BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10360
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A8B|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Phosphatase Receptor, Type R
Length = 283
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 120/250 (48%), Gaps = 41/250 (16%)
Query: 125 SLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCAD 184
+ I A + G G+EK +IA Q P+ NT++DFW+M+W S VI+MIT L E + EKC
Sbjct: 73 TYINANYIRGYSGKEKAFIATQGPMINTVDDFWQMVWQEDSPVIVMITKLKEKN-EKCVL 131
Query: 185 YLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREK 244
Y P +KR + +G ++ + +
Sbjct: 132 YWP------------------EKRGI------------------YGKVEVLVISVNECDN 155
Query: 245 YVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGP 304
Y I +L +K + + + + H WYT+WP P+ L+ +++ + GR GP
Sbjct: 156 YTIRNLVLK--QGSHTQHVKHYWYTSWPDHKTPDSAQPLLQLMLDVEEDRLASQGR--GP 211
Query: 305 LVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRV 364
+V+HCS G GRTG +A I + + VD +V +R R G V TS+QY F++
Sbjct: 212 VVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRMDRGGMVQTSEQYEFVHHA 271
Query: 365 LNVYASKLTG 374
L +Y S+L+
Sbjct: 272 LCLYESRLSA 281
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 61/96 (63%), Gaps = 4/96 (4%)
Query: 1 VRPDELP-PGTEDKNRYANVIPIPETRVRLCSGGEAASDS-EDYINANYVRGPKGEEKFY 58
V P E+ P KNRY ++P P +RV C + +DS YINANY+RG G+EK +
Sbjct: 33 VDPKEIDIPRHGTKNRYKTILPNPLSRV--CLRPKNVTDSLSTYINANYIRGYSGKEKAF 90
Query: 59 IACQAPLQNTIEDFWRMIWTHQSKVILMITALFENS 94
IA Q P+ NT++DFW+M+W S VI+MIT L E +
Sbjct: 91 IATQGPMINTVDDFWQMVWQEDSPVIVMITKLKEKN 126
>pdb|1NWL|A Chain A, Crystal Structure Of The Ptp1b Complexed With
Sp7343-Sp7964, A Ptyr Mimetic
pdb|1NWE|A Chain A, Ptp1b R47c Modified At C47 With N-[4-(2-{2-[3-(2-Bromo-
Acetylamino)-Propionylamino]-3-Hydroxy-Propionylamino}-
Ethyl)-Phenyl]-Oxalamic Acid
Length = 298
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 109/227 (48%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT+ FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 78 QRSYILTQGPLPNTVGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 135
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 136 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 166
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+HCS G GR+GT
Sbjct: 167 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHCSAGIGRSGT 224
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 225 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 271
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 38 PKNKNRNRYCDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 90
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T+ FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 91 TVGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 144
>pdb|2GP0|A Chain A, Heptp Catalytic Domain (Residues 44-339), S225d Mutant
Length = 309
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 119/246 (48%), Gaps = 41/246 (16%)
Query: 127 IFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYL 186
I A + G G+EK YIA Q P+ NT+ DFW M+W + +I+M+T L E EKC Y
Sbjct: 99 INANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGK-EKCVHYW 157
Query: 187 PPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYV 246
P E +G FQI ++ ++++C +Y Q+T++ +E R
Sbjct: 158 PTEE-----ETYGPFQIRIQ--DMKECPEYT-------------VRQLTIQYQEER---- 193
Query: 247 ISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLV 306
R++ H+ ++ WP P L+ + E + AA GP+V
Sbjct: 194 --------------RDVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAA--HPGPIV 237
Query: 307 IHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLN 366
+HCS G GRTG +A I + + VD+ +V +R R G + T++QY F++ L
Sbjct: 238 VHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHHTLA 297
Query: 367 VYASKL 372
+YA +L
Sbjct: 298 LYAGQL 303
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 70/124 (56%), Gaps = 14/124 (11%)
Query: 1 VRPDELP-PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYI 59
V P++L PG K+RY ++P P++RV C G + + DYINANY+RG G+EK YI
Sbjct: 58 VSPEDLDIPGHASKDRYKTILPNPQSRV--CLGRAQSQEDGDYINANYIRGYDGKEKVYI 115
Query: 60 ACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSG------PKGEEKFYIACQAPLQNT 113
A Q P+ NT+ DFW M+W + +I+M+T L E P EE + P Q
Sbjct: 116 ATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKEKCVHYWPTEEETY-----GPFQIR 170
Query: 114 IEDF 117
I+D
Sbjct: 171 IQDM 174
>pdb|1BZC|A Chain A, Human Ptp1b Catalytic Domain Complexed With Tpi
Length = 321
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 110/227 (48%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 135
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 136 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 166
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+HCS G GR+GT
Sbjct: 167 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHCSAGIGRSGT 224
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ ++R+ R G + T++Q F Y
Sbjct: 225 FCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTAEQLRFSY 271
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 38 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 90
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 91 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 144
>pdb|1BZH|A Chain A, Cyclic Peptide Inhibitor Of Human Ptp1b
Length = 298
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 110/227 (48%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 135
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 136 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 166
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+HCS G GR+GT
Sbjct: 167 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHCSAGIGRSGT 224
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ ++R+ R G + T++Q F Y
Sbjct: 225 FCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTAEQLRFSY 271
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 38 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 90
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 91 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 144
>pdb|2QDC|A Chain A, Crystal Structure Of The Heptp Catalytic Domain D236a
Mutant
Length = 309
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 118/246 (47%), Gaps = 41/246 (16%)
Query: 127 IFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYL 186
I A + G G+EK YIA Q P+ NT+ DFW M+W + +I+M+T L E EKC Y
Sbjct: 99 INANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGK-EKCVHYW 157
Query: 187 PPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYV 246
P E +G FQI ++ ++++C +Y Q+T++ +E R
Sbjct: 158 PTEE-----ETYGPFQIRIQ--DMKECPEYT-------------VRQLTIQYQEER---- 193
Query: 247 ISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLV 306
R + H+ ++ WP P L+ + E + AA GP+V
Sbjct: 194 --------------RSVKHILFSAWPAHQTPESAGPLLRLVAEVEESPETAA--HPGPIV 237
Query: 307 IHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLN 366
+HCS G GRTG +A I + + VD+ +V +R R G + T++QY F++ L
Sbjct: 238 VHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHHTLA 297
Query: 367 VYASKL 372
+YA +L
Sbjct: 298 LYAGQL 303
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 70/124 (56%), Gaps = 14/124 (11%)
Query: 1 VRPDELP-PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYI 59
V P++L PG K+RY ++P P++RV C G + + DYINANY+RG G+EK YI
Sbjct: 58 VSPEDLDIPGHASKDRYKTILPNPQSRV--CLGRAQSQEDGDYINANYIRGYDGKEKVYI 115
Query: 60 ACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSG------PKGEEKFYIACQAPLQNT 113
A Q P+ NT+ DFW M+W + +I+M+T L E P EE + P Q
Sbjct: 116 ATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKEKCVHYWPTEEETY-----GPFQIR 170
Query: 114 IEDF 117
I+D
Sbjct: 171 IQDM 174
>pdb|1ZC0|A Chain A, Crystal Structure Of Human Hematopoietic Tyrosine
Phosphatase (heptp) Catalytic Domain
