RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1036
(399 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 70.1 bits (171), Expect = 5e-13
Identities = 81/435 (18%), Positives = 129/435 (29%), Gaps = 137/435 (31%)
Query: 37 HGSCGVNTSLLEAPASPSTVTAAD------PSALPQVS-SLAAAEKPSPFKSLKSQELVK 89
HGS + LL ++ A LP+ + AA ++P+ L + L
Sbjct: 13 HGS--LEHVLL---VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 90 LRKLIEKGNLA---DVRKLVWD--NPRYL--------VSS--GDFPTIL---HEGCR--Y 129
+ L+E + V L YL + + T L E +
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 130 NALHVSTKAVNPAMTEMLLE--------II------GNPA--FTNL--LYDSDTP---SY 168
A ++ + + L ++ GN F L LY +
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL 187
Query: 169 IERSDILLDLYVNTPDKA-------------LNE---TP----LHFAAKFGSVECVKRLI 208
I+ S L + T A L TP L + C LI
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP----ISCP--LI 241
Query: 209 GCAKIQTS----VRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVF 264
G IQ + G TP ++ + + A T+ E F
Sbjct: 242 GV--IQLAHYVVTAKLLGFTPGEL------RSYLKGATGHSQGLVTAVAIAETDSWESFF 293
Query: 265 DNKEEAL--LFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPS 322
+ +A+ LF I + +A P T+ PS
Sbjct: 294 VSVRKAITVLFF-----IGVRC----YEA-----------------YP-----NTSLPPS 322
Query: 323 ALPQVSSLAAAEK-PSPFKSLKSQELVKLRKLIEKGN--LADVRK----LVWDN-PRYLV 374
L SL E PSP S+ + +++ + K N L ++ LV N + LV
Sbjct: 323 ILED--SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV--NGAKNLV 378
Query: 375 SSGDFPTILHVVCSR 389
SG P L+ +
Sbjct: 379 VSG-PPQSLYGLNLT 392
Score = 46.2 bits (109), Expect = 2e-05
Identities = 56/337 (16%), Positives = 97/337 (28%), Gaps = 143/337 (42%)
Query: 91 RKLIEKGNLAD----------VRKLVWDNPRYLVSSGDFPTILHEGCR-------YNALH 133
+ + + AD + +V +NP L TI G + Y+A+
Sbjct: 1643 QDVWNR---ADNHFKDTYGFSILDIVINNPVNL-------TIHFGGEKGKRIRENYSAMI 1692
Query: 134 VSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDI-LLDLYVNT-PDKALNETP 191
T TE + + I + + SY RS+ LL T P AL
Sbjct: 1693 FETIVDGKLKTEKIFKEI----------NEHSTSYTFRSEKGLLSATQFTQP--AL---- 1736
Query: 192 LHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVA 251
+ + E +K +G P D F G S L
Sbjct: 1737 --TLMEKAAFEDLK--------------SKGLIPADATF-------AG-HS--L------ 1764
Query: 252 TKSEGTEEGE--------RVFDNKEEA--LLFIKKNKKIRFKSFRNF--QDAQNFAYHGS 299
GE V E ++F R + + +D + +G
Sbjct: 1765 --------GEYAALASLADVMS-IESLVEVVFY------RGMTMQVAVPRDELGRSNYGM 1809
Query: 300 CGVNTS------------------------LLEAPA---SPS--TVTAADPSALPQVSSL 330
+N L+E + V A D AL V+++
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVE-IVNYNVENQQYVAAGDLRALDTVTNV 1868
Query: 331 AAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVW 367
+K Q+ + + +L + +L +V ++
Sbjct: 1869 L--------NFIKLQK-IDIIELQKSLSLEEVEGHLF 1896
Score = 45.8 bits (108), Expect = 2e-05
Identities = 52/261 (19%), Positives = 81/261 (31%), Gaps = 87/261 (33%)
Query: 23 KSF-RNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEK-PSPFK 80
+SF + + A + GV P T+ PS L SL E PSP
Sbjct: 290 ESFFVSVRKAITVLFF--IGVR-CYEAYP-----NTSLPPSILED--SLENNEGVPSPML 339
Query: 81 SLKSQELVKLRKLIEKGN--LADVRK----LVWDN-PRYLVSSGDFPTILHEGCRYNALH 133
S+ + +++ + K N L ++ LV N + LV SG P L+ L
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLV--NGAKNLVVSG-PPQSLYGLNL--TLR 394
Query: 134 VSTKAVNPA--------MTEMLLEI------IGNPAFTNLLYD----------------- 162
KA P+ +E L+ + +P ++LL
Sbjct: 395 -KAKA--PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 163 -SD--TPSY---------IERSDI---LLDLYVNTP---DKALNETPLHFAAKFG--SVE 202
D P Y + I ++D + P + H FG
Sbjct: 452 AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD-FGPGGAS 510
Query: 203 CVKRLIGCAKIQTSVRNKEGK 223
+ L RNK+G
Sbjct: 511 GLGVLTH--------RNKDGT 523
Score = 34.3 bits (78), Expect = 0.096
Identities = 64/378 (16%), Positives = 110/378 (29%), Gaps = 145/378 (38%)
Query: 60 DPSALPQVSSLAAAEKPSPFKSLK-------SQELVKLRKL-IEKGNLAD--------VR 103
+PS P L + P S + +V + L G L +
Sbjct: 221 NPSNTPDKDYLLSI----PI-SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 104 KLV----------WDNPRYLVSSGDFPTIL-HEGCR-YNALHVSTKAVNPAMTEMLLEII 151
LV W++ + VS T+L G R Y A ++ P++ E LE
Sbjct: 276 GLVTAVAIAETDSWES--FFVSVRKAITVLFFIGVRCYEA--YPNTSLPPSILEDSLEN- 330
Query: 152 GNPAFTNLLYDSDTPSY------IERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVK 205
+ PS + + + +N+T H A
Sbjct: 331 ----------NEGVPSPMLSISNLTQEQV---------QDYVNKTNSHLPAG-------- 363
Query: 206 RLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGP------LSTKLTPTKVATKSEGTEE 259
+++ S+ N G L V GP L+ L K + G ++
Sbjct: 364 -----KQVEISLVN--GAKNLVVS---------GPPQSLYGLNLTLRKAKAPS---GLDQ 404
Query: 260 GERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNF----A-YHGSCGVNTSLLEAPASPS 314
F +K++F S R F + +H + LL PAS
Sbjct: 405 SRIPFS-----------ERKLKF-SNR-------FLPVASPFH------SHLLV-PASDL 438
Query: 315 TVTAADPSALP-QVSSLAAAEKPSP-FKSLKSQELVKLRKLIEKGNLAD--VRKLV-WDN 369
+ + + P + + +L L I + + D +R V W+
Sbjct: 439 INKDLVKNNVSFNAKDIQI-----PVYDTFDGSDLRVLSGSISE-RIVDCIIRLPVKWET 492
Query: 370 PRYLVSSGDFPTILHVVC 387
T H++
Sbjct: 493 ---TTQFK--AT--HILD 503
Score = 29.6 bits (66), Expect = 2.3
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 15/67 (22%)
Query: 46 LLEAPA---SPS--TVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLA 100
L+E + V A D AL V+++ +K Q+ + + +L + +L
Sbjct: 1840 LVE-IVNYNVENQQYVAAGDLRALDTVTNVL--------NFIKLQK-IDIIELQKSLSLE 1889
Query: 101 DVRKLVW 107
+V ++
Sbjct: 1890 EVEGHLF 1896
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.9 bits (139), Expect = 3e-09
Identities = 78/497 (15%), Positives = 161/497 (32%), Gaps = 154/497 (30%)
Query: 1 ERVFDNKEEALLFIKKN-------KKIRFKSFRNFQDAQNFAYHG--SCGVNTSL-LEAP 50
+R++++ + +F K N K+R ++ + A+N G G T + L+
Sbjct: 117 DRLYNDNQ---VFAKYNVSRLQPYLKLR-QALLELRPAKNVLIDGVLGSG-KTWVALDVC 171
Query: 51 ASPSTVTA--------------ADPSALPQVSSL---------AAAEKPSPFKSLKSQEL 87
S + + L + L + ++ S K
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 88 VKLRKLIEKGN-------LADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVN 140
+LR+L++ L + V + ++ + C+ L ++T+
Sbjct: 232 AELRRLLKSKPYENCLLVLLN----VQN--AKAWNAFNL------SCK--IL-LTTR--F 274
Query: 141 PAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNT-----PDKALNETPLH-- 193
+T+ L + + TP ++ LL Y++ P + L P
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKS---LLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 194 -FAAKFGSVECVKRL-----IGCAK----IQTSVRNKEGKTPLDV--CFKMPSVDSMGPL 241
A + + + C K I++S+ E P + F SV P
Sbjct: 332 IIAESI--RDGLATWDNWKHVNCDKLTTIIESSLNVLE---PAEYRKMFDRLSV---FPP 383
Query: 242 STKLTPTKVATK--SEGTEEGERVFDNKEEALLFIKKNKK----------IRFKSFRNFQ 289
S + PT + + + + V NK ++K K + K +
Sbjct: 384 SAHI-PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV----K 438
Query: 290 DAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQ-----------VSSLAAAEKPSP 338
+A H S+++ P T + D + ++ E+ +
Sbjct: 439 LENEYALH------RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 339 FKSLKSQELVKLR----KLIEKGN-----------LADVR---KLVWDN-PRY--LVSS- 376
F+ + + R K+ L ++ + DN P+Y LV++
Sbjct: 493 FRMV----FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
Query: 377 GDF-PTI-LHVVCSRCS 391
DF P I +++CS+ +
Sbjct: 549 LDFLPKIEENLICSKYT 565
Score = 49.1 bits (116), Expect = 2e-06
Identities = 58/373 (15%), Positives = 109/373 (29%), Gaps = 111/373 (29%)
Query: 88 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHV--------STKAV 139
V ++ + DV+ D P+ ++S + I+ + + V
Sbjct: 24 VFEDAFVDNFDCKDVQ----DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 140 NPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFG 199
+ E+L + L + S + +Y+ D+ N+ + FA
Sbjct: 80 QKFVEEVL-----RINY-KFLMSPIKTEQRQPSMM-TRMYIEQRDRLYNDNQV-FAKYN- 130
Query: 200 SVECVKRLIGCAKIQTSVRNKE-------------GKTPL--DVCF------KMPS---- 234
V RL K++ ++ GKT + DVC KM
Sbjct: 131 ----VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 235 ------------VDSMGPLSTKLTPTKVA----------TKSEGTEEGERVFDNK--EEA 270
++ + L ++ P + E R+ +K E
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 271 LLFIK--KNKKIRFKSFRNFQ--------DAQNFAYHGSCGVNTSLLEAPASPST----- 315
LL + +N K + +F N Q + + L+ + T
Sbjct: 247 LLVLLNVQNAKA-WNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 316 -----VTAADPSAL--------PQVSSLAAA---EKPSPFKSLKSQELVKLRKLIEKG-- 357
P L P+ S+ A + + + + K KL +IE
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 358 NL--ADVRKLVWD 368
L A+ RK+
Sbjct: 365 VLEPAEYRKMFDR 377
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 56.6 bits (136), Expect = 4e-09
Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 18/122 (14%)
Query: 121 TILHEGCRYNALHVSTKAVNPAMTEMLLEII---------GNPAFTNLLYDSDTPSYIER 171
TILH + + + A + ++ I+ G + D +
Sbjct: 203 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI 262
Query: 172 SDILLDLY-----VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTP 225
+ L + +N D +T L+ AA+ G++ V L+ A + NK G P
Sbjct: 263 LENLDLKWIIANMLNAQDSN-GDTCLNIAARLGNISIVDALLDYGADP--FIANKSGLRP 319
Query: 226 LD 227
+D
Sbjct: 320 VD 321
Score = 50.0 bits (119), Expect = 5e-07
Identities = 21/137 (15%), Positives = 45/137 (32%), Gaps = 12/137 (8%)
Query: 101 DVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL- 159
D+ +P ++ + P + + + + P + EM + + + N
Sbjct: 33 DLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSE 92
Query: 160 LYDSDTPSY----------IERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIG 209
S+ + + L +N P TPLH+ ++E VK L+
Sbjct: 93 GGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK 152
Query: 210 CAKIQTSVRNKEGKTPL 226
+ G++ L
Sbjct: 153 -HGSNRLYGDNMGESCL 168
Score = 36.5 bits (84), Expect = 0.011
Identities = 8/50 (16%), Positives = 14/50 (28%), Gaps = 4/50 (8%)
Query: 180 VNTPDKALNETPLHFAAKFG---SVECVKRLIGCAKIQTSVRNKEGKTPL 226
D E+ L A K + L+ + + +T L
Sbjct: 157 RLYGDNM-GESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL 205
Score = 27.7 bits (61), Expect = 8.1
Identities = 19/119 (15%), Positives = 32/119 (26%), Gaps = 46/119 (38%)
Query: 84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 143
+ ELVK L++ G ++ DN G + L + K+VN
Sbjct: 143 NLELVKH--LVKHG--SNRLYG--DN---------------MG--ESCLVKAVKSVNNYD 179
Query: 144 TEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVE 202
+ ++ L + D N T LH +
Sbjct: 180 SGTFEALL----------------------DYLYPCLILEDSM-NRTILHHIIITSGMT 215
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 51.9 bits (125), Expect = 6e-08
