RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1036
(399 letters)
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 52.4 bits (124), Expect = 3e-08
Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 16/121 (13%)
Query: 121 TILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDI------ 174
TILH + + + A + ++ I+ ++ S +
Sbjct: 179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI 238
Query: 175 --------LLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
++ +N D +T L+ AA+ G++ V L+ + NK G P+
Sbjct: 239 LENLDLKWIIANMLNAQDSN-GDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPV 296
Query: 227 D 227
D
Sbjct: 297 D 297
Score = 39.6 bits (91), Expect = 3e-04
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 151 IGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLI 208
+ +F +LL + + + L +N P TPLH+ ++E VK L+
Sbjct: 76 QQHVSFDSLLQE------VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV 127
Score = 26.9 bits (58), Expect = 4.7
Identities = 18/111 (16%), Positives = 32/111 (28%), Gaps = 11/111 (9%)
Query: 96 KGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA 155
G A + + ++V + P + + + ++ E L
Sbjct: 191 TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN 250
Query: 156 FTNLL-YDSDTP-------SYIERSDILLDLY--VNTPDKALNETPLHFAA 196
N + DT I D LLD +K+ P+ F A
Sbjct: 251 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKS-GLRPVDFGA 300
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human
(Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 50.7 bits (120), Expect = 9e-08
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 13/112 (11%)
Query: 129 YNALHVSTKAVNPAMTEMLLE----------IIGNPAFTNLLYDSDTPSYIERSDILLDL 178
AL + + + + ++LL+ +G A + L SD + +LLD
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208
Query: 179 --YVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
VN + +TPL A + + V+RL+ I+ + + +GKT L +
Sbjct: 209 GADVNVRGER-GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 259
Score = 39.2 bits (90), Expect = 6e-04
Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 17/125 (13%)
Query: 94 IEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGN 153
EKG++ ++ L+ D V++ D + + A+T +LL+ +
Sbjct: 156 AEKGHVEVLKILL-DEMGADVNACDNMGRNALIHALLSSD---DSDVEAITHLLLDHGAD 211
Query: 154 PAFTNLLYDSDTP-------SYIERSDILLDLY---VNTPDKALNETPLHFAAKFGSVEC 203
TP ++ LL+ +N D +T L A + +
Sbjct: 212 VNVRG--ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD-GKTALLLAVELKLKKI 268
Query: 204 VKRLI 208
+ L
Sbjct: 269 AELLC 273
Score = 37.6 bits (86), Expect = 0.002
Identities = 12/57 (21%), Positives = 21/57 (36%)
Query: 189 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKL 245
T L AA+ G VE +K L+ + + G+ L + ++ L
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 205
Score = 36.5 bits (83), Expect = 0.004
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 188 NETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
+ L A + V+ V++L+ A + + G TPL
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANV-NFQEEEGGWTPL 43
Score = 36.5 bits (83), Expect = 0.004
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC 210
VN ++ TPLH A + + V+ L+
Sbjct: 31 VNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 229
Score = 48.7 bits (114), Expect = 3e-07
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
PLH A V+ L+ ++++G+ PL
Sbjct: 2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPL 38
Score = 41.0 bits (94), Expect = 1e-04
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
TPL A G + L+ + + + +G DV
Sbjct: 174 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 212
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
9606]}
Length = 408
Score = 49.6 bits (117), Expect = 3e-07
Identities = 34/238 (14%), Positives = 70/238 (29%), Gaps = 23/238 (9%)