Length = 309
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 118/246 (47%), Gaps = 41/246 (16%)
Query: 127 IFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYL 186
I A + G G+EK YIA Q P+ NT+ DFW M+W + +I+M+T L E EKC Y
Sbjct: 99 INANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGK-EKCVHYW 157
Query: 187 PPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYV 246
P E +G FQI ++ ++++C +Y Q+T++ +E R
Sbjct: 158 PTEE-----ETYGPFQIRIQ--DMKECPEYT-------------VRQLTIQYQEER---- 193
Query: 247 ISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLV 306
R + H+ ++ WP P L+ + E + AA GP+V
Sbjct: 194 --------------RSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAA--HPGPIV 237
Query: 307 IHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLN 366
+HCS G GRTG +A I + + VD+ +V +R R G + T++QY F++ L
Sbjct: 238 VHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHHTLA 297
Query: 367 VYASKL 372
+YA +L
Sbjct: 298 LYAGQL 303
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 70/124 (56%), Gaps = 14/124 (11%)
Query: 1 VRPDELP-PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYI 59
V P++L PG K+RY ++P P++RV C G + + DYINANY+RG G+EK YI
Sbjct: 58 VSPEDLDIPGHASKDRYKTILPNPQSRV--CLGRAQSQEDGDYINANYIRGYDGKEKVYI 115
Query: 60 ACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSG------PKGEEKFYIACQAPLQNT 113
A Q P+ NT+ DFW M+W + +I+M+T L E P EE + P Q
Sbjct: 116 ATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKEKCVHYWPTEEETY-----GPFQIR 170
Query: 114 IEDF 117
I+D
Sbjct: 171 IQDM 174
>pdb|3O4S|A Chain A, Crystal Structure Of Heptp With A Closed Wpd Loop And An
Ordered E- Loop
pdb|3O4T|A Chain A, Crystal Structure Of Heptp With An Open Wpd Loop And
Partially Depleted Active Site
pdb|3O4U|A Chain A, Crystal Structure Of Heptp With An Atypically Open Wpd
Loop
Length = 308
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 118/246 (47%), Gaps = 41/246 (16%)
Query: 127 IFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYL 186
I A + G G+EK YIA Q P+ NT+ DFW M+W + +I+M+T L E EKC Y
Sbjct: 98 INANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGK-EKCVHYW 156
Query: 187 PPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYV 246
P E +G FQI ++ ++++C +Y Q+T++ +E R
Sbjct: 157 PTEE-----ETYGPFQIRIQ--DMKECPEYT-------------VRQLTIQYQEER---- 192
Query: 247 ISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLV 306
R + H+ ++ WP P L+ + E + AA GP+V
Sbjct: 193 --------------RSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAA--HPGPIV 236
Query: 307 IHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLN 366
+HCS G GRTG +A I + + VD+ +V +R R G + T++QY F++ L
Sbjct: 237 VHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHHTLA 296
Query: 367 VYASKL 372
+YA +L
Sbjct: 297 LYAGQL 302
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 70/124 (56%), Gaps = 14/124 (11%)
Query: 1 VRPDELP-PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYI 59
V P++L PG K+RY ++P P++RV C G + + DYINANY+RG G+EK YI
Sbjct: 57 VSPEDLDIPGHASKDRYKTILPNPQSRV--CLGRAQSQEDGDYINANYIRGYDGKEKVYI 114
Query: 60 ACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSG------PKGEEKFYIACQAPLQNT 113
A Q P+ NT+ DFW M+W + +I+M+T L E P EE + P Q
Sbjct: 115 ATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKEKCVHYWPTEEETY-----GPFQIR 169
Query: 114 IEDF 117
I+D
Sbjct: 170 IQDM 173
>pdb|2A3K|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Ptpn7 (Heptp, Hematopoietic Protein
Tyrosine Phosphatase)
Length = 296
Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 118/246 (47%), Gaps = 41/246 (16%)
Query: 127 IFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYL 186
I A + G G+EK YIA Q P+ NT+ DFW M+W + +I+M+T L E EKC Y
Sbjct: 88 INANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGK-EKCVHYW 146
Query: 187 PPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYV 246
P E +G FQI ++ ++++C +Y Q+T++ +E R
Sbjct: 147 PTEE-----ETYGPFQIRIQ--DMKECPEYT-------------VRQLTIQYQEER---- 182
Query: 247 ISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLV 306
R + H+ ++ WP P L+ + E + AA GP+V
Sbjct: 183 --------------RSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAA--HPGPIV 226
Query: 307 IHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLN 366
+HCS G GRTG +A I + + VD+ +V +R R G + T++QY F++ L
Sbjct: 227 VHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHHTLA 286
Query: 367 VYASKL 372
+YA +L
Sbjct: 287 LYAGQL 292
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 70/124 (56%), Gaps = 14/124 (11%)
Query: 1 VRPDELP-PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYI 59
V P++L PG K+RY ++P P++RV C G + + DYINANY+RG G+EK YI
Sbjct: 47 VSPEDLDIPGHASKDRYKTILPNPQSRV--CLGRAQSQEDGDYINANYIRGYDGKEKVYI 104
Query: 60 ACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSG------PKGEEKFYIACQAPLQNT 113
A Q P+ NT+ DFW M+W + +I+M+T L E P EE + P Q
Sbjct: 105 ATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKEKCVHYWPTEEETY-----GPFQIR 159
Query: 114 IEDF 117
I+D
Sbjct: 160 IQDM 163
>pdb|2BIJ|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase Ptpn5 (step, Striatum Enriched Enriched
Phosphatase)
Length = 305
Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 115/249 (46%), Gaps = 40/249 (16%)
Query: 125 SLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCAD 184
S I A + G GEEK YIA Q P+ +T+ DFWRM+W + +I+MIT + E +
Sbjct: 94 SYINANYIRGYGGEEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIEEMN------ 147
Query: 185 YLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREK 244
EKC +Y P +V + +IT++K E
Sbjct: 148 --------------------------EKCTEYWPEEQV-----AYDGVEITVQKVIHTED 176
Query: 245 YVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGP 304
Y + + +K+ R L H W+T+WP P+ L+ + E + G P
Sbjct: 177 YRLRLISLKSGTEE--RGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ-QEGPHCAP 233
Query: 305 LVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRV 364
+++HCS G GRTG +A I + VD+ + +RQ R G + T +QY F++ V
Sbjct: 234 IIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGGMIQTCEQYQFVHHV 293
Query: 365 LNVYASKLT 373
+++Y +L+
Sbjct: 294 MSLYEKQLS 302
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 56/89 (62%), Gaps = 9/89 (10%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSED----YINANYVRGPKGEEKFYIACQA 63
PG KNRY ++P P +RV L S D +D YINANY+RG GEEK YIA Q
Sbjct: 62 PGLVRKNRYKTILPNPHSRVCLTS-----PDPDDPLSSYINANYIRGYGGEEKVYIATQG 116
Query: 64 PLQNTIEDFWRMIWTHQSKVILMITALFE 92
P+ +T+ DFWRM+W + +I+MIT + E
Sbjct: 117 PIVSTVADFWRMVWQEHTPIIVMITNIEE 145
>pdb|2NT7|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2NTA|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
Length = 299
Score = 124 bits (311), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 109/227 (48%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 135
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 136 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 166
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+HCS G GR+GT
Sbjct: 167 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHCSAGIGRSGT 224
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ ++R+ R G + T+ Q F Y
Sbjct: 225 FCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTADQLRFSY 271
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 38 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 90
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 91 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 144
>pdb|1G7F|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177496
Length = 298
Score = 124 bits (311), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 109/227 (48%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 135
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 136 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 166
