPL S D+ G
Sbjct: 59 ETALHLAARYSRSDAAKRLL-EASADANIQDNMGRTPLHAAV---SADAQG 105
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 189 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMG 239
ET LH AA++ + KRL+ A ++++ G+TPL S D+ G
Sbjct: 58 ETALHLAARYSRSDAAKRLL-EASADANIQDNMGRTPLHAAV---SADAQG 104
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI 208
VN DK + +TPLH AA +G +E V+ L+
Sbjct: 73 VNAADK-MGDTPLHLAALYGHLEIVEVLL 100
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 31.6 bits (70), Expect = 0.73, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
TPLH AA+ G +E VK L+ A + ++K GKT D+
Sbjct: 41 TPLHLAARNGHLEVVKLLLE-AGADVNAQDKFGKTAFDI 78
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 189 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKM 232
ETPLH AA+ G E K L+ K + + + K+ +TPL ++
Sbjct: 48 ETPLHMAARAGHTEVAKYLL-QNKAKVNAKAKDDQTPLHCAARI 90
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 132 LHVSTKAVNPAMTEMLLEI-----IGNPAFTNLLYDSDTPSYIERSDILL--DLYVNTPD 184
LH++ + + M +LL +GN + L+ ++ +D+L+ + V+
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT 308
Query: 185 KALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVD 236
+ + TPLH A+ +G+++ VK L+ + + + K G +PL + D
Sbjct: 309 R-MGYTPLHVASHYGNIKLVKFLL-QHQADVNAKTKLGYSPLHQAAQQGHTD 358
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 160 LYDSDTPSYIERSDILL--DLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSV 217
LY + ++E ++LL VN D A+ TPLH AA G +E + L+ +
Sbjct: 51 LYLATAHGHLEIVEVLLKNGADVNAVD-AIGFTPLHLAAFIGHLEIAEVLLKHGA-DVNA 108
Query: 218 RNKEGKTPLDVCF 230
++K GKT D+
Sbjct: 109 QDKFGKTAFDISI 121
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCF 230
VN D +TPLH AA G +E V+ L+ + ++K GKT D+
Sbjct: 106 VNAVDT-WGDTPLHLAAIMGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISI 154
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVD 236
TPLH AA G +E V+ L+ + ++K GKT D+ + D
Sbjct: 115 TPLHLAANIGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISIDNGNED 160
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCF 230
VN D +TPLH AA G +E V+ L+ + ++K GKT D+
Sbjct: 106 VNAVDT-WGDTPLHLAAIMGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISI 154
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 150 IIGNPAFTNLLYDSD-TP-------SYIERSDILL--DLYVNTPDKALNETPLHFAAKFG 199
++ N A N + D+ TP ++E ++LL VN D + TPLH AA G
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD-SWGRTPLHLAATVG 91
Query: 200 SVECVKRLIGCAKIQTSVRNKEGKTPLDVCF 230
+E V+ L+ + ++K GKT D+
Sbjct: 92 HLEIVEVLLEYGA-DVNAQDKFGKTAFDISI 121
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 31.6 bits (70), Expect = 0.86, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
TPLH AA+ G +E VK L+ A ++K GKT D+
Sbjct: 59 TPLHLAARNGHLEVVKLLLE-AGADVXAQDKFGKTAFDI 96
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVD 236
TPLH AAK G +E V+ L+ + ++K GKT D+ + D
Sbjct: 115 TPLHLAAKRGHLEIVEVLLKNGA-DVNAQDKFGKTAFDISIDNGNED 160
>pdb|3IZ3|B Chain B, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3IZ3|C Chain C, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3J17|B Chain B, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
pdb|3J17|C Chain C, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
Length = 1333
Score = 31.6 bits (70), Expect = 0.91, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 211 AKIQT--SVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSE 255
AKI T S R + + P DV F + +VD +G + K PT V ++++
Sbjct: 73 AKIATASSARQTDVEKPADVTFTIENVDDVGIMQQKKPPTVVQSRTD 119
>pdb|3CNF|A Chain A, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
By Cryo-Electron Microscopy
pdb|3CNF|B Chain B, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
By Cryo-Electron Microscopy
pdb|3IZX|B Chain B, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
pdb|3IZX|C Chain C, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
Length = 1333
Score = 31.2 bits (69), Expect = 0.93, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 211 AKIQT--SVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSE 255
AKI T S R + + P DV F + +VD +G + K PT V ++++
Sbjct: 73 AKIATASSARQADVEKPADVTFTIENVDDVGIMQQKKPPTVVQSRTD 119
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
VN DK TPLH AA+ G +E V+ L+ A + ++K GKT D+