Query: 4 FDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSA 63
+ A L ++++ +H + + LL SP + +
Sbjct: 142 YGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP 201
Query: 64 LPQVSSLAAAEKPSPFKSLKSQELVK-------LRKLIEKGNLADVRKLVWDNPRYLVSS 116
L + E + L ++G+ V L+ + +
Sbjct: 202 LHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 261
Query: 117 GDFPTILHEGCRYNALHVSTKAVNPAMTEMLLE------IIGNPAFTNLLYDSDTPSYIE 170
T LH + + + ++L++ +T L S +
Sbjct: 262 KSGLTPLHLVAQEG---------HVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKL 312
Query: 171 RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
+L L +PLH AA+ G + V L+ + + +G TPL +
Sbjct: 313 VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAI 369
Score = 46.5 bits (109), Expect = 3e-06
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMG 239
N + ETPLH AA+ G E K L+ K + + + K+ +TPL ++ + +
Sbjct: 26 PNVSNVK-VETPLHMAARAGHTEVAKYLLQ-NKAKVNAKAKDDQTPLHCAARIGHTNMVK 83
Query: 240 PL 241
L
Sbjct: 84 LL 85
Score = 45.4 bits (106), Expect = 8e-06
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
TPLH A+ G + VK L+ +V N + +TPL
Sbjct: 2 TPLHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPL 37
Score = 40.0 bits (92), Expect = 4e-04
Identities = 35/203 (17%), Positives = 65/203 (32%), Gaps = 12/203 (5%)
Query: 131 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP-------SYIERSDILLDL--YVN 181
LHV++ + + + LL+ +P +N +TP + E + LL VN
Sbjct: 3 PLHVASFMGHLPIVKNLLQRGASPNVSN--VKVETPLHMAARAGHTEVAKYLLQNKAKVN 60
Query: 182 TPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPL 241
K ++TPLH AA+ G VK L+ + + L
Sbjct: 61 AKAKD-DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119
Query: 242 STKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCG 301
+ + + K + A L ++++ +H +
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLD 179
Query: 302 VNTSLLEAPASPSTVTAADPSAL 324
+ LL SP + + L
Sbjct: 180 IVKLLLPRGGSPHSPAWNGYTPL 202
Score = 33.8 bits (76), Expect = 0.031
Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 13/110 (11%)
Query: 107 WDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP 166
L+ G Y LHV++ N + + LL+ + +P
Sbjct: 277 VPVADVLIKHGVMVDATTRMG-YTPLHVASHYGNIKLVKFLLQHQADVNAKT--KLGYSP 333
Query: 167 -------SYIERSDILLDL--YVNTPDKALNETPLHFAAKFGSVECVKRL 207
+ + +LL N TPL A + G + L
Sbjct: 334 LHQAAQQGHTDIVTLLLKNGASPNEVSSD-GTTPLAIAKRLGYISVTDVL 382
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 48.3 bits (113), Expect = 4e-07
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 189 ETPLHFAAKFGSVECVKRLIGC---AKIQTSVRNKEGKTPLDVCFK 231
+TPLH A G++ V RL+ + + N +TPL +
Sbjct: 4 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI 49
Score = 38.7 bits (88), Expect = 6e-04
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 191 PLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
LH A+ G + V+ L+ + +S++N TPL V
Sbjct: 180 ALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMV 216
Score = 35.2 bits (79), Expect = 0.010
Identities = 5/26 (19%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVK 205
+ + N+TPL A ++ ++
Sbjct: 203 SSLKNCH-NDTPLMVARSRRVIDILR 227
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor
I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId:
10090]}
Length = 255
Score = 48.2 bits (113), Expect = 5e-07
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 189 ETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
+T LH A + L+ ++N G+T L
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTAL 49
Score = 36.2 bits (82), Expect = 0.004
Identities = 17/173 (9%), Positives = 37/173 (21%), Gaps = 14/173 (8%)
Query: 36 YHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIE 95
+ LL+ S + Q + + P+ S + E + + +
Sbjct: 87 RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED 146