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 10/101 (9%)
Query: 131 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP----SYIERSDILLDLYVNTPDKA 186
+ + P + L G+ + SDT + R+ ++ YV ++
Sbjct: 15 KVFRALYTFEPRTPDELYIEEGDIIYIT--DMSDTNWWKGTSKGRTGLIPSNYVAEQAES 72
Query: 187 LNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+ PLH AAK G++ ++ + + + +K G T L
Sbjct: 73 -IDNPLHEAAKRGNLSWLRECLDNRVGV--NGLDKAGSTAL 110
Score = 50.3 bits (121), Expect = 2e-07
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
VN DKA T L++A G + V+ L I+ + +NK G T L
Sbjct: 99 VNGLDKA-GSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTAL 144
Score = 49.9 bits (120), Expect = 3e-07
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
+N +K L +T LH AA G + V+ L+ A+ +RN E K D+
Sbjct: 133 LNQQNK-LGDTALHAAAWKGYADIVQLLLAKGART--DLRNIEKKLAFDM 179
Score = 40.3 bits (95), Expect = 4e-04
Identities = 5/47 (10%), Positives = 12/47 (25%), Gaps = 2/47 (4%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
+ + + A +K+ G ++ N E
Sbjct: 166 TDLRNIE-KKLAFDMATNAACASLLKKKQG-TDAVRTLSNAEDYLDD 210
Score = 34.1 bits (79), Expect = 0.050
Identities = 5/46 (10%), Positives = 9/46 (19%), Gaps = 3/46 (6%)
Query: 183 PDKALN--ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
P K + + + A L + T
Sbjct: 5 PPKPVKPGQVKVFRALYTFEPRTPDELY-IEEGDIIYITDMSDTNW 49
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 50.6 bits (122), Expect = 2e-07
Identities = 31/157 (19%), Positives = 52/157 (33%), Gaps = 39/157 (24%)
Query: 84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 143
E+ + L+ G D D G+ T LH C A
Sbjct: 57 QPEIAEA--LLGAG--CDPELR--DF------RGN--TPLHLACEQG---------CLAS 93
Query: 144 TEMLLEIIGNPAFTNLL----YDSDTP-------SYIERSDILLDL--YVNTPDKALNET 190
+L + P ++L Y+ T Y+ ++L+ L VN + T
Sbjct: 94 VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT 153
Query: 191 PLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
LH A + + V L+ C A + + +G +P
Sbjct: 154 ALHLAVDLQNPDLVSLLLKCGADV--NRVTYQGYSPY 188
Score = 46.4 bits (111), Expect = 4e-06
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+N + L +TPLH A E + L+G +R+ G TPL
Sbjct: 38 LNFQNN-LQQTPLHLAVITNQPEIAEALLGAGCDP--ELRDFRGNTPL 82
Score = 37.1 bits (87), Expect = 0.006
Identities = 6/48 (12%), Positives = 12/48 (25%), Gaps = 2/48 (4%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 227
VN +P S ++L ++ E +
Sbjct: 177 VNRVTYQ-GYSPYQLTWGRPSTRIQQQLGQ-LTLENLQMLPESEDEES 222
Score = 36.4 bits (85), Expect = 0.008
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 189 ETPLHFAAKFGS----VECVKRLIGC-AKIQTSVRNKEGKTPL 226
++ LH A +E ++++ G A + + +N +TPL
Sbjct: 9 DSFLHLAIIHEEKALTMEVIRQVKGDLAFL--NFQNNLQQTPL 49
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 49.7 bits (120), Expect = 2e-07
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
+N ++ PLH+A +G + + L+ A + S+ NK G+ P+D
Sbjct: 98 INAVNE-HGNVPLHYACFWGQDQVAEDLVANGALV--SICNKYGEMPVDK 144
Score = 45.5 bits (109), Expect = 5e-06
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+N D +PLH+A + G V+ LI A+I V N+ TPL
Sbjct: 32 LNQGDDH-GFSPLHWACREGRSAVVEMLIMRGARIN--VMNRGDDTPL 76
Score = 45.1 bits (108), Expect = 7e-06
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+N ++ ++TPLH AA G + V++L+ A I + N+ G PL
Sbjct: 65 INVMNRG-DDTPLHLAASHGHRDIVQKLLQYKADI--NAVNEHGNVPL 109
Score = 42.0 bits (100), Expect = 8e-05
Identities = 5/37 (13%), Positives = 14/37 (37%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
+ + G+ V+ + + + + G +PL
Sbjct: 7 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPL 43
Score = 35.9 bits (84), Expect = 0.009
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI 208
V+ +K E P+ A +R
Sbjct: 131 VSICNKY-GEMPVDKAKAPLRELLRERAE 158
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 50.9 bits (123), Expect = 2e-07
Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 26/155 (16%)
Query: 84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 143
+ +K L ++G A+V T L + + +
Sbjct: 117 KVKALKF--LYKRG--ANVNLRRKTKEDQERLRKGGATALMDAAEKG---------HVEV 163
Query: 144 TEMLLEIIG-------NPAFTNLLY---DSDTPSYIERSDILLDLY--VNTPDKALNETP 191
++LL+ +G N L++ SD + +LLD VN + +TP
Sbjct: 164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER-GKTP 222
Query: 192 LHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
L A + + V+RL+ I+ + + +GKT L
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257
Score = 45.9 bits (110), Expect = 8e-06
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
VN ++ TPLH A + + V+ L+ A +R K G TP
Sbjct: 31 VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP--VLRKKNGATPF 76
Score = 44.4 bits (106), Expect = 3e-05
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
K TP AA GSV+ +K + A + + + G T
Sbjct: 65 PVLRKK-NGATPFLLAAIAGSVKLLKLFLSKGADV--NECDFYGFTAF 109
Score = 40.9 bits (97), Expect = 4e-04
Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 12/57 (21%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKI--------QTSVRNKEGKTPL 226
VN D T AA +G V+ +K L G A + K G T L
Sbjct: 98 VNECDF-YGFTAFMEAAVYGKVKALKFLYKRG-ANVNLRRKTKEDQERLRKGGATAL 152
Score = 39.4 bits (93), Expect = 0.001
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 188 NETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+ L A + V+ V++L+ A + + G TPL
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANV-NFQEEEGGWTPL 43
Score = 34.0 bits (79), Expect = 0.058
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI 208
+N D +T L A + + + L
Sbjct: 246 INDTDS-DGKTALLLAVELKLKKIAELLC 273
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 48.2 bits (116), Expect = 3e-07
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
+N PDK + TPL A G V CVK L+ A +V+ +G T +
Sbjct: 66 INAPDKH-HITPLLSAVYEGHVSCVKLLLSKGADK--TVKGPDGLTAFEA 112
Score = 42.0 bits (100), Expect = 4e-05
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 189 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+ +A K G ++ VK + + + + G+ PL
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGEDV--NRTLEGGRKPL 44
Score = 41.2 bits (98), Expect = 6e-05
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
VN + PLH+AA G +E ++ L+ G A I +K TPL
Sbjct: 33 VNRTLEG-GRKPLHYAADCGQLEILEFLLLKG-ADIN--APDKHHITPL 77
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 50.1 bits (121), Expect = 3e-07
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
V+ LN TPLH+A + G + V +L+ A S+ + EG + +
Sbjct: 68 VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP--SLIDGEGCSCI 113
Score = 49.0 bits (118), Expect = 7e-07
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLDV 228
VN DK T LH+A G+ + L+ A + +N +G++ LD+
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV--DAQNIKGESALDL 216
Score = 48.2 bits (116), Expect = 1e-06
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 179 YVNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
++ D + + A ++G E + L+ ++ +KE T L
Sbjct: 1 HMTHIDDY-STWDIVKATQYGIYERCRELVEAGYDVRQ--PDKENVTLL 46
Score = 43.2 bits (103), Expect = 6e-05
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+ D + +H AA+FG V LI + + ++ G TPL
Sbjct: 102 PSLIDGE-GCSCIHLAAQFGHTSIVAYLIAKGQDV--DMMDQNGMTPL 146
Score = 42.8 bits (102), Expect = 8e-05
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
V PDK N T LH+AA ++ VK I A + + TPL
Sbjct: 35 VRQPDKE-NVTLLHWAAINNRIDLVKYYISKGAIVD-QLGGDLNSTPL 80
Score = 37.4 bits (88), Expect = 0.004
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 180 VNTPDKALNETPLHFAAKFG-SVECVKRLIGC-AKIQTSVRNKEGKTPL 226
V+ D+ TPL +AA SV+ + L+ + T L
Sbjct: 135 VDMMDQ-NGMTPLMWAAYRTHSVDPTRLLLTFNVSV-NLGDKYHKNTAL 181
Score = 36.3 bits (85), Expect = 0.010
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI 208
V+ + E+ L A + +V + L
Sbjct: 203 VDAQNIK-GESALDLAKQRKNVWMINHLQ 230
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 49.8 bits (119), Expect = 4e-07
Identities = 35/147 (23%), Positives = 48/147 (32%), Gaps = 31/147 (21%)
Query: 86 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYN---ALHVSTKAVNPA 142
+ VKL L+E G ADV + R + G F C Y L ++
Sbjct: 104 QCVKL--LVENG--ADV------HLR---ACGRFFQKHQGTCFYFGELPLSLAACTKQWD 150
Query: 143 MTEMLLEIIGNPAFTNLLYDSD--TPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGS 200
+ LLE PA DS T L V D + + L G
Sbjct: 151 VVTYLLENPHQPASLEAT-DSLGNTV---------LHALVMIADNSPENSALVIHMYDGL 200
Query: 201 VECVKRLIG-CAKIQTSVRNKEGKTPL 226
++ RL + N +G TPL
Sbjct: 201 LQMGARLCPTVQLE--EISNHQGLTPL 225
Score = 39.0 bits (91), Expect = 0.002
Identities = 22/152 (14%), Positives = 42/152 (27%), Gaps = 40/152 (26%)
Query: 94 IEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCR----YNALHV---STKAVNPAMTEM 146
+ +G ++ L+ YL + + T L + + A
Sbjct: 10 VSRGVPEELTGLL----EYLRWNSKYLTD-SAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64
Query: 147 LLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKR 206
LL+I + L ++ + LH A + S++CVK
Sbjct: 65 LLQIDKDSGNPKPLVNAQ---------------CTDEFY-QGHSALHIAIEKRSLQCVKL 108
Query: 207 LI------------GCAKIQTSVRNKEGKTPL 226
L+ + G+ PL
Sbjct: 109 LVENGADVHLRACGRFFQKHQGTCFYFGELPL 140
Score = 30.1 bits (68), Expect = 1.1
Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 7/46 (15%)
Query: 188 NETPLHFAAKFGSVECVKRLI----GCAKIQTS---VRNKEGKTPL 226
+ L G E + L+ +K T GKT L
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCL 47
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 47.8 bits (115), Expect = 4e-07
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
++ + ++ L AA G VE V++L+ A + N+ G+ P+
Sbjct: 5 IHMLGGS-SDAGLATAAARGQVETVRQLLEAGADP--NALNRFGRRPI 49
Score = 44.4 bits (106), Expect = 6e-06
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
N D A P+H AA+ G ++ + L A++ V + G+ P+D+
Sbjct: 70 PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL--DVCDAWGRLPVDL 117
Score = 36.7 bits (86), Expect = 0.003
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI 208
++ D P+ A + G + + L
Sbjct: 104 LDVCDAW-GRLPVDLAEEQGHRDIARYLH 131
Score = 35.1 bits (82), Expect = 0.012
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 8/50 (16%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKT-PL 226
N ++ P+ GS + + L+ G A+ + + T P+
Sbjct: 38 PNALNRF-GRRPIQVMMM-GSAQVAELLLLHG-AEP--NCADPATLTRPV 82
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 48.3 bits (116), Expect = 6e-07
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDV 228
++ D T LH AA + E V+ L+ G A I V ++ G T L++