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+HCS G GR+GT
Sbjct: 167 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHCSAGIGRSGT 224
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ ++R+ R G + T+ Q F Y
Sbjct: 225 FCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTADQLRFSY 271
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 38 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 90
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 91 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 144
>pdb|1JLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase Ptp-SlBR7
Length = 297
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 121/249 (48%), Gaps = 41/249 (16%)
Query: 125 SLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCAD 184
+ I A + G G+EK +IA Q P+ NT+ DFW+M+W S VI+MIT L E + EKC
Sbjct: 86 TYINANYIRGYSGKEKAFIATQGPMINTVNDFWQMVWQEDSPVIVMITKLKEKN-EKCVL 144
Query: 185 YLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREK 244
Y P + ++G ++ + + V +C +
Sbjct: 145 YWP-----EKRGIYGKVEVLV--------------TGVTEC-----------------DN 168
Query: 245 YVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGP 304
Y I +L +K + + + + H WYT+WP P+ L+ +++ + GR GP
Sbjct: 169 YTIRNLVLK--QGSHTQHVKHYWYTSWPDHKTPDSAQPLLQLMLDVEEDRLASEGR--GP 224
Query: 305 LVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRV 364
+V+HCS G GRTG +A I + + VD +V +R R G V TS+QY F++
Sbjct: 225 VVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRVDRGGMVQTSEQYEFVHHA 284
Query: 365 LNVYASKLT 373
L ++ S+L+
Sbjct: 285 LCLFESRLS 293
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 60/96 (62%), Gaps = 4/96 (4%)
Query: 1 VRPDELP-PGTEDKNRYANVIPIPETRVRLCSGGEAASDS-EDYINANYVRGPKGEEKFY 58
V P E+ P KNRY ++P P +RV C + +DS YINANY+RG G+EK +
Sbjct: 46 VDPKEIDIPRHGTKNRYKTILPNPLSRV--CLRPKNITDSLSTYINANYIRGYSGKEKAF 103
Query: 59 IACQAPLQNTIEDFWRMIWTHQSKVILMITALFENS 94
IA Q P+ NT+ DFW+M+W S VI+MIT L E +
Sbjct: 104 IATQGPMINTVNDFWQMVWQEDSPVIVMITKLKEKN 139
>pdb|1C86|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
(R47v, D48n) Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-
Thieno[2,3-C]pyran-3-Carboxylic Acid
Length = 298
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 109/227 (48%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 135
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 136 ED-----------------------------TNLKLTLISEDIKTYYTVRQLELENLTTQ 166
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+HCS G GR+GT
Sbjct: 167 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHCSAGIGRSGT 224
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ ++R+ R G + T+ Q F Y
Sbjct: 225 FCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTADQLRFSY 271
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY NV P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 38 PKNKNRNRYVNVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 90
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 91 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 144
>pdb|1L8G|A Chain A, Crystal Structure Of Ptp1b Complexed With 7-(1,1-dioxo-1h-
Benzo[d]isothiazol-3-yloxymethyl)-2-(oxalyl-amino)-4,7-
Dihydro-5h-thieno[2,3-c]pyran-3-carboxylic Acid
Length = 321
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 109/227 (48%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 135
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 136 ED-----------------------------TNLKLTLISEDIKTYYTVRQLELENLTTQ 166
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+HCS G GR+GT
Sbjct: 167 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHCSAGIGRSGT 224
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ ++R+ R G + T+ Q F Y
Sbjct: 225 FCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTADQLRFSY 271
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 38 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 90
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 91 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 144
>pdb|1ECV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 5-Iodo-2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C83|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 6-(Oxalyl-Amino)-1h-Indole-5-Carboxylic
Acid
pdb|1C84|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 3-(Oxalyl-Amino)-Naphthalene-2-Carboxlic
Acid
pdb|1C85|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C87|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-Thieno[2,3-
C]pyran-3-Carboxylic Acid
pdb|1C88|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-4,5,6,7-Tetrahydro-
Thieno[2,3-C]pyridine-3-Carboxylic Acid
Length = 298
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 109/227 (48%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 135
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 136 ED-----------------------------TNLKLTLISEDIKTYYTVRQLELENLTTQ 166
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+HCS G GR+GT
Sbjct: 167 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHCSAGIGRSGT 224
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ ++R+ R G + T+ Q F Y
Sbjct: 225 FCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTADQLRFSY 271
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 38 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 90
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 91 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 144
>pdb|4I8N|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Inhibitor
[(4-{(2s)-2-(1,3-Benzoxazol-2-Yl)-2-[(4-Fluorophenyl)
Sulfamoyl]ethyl}phenyl)amino](Oxo)acetic Acid
Length = 354
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 108/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 112 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 169
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 170 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 200
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+HCS G GR+GT
Sbjct: 201 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHCSAGIGRSGT 258
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 259 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 305
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 72 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 124
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 125 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 178
>pdb|2CMA|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|3A5J|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 327
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 108/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 84 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 141
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 142 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 172
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+HCS G GR+GT
Sbjct: 173 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHCSAGIGRSGT 230
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 231 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 277
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 44 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 96
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 97 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 150
>pdb|1NL9|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 12 Using A Linked-Fragment Strategy
pdb|1NNY|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 23 Using A Linked-fragment Strategy
pdb|1NO6|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 5 Using A Linked-fragment Strategy
pdb|1NZ7|A Chain A, Potent, Selective Inhibitors Of Protein Tyrosine
Phosphatase 1b Using A Second Phosphotyrosine Binding
Site, Complexed With Compound 19.