Query: 96 KGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA 155
+ P ++ ++ A + L +
Sbjct: 147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS 206
Query: 156 FTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLI 208
LL + TPL A + + L
Sbjct: 207 VLELL-------------LKAGADPTARMYG-GRTPLGSALLRPNPILARLLR 245
Score = 33.1 bits (74), Expect = 0.043
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 188 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
TPLH A + + ++ L+ A + R G+TPL
Sbjct: 192 GRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGS 231
Score = 30.8 bits (68), Expect = 0.22
Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 24/75 (32%)
Query: 129 YNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALN 188
ALH++ + + LL Y++ + L
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHE-----------------------YLDLQND-LG 45
Query: 189 ETPLHFAAKFGSVEC 203
+T LH AA G
Sbjct: 46 QTALHLAAILGEAST 60
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans
[TaxId: 6239]}
Length = 277
Score = 47.8 bits (112), Expect = 7e-07
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 175 LLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC-------AKIQTSVRNKEGKTPLD 227
+ VN D N T LH+ A S E + LI A + + + TPL
Sbjct: 20 ITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM 79
Query: 228 VCFKMPSVDSM 238
+ +
Sbjct: 80 LAVLARRRRLV 90
Score = 45.5 bits (106), Expect = 5e-06
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 188 NETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
+TP+ AA+ G +E V LI A + + T +
Sbjct: 221 GKTPIMLAAQEGRIEVVMYLIQQGASV--EAVDATDHTARQL 260
Score = 37.4 bits (85), Expect = 0.002
Identities = 6/31 (19%), Positives = 7/31 (22%), Gaps = 1/31 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC 210
V D + T A V C
Sbjct: 247 VEAVDAT-DHTARQLAQANNHHNIVDIFDRC 276
Score = 30.9 bits (68), Expect = 0.23
Identities = 5/38 (13%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 189 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
E+P+ + + I + + + +T L
Sbjct: 1 ESPIKLHTEAAGSYAITEPITRESVNI-IDPRHNRTVL 37
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 46.6 bits (109), Expect = 2e-06
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 188 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVC 229
TPLH AA +G E + L+ NK G+T DV
Sbjct: 232 GWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKVGQTAFDVA 272
Score = 35.9 bits (81), Expect = 0.006
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 188 NETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDVC 229
+ A G E V RL+ A I + N +G T L
Sbjct: 40 DGAVFLAACSSGDTEEVLRLLERGADI--NYANVDGLTALHQA 80
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 46.1 bits (108), Expect = 2e-06
Identities = 34/224 (15%), Positives = 72/224 (32%), Gaps = 13/224 (5%)
Query: 90 LRKLIEKGNLADVRKLVWDNPRYLVSSGDFP--TILHEGCRYNALHVSTKAVNPAMTEML 147
+ L G L ++++ + + L + D T LH C + + +
Sbjct: 7 VCNLAYSGKLEELKESILADK-SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN- 64
Query: 148 LEIIGNPAFTNLLYDSDTPSYIERSDILLDL--YVNTPDKALNETPLHFAAKFGSVECVK 205
+ A + L+ + + E LL VN ++ TPLH+AA E
Sbjct: 65 ---DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN-GCTPLHYAASKNRHEIAV 120
Query: 206 RLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFD 265
L+ ++ T + ++ + L T + T +
Sbjct: 121 MLLE-GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDE 179
Query: 266 NKEEAL-LFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLE 308
+ E L + + I ++ + + A G + ++E
Sbjct: 180 ERVEEAKLLVSQGASIYIEN-KEEKTPLQVAKGGLGLILKRMVE 222
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416
{Legionella pneumophila [TaxId: 446]}
Length = 346
Score = 43.3 bits (101), Expect = 3e-05
Identities = 23/183 (12%), Positives = 48/183 (26%), Gaps = 14/183 (7%)