Sbjct: 102 LDHRDMRGGLTALHMAAGYVRPEVVEALVELG-ADI--EVEDERGLTALEL 149
Score = 46.7 bits (112), Expect = 2e-06
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 174 ILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
+ + + ETP AA+ + + +L+ + ++ G+T L
Sbjct: 32 PSSYIAADVVSE--YETPWWTAARKADEQALSQLLEDRDV--DAVDENGRTAL 80
Score = 42.9 bits (102), Expect = 4e-05
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
V+ D+ T L F A GS +CV+ L G A + + G T L
Sbjct: 69 VDAVDEN-GRTALLFVAGLGSDKCVRLLAEAG-ADLD-HRDMRGGLTAL 114
Score = 35.2 bits (82), Expect = 0.017
Identities = 6/38 (15%), Positives = 8/38 (21%), Gaps = 6/38 (15%)
Query: 190 TPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
K G A + E +TP
Sbjct: 16 MEYLIEWKDGHSPSWVPSSYIAADV-----VSEYETPW 48
Score = 33.6 bits (78), Expect = 0.049
Identities = 4/29 (13%), Positives = 8/29 (27%), Gaps = 1/29 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI 208
+ D+ T L A + +
Sbjct: 136 IEVEDER-GLTALELAREILKTTPKGNPM 163
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 47.0 bits (113), Expect = 7e-07
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
VNT N++PLH AAK G V+ VK L+ A + N G P+D
Sbjct: 69 VNTTGYQ-NDSPLHDAAKNGHVDIVKLLLSYGASR--NAVNIFGLRPVDY 115
Score = 43.6 bits (104), Expect = 1e-05
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 189 ETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
ET LH A+ G + V+ L+ G + V++ G TPL
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNG-SDPN--VKDHAGWTPL 47
Score = 42.4 bits (101), Expect = 4e-05
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 226
N D A TPLH A G ++ V+ L+ A + T + +PL
Sbjct: 36 PNVKDHA-GWTPLHEACNHGHLKVVELLLQHKALVNT--TGYQNDSPL 80
Score = 29.3 bits (67), Expect = 1.0
Identities = 2/29 (6%), Positives = 6/29 (20%), Gaps = 1/29 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI 208
N + P+ + +
Sbjct: 102 RNAVNIF-GLRPVDYTDDESMKSLLLLPE 129
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 49.5 bits (119), Expect = 7e-07
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+N P+ TPLH A + + ++ L+ A + R G+TPL
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP--TARMYGGRTPL 229
Score = 47.2 bits (113), Expect = 4e-06
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 179 YVNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 226
Y++ + L +T LH AA G V++L A + V + G T L
Sbjct: 37 YLDLQND-LGQTALHLAAILGEASTVEKLYAAGAGV--LVAERGGHTAL 82
Score = 46.4 bits (111), Expect = 7e-06
Identities = 29/156 (18%), Positives = 41/156 (26%), Gaps = 29/156 (18%)
Query: 84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHV--------- 134
V+ L G A V + G T LH CR A
Sbjct: 57 EASTVEK--LYAAG--AGVLVA--ER------GGH--TALHLACRVRAHTCACVLLQPRP 102
Query: 135 -STKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDL--YVNTPDKALNETP 191
+ + + + + DS E D + + TP
Sbjct: 103 SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD-GHTP 161
Query: 192 LHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
LH A E V+ L A + G+TPL
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPL 196
Score = 46.0 bits (110), Expect = 9e-06
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 189 ETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
+T LH A + L+ ++N G+T L
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTAL 49
Score = 44.8 bits (107), Expect = 2e-05
Identities = 7/50 (14%), Positives = 11/50 (22%), Gaps = 4/50 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
TPL A + + L A + +P
Sbjct: 218 PTARMYG-GRTPLGSALLRPNPILARLLRAHGAPE--PEDGGDKLSPCSS 264
Score = 28.3 bits (64), Expect = 3.8
Identities = 1/25 (4%), Positives = 4/25 (16%), Gaps = 1/25 (4%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECV 204
+P + +
Sbjct: 251 EPEDGGD-KLSPCSSSGSDSDSDNR 274
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 48.8 bits (117), Expect = 9e-07
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLD 227
++ D T LH AA + E V+ L+ G A I V ++ G T L+
Sbjct: 103 LDHRDMRGGLTALHMAAGYVRPEVVEALVELG-ADI--EVEDERGLTALE 149
Score = 45.7 bits (109), Expect = 8e-06
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 188 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
ETP AA+ + + +L+ + ++ G+T L
Sbjct: 45 YETPWWTAARKADEQALSQLLEDRDVD--AVDENGRTAL 81
Score = 41.4 bits (98), Expect = 2e-04
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
V+ D+ T L F A GS +CV+ L G A + + G T L
Sbjct: 70 VDAVDEN-GRTALLFVAGLGSDKCVRLLAEAG-ADLD-HRDMRGGLTAL 115
Score = 35.3 bits (82), Expect = 0.024
Identities = 13/100 (13%), Positives = 28/100 (28%), Gaps = 16/100 (16%)
Query: 131 ALHVSTKAVNPAMTEMLLEI---IGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKAL 187
AL ++ + + ++ IG N+L Y E +I+
Sbjct: 147 ALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVF-EYAEVDEIVEK------RGK- 198
Query: 188 NETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 226
+ + +C A+ K+ + L
Sbjct: 199 GKDVEYLVRWKDGGDCEWVKGVHVAEDVA----KDYEDGL 234
Score = 34.5 bits (80), Expect = 0.043
Identities = 4/29 (13%), Positives = 8/29 (27%), Gaps = 1/29 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI 208
+ D+ T L A + +
Sbjct: 137 IEVEDER-GLTALELAREILKTTPKGNPM 164
Score = 34.1 bits (79), Expect = 0.054
Identities = 6/38 (15%), Positives = 8/38 (21%), Gaps = 6/38 (15%)
Query: 190 TPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
K G A + E +TP
Sbjct: 17 MEYLIEWKDGHSPSWVPSSYIAADV-----VSEYETPW 49
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 49.8 bits (120), Expect = 9e-07
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 131 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP-------SYIERSDILLDL--YVN 181
LH++ + + M +LL N N TP ++ +D+L+ V+
Sbjct: 248 PLHLAAQEGHAEMVALLLSKQANGNLGN--KSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305
Query: 182 TPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+ TPLH A+ +G+++ VK L+ A + + + K G +PL
Sbjct: 306 ATTRM-GYTPLHVASHYGNIKLVKFLLQHQADV--NAKTKLGYSPL 348
Score = 47.9 bits (115), Expect = 4e-06
Identities = 36/151 (23%), Positives = 55/151 (36%), Gaps = 38/151 (25%)
Query: 86 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTE 145
+ +L L+E+ A + T LH +N N + +
Sbjct: 160 RVAEL--LLERD--AHPNAA--GK--------NGLTPLHVAVHHN---------NLDIVK 196
Query: 146 MLLEIIGNPAFTNLLYDSDTP-------SYIERSDILLDL--YVNTPDKALNETPLHFAA 196
+LL G+P ++ TP + +E + LL N TPLH AA
Sbjct: 197 LLLPRGGSPHSPA--WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ-GVTPLHLAA 253
Query: 197 KFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+ G E V L+ A ++ NK G TPL
Sbjct: 254 QEGHAEMVALLLSKQANG--NLGNKSGLTPL 282
Score = 47.5 bits (114), Expect = 5e-06
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
VN K +PLH AA+ G + V L+ + + +G TPL +
Sbjct: 337 VNAKTKL-GYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAI 383
Score = 47.1 bits (113), Expect = 6e-06
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
VN K ++TPLH AA+ G VK L+ A ++ G TPL
Sbjct: 73 VNAKAK-DDQTPLHCAARIGHTNMVKLLLENNANP--NLATTAGHTPL 117
Score = 46.7 bits (112), Expect = 7e-06
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
N + ETPLH AA+ G E K L+ AK+ + + K+ +TPL
Sbjct: 40 PNVSNVK-VETPLHMAARAGHTEVAKYLLQNKAKV--NAKAKDDQTPL 84
Score = 44.8 bits (107), Expect = 3e-05
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
++ TPLH A+ G + VK L+ A +V N + +TPL
Sbjct: 7 GGGGGES-GLTPLHVASFMGHLPIVKNLLQRGASP--NVSNVKVETPL 51
Score = 44.8 bits (107), Expect = 3e-05
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
K TPLH AAK+G V + L+ A + K G TPL
Sbjct: 139 QACMTKK-GFTPLHVAAKYGKVRVAELLLERDAHP--NAAGKNGLTPL 183
Score = 44.0 bits (105), Expect = 6e-05
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
N A TPLH AA+ G VE V L+ A + K+G TPL
Sbjct: 106 PNLATTA-GHTPLHIAAREGHVETVLALLEKEASQ--ACMTKKGFTPL 150
Score = 40.6 bits (96), Expect = 7e-04
Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 3/51 (5%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAK--IQTSVRNKEGKTPLDV 228
N TPL A + G + L V +K + +
Sbjct: 370 PNEVSSD-GTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPET 419
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 48.2 bits (116), Expect = 1e-06
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
V DK N+ PLH AA GS++ ++ L G + + + ++K+G TPL
Sbjct: 133 VRIKDKF-NQIPLHRAASVGSLKLIELLCGLGKSAV--NWQDKQGWTPL 178
Score = 47.1 bits (113), Expect = 3e-06
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
VN DK TPL A G + L+ + + + +G DV
Sbjct: 167 VNWQDKQ-GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214
Score = 45.5 bits (109), Expect = 1e-05
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 180 VNTPDKALN--ETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 226
VN D + TP H A G++E VK L K + +G T L
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL 111
Score = 42.8 bits (102), Expect = 7e-05
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 226
+N T LH A E + LI A + +++K + PL
Sbjct: 100 LNKITNQ-GVTCLHLAVGKKWFEVSQFLIENGASV--RIKDKFNQIPL 144
Score = 42.0 bits (100), Expect = 1e-04
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKI-QTSVRNKEGKTPL 226
+ D+ PLH++ F + E L+ + + G TP
Sbjct: 29 LLQKDQ-DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF 76
Score = 39.4 bits (93), Expect = 0.001
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 187 LNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
++ PLH A V+ L+ ++++G+ PL
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPL 40
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 49.0 bits (118), Expect = 1e-06
Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 40/155 (25%)
Query: 84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 143
S + V L L++ G A V+ ++ D + +HE R +
Sbjct: 137 SWDCVNL--LLQHG--ASVQP---ES--------DLASPIHEAARRG---------HVEC 172
Query: 144 TEMLLEIIGNP-AFTNLLYDSDTP-------SYIERSDILLDLYVNTPDKALN-ETPLHF 194
L+ GN + TP LL+ + ++ ++PLH
Sbjct: 173 VNSLIAYGGNIDHKIS---HLGTPLYLACENQQRACVKKLLESGAD-VNQGKGQDSPLHA 228
Query: 195 AAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
+ S E L+ A Q +N EGK P+++
Sbjct: 229 VVRTASEELACLLMDFGADTQ--AKNAEGKRPVEL 261
Score = 45.2 bits (108), Expect = 2e-05
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
VN + +PLH A G + CVK L+ A++ + TPL
Sbjct: 85 VNIITAD-HVSPLHEACLGGHLSCVKILLKHGAQVN--GVTADWHTPL 129
Score = 44.0 bits (105), Expect = 4e-05
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
VN TPL A GS +CV L+ G A +Q + +P+