Sbjct: 28 VNAKDKD-GYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTAFDI 74
>pdb|1TB6|I Chain I, 2.5a Crystal Structure Of The
Antithrombin-Thrombin-Heparin Ternary Complex
pdb|1T1F|A Chain A, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|1T1F|B Chain B, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|1T1F|C Chain C, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|2BEH|I Chain I, Crystal Structure Of Antithrombin Variant
S137a/v317c/t401c With Plasma Latent Antithrombin
pdb|2B5T|I Chain I, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
Length = 432
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 224 TPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEE 259
+P+D+C P M P+ +P K AT+ EG+E+
Sbjct: 3 SPVDICTAKPRDIPMNPMCIYRSPEKKATEDEGSEQ 38
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 187 LNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLT 246
L +TPLH A E + L+G A +R+ G TPL + + + S+G L+ T
Sbjct: 44 LQQTPLHLAVITNQPEIAEALLG-AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCT 102
>pdb|3KCG|I Chain I, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 432
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 224 TPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEE 259
+P+D+C P M P+ +P K AT+ EG+E+
Sbjct: 3 SPVDICTAKPRDIPMNPMCIYRSPEKKATEDEGSEQ 38
>pdb|2HIJ|I Chain I, Crystal Structure Of P14 Alanine Variant Of Antithrombin
Length = 432
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 224 TPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEE 259
+P+D+C P M P+ +P K AT+ EG+E+
Sbjct: 3 SPVDICTAKPRDIPMNPMCIYRSPEKKATEDEGSEQ 38
>pdb|1DZG|I Chain I, N135q-S380c-Antithrombin-Iii
Length = 432
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 224 TPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEE 259
+P+D+C P M P+ +P K AT+ EG+E+
Sbjct: 3 SPVDICTAKPRDIPMNPMCIYRSPEKKATEDEGSEQ 38
>pdb|1ATH|A Chain A, The Intact And Cleaved Human Antithrombin Iii Complex As A
Model For Serpin-Proteinase Interactions
pdb|1ANT|L Chain L, Biological Implications Of A 3 Angstroms Structure Of
Dimeric Antithrombin
pdb|1ANT|I Chain I, Biological Implications Of A 3 Angstroms Structure Of
Dimeric Antithrombin
pdb|2ANT|L Chain L, The 2.6 A Structure Of Antithrombin Indicates A
Conformational Change At The Heparin Binding Site
pdb|2ANT|I Chain I, The 2.6 A Structure Of Antithrombin Indicates A
Conformational Change At The Heparin Binding Site
pdb|1AZX|I Chain I, AntithrombinPENTASACCHARIDE COMPLEX
pdb|1AZX|L Chain L, AntithrombinPENTASACCHARIDE COMPLEX
pdb|1BR8|L Chain L, Implications For Function And Therapy Of A 2.9a Structure
Of Binary-Complexed Antithrombin
pdb|1BR8|I Chain I, Implications For Function And Therapy Of A 2.9a Structure
Of Binary-Complexed Antithrombin
pdb|1E03|L Chain L, Plasma Alpha Antithrombin-Iii And Pentasaccharide
pdb|1E03|I Chain I, Plasma Alpha Antithrombin-Iii And Pentasaccharide
pdb|1E04|L Chain L, Plasma Beta Antithrombin-Iii
pdb|1E04|I Chain I, Plasma Beta Antithrombin-Iii
pdb|1E05|L Chain L, Plasma Alpha Antithrombin-Iii
pdb|1E05|I Chain I, Plasma Alpha Antithrombin-Iii
pdb|1DZG|L Chain L, N135q-S380c-Antithrombin-Iii
pdb|1DZH|L Chain L, P14-Fluorescein-N135q-S380c-Antithrombin-Iii
pdb|1JVQ|L Chain L, Crystal Structure At 2.6a Of The Ternary Complex Between
Antithrombin, A P14-P8 Reactive Loop Peptide, And An
Exogenous Tetrapeptide
pdb|1JVQ|I Chain I, Crystal Structure At 2.6a Of The Ternary Complex Between
Antithrombin, A P14-P8 Reactive Loop Peptide, And An
Exogenous Tetrapeptide
pdb|1LK6|L Chain L, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
pdb|1LK6|I Chain I, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
pdb|1NQ9|I Chain I, Crystal Structure Of Antithrombin In The
Pentasaccharide-Bound Intermediate State
pdb|1NQ9|L Chain L, Crystal Structure Of Antithrombin In The
Pentasaccharide-Bound Intermediate State
pdb|1OYH|L Chain L, Crystal Structure Of P13 Alanine Variant Of Antithrombin
pdb|1SR5|A Chain A, Antithrombin-Anhydrothrombin-Heparin Ternary Complex
Structure
pdb|1R1L|L Chain L, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
(Formyl-Norleucine-Lf)
pdb|1R1L|I Chain I, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
(Formyl-Norleucine-Lf)
pdb|2BEH|L Chain L, Crystal Structure Of Antithrombin Variant