Query: 67 VSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDN--PRYLVSSGDFPTILH 124
+ ++ E + + L + N + L + +L + + +
Sbjct: 4 IHNIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQ 63
Query: 125 EGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDL-----Y 179
C Y A + + G + + T D L L
Sbjct: 64 LLCLYYAHYNRNAKQLWSD----AHKKGIKSEVICFVAAIT-GCSSALDTLCLLLTSDEI 118
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDVCFKMPSVDSM 238
V A N AA+ G + + RL ++ E + + + +
Sbjct: 119 VKVIQ-AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVL 177
Query: 239 GPL 241
L
Sbjct: 178 NRL 180
Score = 36.8 bits (84), Expect = 0.004
Identities = 15/127 (11%), Positives = 29/127 (22%), Gaps = 20/127 (15%)
Query: 95 EKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP 154
E G + R + + TK+ + G
Sbjct: 232 EYGEKYVNPFIARHVNRL----KEMHDAFKLSNPDGVFDLVTKSEC---------LQGFY 278
Query: 155 AFTNLLYDSDTPSYIERSDILLDLYVNTPDKALN------ETPLHFAAKFGSVECVKRLI 208
NL+ +D ++ LL + L A + G+ L+
Sbjct: 279 MLRNLIRRNDE-VLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 337
Query: 209 GCAKIQT 215
+
Sbjct: 338 SIPSVLA 344
Score = 31.8 bits (71), Expect = 0.12
Identities = 18/162 (11%), Positives = 46/162 (28%), Gaps = 16/162 (9%)
Query: 91 RKLIEKGNLADVRK-LVWDNPRYLVSSGDFPTILHEGCRYN--ALHVSTKAVNPAMTEML 147
L N+ VR+ L Y ++ + H+ + V+ + + L
Sbjct: 50 IFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTL 109
Query: 148 LEIIGNPAFTNLL-YDSDTPSYI-------ERSDILLDLYVNTPDK---ALNETPLHFAA 196
++ + ++ ++ + + L +L A N AA
Sbjct: 110 CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAA 169
Query: 197 KFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDVCFKMPSVD 236
+ G + + RL + ++ + +
Sbjct: 170 ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN 211
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 221
Score = 42.2 bits (97), Expect = 4e-05
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 189 ETPLHFAAKFGSVECVKRLI---GCAKIQTSVRNKEGKTPLDVCFKMP 233
++ LH A +I + +N +TPL +
Sbjct: 3 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITN 50
Score = 35.3 bits (79), Expect = 0.008
Identities = 5/42 (11%), Positives = 11/42 (26%), Gaps = 1/42 (2%)
Query: 188 NETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLDV 228
+P S ++L + + E + D
Sbjct: 178 GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDT 219
Score = 34.5 bits (77), Expect = 0.015
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 189 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVD 236
T LH A + + V L+ + +G +P + + PS
Sbjct: 146 RTALHLAVDLQNPDLVSLLL-KCGADVNRVTYQGYSPYQLTWGRPSTR 192
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 154
Score = 38.8 bits (89), Expect = 3e-04
Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 22/138 (15%)
Query: 79 FKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFP--TILHEGCRYNALHVST 136
+++K++++ L + G D+ + +++G P T LH R
Sbjct: 11 CEAVKTRDIFGLLQAYADG--VDL------TEKIPLANGHEPDETALHLAVRSVDRT--- 59
Query: 137 KAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALN------ET 190
+ + + L++ GN + + + ++ ET
Sbjct: 60 ---SLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGET 116
Query: 191 PLHFAAKFGSVECVKRLI 208
PL A + C + L
Sbjct: 117 PLDIAKRLKHEHCEELLT 134
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo
sapiens) [TaxId: 9606]}
Length = 156
Score = 37.9 bits (86), Expect = 7e-04
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMP 233
L AA G V+ V+RL+ + N+ GKT L V
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGS 47
Score = 37.1 bits (84), Expect = 0.001
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIG 209
++ D TPL A + G+ + V L G
Sbjct: 126 LHRRDAR-GLTPLELALQRGAQDLVDILQG 154
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 209
Score = 37.8 bits (86), Expect = 0.001
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC 210
