RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1036
(399 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 56.2 bits (136), Expect = 6e-10
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 129 YNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP-------SYIERSDILLDL--Y 179
LH++ + + ++LLE + + D TP ++E +LL+
Sbjct: 8 RTPLHLAASNGHLEVVKLLLENGADVNAKD--NDGRTPLHLAAKNGHLEIVKLLLEKGAD 65
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVC 229
VN DK TPLH AA+ G+++ VK L+ + R+K+G+TPL +
Sbjct: 66 VNARDK-DGNTPLHLAARNGNLDVVKLLL-KHGADVNARDKDGRTPLHLA 113
Score = 44.3 bits (105), Expect = 9e-06
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 23/125 (18%)
Query: 94 IEKGNLADVRKLVWDNPRYLVSSGDFPTIL-HEGCRYNALHVSTKAVNPAMTEMLLEIIG 152
G+L V+ L+ +G ++G LH++ K + + ++LLE
Sbjct: 15 ASNGHLEVVK--------LLLENGADVNAKDNDG--RTPLHLAAKNGHLEIVKLLLEKGA 64
Query: 153 NPAFTNLLYDSDTP-------SYIERSDILLDLY--VNTPDKALNETPLHFAAKFGSVEC 203
+ + D +TP ++ +LL VN DK TPLH AAK G +E
Sbjct: 65 DVNARD--KDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKD-GRTPLHLAAKNGHLEV 121
Query: 204 VKRLI 208
VK L+
Sbjct: 122 VKLLL 126
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 42.0 bits (99), Expect = 1e-05
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 227
+N D N TPLH AAK+G++E V+ L+ + ++R+ +G T LD
Sbjct: 9 LNATDGNGN-TPLHLAAKYGALELVQWLLK-PGVDLNLRDSDGLTALD 54
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 42.2 bits (100), Expect = 2e-05
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 188 NETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLDVC 229
+T LH AA+ G++E VK L+ A + ++K+G T L +
Sbjct: 28 TDTALHLAARNGNLEIVKLLLEHGADVNA--KDKDGNTALHLA 68
Score = 39.2 bits (92), Expect = 3e-04
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 36/104 (34%)
Query: 114 VSSGDFPTI---LHEGCRYN------ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSD 164
+G+ + L +G N ALH++ + N + ++LLE + +D
Sbjct: 5 AKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLE-----------HGAD 53
Query: 165 TPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLI 208
VN DK T LH AA+ G++E VK L+
Sbjct: 54 ---------------VNAKDK-DGNTALHLAARNGNLEIVKLLL 81
Score = 30.3 bits (69), Expect = 0.39
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 192 LHFAAKFGSVECVKRLI 208
LH AAK G++E VK L+
Sbjct: 1 LHLAAKNGNLELVKLLL 17
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 38.0 bits (89), Expect = 3e-04
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVD 236
T LH AA G +E VK L+ + + +++G T L + + +++
Sbjct: 3 TALHKAAISGRLELVKYLL-EKGVDINRTDEDGNTALHIAAENGNLE 48
Score = 34.5 bits (80), Expect = 0.005
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI 208
+N D+ T LH AA+ G++E +K L+
Sbjct: 27 INRTDED-GNTALHIAAENGNLEVLKLLL 54
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 189 ETPLHFAAKFGSVECVKRLI 208
TPLH AA+ G +E VK L+
Sbjct: 3 NTPLHLAARNGHLEVVKLLL 22
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 36.9 bits (85), Expect = 0.018
Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 27/159 (16%)
Query: 84 SQELVKLRKLIEKGNLADVRKLVWDNP-RYLVSSGDFPTILHEGCRY---NALHVSTKAV 139
+++KL L+EKG A+V+ ++P GD+ I + + H+ K
Sbjct: 169 FFDIIKL--LLEKGAYANVKDNNGESPLHNAAEYGDYACI-----KLLIDHGNHIMNKC- 220
Query: 140 NPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFG 199
T + II N + LL ++ + I DI D TPLH A
Sbjct: 221 KNGFTPLHNAIIHNRSAIELLINNAS---INDQDI--DGS----------TPLHHAINPP 265
Query: 200 SVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSM 238
+ ++ K S+++ +G+ P+D FK + D +
Sbjct: 266 CDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPV 304
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 36.6 bits (85), Expect = 0.019
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 129 YNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYV--NTPDKA 186
N LH+ + N ++L +I N R + LL V N D
Sbjct: 142 ENLLHLYLE-SNKIDLKILKLLIDKGVDINA---------KNRVNYLLSYGVPINIKDV- 190
Query: 187 LNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFK 231