Sbjct: 118 VNGVTAD-WHTPLFNACVSGSWDCVNLLLQHG-ASVQP---ESDLASPI 161
Score = 42.9 bits (102), Expect = 9e-05
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 162 DSDTPSYI-ERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRN 219
D P+ + I L D + +P+H AA G ++ LI +
Sbjct: 32 DGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNI--IT 89
Query: 220 KEGKTPL 226
+ +PL
Sbjct: 90 ADHVSPL 96
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 46.6 bits (112), Expect = 1e-06
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
VN PD P+H A + G V L + + R+ G TPL++
Sbjct: 94 VNVPDGT-GALPIHLAVQEGHTAVVSFLAAESDL--HRRDARGLTPLEL 139
Score = 43.9 bits (105), Expect = 1e-05
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
N D + +P+H AA+ G ++ +K L+ A + +V + G P+
Sbjct: 61 PNVQDTS-GTSPVHDAARTGFLDTLKVLVEHGADV--NVPDGTGALPI 105
Score = 39.7 bits (94), Expect = 4e-04
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 188 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
L AA G V+ V+RL+ + N+ GKT L
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTAL 40
Score = 39.3 bits (93), Expect = 5e-04
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
+ ++ +T L FGS L+ G A +V++ G +P+
Sbjct: 29 PDALNRF-GKTALQVMM-FGSTAIALELLKQG-ASP--NVQDTSGTSPV 72
Score = 33.9 bits (79), Expect = 0.033
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI 208
++ D TPL A + G+ + V L
Sbjct: 126 LHRRDAR-GLTPLELALQRGAQDLVDILQ 153
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 48.2 bits (116), Expect = 2e-06
Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 38/154 (24%)
Query: 84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 143
S + V L L++ G A V+ ++ D + +HE R +
Sbjct: 81 SWDCVNL--LLQHG--ASVQP---ES--------DLASPIHEAARRG---------HVEC 116
Query: 144 TEMLLEIIGNPAFTNLLYDSDTP-------SYIERSDILLDLYVNTPDKALN-ETPLHFA 195
L+ GN TP LL+ + ++ ++PLH
Sbjct: 117 VNSLIAYGGNIDHKI--SHLGTPLYLACENQQRACVKKLLESGAD-VNQGKGQDSPLHAV 173
Query: 196 AKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
A+ S E L+ A Q +N EGK P+++
Sbjct: 174 ARTASEELACLLMDFGADTQ--AKNAEGKRPVEL 205
Score = 46.7 bits (112), Expect = 5e-06
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
VN + +PLH A G + CVK L+ A++ + + TPL
Sbjct: 29 VNIITAD-HVSPLHEACLGGHLSCVKILLKHGAQV--NGVTADWHTPL 73
Score = 45.1 bits (108), Expect = 1e-05
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
VN TPL A GS +CV L+ A +Q + +P+
Sbjct: 62 VNGVTAD-WHTPLFNACVSGSWDCVNLLLQHGASVQP---ESDLASPI 105
Score = 40.9 bits (97), Expect = 3e-04
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 189 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+P+H AA G ++ LI + ++ + +PL
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAV--NIITADHVSPL 40
Score = 34.3 bits (80), Expect = 0.043
Identities = 17/132 (12%), Positives = 34/132 (25%), Gaps = 34/132 (25%)
Query: 84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 143
+ VK L+E G ADV + + LH R + +
Sbjct: 146 QRACVKK--LLESG--ADVNQ---GK--------GQDSPLHAVARTASEEL--------- 181
Query: 144 TEMLLEIIGNPAFTNLLYDSDTPSYI--ERSDI--LLDLY---VNTPDKALNETPLHFAA 196
+L++ + N + P + S + L +
Sbjct: 182 ACLLMDFGADTQAKN--AEGKRPVELVPPESPLAQLFLEREGPPSLMQLC-RLRIRKCFG 238
Query: 197 KFGSVECVKRLI 208
+ K ++
Sbjct: 239 IQQHHKITKLVL 250
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 45.9 bits (110), Expect = 3e-06
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDV 228
N D A P+H AA+ G ++ + L G A++ VR+ G+ P+D+
Sbjct: 70 PNCADPATLTRPVHDAAREGFLDTLVVLHRAG-ARL--DVRDAWGRLPVDL 117
Score = 43.2 bits (103), Expect = 2e-05
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 189 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
L AA G VE V+ L+ A + N G+ P+
Sbjct: 13 ADWLATAAARGRVEEVRALLEAGANP--NAPNSYGRRPI 49
Score = 40.9 bits (97), Expect = 1e-04
Identities = 6/50 (12%), Positives = 13/50 (26%), Gaps = 9/50 (18%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
++ D P+ A + G + + L G +
Sbjct: 104 LDVRDAW-GRLPVDLAEELGHRDVARYLRAAAG-------GTRGSNHARI 145
Score = 34.8 bits (81), Expect = 0.018
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKT-PL 226
N P+ P+ GS + L+ G A+ + + T P+
Sbjct: 38 PNAPNSY-GRRPIQVMMM-GSARVAELLLLHG-AEP--NCADPATLTRPV 82
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 47.2 bits (113), Expect = 3e-06
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRN---KEGKTPL 226
V+ + ET LH AA + ++E L+ ++ EG+T L
Sbjct: 30 VHQRGA-MGETALHIAALYDNLEAAMVLMEAA-PELVFEPMTSELYEGQTAL 79
Score = 45.3 bits (108), Expect = 1e-05
Identities = 33/145 (22%), Positives = 48/145 (33%), Gaps = 37/145 (25%)
Query: 84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 143
+ E + L+E ++ + Y EG ALH++ N +
Sbjct: 49 NLEAAMV--LMEAA--PELVFEPMTSELY------------EG--QTALHIAVINQNVNL 90
Query: 144 TEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVEC 203
LL A + R+ + Y E PL FAA GS E
Sbjct: 91 VRALLA---RGASVS-----------ARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEI 136
Query: 204 VKRLI--GCAKIQTSVRNKEGKTPL 226
V+ LI G A I ++ G T L
Sbjct: 137 VRLLIEHG-ADI--RAQDSLGNTVL 158
Score = 41.4 bits (98), Expect = 2e-04
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 189 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
E+PL AAK V+ + +L+ + R G+T L
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETAL 41
Score = 36.4 bits (85), Expect = 0.009
Identities = 26/125 (20%), Positives = 38/125 (30%), Gaps = 40/125 (32%)
Query: 84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 143
S+E+V+L LIE G AD+R D+ T+LH K M
Sbjct: 133 SEEIVRL--LIEHG--ADIRA--QDSLGN--------TVLHILILQP-----NKTFACQM 173
Query: 144 TEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVEC 203
+LL L P+ TP A G++
Sbjct: 174 YNLLLSY--------------------DGGDHLKSLELVPNNQ-GLTPFKLAGVEGNIVM 212
Query: 204 VKRLI 208
+ L+
Sbjct: 213 FQHLM 217
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 47.5 bits (114), Expect = 3e-06
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDVC 229
VN D TPLH AA +G E + L+ + NK G+T DV
Sbjct: 225 VNIKDYD-GWTPLHAAAHWGKEEACRILVENLCDM--EAVNKVGQTAFDVA 272
Score = 45.2 bits (108), Expect = 2e-05
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDVC 229
+N PD PLH AA G ++ + LI A + N EG TPLD+
Sbjct: 99 INQPDN-EGWIPLHAAASCGYLDIAEYLISQGAHV--GAVNSEGDTPLDIA 146
Score = 43.3 bits (103), Expect = 6e-05
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 21/106 (19%)
Query: 131 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLY---------VN 181
L ++ + + + + G D + E +L D
Sbjct: 142 PLDIAEEEAMEELLQNEVNRQGV--------DIEAARKEEERIMLRDARQWLNSGHINDV 193
Query: 182 TPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
K+ T LH AA G E +K LI + ++++ +G TPL
Sbjct: 194 RHAKS-GGTALHVAAAKGYTEVLKLLIQARYDV--NIKDYDGWTPL 236
Score = 40.9 bits (97), Expect = 4e-04
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+N + T LH A +V+ VK L+ A I + + EG PL
Sbjct: 66 INYANVD-GLTALHQACIDDNVDMVKFLVENGANI--NQPDNEGWIPL 110
Score = 40.9 bits (97), Expect = 4e-04
Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+ A G E V RL+ A I N +G T L
Sbjct: 34 TKVKFD--DGAVFLAACSSGDTEEVLRLLERGADINY--ANVDGLTAL 77
Score = 34.4 bits (80), Expect = 0.048
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 189 ETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
+TPL A + E ++ + I+ + KE + +
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAA--RKEEERIM 177
Score = 30.9 bits (71), Expect = 0.67
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 186 ALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
A + GS ++ + K + V+ +G L
Sbjct: 6 AKQKRNEQLKRWIGSETDLEPPVVKRKKTK--VKFDDGAVFL 45
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 47.1 bits (112), Expect = 3e-06
Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 29/144 (20%)
Query: 86 ELVKLRKLIEKG-NLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMT 144
+ + L L++ +++ V + G ALH++ + N +
Sbjct: 71 DTIAL--LLDVARKTDSLKQFVNASYTDSYYKG-----------QTALHIAIERRNMTLV 117
Query: 145 EMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECV 204
+L+E N A + + +++ Y E PL AA + V
Sbjct: 118 TLLVE---NGADVQA---AANGDFFKKTKGRPGFY-------FGELPLSLAACTNQLAIV 164
Query: 205 KRLI--GCAKIQTSVRNKEGKTPL 226
K L+ S R+ G T L
Sbjct: 165 KFLLQNSWQPADISARDSVGNTVL 188
Score = 44.4 bits (105), Expect = 2e-05
Identities = 20/142 (14%), Positives = 36/142 (25%), Gaps = 41/142 (28%)
Query: 86 ELVKLRKLIEKG-NLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMT 144
+VK L++ AD+ D+ G+ T+LH V +M
Sbjct: 162 AIVKF--LLQNSWQPADISAR--DS------VGN--TVLHALVEVADNTVDNTKFVTSMY 209
Query: 145 EMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECV 204
+L + ++ TPL AA G + +
Sbjct: 210 NEILILGAK-------------------LHPTLKLEEITNRK-GLTPLALAASSGKIGVL 249
Query: 205 KRLIGCAKIQTSVRNKEGKTPL 226
++ R
Sbjct: 250 AYILQ--------REIHEPECR 263
Score = 36.7 bits (85), Expect = 0.009
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 13/60 (21%)
Query: 180 VNTPDKALNETPLHFA---AKFGSVECVKRLIGCAKIQTSVR----------NKEGKTPL 226
D +T L A G + + L+ A+ S++ +G+T L
Sbjct: 46 SEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTAL 105
Score = 32.8 bits (75), Expect = 0.16
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 7/54 (12%)
Query: 183 PDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSV-------RNKEGKTPLDVC 229
P + + + A + + ++ L+ + + GKT L
Sbjct: 8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 46.7 bits (111), Expect = 5e-06
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 189 ETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
E PL AA V L G + ++ G T L
Sbjct: 141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180
Score = 40.1 bits (94), Expect = 7e-04
Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 33/126 (26%)
Query: 84 SQELVKLRKLIEKG-NLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPA 142
+V L E G AD+R+ D+ G+ T+LH
Sbjct: 152 QPHIVHY--LTENGHKQADLRR--QDS------RGN--TVLHALVAIADNTRENTKFVTK 199
Query: 143 MTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVE 202
M ++LL + + + +PL AAK G +
Sbjct: 200 MYDLLLI-----------KCAKLFPDTNLEAL--------LNND-GLSPLMMAAKTGKIG 239
Query: 203 CVKRLI 208
+ +I
Sbjct: 240 IFQHII 245
Score = 38.2 bits (89), Expect = 0.003
Identities = 22/161 (13%), Positives = 45/161 (27%), Gaps = 57/161 (35%)
Query: 94 IEKGNLADVRKLVWDNPRYLVSSG------DFP------TILHEGCRYNALHVSTKAVNP 141
+ +G+ + L+ +L++ +F T L L++S +
Sbjct: 13 VSRGSPDGLEGLL----SFLLTHKKRLTDEEFREPSTGKTCLP----KALLNLSAGRND- 63