+N ET LH AA+F + KRL+
Sbjct: 15 LNATMDKTGETSLHLAARFARADAAKRLLDA 45
Score = 36.7 bits (83), Expect = 0.002
Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 7/89 (7%)
Query: 121 TILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLY- 179
T LH N VN + + L+ + E S LLD +
Sbjct: 125 TALHWAAAVNNTEA----VNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFA 180
Query: 180 -VNTPDKALNETPLHFAAKFGSVECVKRL 207
D + P A++ + V+ L
Sbjct: 181 NREITDHM-DRLPRDVASERLHHDIVRLL 208
Score = 32.1 bits (71), Expect = 0.089
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 188 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
+ETPL AA+ GS E K L+ + + + P DV
Sbjct: 156 DETPLFLAAREGSYEASKALLD-NFANREITDHMDRLPRDV 195
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 118
Score = 36.4 bits (82), Expect = 0.001
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 189 ETPLHFAAKFGSVECVKRLI 208
+ +A K G ++ VK +
Sbjct: 3 DKEFMWALKNGDLDEVKDYV 22
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId:
9606]}
Length = 156
Score = 37.2 bits (84), Expect = 0.001
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 179 YVNTPDKALNETPLHFAAKFGSVECVKRLI 208
V + +T A +G E V +
Sbjct: 125 NVGHRNHK-GDTACDLARLYGRNEVVSLMQ 153
Score = 35.6 bits (80), Expect = 0.004
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMP 233
L AA G +E + L+ + + +N G+T L V
Sbjct: 3 NELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMKLGN 45
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 153
Score = 36.0 bits (81), Expect = 0.002
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 190 TPLHFAAKFGSVECVKRLI 208
L AA+ G + V+ L+
Sbjct: 4 KKLLEAARAGQDDEVRILM 22
Score = 35.2 bits (79), Expect = 0.004
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRL 207
V+T K +T + G+ + + L
Sbjct: 126 VHTQSKF-CKTAFDISIDNGNEDLAEIL 152
>d1qhka_ d.100.1.2 (A:) N-terminal domain of RNase HI {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 33.4 bits (77), Expect = 0.003
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 3 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNF 34
+++ E + +K F +++ A++F
Sbjct: 14 IYNTWNECKNQVDGYGGAIYKKFNSYEQAKSF 45
Score = 33.4 bits (77), Expect = 0.003
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 263 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNF 294
+++ E + +K F +++ A++F
Sbjct: 14 IYNTWNECKNQVDGYGGAIYKKFNSYEQAKSF 45
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 35.3 bits (79), Expect = 0.003
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 188 NETPLHFAAKFGSVECVKRLIGCA 211
P+ A + G + + L A
Sbjct: 102 GRLPVDLAEELGHRDVARYLRAAA 125
Score = 34.9 bits (78), Expect = 0.004
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 188 NETPLHFAAKFGSVECVKRLIGC 210
+ L AA G VE V+ L+
Sbjct: 3 SADWLATAAARGRVEEVRALLEA 25
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 130
Score = 31.2 bits (69), Expect = 0.096
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 9/45 (20%)
Query: 180 VNTPDKALNETP--LHFAAKFGSVECVKRLIGCAKIQTSVRNKEG 222
V + +T + G +C + L V+ K G
Sbjct: 93 VFAMTYSDMQTAADKCEEMEEGYTQCSQFLY-------GVQEKMG 130
Score = 30.0 bits (66), Expect = 0.23
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 190 TPLHFAAKFGSVECVKRLI 208
L ++ G + V+R+I
Sbjct: 3 ALLLDSSLEGEFDLVQRII 21
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.374
Gapped
Lambda K H
0.267 0.0395 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,402,764
Number of extensions: 62855
Number of successful extensions: 249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 57
Length of query: 399
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,213,086
Effective search space: 378482832
Effective search space used: 378482832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.5 bits)