pdb|1ONY|A Chain A, Oxalyl-aryl-amino Benzoic Acid Inhibitors Of Ptp1b,
Compound 17
pdb|1ONZ|A Chain A, Oxalyl-Aryl-Amino Benzoic Acid Inhibitors Of Ptp1b,
Compound 8b
pdb|1OEM|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To A
Sulfenyl-Amide Bond
pdb|1OES|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1PXH|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b With
Potent And Selective Bidentate Inhibitor Compound 2
pdb|1PH0|A Chain A, Non-Carboxylic Acid-Containing Inhibitor Of Ptp1b
Targeting The Second Phosphotyrosine Site
pdb|1PYN|A Chain A, Dual-Site Potent, Selective Protein Tyrosine Phosphatase
1b Inhibitor Using A Linked Fragment Strategy And A
Malonate Head On The First Site
pdb|1Q1M|A Chain A, A Highly Efficient Approach To A Selective And Cell Active
Ptp1b Inhibitors
pdb|1QXK|A Chain A, Monoacid-Based, Cell Permeable, Selective Inhibitors Of
Protein Tyrosine Phosphatase 1b
pdb|1SUG|A Chain A, 1.95 A Structure Of Apo Protein Tyrosine Phosphatase 1b
pdb|1XBO|A Chain A, Ptp1b Complexed With Isoxazole Carboxylic Acid
pdb|1WAX|A Chain A, Protein Tyrosine Phosphatase 1b With Active Site Inhibitor
pdb|2BGD|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2BGE|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2CM7|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CM8|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNF|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNG|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNH|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNI|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2HNP|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2HNQ|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2VEU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEV|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEW|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEX|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEY|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|3D9C|A Chain A, Crystal Structure Ptp1b Complex With Aryl Seleninic Acid
pdb|3EAX|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
Compound Lzp-6
pdb|3EB1|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
Inhibitor Lzp-25
pdb|3I7Z|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog
Fo First Catalytic Step
pdb|3I80|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog
Fo Second Catalytic Step
Length = 321
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 108/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 135
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 136 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 166
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+HCS G GR+GT
Sbjct: 167 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHCSAGIGRSGT 224
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 225 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 271
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 38 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 90
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 91 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 144
>pdb|3CWE|A Chain A, Ptp1b In Complex With A Phosphonic Acid Inhibitor
Length = 290
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 108/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 85 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 142
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 143 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 173
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+HCS G GR+GT
Sbjct: 174 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHCSAGIGRSGT 231
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 232 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 278
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 45 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 97
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 98 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 151
>pdb|1Q6J|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|1Q6M|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 3
pdb|1Q6N|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 4
pdb|1Q6N|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 4
pdb|1Q6P|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 6
pdb|1Q6P|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 6
pdb|1Q6S|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 9
pdb|1Q6S|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 9
pdb|1Q6T|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 11
pdb|1Q6T|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 11
pdb|2FJN|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|2FJN|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
Length = 310
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 108/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 90 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 147
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 148 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 178
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+HCS G GR+GT
Sbjct: 179 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHCSAGIGRSGT 236
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 237 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 283
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 50 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 102
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 103 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 156
>pdb|1BZJ|A Chain A, Human Ptp1b Complexed With Tpicooh
Length = 297
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 108/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 77 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 134
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 135 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 165
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+HCS G GR+GT
Sbjct: 166 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHCSAGIGRSGT 223
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 224 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 270
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 37 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 89
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 90 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 143
>pdb|2AZR|A Chain A, Crystal Structure Of Ptp1b With Bicyclic Thiophene
Inhibitor
pdb|2B07|A Chain A, Crystal Structure Of Ptp1b With Tricyclic Thiophene
Inhibitor.
pdb|2H4G|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2H4K|A Chain A, Crystal Structure Of Ptp1b With A Monocyclic Thiophene
Inhibitor
pdb|2HB1|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2QBP|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2QBQ|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBR|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBS|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZMM|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZN7|A Chain A, Crystal Structures Of Ptp1b-Inhibitor Complexes
Length = 299
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 108/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 135
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 136 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 166
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+HCS G GR+GT
Sbjct: 167 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHCSAGIGRSGT 224
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 225 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 271
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 38 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 90
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 91 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 144
>pdb|1LQF|A Chain A, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|B Chain B, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|C Chain C, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|D Chain D, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
Length = 295
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 108/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 90 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 147
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 148 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 178
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+HCS G GR+GT