Query: 142 AMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALN---ETPLHFAAKF 198
+LL+I +N+P + + +T LH A +
Sbjct: 64 -TIPILLDIAEKTGNMREF-------------------INSPFRDVYYRGQTALHIAIER 103
Query: 199 GSVECVKRLI-------------GCAKIQTSVRNKEGKTPL 226
V+ L+ G+ PL
Sbjct: 104 RCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPL 144
Score = 33.2 bits (76), Expect = 0.12
Identities = 29/161 (18%), Positives = 45/161 (27%), Gaps = 54/161 (33%)
Query: 84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYN---ALHVSTKAVN 140
+ V+L L+EKG ADV + + F G Y L ++
Sbjct: 105 CKHYVEL--LVEKG--ADV------HAQ--ARGRFFQPKDEGGYFYFGELPLSLAACTNQ 152
Query: 141 PAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFG- 199
P + L E A D+ D N T LH
Sbjct: 153 PHIVHYLTENGHKQA-----------------DL------RRQDSRGN-TVLHALVAIAD 188
Query: 200 -SVECVKRLIGCAKI-------------QTSVRNKEGKTPL 226
+ E K + + ++ N +G +PL
Sbjct: 189 NTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPL 229
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 46.3 bits (111), Expect = 6e-06
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSV--RNKEGKTPL 226
D+ +T H A + S C++ L+ A + RN +G T L
Sbjct: 72 PMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120
Score = 44.8 bits (107), Expect = 2e-05
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
++ + L +TPLH A V+ L+ A ++ G+T
Sbjct: 39 LDIYNN-LRQTPLHLAVITTLPSVVRLLVTAGASP--MALDRHGQTAA 83
Score = 44.4 bits (106), Expect = 3e-05
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
++ D +PL A + S+ V+ L+ A + + G + L
Sbjct: 142 IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN--AQMYSGSSAL 187
Score = 44.0 bits (105), Expect = 3e-05
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
VN + + LH A+ G + V+ L+ A S++N TPL V
Sbjct: 176 VNAQMYS-GSSALHSASGRGLLPLVRTLVRSGADS--SLKNCHNDTPLMV 222
Score = 42.1 bits (100), Expect = 1e-04
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 189 ETPLHFAAKFGSVECVKRLIGC-----AKIQTSVRNKEGKTPL 226
+TPLH A G++ V RL+ ++ + N +TPL
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGREL--DIYNNLRQTPL 50
Score = 40.5 bits (96), Expect = 4e-04
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+ + T LH A E V+ L+ A I +V K G++PL
Sbjct: 109 LEARNYD-GLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPL 154
Score = 35.9 bits (84), Expect = 0.014
Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI 208
+ + N+TPL A ++ ++
Sbjct: 209 SSLKNCH-NDTPLMVARSRRVIDILRGKA 236
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 45.1 bits (108), Expect = 6e-06
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
+N D TPL +A + V+CV+ L+ A + + G TP+D+
Sbjct: 95 INIYDWN-GGTPLLYAVRGNHVKCVEALLARGADL--TTEADSGYTPMDL 141
Score = 43.9 bits (105), Expect = 2e-05
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+ K E+ L A+ G + V L+ I + + G TPL
Sbjct: 62 PHILAKE-RESALSLASTGGYTDIVGLLLERDVDIN--IYDWNGGTPL 106
Score = 43.6 bits (104), Expect = 2e-05
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 190 TPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
+H A G ++ +K + G + + ++ G TPL
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLV--NKPDERGFTPL 40
Score = 43.2 bits (103), Expect = 3e-05
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
VN PD+ TPL +A+ FG +E V+ L+ G A + KE ++ L
Sbjct: 29 VNKPDER-GFTPLIWASAFGEIETVRFLLEWG-ADP--HILAKERESAL 73
Score = 42.0 bits (100), Expect = 7e-05
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 6/48 (12%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTP 225
+ T + TP+ A G + + + K+ N P
Sbjct: 128 LTTEADS-GYTPMDLAVALGYRKVQQVIENHI-LKL--FQSNLVPADP 171
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 46.8 bits (112), Expect = 6e-06
Identities = 17/145 (11%), Positives = 43/145 (29%), Gaps = 48/145 (33%)
Query: 83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPA 142
+ E++K+ L++ G A D T L + N
Sbjct: 151 EYLEMIKI--LVQLG--ASPTAK--DK--------ADETPLMRAMEFR---------NRE 187
Query: 143 MTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVE 202
+++++ + + + ++ +K + LH+A +
Sbjct: 188 ALDLMMDTVPSKSSLR---------------------LDYANK-QGNSHLHWAILINWED 225
Query: 203 CVKRLIGC-AKIQTSVRNKEGKTPL 226
R + + ++ + E PL
Sbjct: 226 VAMRFVEMGIDV--NMEDNEHTVPL 248
Score = 46.4 bits (111), Expect = 9e-06
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
D N +H AA+ G + V+RLI +++N+ G T L
Sbjct: 13 RIKSDDE-NMEKIHVAARKGQTDEVRRLIETGVSP--TIQNRFGCTAL 57
Score = 44.9 bits (107), Expect = 2e-05
Identities = 14/119 (11%), Positives = 28/119 (23%), Gaps = 24/119 (20%)
Query: 131 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY-----------DSDTPSYI-------ERS 172
L++S +A +T+ LL+ Y E
Sbjct: 247 PLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVL 306
Query: 173 DILLD--LYVNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLDV 228
+L + V K + + + A + R++ V
Sbjct: 307 QLLQEKLDEVVRSLNT-GAGGAVKRKKKAAPAVKRMKLAPSAPV--RTRSRSRARSSAV 362
Score = 44.5 bits (106), Expect = 4e-05
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 226
++ T LH A KFG V+ K L G+ P+
Sbjct: 46 PTIQNR-FGCTALHLACKFGCVDTAKYLASVGEVHSL----WHGQKPI 88
Score = 42.2 bits (100), Expect = 2e-04
Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 10/47 (21%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
+ + P+H A + V L+ + G+ P
Sbjct: 79 HSLWH---GQKPIHLAVMANKTDLVVALV-------EGAKERGQMPE 115
Score = 41.8 bits (99), Expect = 3e-04
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
VN D + PL+ + + V K L+ + + G T L
Sbjct: 237 VNMEDNE-HTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVL 284
Score = 37.9 bits (89), Expect = 0.004
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 7/39 (17%)
Query: 188 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
+ P + E + V++ +G+T L
Sbjct: 111 GQMPESLLNECDEREVNEIGS-------HVKHCKGQTAL 142
Score = 37.5 bits (88), Expect = 0.006
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 180 VNTPDKALNETPLHFAAKFG--SVECVKRLI--GCAKIQTSVRNKEGKTPL 226
+ +T LH+ G +E +K L+ G A + ++K +TPL
Sbjct: 131 SHVKHCK-GQTALHWCVGLGPEYLEMIKILVQLG-ASP--TAKDKADETPL 177
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 44.7 bits (107), Expect = 8e-06
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDV 228
VN D TPLH AA G E K L+ G A + +N++G TPLD+
Sbjct: 101 VNVADL-WKFTPLHEAAAKGKYEICKLLLQHG-ADP--TKKNRDGNTPLDL 147
Score = 43.9 bits (105), Expect = 1e-05
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 189 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
+ L AAK G VE VK+L + TPL
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPL 46
Score = 43.5 bits (104), Expect = 2e-05
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+ TPLHFAA + V V+ L+ A + ++K G PL
Sbjct: 35 CRDIEG-RQSTPLHFAAGYNRVSVVEYLLQHGADV--HAKDKGGLVPL 79
Score = 41.2 bits (98), Expect = 1e-04
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
V+ DK PLH A +G E + L+ G A + +V + TPL
Sbjct: 68 VHAKDKG-GLVPLHNACSYGHYEVAELLVKHG-AVV--NVADLWKFTPL 112
Score = 27.4 bits (62), Expect = 5.2
Identities = 5/29 (17%), Positives = 8/29 (27%), Gaps = 2/29 (6%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI 208
++ TPL G + L
Sbjct: 134 PTKKNRD-GNTPLDLVKD-GDTDIQDLLR 160
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 45.9 bits (110), Expect = 8e-06
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
V+ D T LH AAK G E V+ L+ ++ + ++ G TP+
Sbjct: 70 VDPKDAE-GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115
Score = 45.1 bits (108), Expect = 1e-05
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLDV 228
++ + ++PLH AA+ +CV + + + ++NKEG+TPL
Sbjct: 170 LHAVNIH-GDSPLHIAARENRYDCVVLFLSRDSDVT--LKNKEGETPLQC 216
Score = 45.1 bits (108), Expect = 1e-05
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+ +PLH AA+ G V+ L+ A I +++ +TPL
Sbjct: 4 FKMEHQN-KRSPLHAAAEAGHVDICHMLVQAGANI--DTCSEDQRTPL 48
Score = 43.6 bits (104), Expect = 4e-05
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+N D LH+AA G V+ + L+ + N G +PL
Sbjct: 137 INIRDNE-ENICLHWAAFSGCVDIAEILLAAKCDL--HAVNIHGDSPL 181
Score = 43.6 bits (104), Expect = 4e-05
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
++T + TPL AA+ +E VK LI A + ++ EG T L
Sbjct: 37 IDTCSED-QRTPLMEAAENNHLEAVKYLIKAGALVDP--KDAEGSTCL 81
Score = 43.2 bits (103), Expect = 6e-05
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
VN D TP+ +A ++ V+ VK L+ + I +R+ E L
Sbjct: 104 VNCQDDG-GWTPMIWATEYKHVDLVKLLLSKGSDIN--IRDNEENICL 148
Score = 35.5 bits (83), Expect = 0.020
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIG 209
V +K ETPL A+ V ++
Sbjct: 203 VTLKNKE-GETPLQCASLNSQVWSALQMSK 231
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 46.0 bits (110), Expect = 8e-06
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
N + NE PLH AA + VK L+ S + +G T L
Sbjct: 57 KNLLE---NEFPLHQAATLEDTKIVKILLFSGLDD--SQFDDKGNTAL 99
Score = 44.8 bits (107), Expect = 2e-05
Identities = 5/49 (10%), Positives = 12/49 (24%), Gaps = 6/49 (12%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
+ K +T + A V V + + + +
Sbjct: 121 LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD----LAILLSCI 165
Score = 42.1 bits (100), Expect = 2e-04
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 6/48 (12%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
D + ++A +V V L+ A E + PL
Sbjct: 24 TFKADVH-GHSASYYAIADNNVRLVCTLLNAGALKNL----LENEFPL 66
Score = 42.1 bits (100), Expect = 2e-04
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 189 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
+ +H K G V+ + L+ T+ N P
Sbjct: 162 LSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPD 198
Score = 39.8 bits (94), Expect = 0.001
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEG-KTPL 226
+ D T L++A G+++ VK + ++ K G KT
Sbjct: 88 DSQFDD-KGNTALYYAVDSGNMQTVKLFVKKN-WRL--MFYGKTGWKTSF 133
Score = 33.7 bits (78), Expect = 0.089
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI 208
NT + L + A +E ++ L
Sbjct: 187 TNTNNSLLFIPDIKLAIDNKDIEMLQALF 215
Score = 32.1 bits (74), Expect = 0.23
Identities = 3/39 (7%), Positives = 10/39 (25%), Gaps = 3/39 (7%)
Query: 189 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+ E K +I + ++ + +
Sbjct: 222 YSANLENVLLDDAEIAKMIIEKHVEYKS--DSYTKDLDI 258
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 44.7 bits (107), Expect = 8e-06
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDV 228
VN D PLH AAK G + V+ L+ + + RN +G T D+