TPLH+A + E VK L+ ++ NK G TPL +
Sbjct: 191 YGFTPLHYAVYNNNPEFVKYLLDLG-ANPNLVNKYGDTPLHIAIL 234
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 32.2 bits (74), Expect = 0.026
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 188 NETPLHFAAKFGSVECVKRLI 208
TPLH AA+ G++E VK L+
Sbjct: 2 GRTPLHLAAENGNLEVVKLLL 22
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 35.4 bits (81), Expect = 0.044
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Query: 147 LLEIIGNPAFTNLLYDSDTPSYIE---RSDILLDLY--------VNTPDKALNETPLHFA 195
LL+I NP F +YD +P + R + L V PD E+ LH A
Sbjct: 21 LLDIGINPNFE--IYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDI---ESELHDA 75
Query: 196 AKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPL 241
+ G V+ V+ L+ K V K+G TPL + + +D M L
Sbjct: 76 VEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLL 121
Score = 30.7 bits (69), Expect = 1.3
Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 11/134 (8%)
Query: 111 RYLVSSGDFPTI-LHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYI 169
R L+ G P +++G + + ++ K + ++L++ P +S+ +
Sbjct: 19 RRLLDIGINPNFEIYDG--ISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAV 76
Query: 170 ERSDI-----LLDL--YVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEG 222
E D+ LLDL + + TPLH A ++ +K LI + N +
Sbjct: 77 EEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIA-RGADPDIPNTDK 135
Query: 223 KTPLDVCFKMPSVD 236
+PL + M +
Sbjct: 136 FSPLHLAVMMGDIK 149
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 31.1 bits (71), Expect = 0.048
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 188 NETPLHFAAKFGSVECVKRLI 208
TPLH AA+ G++E VK L+
Sbjct: 2 GNTPLHLAARNGNLELVKLLL 22
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 34.0 bits (77), Expect = 0.082
Identities = 29/119 (24%), Positives = 43/119 (36%), Gaps = 5/119 (4%)
Query: 157 TNLLYDSDTPSYIERSDILLD----LYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAK 212
L + IE + +LL+ L VN TPLH+AA G + V+ L+ A
Sbjct: 112 LAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLL-EAG 170
Query: 213 IQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEAL 271
+ RN G T LD K ++ + L K + + V L
Sbjct: 171 ADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNL 229
>gnl|CDD|215883 pfam00374, NiFeSe_Hases, Nickel-dependent hydrogenase.
Length = 502
Score = 32.8 bits (75), Expect = 0.34
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 59 ADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRY 112
ADP +++ + SP Q +L+K +E G L W +P Y
Sbjct: 87 ADPKKASELAQSVSPWPKSPGYFKAVQN--RLKKFVESGQLGIFTNAYWGHPAY 138
Score = 32.8 bits (75), Expect = 0.34
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 319 ADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRY 372
ADP +++ + SP Q +L+K +E G L W +P Y
Sbjct: 87 ADPKKASELAQSVSPWPKSPGYFKAVQN--RLKKFVESGQLGIFTNAYWGHPAY 138
>gnl|CDD|225805 COG3266, DamX, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 292
Score = 32.2 bits (73), Expect = 0.37
Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 18/109 (16%)
Query: 49 APASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQ-------------ELVKLRKLIE 95
A A+ + V A P+ P A + + LKS + +
Sbjct: 173 ATATEAKVQTASPAQTPATP--PAGKGAAASGQLKSAPSSHYTLQLSASGSYDNVNGFAK 230
Query: 96 KGNLADVR---KLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNP 141
K NL P Y+V G++ T + L +A P
Sbjct: 231 KQNLKGYVVYETTRNGKPWYVVVYGNYATRQEAKAAVSTLPADVQAKKP 279
Score = 31.5 bits (71), Expect = 0.73
Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 18/90 (20%)
Query: 309 APASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQ-------------ELVKLRKLIE 355
A A+ + V A P+ P A + + LKS + +
Sbjct: 173 ATATEAKVQTASPAQTPATP--PAGKGAAASGQLKSAPSSHYTLQLSASGSYDNVNGFAK 230
Query: 356 KGNLADVR---KLVWDNPRYLVSSGDFPTI 382
K NL P Y+V G++ T
Sbjct: 231 KQNLKGYVVYETTRNGKPWYVVVYGNYATR 260
>gnl|CDD|201924 pfam01693, Cauli_VI, Caulimovirus viroplasmin. This family
consists of various caulimovirus viroplasmin proteins.