Sbjct: 179 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHCSAGIGRSGT 236
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 237 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 283
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 50 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 102
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 103 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 156
>pdb|2FJM|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|2FJM|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
Length = 310
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 108/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 90 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSVKCAQYWPQKE--EKEMIF 147
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 148 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 178
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+HCS G GR+GT
Sbjct: 179 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHCSAGIGRSGT 236
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 237 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 283
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 50 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 102
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 103 TCGHFWEMVWEQKSRGVVMLNRVMEKGSVKCAQYWPQKEEKEMIFEDTNLKLTL 156
>pdb|2F6F|A Chain A, The Structure Of The S295f Mutant Of Human Ptp1b
Length = 302
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 108/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 82 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 139
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 140 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 170
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+HCS G GR+GT
Sbjct: 171 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHCSAGIGRSGT 228
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 229 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 275
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 42 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 94
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 95 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 148
>pdb|1G7G|A Chain A, Human Ptp1b Catalytic Domain Complexes With Pnu179326
pdb|1JF7|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1JF7|B Chain B, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1KAK|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1KAV|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1T48|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T49|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T4J|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|2F6T|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6V|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6W|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Y|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Z|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F70|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F71|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
Length = 298
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 108/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 135
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 136 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 166
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+HCS G GR+GT
Sbjct: 167 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHCSAGIGRSGT 224
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 225 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 271
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 38 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 90
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 91 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 144
>pdb|2CM2|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (P212121)
pdb|2CM3|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CM3|B Chain B, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CMB|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CMC|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNE|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
Length = 304
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 108/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 84 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 141
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 142 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 172
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+HCS G GR+GT
Sbjct: 173 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHCSAGIGRSGT 230
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 231 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 277
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 44 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 96
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 97 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 150
>pdb|3SME|A Chain A, Structure Of Ptp1b Inactivated By H2o2BICARBONATE
Length = 300
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 108/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 80 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 137
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 138 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 168
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+HCS G GR+GT
Sbjct: 169 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHCSAGIGRSGT 226
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 227 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 273
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 40 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 92
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 93 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 146
>pdb|2QDM|A Chain A, Crystal Structure Of The Heptp Catalytic Domain
C270sD236AQ314A Mutant
Length = 309
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 118/246 (47%), Gaps = 41/246 (16%)
Query: 127 IFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYL 186
I A + G G+EK YIA Q P+ NT+ DFW M+W + +I+M+T L E EKC Y
Sbjct: 99 INANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGK-EKCVHYW 157
Query: 187 PPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYV 246
P E +G FQI ++ ++++C +Y Q+T++ +E R
Sbjct: 158 PTEE-----ETYGPFQIRIQ--DMKECPEYT-------------VRQLTIQYQEER---- 193
Query: 247 ISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLV 306
R + H+ ++ WP P L+ + E + AA GP+V
Sbjct: 194 --------------RSVKHILFSAWPAHQTPESAGPLLRLVAEVEESPETAA--HPGPIV 237
Query: 307 IHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLN 366
+H S G GRTG +A I + + VD+ +V +R R G +AT++QY F++ L
Sbjct: 238 VHSSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIATAEQYQFLHHTLA 297
Query: 367 VYASKL 372
+YA +L
Sbjct: 298 LYAGQL 303
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 70/124 (56%), Gaps = 14/124 (11%)
Query: 1 VRPDELP-PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYI 59
V P++L PG K+RY ++P P++RV C G + + DYINANY+RG G+EK YI
Sbjct: 58 VSPEDLDIPGHASKDRYKTILPNPQSRV--CLGRAQSQEDGDYINANYIRGYDGKEKVYI 115
Query: 60 ACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSG------PKGEEKFYIACQAPLQNT 113
A Q P+ NT+ DFW M+W + +I+M+T L E P EE + P Q
Sbjct: 116 ATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKEKCVHYWPTEEETY-----GPFQIR 170
Query: 114 IEDF 117
I+D
Sbjct: 171 IQDM 174
>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1
Length = 532
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 112/233 (48%), Gaps = 40/233 (17%)
Query: 134 GPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLD 193
GP K YIA Q L+ T+ DFW+M W S+VI+M T E KC Y P +
Sbjct: 313 GPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPE---VG 369
Query: 194 CHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIK 253
R +G + +T +C G+ T +Y + +LQ+
Sbjct: 370 MQRAYGPYSVT-------------------NC----GEHDTT--------EYKLRTLQVS 398
Query: 254 NLET-NLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPG 312
L+ +L RE+ H Y +WP GVP+E +++FL + + AGP+++HCS G
Sbjct: 399 PLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLP--HAGPIIVHCSAG 456
Query: 313 TGRTGTVLACDILIRHFETSR---SVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
GRTGT++ D+L+ + T +D+ + + +R R+G V T QY FIY
Sbjct: 457 IGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIY 509