Sbjct: 96 VNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTASNV--GHRNHKGDTACDL 143
Score = 43.1 bits (103), Expect = 2e-05
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 189 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
L AA G +E + L+ + + +N G+T L
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNV--NAQNGFGRTAL 42
Score = 43.1 bits (103), Expect = 3e-05
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 226
+ D+ +H AA+ G ++ ++ L+ A + ++ + EG PL
Sbjct: 63 PDLKDRT-GFAVIHDAARAGFLDTLQTLLEFQADV--NIEDNEGNLPL 107
Score = 38.5 bits (91), Expect = 0.001
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
VN + T L G+ E +RL+ A ++++ G +
Sbjct: 31 VNAQNGF-GRTALQVMK-LGNPEIARRLLLRGANPD--LKDRTGFAVI 74
Score = 33.5 bits (78), Expect = 0.044
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 189 ETPLHFAAKFGSVECVKRLI 208
+T A +G E V +
Sbjct: 138 DTACDLARLYGRNEVVSLMQ 157
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 46.1 bits (109), Expect = 9e-06
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 29/100 (29%)
Query: 131 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNET 190
LH++ K N A ++ II N ++ A T
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGH-----------------------LDAKA-ADGNT 228
Query: 191 PLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDV 228
LH+AA + +C+K L+ N+ G+T LD+
Sbjct: 229 ALHYAALYNQPDCLKLLLKGRAL---VGTVNEAGETALDI 265
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 44.3 bits (106), Expect = 1e-05
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLD 227
VN D L T LH+A + E V+ LI G A + ++K KT D
Sbjct: 93 VNAKDM-LKMTALHWATEHNHQEVVELLIKYG-ADV--HTQSKFCKTAFD 138
Score = 42.4 bits (101), Expect = 4e-05
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+ K + TPLH AA G V+ L+ A + + ++ T L
Sbjct: 60 RDARTKV-DRTPLHMAASEGHANIVEVLLKHGADV--NAKDMLKMTAL 104
Score = 42.4 bits (101), Expect = 4e-05
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 189 ETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 226
+PLH AA++G + L+ R K +TPL
Sbjct: 35 TSPLHLAAQYGHFSTTEVLLRAGVSR--DARTKVDRTPL 71
Score = 41.2 bits (98), Expect = 1e-04
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 189 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
L AA+ G + V+ L+ A T + G +PL
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGAPFTT---DWLGTSPL 38
Score = 30.8 bits (71), Expect = 0.39
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRL 207
V+T K +T + G+ + + L
Sbjct: 126 VHTQSKF-CKTAFDISIDNGNEDLAEIL 152
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 43.1 bits (103), Expect = 1e-05
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
VN K TPLH AAK G E VK L+ A + R+K+G TP
Sbjct: 35 VNARSKD-GNTPLHLAAKNGHAEIVKLLLAKGADVN--ARSKDGNTPE 79
Score = 42.8 bits (102), Expect = 2e-05
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 190 TPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
TP H A K G E VK L G A + + R+
Sbjct: 77 TPEHLAKKNGHHEIVKLLDAKG-ADV--NARSWGSSHHH 112
Score = 41.2 bits (98), Expect = 6e-05
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 189 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
TPLH AAK G E VK+L+ A + + R+K+G TPL
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADV--NARSKDGNTPL 46
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 44.3 bits (106), Expect = 1e-05
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 188 NETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
N +H A G + + I I ++EG TPL
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINH--TDEEGFTPL 40
Score = 44.3 bits (106), Expect = 1e-05
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
VN D TPL +A V+CVK L+ A ++ G +D+
Sbjct: 95 VNEYDWN-GGTPLLYAVHGNHVKCVKMLLESGADP--TIETDSGYNSMDL 141
Score = 43.5 bits (104), Expect = 2e-05
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
K E+ L A G + VK L+ C + + G TPL
Sbjct: 62 PQLLGKG-RESALSLACSKGYTDIVKMLLDCGVDVN--EYDWNGGTPL 106
Score = 43.5 bits (104), Expect = 2e-05
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
+N D+ TPL +AA G + V+ L+ G A + K ++ L
Sbjct: 29 INHTDEE-GFTPLMWAAAHGQIAVVEFLLQNG-ADP--QLLGKGRESAL 73
Score = 34.3 bits (80), Expect = 0.029
Identities = 2/29 (6%), Positives = 6/29 (20%), Gaps = 1/29 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI 208
+ + A G + +
Sbjct: 128 PTIETDS-GYNSMDLAVALGYRSVQQVIE 155
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 45.9 bits (110), Expect = 1e-05
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
VN D TPLH AA VE L+ A ++ N GK+ +D+
Sbjct: 117 VNAMDLW-QFTPLHEAASKNRVEVCSLLLSHGADP--TLVNCHGKSAVDM 163
Score = 45.6 bits (109), Expect = 1e-05
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
+N D L +T LH AA G ++ + L+ + S+ + +G T +
Sbjct: 273 MNALDS-LGQTALHRAALAGHLQTCRLLLSYGSDP--SIISLQGFTAAQM 319
Score = 45.6 bits (109), Expect = 2e-05
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
VN +K TPLH AA+ + ++ L AK+ + + G+T L
Sbjct: 240 VNEKNK-DFMTPLHVAAERAHNDVMEVLHKHGAKM--NALDSLGQTAL 284
Score = 45.2 bits (108), Expect = 2e-05
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
V+ DK PLH A +G E + L+ A + + + TPL
Sbjct: 84 VHAKDKG-GLVPLHNACSYGHYEVTELLLKHGACV--NAMDLWQFTPL 128
Score = 44.8 bits (107), Expect = 3e-05
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+ D TPLH AA + V V+ L+ A + ++K G PL
Sbjct: 51 CHASDG-RKSTPLHLAAGYNRVRIVQLLLQHGADV--HAKDKGGLVPL 95
Score = 38.6 bits (91), Expect = 0.003
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
Query: 188 NETPLHFAAKFG---SVECVKRLI--GCAKIQTSVRNKEGKTPL 226
+ET LH A + + L+ G A + + +NK+ TPL
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKG-ANV--NEKNKDFMTPL 251
Score = 34.8 bits (81), Expect = 0.042
Identities = 6/67 (8%), Positives = 16/67 (23%), Gaps = 21/67 (31%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI-GCAKIQTSVRN------------------- 219
+ ++ + A E + G + +Q +
Sbjct: 150 PTLVNCH-GKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQP 208
Query: 220 KEGKTPL 226
+ +T L
Sbjct: 209 QSHETAL 215
Score = 34.0 bits (79), Expect = 0.082
Identities = 6/48 (12%), Positives = 11/48 (22%), Gaps = 3/48 (6%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+ + L A + + L + TPL
Sbjct: 17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHA--SDGRKSTPL 62
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 44.3 bits (106), Expect = 2e-05
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 176 LDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
LD N D N TPL A G + +L+ K+ ++ EG T L
Sbjct: 24 LDFLRNYRDS-YNRTPLMVACMLGMENAIDKLVENFDKL--EDKDIEGSTAL 72
Score = 41.6 bits (99), Expect = 1e-04
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
VNT D +TPL ++ FG E L+ A + RN EG+TPL
Sbjct: 94 VNTKDF-SGKTPLMWSIIFGYSEMSYFLLEHGANVN--DRNLEGETPL 138
Score = 41.6 bits (99), Expect = 1e-04
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
VN + ETPL A+K+G E VK+L+ G A I S R+ G T
Sbjct: 127 VNDRNL-EGETPLIVASKYGRSEIVKKLLELG-ADI--SARDLTGLTAE 171
Score = 40.1 bits (95), Expect = 4e-04
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
+ D T L +A K + ++L+ G + + + ++ GKTPL
Sbjct: 61 LEDKDIE-GSTALIWAVKNNRLGIAEKLLSKG-SNV--NTKDFSGKTPL 105
Score = 33.9 bits (79), Expect = 0.048
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 189 ETPLHFAAKFGSVECVKRLI 208
T A FG E +K
Sbjct: 168 LTAEASARIFGRQEVIKIFT 187
Score = 33.1 bits (77), Expect = 0.090
Identities = 6/38 (15%), Positives = 12/38 (31%), Gaps = 7/38 (18%)
Query: 189 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
E + + + L + R+ +TPL
Sbjct: 9 EIVEKIKDEKSINQNLDFLR-------NYRDSYNRTPL 39
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 43.1 bits (103), Expect = 2e-05
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 189 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
TPLH AA+ G +E VK L+ A + + ++K G+TPL
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPL 39
Score = 42.7 bits (102), Expect = 2e-05
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
VN DK TPLH AA+ G +E VK L+ A + + ++K G+TPL
Sbjct: 61 VNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPL 105
Score = 41.9 bits (100), Expect = 4e-05
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
VN DK TPLH AA+ G +E VK L+ A + + ++K G+TPL
Sbjct: 28 VNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPL 72
Score = 35.0 bits (82), Expect = 0.011
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI 208
VN DK TPLH AA+ G +E VK L+
Sbjct: 94 VNAKDKN-GRTPLHLAARNGHLEVVKLLL 121
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 44.4 bits (106), Expect = 2e-05
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
+N ++ L AA+ G ++ VK L+ G I +N G T L
Sbjct: 99 LNKHNRY-GGNALIPAAEKGHIDNVKLLLEDGREDI--DFQNDFGYTAL 144
Score = 44.0 bits (105), Expect = 3e-05
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
+N + ++++P +A G E + ++ A + N+ G L
Sbjct: 65 INLQNS-ISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNAL 110
Score = 39.7 bits (94), Expect = 5e-04
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 189 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
L A + + + + L ++ + EG TPL
Sbjct: 7 GALLEAANQRDTKKVKEILQDTTYQVDE--VDTEGNTPL 43
Score = 39.7 bits (94), Expect = 6e-04
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
V+ D TPL+ A +E K LI A I ++N +P
Sbjct: 32 VDEVDT-EGNTPLNIAVHNNDIEIAKALIDRGADIN--LQNSISDSPY 76
Score = 34.7 bits (81), Expect = 0.027
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 9/53 (16%)
Query: 180 VNTPDKALNETPLHFAAKF-----GSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
++ + T L A + VK L+ A S+++ G+T +
Sbjct: 133 IDFQND-FGYTALIEAVGLREGNQLYQDIVKLLMENGADQ--SIKDNSGRTAM 182
Score = 34.7 bits (81), Expect = 0.030
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI 208
+ D + T + +A + G E K L
Sbjct: 171 QSIKDNS-GRTAMDYANQKGYTEISKILA 198
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 45.0 bits (106), Expect = 2e-05
Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 29/108 (26%)
Query: 131 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNET 190
ALH++ ++V+ ++ ++ N ++ + T
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGN-----------------------LDKQTGKGS-T 207
Query: 191 PLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDVCFKMPSVD 236
LH+ + EC+K L+ + N+ G+TPLD+ ++
Sbjct: 208 ALHYCCLTDNAECLKLLLRGKA---SIEIANESGETPLDIAKRLKHEH 252
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 42.3 bits (101), Expect = 2e-05