The viroplasmin protein is encoded by gene VI and is
the main component of viral inclusion bodies or
viroplasms. Inclusions are the site of viral assembly,
DNA synthesis and accumulation. Two domains exist
within gene VI corresponding approximately to the 5'
third and middle third of gene VI, these influence
systemic infection in a light-dependent manner.
Length = 43
Score = 28.6 bits (65), Expect = 0.59
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 3 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNF 34
++ + EE +K +KSF ++A+ F
Sbjct: 12 IYTSWEECKKQVKGFPGAIYKSFSTKEEAEAF 43
Score = 28.6 bits (65), Expect = 0.59
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 263 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNF 294
++ + EE +K +KSF ++A+ F
Sbjct: 12 IYTSWEECKKQVKGFPGAIYKSFSTKEEAEAF 43
>gnl|CDD|182281 PRK10170, PRK10170, hydrogenase 1 large subunit; Provisional.
Length = 597
Score = 31.9 bits (72), Expect = 0.64
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 59 ADPSALPQVS-SLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVS 115
ADP +++ SL++ K SP Q +L+K +E G L R W +P+Y +
Sbjct: 140 ADPRKTSELAQSLSSWPKSSPGYFFDVQN--RLKKFVEGGQLGIFRNGYWGHPQYKLP 195
Score = 31.9 bits (72), Expect = 0.64
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 319 ADPSALPQVS-SLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVS 375
ADP +++ SL++ K SP Q +L+K +E G L R W +P+Y +
Sbjct: 140 ADPRKTSELAQSLSSWPKSSPGYFFDVQN--RLKKFVEGGQLGIFRNGYWGHPQYKLP 195
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 30.8 bits (70), Expect = 1.2
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 173 DILLDL--YVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCF 230
+LL+ VN P++ TPLH + V +L+ A + ++K G+TPL V
Sbjct: 67 RLLLEAGADVNAPERC-GFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYL 125
Query: 231 KMPSVD 236
+++
Sbjct: 126 SGFNIN 131
Score = 29.6 bits (67), Expect = 3.1
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 17/113 (15%)
Query: 127 CRYNALH---VSTKAVNPAMTEMLLEIIGNPAFTNL-----LYDSDTPSYIERSDILLDL 178
+ LH S K + L+ +PA T++ L+ T S +RS +L L
Sbjct: 186 RFRSLLHHHLQSFKP-RARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLL 244
Query: 179 YVNTPDKALN---ETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
A N +TPLH+AA F + +RLI G + + +G TPL
Sbjct: 245 IAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGA---DINAVSSDGNTPL 294
>gnl|CDD|219782 pfam08292, RNA_pol_Rbc25, RNA polymerase III subunit Rpc25. Rpc25
is a strongly conserved subunit of RNA polymerase III
and has homology to Rpa43 in RNA polymerase I, Rpb7 in
RNA polymerase II and the archaeal RpoE subunit. Rpc25
is required for transcription initiation and is not
essential for the elongating properties of RNA
polymerase III.
Length = 121
Score = 28.1 bits (63), Expect = 3.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 258 EEGERVFDNKEEALLFIKKNKKIRFK 283
EE V++ EE L+ ++IRF+
Sbjct: 45 EEQAWVWEYDEETELYFDVGEEIRFR 70
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 29.5 bits (66), Expect = 3.5
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 189 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
TPLH A G V+ V+ L+ ++ +K+GKTPL++
Sbjct: 116 RTPLHIACANGHVQVVRVLLEFGA-DPTLLDKDGKTPLEL 154
>gnl|CDD|225588 COG3046, COG3046, Uncharacterized protein related to
deoxyribodipyrimidine photolyase [General function
prediction only].