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVR----GPKGEEKFYIACQA 63
P + KNRY N++P +RV + G ++ DYINANY++ GP K YIA Q
Sbjct: 268 PENKGKNRYKNILPFDHSRV-ILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQG 326
Query: 64 PLQNTIEDFWRMIWTHQSKVILMITALFE 92
L+ T+ DFW+M W S+VI+M T E
Sbjct: 327 CLEATVNDFWQMAWQENSRVIVMTTREVE 355
>pdb|1A5Y|A Chain A, Protein Tyrosine Phosphatase 1b Cysteinyl-Phosphate
Intermediate
Length = 330
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 110/227 (48%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 135
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 136 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 166
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+H S G GR+GT
Sbjct: 167 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHXSAGIGRSGT 224
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ ++R+ R G +AT++Q F Y
Sbjct: 225 FCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIATAEQLRFSY 271
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 38 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 90
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 91 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 144
>pdb|1GWZ|A Chain A, Crystal Structure Of The Catalytic Domain Of The Protein
Tyrosine Phosphatase Shp-1
Length = 299
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 111/233 (47%), Gaps = 40/233 (17%)
Query: 134 GPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLD 193
GP K YIA Q L+ T+ DFW+M W S+VI+M T E KC Y P +
Sbjct: 71 GPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPE---VG 127
Query: 194 CHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIK 253
R +G P V +C G+ T +Y + +LQ+
Sbjct: 128 MQRAYG-------------------PYSVTNC----GEHDTT--------EYKLRTLQVS 156
Query: 254 NLET-NLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPG 312
L+ +L RE+ H Y +WP GVP+E +++FL + + AGP+++HCS G
Sbjct: 157 PLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLP--HAGPIIVHCSAG 214
Query: 313 TGRTGTVLACDILIRHFETSR---SVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
GRTGT++ D+L+ + T +D+ + + +R R+G V T QY FIY
Sbjct: 215 IGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIY 267
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVR----GPKGEEKFYIACQA 63
P + KNRY N++P +RV + G ++ DYINANY++ GP K YIA Q
Sbjct: 26 PENKGKNRYKNILPFDHSRV-ILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQG 84
Query: 64 PLQNTIEDFWRMIWTHQSKVILMITALFE 92
L+ T+ DFW+M W S+VI+M T E
Sbjct: 85 CLEATVNDFWQMAWQENSRVIVMTTREVE 113
>pdb|4GS0|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
pdb|4GS0|B Chain B, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
Length = 308
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 111/233 (47%), Gaps = 40/233 (17%)
Query: 134 GPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLD 193
GP K YIA Q L+ T+ DFW+M W S+VI+M T E KC Y P +
Sbjct: 93 GPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPE---VG 149
Query: 194 CHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIK 253
R +G P V +C G+ T +Y + +LQ+
Sbjct: 150 MQRAYG-------------------PYSVTNC----GEHDTT--------EYKLRTLQVS 178
Query: 254 NLET-NLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPG 312
L+ +L RE+ H Y +WP GVP+E +++FL + + AGP+++HCS G
Sbjct: 179 PLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLP--HAGPIIVHCSAG 236
Query: 313 TGRTGTVLACDILIRHFETSR---SVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
GRTGT++ D+L+ + T +D+ + + +R R+G V T QY FIY
Sbjct: 237 IGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIY 289
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVR----GPKGEEKFYIACQA 63
P + KNRY N++P +RV + G ++ DYINANY++ GP K YIA Q
Sbjct: 48 PENKGKNRYKNILPFDHSRV-ILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQG 106
Query: 64 PLQNTIEDFWRMIWTHQSKVILMITALFE 92
L+ T+ DFW+M W S+VI+M T E
Sbjct: 107 CLEATVNDFWQMAWQENSRVIVMTTREVE 135
>pdb|3I36|A Chain A, Crystal Structure Of Rat Protein Tyrosine Phosphatase Eta
Catalytic Domain
Length = 342
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 101/223 (45%), Gaps = 37/223 (16%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
+K +IA Q PL NT++DFWRM+W I+M+T E KC +Y P + D
Sbjct: 111 KKDFIATQGPLPNTLKDFWRMVWEKNVYAIVMLTKCVEQGRTKCEEYWPSKQAQD----- 165
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
+GD + + V ++ I +KN++++
Sbjct: 166 ------------------------------YGDITVAMTSEVVLPEWTIRDFVVKNMQSS 195
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
L +T+WP GVP+ LI F R +MK P+++HCS G GRTGT
Sbjct: 196 ESHPLRQFHFTSWPDHGVPDTTDLLINFRYLVRDYMKQIPPE--SPILVHCSAGVGRTGT 253
Query: 319 VLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFI 361
+A D LI E +VDV +VY++R R V T QY F+
Sbjct: 254 FIAIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYVFL 296
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 13 KNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIEDF 72
KNRY NV+P +RV+L + ++DYINANY+ G ++ F IA Q PL NT++DF
Sbjct: 73 KNRYNNVLPYDISRVKLSVQTHS---TDDYINANYMPGYHSKKDF-IATQGPLPNTLKDF 128
Query: 73 WRMIWTHQSKVILMITALFENSGPKGEE 100
WRM+W I+M+T E K EE
Sbjct: 129 WRMVWEKNVYAIVMLTKCVEQGRTKCEE 156
>pdb|2NZ6|A Chain A, Crystal Structure Of The Ptprj Inactivating Mutant C1239s
Length = 316
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 108/234 (46%), Gaps = 38/234 (16%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
+K +IA Q PL NT++DFWRM+W I+M+T E KC +Y P + D
Sbjct: 111 KKDFIATQGPLPNTLKDFWRMVWEKNVYAIIMLTKCVEQGRTKCEEYWPSKQAQD----- 165
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
+GD + + V ++ I +KN++T+
Sbjct: 166 ------------------------------YGDITVAMTSEIVLPEWTIRDFTVKNIQTS 195
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
L +T+WP GVP+ LI F R +MK + P+++H S G GRTGT
Sbjct: 196 ESHPLRQFHFTSWPDHGVPDTTDLLINFRYLVRDYMKQSPPE--SPILVHSSAGVGRTGT 253
Query: 319 VLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYR-VLNVYASK 371
+A D LI E +VDV +VY++R R V T QY F+ + VL++ S+
Sbjct: 254 FIAIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYVFLNQCVLDIVRSQ 307
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 13 KNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIEDF 72
KNRY NV+P +RV+L + ++DYINANY+ G ++ F IA Q PL NT++DF
Sbjct: 73 KNRYNNVLPYDISRVKLSVQTHS---TDDYINANYMPGYHSKKDF-IATQGPLPNTLKDF 128
Query: 73 WRMIWTHQSKVILMITALFENSGPKGEE 100
WRM+W I+M+T E K EE
Sbjct: 129 WRMVWEKNVYAIIMLTKCVEQGRTKCEE 156
>pdb|3D42|A Chain A, Crystal Structure Of Heptp In Complex With A
Monophosphorylated Erk2 Peptide
pdb|3D44|A Chain A, Crystal Structure Of Heptp In Complex With A Dually
Phosphorylated Erk2 Peptide Mimetic
Length = 308
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 117/246 (47%), Gaps = 41/246 (16%)
Query: 127 IFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYL 186
I A + G G+EK YIA Q P+ NT+ DFW M+W + +I+M+T L E EKC Y
Sbjct: 98 INANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGK-EKCVHYW 156
Query: 187 PPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYV 246
P E +G FQI ++ ++++C +Y Q+T++ +E R
Sbjct: 157 PTEE-----ETYGPFQIRIQ--DMKECPEYT-------------VRQLTIQYQEER---- 192
Query: 247 ISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLV 306
R + H+ ++ WP P L+ + E + AA GP+V
Sbjct: 193 --------------RSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAA--HPGPIV 236
Query: 307 IHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLN 366
+H S G GRTG +A I + + VD+ +V +R R G + T++QY F++ L
Sbjct: 237 VHSSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHHTLA 296
Query: 367 VYASKL 372
+YA +L
Sbjct: 297 LYAGQL 302
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 71/124 (57%), Gaps = 14/124 (11%)
Query: 1 VRPDELP-PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYI 59
V P++L PG K+RY +++P P++RV C G + + DYINANY+RG G+EK YI
Sbjct: 57 VSPEDLDIPGHASKDRYKDILPNPQSRV--CLGRAQSQEDGDYINANYIRGYDGKEKVYI 114
Query: 60 ACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSG------PKGEEKFYIACQAPLQNT 113
A Q P+ NT+ DFW M+W + +I+M+T L E P EE + P Q
Sbjct: 115 ATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKEKCVHYWPTEEETY-----GPFQIR 169
Query: 114 IEDF 117
I+D
Sbjct: 170 IQDM 173
>pdb|2HVL|A Chain A, Crystal Structure Of The Heptp Catalytic Domain C270s
Mutant
pdb|2QDP|A Chain A, Crystal Structure Of The Heptp Catalytic Domain C270s
Mutant Crystallized In Ammonium Acetate
Length = 309
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 117/246 (47%), Gaps = 41/246 (16%)
Query: 127 IFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYL 186
I A + G G+EK YIA Q P+ NT+ DFW M+W + +I+M+T L E EKC Y