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
VN DK TPLH AA+ G +E VK L+ A + + ++K G+TPL
Sbjct: 28 VNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPL 72
Score = 41.2 bits (98), Expect = 3e-05
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 190 TPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
TPLH AA+ G +E VK L+ A + + ++K G+TPL
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPL 39
Score = 34.6 bits (81), Expect = 0.007
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 190 TPLHFAAKFGSVECVKRLI 208
TPLH AA+ G +E VK L+
Sbjct: 70 TPLHLAARNGHLEVVKLLL 88
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 44.8 bits (107), Expect = 2e-05
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
N D TPLH A + + LI R +G TPL
Sbjct: 83 ANIQDNM-GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128
Score = 44.4 bits (106), Expect = 2e-05
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 189 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
ET LH AA++ + KRL+ A ++++ G+TPL
Sbjct: 58 ETALHLAARYSRSDAAKRLLEASADA--NIQDNMGRTPL 94
Score = 44.0 bits (105), Expect = 3e-05
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDV 228
+ + ETPL AA+ GS E K L+ A + + + P D+
Sbjct: 183 KDMQNNR-EETPLFLAAREGSYETAKVLLDHF-ANR--DITDHMDRLPRDI 229
Score = 42.8 bits (102), Expect = 8e-05
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
VN D ++ LH+AA +V+ L+ A ++N +TPL
Sbjct: 150 VNAVDDL-GKSALHWAAAVNNVDAAVVLLKNGANK--DMQNNREETPL 194
Score = 41.7 bits (99), Expect = 2e-04
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 189 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
TPL AA+ ++ LI A + + GK+ L
Sbjct: 125 TTPLILAARLAVEGMLEDLINSHADVN--AVDDLGKSAL 161
Score = 33.2 bits (77), Expect = 0.095
Identities = 5/29 (17%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI 208
+ D + P A + + V+ L
Sbjct: 216 RDITDHM-DRLPRDIAQERMHHDIVRLLD 243
Score = 33.2 bits (77), Expect = 0.12
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 18/62 (29%)
Query: 180 VNTPDKALNETPLHFAAKFG-------------SVECVKRLI--GCAKIQTSVRNKEGKT 224
VN TPL A+ G + + I G A + + ++ G+T
Sbjct: 3 VNVRGP-DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQG-ASLH-NQTDRTGET 59
Query: 225 PL 226
L
Sbjct: 60 AL 61
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 44.7 bits (107), Expect = 2e-05
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
N D + TPLH A + + LI R +G TPL
Sbjct: 51 ANIQDN-MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 96
Score = 43.6 bits (104), Expect = 4e-05
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 189 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
ET LH AA++ + KRL+ A ++++ G+TPL
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASADA--NIQDNMGRTPL 62
Score = 43.6 bits (104), Expect = 4e-05
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDV 228
+ + ETPL AA+ GS E K L+ A + + + P D+
Sbjct: 151 KDMQNNR-EETPLFLAAREGSYETAKVLLDHF-ANR--DITDHMDRLPRDI 197
Score = 43.2 bits (103), Expect = 5e-05
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
VN D ++ LH+AA +V+ L+ G A ++N +TPL
Sbjct: 118 VNAVDDL-GKSALHWAAAVNNVDAAVVLLKNG-ANK--DMQNNREETPL 162
Score = 43.2 bits (103), Expect = 6e-05
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 189 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
TPL AA+ ++ LI A + + + GK+ L
Sbjct: 93 TTPLILAARLAVEGMLEDLINSHADV--NAVDDLGKSAL 129
Score = 33.9 bits (79), Expect = 0.061
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI 208
+ D ++ P A + + V+ L
Sbjct: 184 RDITDH-MDRLPRDIAQERMHHDIVRLLD 211
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 44.1 bits (105), Expect = 3e-05
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 187 LNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
L L ++ G + V+R+I S+ N EG T L
Sbjct: 36 LPLALLLDSSLEGEFDLVQRIIYEVDDP--SLPNDEGITAL 74
Score = 41.1 bits (97), Expect = 3e-04
Identities = 5/45 (11%), Positives = 12/45 (26%), Gaps = 5/45 (11%)
Query: 183 PDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
P+ + L + + I +++ N L
Sbjct: 1 PEIT-GQVSLPPGKRTNLRKTGSERIAHGMRVKF---NPLPLALL 41
Score = 40.7 bits (96), Expect = 3e-04
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
+ P+ T LH A G E VK L+ G + + + +G TPL
Sbjct: 63 PSLPNDE-GITALHNAVCAGHTEIVKFLVQFG-VNV--NAADSDGWTPL 107
Score = 40.3 bits (95), Expect = 6e-04
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 190 TPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+ G +C + L G K+ + NK L
Sbjct: 141 ADKCEEMEEGYTQCSQFLYGVQEKMG--IMNKGVIYAL 176
Score = 38.4 bits (90), Expect = 0.002
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDVCF 230
VN D TPLH AA +V+ K L+ A + ++ + +T D C
Sbjct: 96 VNAADSD-GWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCE 145
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 44.2 bits (105), Expect = 4e-05
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
VN D TPL A V L+ A + NK ++ L
Sbjct: 159 VNAMDCD-ENTPLMLAVLARRRRLVAYLMKAGADPT--IYNKSERSAL 203
Score = 43.4 bits (103), Expect = 7e-05
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 189 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
T LH+AA+ ++ VK L+G ++++GKTP+
Sbjct: 280 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI 317
Score = 42.6 bits (101), Expect = 1e-04
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDV 228
+ D+ +TP+ AA+ G +E V LI G A ++ + T +
Sbjct: 306 KDKQDED-GKTPIMLAAQEGRIEVVMYLIQQG-ASVE--AVDATDHTARQL 352
Score = 42.2 bits (100), Expect = 2e-04
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSV--RNKEGKTPL 226
+K + LH AA + ++ K++ + ++ G T L
Sbjct: 192 PTIYNK-SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL 239
Score = 38.8 bits (91), Expect = 0.002
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSV------RNKEGKTPL 226
+ P N T LH+ A S E + LI AK + + + TPL
Sbjct: 119 IIDPRH--NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL 170
Score = 38.4 bits (90), Expect = 0.003
Identities = 9/66 (13%), Positives = 13/66 (19%), Gaps = 2/66 (3%)
Query: 161 YDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNK 220
S D + N + P G+ +I T
Sbjct: 35 TSSQHSLLEASYDGYIKRQRNELQHY-SLYPNPQGYGNGNDFLGDFNHTNLQIPTE-PEP 92
Query: 221 EGKTPL 226
E L
Sbjct: 93 ESPIKL 98
Score = 38.0 bits (89), Expect = 0.004
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 11/57 (19%)
Query: 180 VNTPDKALNETPLHFAAKFGS---VECVKRLIGC-AKI------QTSVRNKEGKTPL 226
+ D+ T L A V K L+ AK+ + +G+T L
Sbjct: 228 IEELDRN-GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL 283
Score = 37.6 bits (88), Expect = 0.005
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 6/48 (12%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
P+ + LH A GS + + I + + +T L
Sbjct: 87 PTEPEPE-SPIKLHTEAA-GSYAITEPITRESVNI---IDPRHNRTVL 129
Score = 32.2 bits (74), Expect = 0.26
Identities = 5/29 (17%), Positives = 6/29 (20%), Gaps = 1/29 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI 208
V D + T A V
Sbjct: 339 VEAVDA-TDHTARQLAQANNHHNIVDIFD 366
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 43.4 bits (103), Expect = 4e-05
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 180 VNTPDKALN--ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+A L AA G +E V++ + S N+EG T L
Sbjct: 11 PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP--SQPNEEGITAL 58
Score = 42.6 bits (101), Expect = 8e-05
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDVC 229
VN+PD TPLH AA L+ A I + +G T + C
Sbjct: 80 VNSPDS-HGWTPLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKC 128
Score = 42.2 bits (100), Expect = 1e-04
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+ P++ T LH A + V LI A + + + G TPL
Sbjct: 47 PSQPNEE-GITALHNAICGANYSIVDFLITAGANV--NSPDSHGWTPL 91
Score = 35.3 bits (82), Expect = 0.022
Identities = 6/50 (12%), Positives = 12/50 (24%), Gaps = 5/50 (10%)
Query: 180 VNTPDKALNETPLHFAAKF--GSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+ + T + G +C L + + N L
Sbjct: 113 IFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMG--LMNSGAVYAL 160
Score = 29.5 bits (67), Expect = 1.5
Identities = 12/49 (24%), Positives = 15/49 (30%), Gaps = 5/49 (10%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKR-LIGCAKIQTSVRNKEGKTPLD 227
V D ET +AA G V R G V+ + K
Sbjct: 181 VLRRDGP-EETDWWWAALHGQEGYVPRNYFGL---FPRVKPQRSKVKHH 225
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 42.7 bits (101), Expect = 5e-05
Identities = 19/154 (12%), Positives = 38/154 (24%), Gaps = 30/154 (19%)
Query: 95 EKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCR--YNALHVSTKAVNPAMTEMLLE--- 149
G D L G Y+ L + ++ L+
Sbjct: 15 MLGTYEDFL--------ELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGA 66
Query: 150 ---IIGNPAFTNLLY-----DSDTPSYIERSDILLDL--YVNTPDKALNETPLHFAAKFG 199
T +D E I L+ + K + +
Sbjct: 67 DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKP-YKIVVFKNIFNY 125
Query: 200 SVECVKR------LIGCAKIQTSVRNKEGKTPLD 227
V+ + + + +Q +++K G T L+
Sbjct: 126 FVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE 159
Score = 40.8 bits (96), Expect = 2e-04
Identities = 20/137 (14%), Positives = 38/137 (27%), Gaps = 32/137 (23%)
Query: 86 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTE 145
++ LI KG AD++ G T+ + + + +
Sbjct: 56 KISMF--LINKG--ADIKSR--TK------EGT--TLFFPLFQGGGNDI---TGTTELCK 98
Query: 146 MLLE------IIGNPAFTNLLY-----DSDTPSYIERSDILLD---LYVNTPDKALNETP 191
+ LE + P + D I ++ L + DK T
Sbjct: 99 IFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKW-GLTA 157
Query: 192 LHFAAKFGSVECVKRLI 208
L F + +K +
Sbjct: 158 LEFVKRCQKPIALKMME 174
Score = 37.3 bits (87), Expect = 0.003
Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 22/117 (18%)
Query: 128 RYNALHVSTKAVNPAMTEMLLE----IIGNPAFTNLLYD----SDTPSYIERSDILLDL- 178
Y + + L E + +N+LYD ++ + + S L++
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65
Query: 179 -YVNTPDKALNETPLHFAAKFG------SVECVKRLI--GCAKIQTSVRNKEGKTPL 226
+ + K T + G + E K + G A I + K K +
Sbjct: 66 ADIKSRTK-EGTTLFFPLFQGGGNDITGTTELCKIFLEKG-ADI--TALYKPYKIVV 118
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 42.3 bits (101), Expect = 6e-05
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 190 TPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
L AA+ G + V+ L+ A + + + G TPL
Sbjct: 16 KKLLEAARAGRDDEVRILMANGADV--NAEDASGWTPL 51
Score = 42.0 bits (100), Expect = 7e-05
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