S137a/v317c/t401c With Plasma Latent Antithrombin
pdb|2HIJ|L Chain L, Crystal Structure Of P14 Alanine Variant Of Antithrombin
pdb|1ATH|B Chain B, The Intact And Cleaved Human Antithrombin Iii Complex As A
Model For Serpin-Proteinase Interactions
pdb|2ZNH|A Chain A, Crystal Structure Of A Domain-Swapped Serpin Dimer
pdb|2ZNH|B Chain B, Crystal Structure Of A Domain-Swapped Serpin Dimer
pdb|3EVJ|I Chain I, Intermediate Structure Of Antithrombin Bound To The
Natural Pentasaccharide
pdb|3EVJ|L Chain L, Intermediate Structure Of Antithrombin Bound To The
Natural Pentasaccharide
pdb|4EB1|L Chain L, Hyperstable In-Frame Insertion Variant Of Antithrombin
Length = 432
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 224 TPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEE 259
+P+D+C P M P+ +P K AT+ EG+E+
Sbjct: 3 SPVDICTAKPRDIPMNPMCIYRSPEKKATEDEGSEQ 38
>pdb|1OYH|I Chain I, Crystal Structure Of P13 Alanine Variant Of Antithrombin
Length = 432
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 224 TPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEE 259
+P+D+C P M P+ +P K AT+ EG+E+
Sbjct: 3 SPVDICTAKPRDIPMNPMCIYRSPEKKATEDEGSEQ 38
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
+N PD PLH AA G ++ + LI +V N EG TPLD+
Sbjct: 99 INQPDNE-GWIPLHAAASCGYLDIAEYLISQGAHVGAV-NSEGDTPLDI 145
>pdb|1DZH|I Chain I, P14-Fluorescein-N135q-S380c-Antithrombin-Iii
Length = 432
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 224 TPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEE 259
+P+D+C P M P+ +P K AT+ EG+E+
Sbjct: 3 SPVDICTAKPRDIPMNPMCIYRSPEKKATEDEGSEQ 38
>pdb|2GD4|I Chain I, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|C Chain C, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 443
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 224 TPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEE 259
+P+D+C P M P+ +P K AT+ EG+E+
Sbjct: 14 SPVDICTAKPRDIPMNPMCIYRSPEKKATEDEGSEQ 49
>pdb|4EB1|I Chain I, Hyperstable In-Frame Insertion Variant Of Antithrombin
Length = 440
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 224 TPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEE 259
+P+D+C P M P+ +P K AT+ EG+E+
Sbjct: 3 SPVDICTAKPRDIPMNPMCIYRSPEKKATEDEGSEQ 38
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 62/158 (39%), Gaps = 55/158 (34%)
Query: 78 PFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTI--------LHEGCRY 129
PF + + + L+ + + KG++ V YL+ +G P + LHE C +
Sbjct: 4 PFTNHRGETLLHIASI--KGDIPSVE--------YLLQNGSDPNVKDHAGWTPLHEACNH 53
Query: 130 NALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNE 189
L V E+LL+ + A N T Y N+
Sbjct: 54 GHLKV---------VELLLQ---HKALVN------TTGY------------------QND 77
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 227
+PLH AAK G V+ VK L+ + +V N G P+D
Sbjct: 78 SPLHDAAKNGHVDIVKLLLSYGASRNAV-NIFGLRPVD 114
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 187 LNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLT 246
L +TPLH A E + L+G A +R+ G TPL + + + S+G L+ T
Sbjct: 41 LQQTPLHLAVITNQPEIAEALLG-AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCT 99
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
T LH+ + EC+K L+ K + N+ G+TPLD+
Sbjct: 207 TALHYCCLTDNAECLKLLLR-GKASIEIANESGETPLDI 244
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 184 DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVD 236
+K T LH+AA+ + VK L+G ++++GKTP+ + + ++
Sbjct: 275 EKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIE 327
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 188 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD-VCF 230
++TPLH AA G + V++L+ K + N+ G PL CF
Sbjct: 67 DDTPLHLAASHGHRDIVQKLLQ-YKADINAVNEHGNVPLHYACF 109
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 188 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD-VCF 230
++TPLH AA G + V++L+ K + N+ G PL CF
Sbjct: 72 DDTPLHLAASHGHRDIVQKLLQ-YKADINAVNEHGNVPLHYACF 114
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 188 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLST 243
N +H AA+ G + V+RLI + +++N+ G T L + K VD+ L++
Sbjct: 20 NXEKIHVAARKGQTDEVRRLIETG-VSPTIQNRFGCTALHLACKFGCVDTAKYLAS 74
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
TPLH AA G E K L+ T +N++G TPLD+