Sbjct: 99 INANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGK-EKCVHYW 157
Query: 187 PPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYV 246
P E +G FQI ++ ++++C +Y Q+T++ +E R
Sbjct: 158 PTEE-----ETYGPFQIRIQ--DMKECPEYT-------------VRQLTIQYQEER---- 193
Query: 247 ISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLV 306
R + H+ ++ WP P L+ + E + AA GP+V
Sbjct: 194 --------------RSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAA--HPGPIV 237
Query: 307 IHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLN 366
+H S G GRTG +A I + + VD+ +V +R R G + T++QY F++ L
Sbjct: 238 VHSSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHHTLA 297
Query: 367 VYASKL 372
+YA +L
Sbjct: 298 LYAGQL 303
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 70/124 (56%), Gaps = 14/124 (11%)
Query: 1 VRPDELP-PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYI 59
V P++L PG K+RY ++P P++RV C G + + DYINANY+RG G+EK YI
Sbjct: 58 VSPEDLDIPGHASKDRYKTILPNPQSRV--CLGRAQSQEDGDYINANYIRGYDGKEKVYI 115
Query: 60 ACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSG------PKGEEKFYIACQAPLQNT 113
A Q P+ NT+ DFW M+W + +I+M+T L E P EE + P Q
Sbjct: 116 ATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKEKCVHYWPTEEETY-----GPFQIR 170
Query: 114 IEDF 117
I+D
Sbjct: 171 IQDM 174
>pdb|1GFY|A Chain A, Residue 259 Is A Key Determinant Of Substrate Specificity
Of Protein-Tyrosine Phosphatase 1b And Alpha
Length = 298
Score = 120 bits (302), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 135
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 136 ED-----------------------------TNLKLTLISEDIKTYYTVRQLELENLTTQ 166
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+HCS G GR+GT
Sbjct: 167 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHCSAGIGRSGT 224
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ ++R+ R + T+ Q F Y
Sbjct: 225 FCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRCQLIQTADQLRFSY 271
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY NV P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 38 PKNKNRNRYVNVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 90
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 91 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 144
>pdb|2CFV|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Receptor Type J
Length = 316
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 108/234 (46%), Gaps = 38/234 (16%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
+K +IA Q PL NT++DFWRM+W I+M+T E KC +Y P + D
Sbjct: 111 KKDFIATQGPLPNTLKDFWRMVWEKNVYAIIMLTKCVEQGRTKCEEYWPSKQAQD----- 165
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
+GD + + V ++ I +KN++T+
Sbjct: 166 ------------------------------YGDITVAMTSEIVLPEWTIRDFTVKNIQTS 195
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
L +T+ P GVP+ LI F R +MK + P+++HCS G GRTGT
Sbjct: 196 ESHPLRQFHFTSAPDHGVPDTTDLLINFRYLVRDYMKQSPPE--SPILVHCSAGVGRTGT 253
Query: 319 VLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYR-VLNVYASK 371
+A D LI E +VDV +VY++R R V T QY F+ + VL++ S+
Sbjct: 254 FIAIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYVFLNQCVLDIVRSQ 307
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 13 KNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIEDF 72
KNRY NV+P +RV+L + ++DYINANY+ G ++ F IA Q PL NT++DF
Sbjct: 73 KNRYNNVLPYDISRVKLSVQTHS---TDDYINANYMPGYHSKKDF-IATQGPLPNTLKDF 128
Query: 73 WRMIWTHQSKVILMITALFENSGPKGEE 100
WRM+W I+M+T E K EE
Sbjct: 129 WRMVWEKNVYAIIMLTKCVEQGRTKCEE 156
>pdb|2OOQ|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptprt
pdb|2OOQ|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptprt
Length = 286
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 104/226 (46%), Gaps = 40/226 (17%)
Query: 140 KFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFG 199
+ YIA Q P+Q T++DFWRMIW S I+M+T L E KC Y P
Sbjct: 90 RHYIATQGPMQETVKDFWRMIWQENSASIVMVTNLVEVGRVKCVRYWP------------ 137
Query: 200 DFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNL 259
D V+GD ++TL + E +YVI + ++ +
Sbjct: 138 ------------------------DDTEVYGDIKVTLIETEPLAEYVIRTFTVQKKGYHE 173
Query: 260 WRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTV 319
REL +T+WP GVP + L+ F+ +K EAGP+V+HCS G GRTG
Sbjct: 174 IRELRLFHFTSWPDHGVPCYATGLLGFV----RQVKFLNPPEAGPIVVHCSAGAGRTGCF 229
Query: 320 LACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
+A D ++ E VD+ V +R R V T +QY F++ +
Sbjct: 230 IAIDTMLDMAENEGVVDIFNCVRELRAQRVNLVQTEEQYVFVHDAI 275
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 51/82 (62%), Gaps = 5/82 (6%)
Query: 12 DKNRYANVIPIPETRVRLCS-GGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIE 70
+KNRY N+I +RVRL G+ SD YINANY+ G + YIA Q P+Q T++
Sbjct: 49 NKNRYGNIISYDHSRVRLLVLDGDPHSD---YINANYIDGYH-RPRHYIATQGPMQETVK 104
Query: 71 DFWRMIWTHQSKVILMITALFE 92
DFWRMIW S I+M+T L E
Sbjct: 105 DFWRMIWQENSASIVMVTNLVE 126
>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein
Tyrosine Phosphatase Shp-1
Length = 595
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 111/233 (47%), Gaps = 40/233 (17%)
Query: 134 GPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLD 193
GP K YIA Q L+ T+ DFW+M W S+VI+M T E KC Y P +
Sbjct: 313 GPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPE---VG 369
Query: 194 CHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIK 253
R +G + +T +C G+ T +Y + +LQ+
Sbjct: 370 MQRAYGPYSVT-------------------NC----GEHDTT--------EYKLRTLQVS 398
Query: 254 NLET-NLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPG 312
L+ +L RE+ H Y +WP GVP+E +++FL + + AGP+++H S G
Sbjct: 399 PLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLP--HAGPIIVHSSAG 456
Query: 313 TGRTGTVLACDILIRHFETSR---SVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
GRTGT++ D+L+ + T +D+ + + +R R+G V T QY FIY
Sbjct: 457 IGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIY 509
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVR----GPKGEEKFYIACQA 63
P + KNRY N++P +RV + G ++ DYINANY++ GP K YIA Q
Sbjct: 268 PENKGKNRYKNILPFDHSRV-ILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQG 326
Query: 64 PLQNTIEDFWRMIWTHQSKVILMITALFE 92
L+ T+ DFW+M W S+VI+M T E
Sbjct: 327 CLEATVNDFWQMAWQENSRVIVMTTREVE 355
>pdb|2CJZ|A Chain A, Crystal Structure Of The C472s Mutant Of Human Protein
Tyrosine Phosphatase Ptpn5 (Step, Striatum Enriched
Phosphatase) In Complex With Phosphotyrosine
Length = 305
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 114/249 (45%), Gaps = 40/249 (16%)
Query: 125 SLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCAD 184
S I A + G GEEK YIA Q P+ +T+ DFWRM+W + +I+MIT + E +
Sbjct: 94 SYINANYIRGYGGEEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIEEMN------ 147
Query: 185 YLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREK 244
EKC +Y P +V + +IT++K E
Sbjct: 148 --------------------------EKCTEYWPEEQV-----AYDGVEITVQKVIHTED 176
Query: 245 YVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGP 304
Y + + +K+ R L H W+T+WP P+ L+ + E + G P
Sbjct: 177 YRLRLISLKSGTEE--RGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ-QEGPHCAP 233
Query: 305 LVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRV 364
+++H S G GRTG +A I + VD+ + +RQ R G + T +QY F++ V
Sbjct: 234 IIVHSSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGGMIQTCEQYQFVHHV 293
Query: 365 LNVYASKLT 373
+++Y +L+
Sbjct: 294 MSLYEKQLS 302
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 56/89 (62%), Gaps = 9/89 (10%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSED----YINANYVRGPKGEEKFYIACQA 63
PG KNRY ++P P +RV L S D +D YINANY+RG GEEK YIA Q
Sbjct: 62 PGLVRKNRYKTILPNPHSRVCLTS-----PDPDDPLSSYINANYIRGYGGEEKVYIATQG 116
Query: 64 PLQNTIEDFWRMIWTHQSKVILMITALFE 92
P+ +T+ DFWRM+W + +I+MIT + E
Sbjct: 117 PIVSTVADFWRMVWQEHTPIIVMITNIEE 145
>pdb|1PTV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine
Length = 321
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 135
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 136 ED-----------------------------TNLKLTLISEDIKTYYTVRQLELENLTTQ 166
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+H S G GR+GT
Sbjct: 167 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHSSAGIGRSGT 224
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ ++R+ R G + T+ Q F Y
Sbjct: 225 FCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTADQLRFSY 271
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 38 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 90
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 91 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 144