VN D A TPL AA FG +E V+ L+ G A + + + EG TPL
Sbjct: 73 VNAVDHA-GMTPLRLAALFGHLEIVEVLLKNG-ADV--NANDMEGHTPL 117
Score = 42.0 bits (100), Expect = 7e-05
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Query: 189 ETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDV 228
TPLH AA FG +E V+ L+ G A + + ++K GKT D+
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKNG-ADV--NAQDKFGKTAFDI 152
Score = 42.0 bits (100), Expect = 8e-05
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
VN D + TPLH AA G +E V+ L+ A + + + G TPL
Sbjct: 40 VNAEDAS-GWTPLHLAAFNGHLEIVEVLLKNGADV--NAVDHAGMTPL 84
Score = 33.1 bits (77), Expect = 0.075
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI 208
VN DK +T + G+ + + L
Sbjct: 139 VNAQDK-FGKTAFDISIDNGNEDLAEILQ 166
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 42.9 bits (101), Expect = 6e-05
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
D+ + T LH+A G E V+ L+ + ++ G +PL
Sbjct: 33 ATRTDQ-DSRTALHWACSAGHTEIVEFLLQLGVPVND--KDDAGWSPL 77
Score = 42.2 bits (99), Expect = 1e-04
Identities = 28/184 (15%), Positives = 47/184 (25%), Gaps = 21/184 (11%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMG 239
VN D A +PLH AA G E VK L+ + N+ G TPL +
Sbjct: 66 VNDKDDA-GWSPLHIAASAGXDEIVKALLVKG-AHVNAVNQNGCTPLHYAASKNRHEIAV 123
Query: 240 PLSTKLTPTKVATKSEGTEEGERVFDNKEEAL-LFIKKNKKIRFKSFRNFQDAQNFAYHG 298
L + T + + + + +
Sbjct: 124 MLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183
Query: 299 SCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGN 358
L+ AS + + L +A L+ + +G
Sbjct: 184 RVEEAKFLVTQGASIYIENKEEKTPL----QVAKGGL----------GLILK--RLAEG- 226
Query: 359 LADV 362
+
Sbjct: 227 -EEA 229
Score = 38.3 bits (89), Expect = 0.002
Identities = 6/40 (15%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 188 NETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
N + A E +R++ + + +++ +T L
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLA--TRTDQDSRTAL 44
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 41.6 bits (99), Expect = 6e-05
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
VN D+ TPL+ A G +E V+ L+ G A + + + G TPL
Sbjct: 40 VNAKDE-YGLTPLYLATAHGHLEIVEVLLKNG-ADV--NAVDAIGFTPL 84
Score = 41.2 bits (98), Expect = 7e-05
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
VN D TPLH AA G +E + L+ G A + + ++K GKT
Sbjct: 73 VNAVDAI-GFTPLHLAAFIGHLEIAEVLLKHG-ADV--NAQDKFGKTAF 117
Score = 41.2 bits (98), Expect = 9e-05
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 190 TPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
L AA+ G + V+ L+ A + + +++ G TPL
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADV--NAKDEYGLTPL 51
Score = 34.7 bits (81), Expect = 0.016
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI 208
VN DK +T + G+ + + L
Sbjct: 106 VNAQDK-FGKTAFDISIGNGNEDLAEILQ 133
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 41.0 bits (97), Expect = 7e-05
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 188 NETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
L AA+ G + V+ L+ A + + ++K G TPL
Sbjct: 24 LGKKLLEAARAGQDDEVRILMANGADV--AAKDKNGSTPL 61
Score = 38.3 bits (90), Expect = 5e-04
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDV 228
V DK TPLH AA+ G +E VK L+ G A + ++K GKT D+
Sbjct: 50 VAAKDKN-GSTPLHLAARNGHLEVVKLLLEAG-ADVXA--QDKFGKTAFDI 96
Score = 27.9 bits (63), Expect = 2.2
Identities = 2/33 (6%), Positives = 7/33 (21%), Gaps = 6/33 (18%)
Query: 195 AAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+ L+ + + + L
Sbjct: 1 GSSHHHHHHSSGLVPRGSHM-----GSDLGKKL 28
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 42.6 bits (100), Expect = 2e-04
Identities = 31/224 (13%), Positives = 61/224 (27%), Gaps = 40/224 (17%)
Query: 108 DNPRYL---VSSGDFPTIL---HEGCRYNALHVSTKAVNPAMTEMLLEII----GNPAFT 157
P+ L + + D ++L G + A P + L + +
Sbjct: 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV 190
Query: 158 NLL--YDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKI 213
+ + ++ N T LH+AA + +C+K L+
Sbjct: 191 DFIIQNGGH---------------LDAKAADGN-TALHYAALYNQPDCLKLLLKGRAL-- 232
Query: 214 QTSVRNKEGKTPLDVCFKMPSVDSMGPL-----STKLTPTKVATKSEGTEEGERVFDNKE 268
N+ G+T LD+ K + L T P V + E +
Sbjct: 233 -VGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYSWVISTENLSSDSSLS 291
Query: 269 EALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPAS 312
+ S + + + +L A+
Sbjct: 292 SPSALNSLSSPSALNSTASNS--PGIEGLSNKEMRILMLGLDAA 333
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 41.5 bits (97), Expect = 3e-04
Identities = 8/48 (16%), Positives = 13/48 (27%), Gaps = 2/48 (4%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 226
V N AA+ G + + RL ++ E
Sbjct: 121 VKVIQAE-NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF 167
Score = 37.6 bits (87), Expect = 0.006
Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 2/49 (4%)
Query: 180 VNTPDK-ALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 226
A N AA+ G + + RL T++ E
Sbjct: 154 EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAF 202
Score = 36.5 bits (84), Expect = 0.013
Identities = 14/130 (10%), Positives = 34/130 (26%), Gaps = 12/130 (9%)
Query: 85 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMT 144
L+ ++ + + ++ + +H+ + + V +
Sbjct: 216 NFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSE- 274
Query: 145 EMLLEIIGNPAFTNLLYDSDTPSY------IERSDILLDLYVNTPDKALNETPLHFAAKF 198
+ G NL+ +D + I T N L A +
Sbjct: 275 ----CLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDAN-ELLRLALRL 329
Query: 199 GSVECVKRLI 208
G+ L+
Sbjct: 330 GNQGACALLL 339
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 39.0 bits (90), Expect = 0.002
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDV 228
VN D A PLH A G + G R+ EG+ PL +
Sbjct: 261 VNQADSA-GRGPLHHATILGHTGLACLFLKRGAD---LGARDSEGRDPLTI 307
>1qhk_A RNAse HI, protein (ribonuclease HI); ribonuclease HI N-terminal
domain, hydrolase; NMR {Saccharomyces cerevisiae} SCOP:
d.100.1.2
Length = 47
Score = 31.1 bits (71), Expect = 0.055
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 3 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNF 34
+++ E + +K F +++ A++F
Sbjct: 14 IYNTWNECKNQVDGYGGAIYKKFNSYEQAKSF 45
Score = 31.1 bits (71), Expect = 0.055
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 263 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNF 294
+++ E + +K F +++ A++F
Sbjct: 14 IYNTWNECKNQVDGYGGAIYKKFNSYEQAKSF 45
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU;
2.10A {Homo sapiens}
Length = 53
Score = 30.8 bits (70), Expect = 0.080
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 3 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNF 34
VF E + + RFK F +A F
Sbjct: 16 VFLTWNECRAQVDRFPAARFKKFATEDEAWAF 47
Score = 30.8 bits (70), Expect = 0.080
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 263 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNF 294
VF E + + RFK F +A F
Sbjct: 16 VFLTWNECRAQVDRFPAARFKKFATEDEAWAF 47
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown
function ATU1810, ontario centre for ST proteomics,
OCSP; NMR {Agrobacterium tumefaciens str}
Length = 106
Score = 31.2 bits (71), Expect = 0.17
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 33/80 (41%)
Query: 238 MGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKN-----------KKIRFKSFR 286
MG S+ +V F+ +E+A + ++ + S+
Sbjct: 42 MGYTSSSDMKQQVKLT----------FETQEQAEAYAQRKGIEYRVILPKEATRKVVSY- 90
Query: 287 NFQDAQNFAY-------HGS 299
NF + HGS
Sbjct: 91 ----TDNFRFNRTQPWTHGS 106
Score = 30.8 bits (70), Expect = 0.24
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 23/54 (42%)
Query: 4 FDNKEEALLFIKKN-----------KKIRFKSFRNFQDAQNFAY-------HGS 39
F+ +E+A + ++ + S+ NF + HGS
Sbjct: 58 FETQEQAEAYAQRKGIEYRVILPKEATRKVVSY-----TDNFRFNRTQPWTHGS 106
>2lju_A Putative oxidoreductase; structural genomics, seattle structural
GENO center for infectious disease, ssgcid; NMR
{Ehrlichia chaffeensis}
Length = 108
Score = 29.3 bits (66), Expect = 0.68
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 16/44 (36%)
Query: 4 FDNKEEALLFIKKN-----------KKIRFKSFRNFQDAQNFAY 36
F +E A+ + + + I KS+ A NF
Sbjct: 66 FTTRELAIAYAVAHKIDYTVLQDNPRTIVPKSY-----ADNFTK 104
Score = 29.3 bits (66), Expect = 0.68
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 16/44 (36%)
Query: 264 FDNKEEALLFIKKN-----------KKIRFKSFRNFQDAQNFAY 296
F +E A+ + + + I KS+ A NF
Sbjct: 66 FTTRELAIAYAVAHKIDYTVLQDNPRTIVPKSY-----ADNFTK 104
>1tu5_A Copper amine oxidase, liver isozyme; oxidoreductase, quinoenzyme,
TPQ; HET: TPQ NAG NDG; 2.37A {Bos taurus} PDB: 2pnc_A*
3ala_A* 2y73_A* 1pu4_A* 1us1_A* 2y74_A* 2c10_A* 2c11_A*
Length = 746
Score = 28.7 bits (63), Expect = 4.5
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 52 SPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEK---GNLADVRKL-VW 107
++ PS P ++ F L +EL + + + +L D +
Sbjct: 16 CHPSLPPRCPSRSPSDQPWTHPDQSQLFADLSREELTTVMSFLTQQLGPDLVDAAQARPS 75
Query: 108 DNPRYLVS 115
DN + V
Sbjct: 76 DNCVFSVE 83
Score = 28.7 bits (63), Expect = 4.5
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 312 SPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEK---GNLADVRKL-VW 367
++ PS P ++ F L +EL + + + +L D +
Sbjct: 16 CHPSLPPRCPSRSPSDQPWTHPDQSQLFADLSREELTTVMSFLTQQLGPDLVDAAQARPS 75
Query: 368 DNPRYLVS 375
DN + V
Sbjct: 76 DNCVFSVE 83
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein
complex; 1.50A {Escherichia coli} SCOP: b.68.4.1
c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Length = 415
Score = 27.8 bits (62), Expect = 6.0
Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 10/80 (12%)
Query: 320 DPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWD----------N 369
D + LPQ A +P+ + +L +V + +V + D
Sbjct: 51 DRARLPQQPGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ 110
Query: 370 PRYLVSSGDFPTILHVVCSR 389
Y V+ H
Sbjct: 111 NSYKVNKQWLRYAGHTASDE 130
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.374
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,782,391
Number of extensions: 334668
Number of successful extensions: 1180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1036
Number of HSP's successfully gapped: 294
Length of query: 399
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 303
Effective length of database: 4,021,377
Effective search space: 1218477231
Effective search space used: 1218477231
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (25.8 bits)