Length = 505
Score = 29.0 bits (65), Expect = 5.2
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 11/76 (14%)
Query: 6 NKEEALLFIKKNKKIRFKSFRNFQDA----QNFAYHG--SCGVNTSLLEAPASPSTVTAA 59
+ +AL +K R +F ++QDA +H S +N LL +P V A
Sbjct: 226 TRTQALRALKHFIADRLPNFGSYQDAMSADDPHLWHSLLSFALNIGLL----TPLEVIRA 281
Query: 60 DPSAL-PQVSSLAAAE 74
A L + E
Sbjct: 282 ALKAYREGDIPLNSVE 297
Score = 29.0 bits (65), Expect = 5.2
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 11/76 (14%)
Query: 266 NKEEALLFIKKNKKIRFKSFRNFQDA----QNFAYHG--SCGVNTSLLEAPASPSTVTAA 319
+ +AL +K R +F ++QDA +H S +N LL +P V A
Sbjct: 226 TRTQALRALKHFIADRLPNFGSYQDAMSADDPHLWHSLLSFALNIGLL----TPLEVIRA 281
Query: 320 DPSAL-PQVSSLAAAE 334
A L + E
Sbjct: 282 ALKAYREGDIPLNSVE 297
>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 28.5 bits (64), Expect = 5.2
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 359 LADVRKLVWDNPRYLVSSGDFPTILHV--VCSRCSGASEDLK 398
L +RKL WD+P DF L++ R +G +ED K
Sbjct: 213 LGLIRKLYWDSP-----ENDFEEQLNLEREAQRIAGKTEDFK 249
>gnl|CDD|216206 pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane
region. There are also some members in this family that
do not match the Prosite motif, and belong to the
subfamily SODIT1.
Length = 471
Score = 28.8 bits (65), Expect = 5.5
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 42 VNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKS 81
V + LL APA PS A P + SL A +P K
Sbjct: 127 VFSDLLLAPAIPSNTARAGGIVFPIIMSLPPAFGSTPEKG 166
Score = 28.8 bits (65), Expect = 5.5
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 302 VNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKS 341
V + LL APA PS A P + SL A +P K
Sbjct: 127 VFSDLLLAPAIPSNTARAGGIVFPIIMSLPPAFGSTPEKG 166
>gnl|CDD|217789 pfam03915, AIP3, Actin interacting protein 3.
Length = 424
Score = 28.8 bits (65), Expect = 5.8
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 49 APASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKS--QELVKLRKL 93
A A PS+LP SS + P+ K L+S +EL LR+
Sbjct: 120 AKEVARPAAAPPPSSLPNSSSSPDSINPAGLKELQSLRRELAVLRQT 166
Score = 28.8 bits (65), Expect = 5.8
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 309 APASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKS--QELVKLRKL 353
A A PS+LP SS + P+ K L+S +EL LR+
Sbjct: 120 AKEVARPAAAPPPSSLPNSSSSPDSINPAGLKELQSLRRELAVLRQT 166
>gnl|CDD|235260 PRK04231, rpl3p, 50S ribosomal protein L3P; Reviewed.
Length = 337
Score = 28.7 bits (65), Expect = 6.2
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 76 PSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSS 116
P K K + KL KL+E+G + DVR +V P+ LV+
Sbjct: 115 TLPKKDEKKKAFEKLLKLLEEGKIVDVRVIVHTQPK-LVTG 154
Score = 28.7 bits (65), Expect = 6.2
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 336 PSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSS 376
P K K + KL KL+E+G + DVR +V P+ LV+
Sbjct: 115 TLPKKDEKKKAFEKLLKLLEEGKIVDVRVIVHTQPK-LVTG 154
>gnl|CDD|224746 COG1833, COG1833, Uri superfamily endonuclease [Replication,
recombination, and repair].
Length = 132
Score = 27.3 bits (61), Expect = 8.0
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 11 LLFIKKNKKIRFKSFRNFQDAQNFAYHGSCG 41
+ F+ + I+F S D +AY GS
Sbjct: 8 VFFLCTDVVIKFGSKGFHLDRGYYAYVGSAM 38
Score = 27.3 bits (61), Expect = 8.0
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 271 LLFIKKNKKIRFKSFRNFQDAQNFAYHGSCG 301
+ F+ + I+F S D +AY GS
Sbjct: 8 VFFLCTDVVIKFGSKGFHLDRGYYAYVGSAM 38
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.131 0.374
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,693,425
Number of extensions: 1844800
Number of successful extensions: 1919
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1911
Number of HSP's successfully gapped: 51
Length of query: 399
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 300
Effective length of database: 6,546,556
Effective search space: 1963966800
Effective search space used: 1963966800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)