Sbjct: 110 TPLHEAAAKGKYEICKLLLQHGADPTK-KNRDGNTPLDL 147
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
TPLH AA G E K L+ T +N++G TPLD+
Sbjct: 114 TPLHEAAAKGKYEICKLLLQHGADPTK-KNRDGNTPLDL 151
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
TPLH AA G E K L+ T +N++G TPLD+
Sbjct: 112 TPLHEAAAKGKYEICKLLLQHGADPTK-KNRDGNTPLDL 149
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFK 231
T LH+AA + +C+K L+ + +V N+ G+T LD+ K
Sbjct: 209 TALHYAALYNQPDCLKLLLKGRALVGTV-NEAGETALDIARK 249
>pdb|1QH3|A Chain A, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH3|B Chain B, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH5|A Chain A, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
pdb|1QH5|B Chain B, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
Length = 260
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 88 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYN 130
+K + +E GN A KL W +Y + P+ L E YN
Sbjct: 180 LKFARHVEPGNAAIREKLAWAKEKYSIGEPTVPSTLAEEFTYN 222
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFK 231
T LH+AA + +C+K L+ + +V N+ G+T LD+ K
Sbjct: 228 TALHYAALYNQPDCLKLLLKGRALVGTV-NEAGETALDIARK 268
>pdb|4AX1|B Chain B, Q157n Mutant. Crystal Structure Of The Mobile
Metallo-Beta- Lactamase Aim-1 From Pseudomonas
Aeruginosa: Insights Into Antibiotic Binding And The
Role Of Gln157
Length = 303
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 33 NFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQV 67
N Y G+CG++ L+ + A V AA P A PQ+
Sbjct: 49 NTWYVGTCGISALLVTSDAGHILVDAATPQAGPQI 83
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 293 NFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQV 327
N Y G+CG++ L+ + A V AA P A PQ+
Sbjct: 49 NTWYVGTCGISALLVTSDAGHILVDAATPQAGPQI 83
>pdb|4AWY|B Chain B, Crystal Structure Of The Mobile Metallo-Beta-Lactamase
Aim-1 From Pseudomonas Aeruginosa: Insights Into
Antibiotic Binding And The Role Of Gln157
pdb|4AWZ|A Chain A, Aim-1-3mol. Crystal Structure Of The Mobile
Metallo-Beta-Lactamase Aim-1 From Pseudomonas
Aeruginosa: Insights Into Antibiotic Binding And The
Role Of Gln157
pdb|4AWZ|B Chain B, Aim-1-3mol. Crystal Structure Of The Mobile
Metallo-Beta-Lactamase Aim-1 From Pseudomonas
Aeruginosa: Insights Into Antibiotic Binding And The
Role Of Gln157
pdb|4AWZ|C Chain C, Aim-1-3mol. Crystal Structure Of The Mobile
Metallo-Beta-Lactamase Aim-1 From Pseudomonas
Aeruginosa: Insights Into Antibiotic Binding And The
Role Of Gln157
Length = 303
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 33 NFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQV 67
N Y G+CG++ L+ + A V AA P A PQ+
Sbjct: 49 NTWYVGTCGISALLVTSDAGHILVDAATPQAGPQI 83
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 293 NFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQV 327
N Y G+CG++ L+ + A V AA P A PQ+
Sbjct: 49 NTWYVGTCGISALLVTSDAGHILVDAATPQAGPQI 83
>pdb|4AX0|B Chain B, Q157a Mutant. Crystal Structure Of The Mobile
Metallo-Beta-Lactamase Aim-1 From Pseudomonas
Aeruginosa: Insights Into Antibiotic Binding And The
Role Of Gln157
Length = 303
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 33 NFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQV 67
N Y G+CG++ L+ + A V AA P A PQ+
Sbjct: 49 NTWYVGTCGISALLVTSDAGHILVDAATPQAGPQI 83
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 293 NFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQV 327
N Y G+CG++ L+ + A V AA P A PQ+
Sbjct: 49 NTWYVGTCGISALLVTSDAGHILVDAATPQAGPQI 83
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTK 249
T +H AA G+++ V L+ K T++++ EG TPL + V+ L T+
Sbjct: 141 TAMHRAAAKGNLKMVHILL-FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY 199
Query: 250 VATKSEGT 257
+ K E T
Sbjct: 200 IENKEEKT 207
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTK 249
T +H AA G+++ V L+ K T++++ EG TPL + V+ L T+
Sbjct: 141 TAMHRAAAKGNLKMVHILL-FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY 199
Query: 250 VATKSEGT 257
+ K E T
Sbjct: 200 IENKEEKT 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,425,437
Number of Sequences: 62578
Number of extensions: 451092
Number of successful extensions: 1407
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 1314
Number of HSP's gapped (non-prelim): 153
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)