>pdb|1G1F|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Tri-Phosphorylated Peptide (Rdi(Ptr)
Etd(Ptr)(Ptr)rk) From The Insulin Receptor Kinase
pdb|1G1G|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Mono-Phosphorylated Peptide (Etdy(Ptr)
Rkggkgll) From The Insulin Receptor Kinase
pdb|1G1H|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Bis-Phosphorylated Peptide
(Etd(Ptr)(Ptr) Rkggkgll) From The Insulin Receptor
Kinase
pdb|2B4S|A Chain A, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|C Chain C, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
Length = 298
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 135
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 136 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 166
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+H S G GR+GT
Sbjct: 167 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHASAGIGRSGT 224
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 225 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 271
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 38 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 90
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 91 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 144
>pdb|3QKP|A Chain A, Protein Tyrosine Phosphatase 1b - Apo W179f Mutant With
Open Wpd-Loop
pdb|3QKQ|A Chain A, Protein Tyrosine Phosphatase 1b - W179f Mutant Bound With
Vanadate
Length = 321
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 135
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 136 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 166
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT +P GVP +S + FL + R G+ E GP+V+HCS G GR+GT
Sbjct: 167 ETREILHFHYTTFPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHCSAGIGRSGT 224
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 225 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 271
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 38 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 90
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 91 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 144
>pdb|2BV5|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase Ptpn5 At 1.8a Resolution
Length = 282
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 114/249 (45%), Gaps = 40/249 (16%)
Query: 125 SLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCAD 184
S I A + G GEEK YIA Q P+ +T+ DFWRM+W + +I+MIT + E +
Sbjct: 73 SYINANYIRGYGGEEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIEEMN------ 126
Query: 185 YLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREK 244
EKC +Y P +V + +IT++K E
Sbjct: 127 --------------------------EKCTEYWPEEQV-----AYDGVEITVQKVIHTED 155
Query: 245 YVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGP 304
Y + + +K+ R L H W+T+WP P+ L+ + E + G P
Sbjct: 156 YRLRLISLKSGTEE--RGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ-QEGPHCAP 212
Query: 305 LVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRV 364
+++H S G GRTG +A I + VD+ + +RQ R G + T +QY F++ V
Sbjct: 213 IIVHXSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGGMIQTCEQYQFVHHV 272
Query: 365 LNVYASKLT 373
+++Y +L+
Sbjct: 273 MSLYEKQLS 281
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 56/89 (62%), Gaps = 9/89 (10%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSED----YINANYVRGPKGEEKFYIACQA 63
PG KNRY ++P P +RV L S D +D YINANY+RG GEEK YIA Q
Sbjct: 41 PGLVRKNRYKTILPNPHSRVCLTS-----PDPDDPLSSYINANYIRGYGGEEKVYIATQG 95
Query: 64 PLQNTIEDFWRMIWTHQSKVILMITALFE 92
P+ +T+ DFWRM+W + +I+MIT + E
Sbjct: 96 PIVSTVADFWRMVWQEHTPIIVMITNIEE 124
>pdb|1I57|A Chain A, Crystal Structure Of Apo Human Ptp1b (C215s) Mutant
Length = 310
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 90 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 147
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 148 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 178
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+H S G GR+GT
Sbjct: 179 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHSSAGIGRSGT 236
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 237 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 283
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 50 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 102
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 103 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 156
>pdb|1EEN|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-D-A-D-Bpa-Ptyr-L-I-P-Q-Q-G
pdb|1EEO|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-E-L-E-F-Ptyr-M-D-Y-E-Nh2
pdb|1PTY|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Two Phosphotyrosine Molecules
Length = 321
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 135
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 136 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 166
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+H S G GR+GT
Sbjct: 167 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHSSAGIGRSGT 224
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 225 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 271
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 38 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 90
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 91 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 144
>pdb|1AAX|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Two Bis(Para-Phosphophenyl)methane (Bppm)
Molecules
Length = 321
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 135
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 136 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 166
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+H S G GR+GT
Sbjct: 167 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHSSAGIGRSGT 224
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 225 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 271
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 38 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 90
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 91 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 144
>pdb|1RPM|A Chain A, Human Receptor Protein Tyrosine Phosphatase Mu, Domain 1
pdb|1RPM|B Chain B, Human Receptor Protein Tyrosine Phosphatase Mu, Domain 1
Length = 278
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 101/224 (45%), Gaps = 40/224 (17%)
Query: 142 YIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFGDF 201
YIA Q P+Q TI DFWRM+W + I+M+T L E KC Y P
Sbjct: 90 YIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWP-------------- 135
Query: 202 QITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLWR 261
D ++ D ++TL + E+ +YVI + ++ + R
Sbjct: 136 ----------------------DDTEIYKDIKVTLIETELLAEYVIRTFAVEKRGVHEIR 173
Query: 262 ELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLA 321
E+ +T WP GVP + L+ F+ +K + AGPLV+HCS G GRTG +
Sbjct: 174 EIRQFHFTGWPDHGVPYHATGLLGFV----RQVKSKSPPSAGPLVVHCSAGAGRTGCFIV 229
Query: 322 CDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
DI++ E VD+ V +R R V T +QY FI+ +
Sbjct: 230 IDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAI 273
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 13 KNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIEDF 72
KNRY N+I +RVRL + E ++S DYIN NY+ G YIA Q P+Q TI DF
Sbjct: 48 KNRYGNIIAYDHSRVRLQTI-EGDTNS-DYINGNYIDGYH-RPNHYIATQGPMQETIYDF 104
Query: 73 WRMIWTHQSKVILMITALFE 92
WRM+W + I+M+T L E
Sbjct: 105 WRMVWHENTASIIMVTNLVE 124
>pdb|4GRY|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
pdb|4GRZ|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Po4
Length = 288
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 110/233 (47%), Gaps = 40/233 (17%)
Query: 134 GPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLD 193
GP K YIA Q L+ T+ DFW+M W S+VI+M T E KC Y P +
Sbjct: 73 GPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPE---VG 129
Query: 194 CHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIK 253
R +G P V +C G+ T +Y + +LQ+
Sbjct: 130 MQRAYG-------------------PYSVTNC----GEHDTT--------EYKLRTLQVS 158
Query: 254 NLET-NLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPG 312
L+ +L RE+ H Y +WP GVP+E +++FL + + AGP+++H S G
Sbjct: 159 PLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLP--HAGPIIVHSSAG 216
Query: 313 TGRTGTVLACDILIRHFETSR---SVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
GRTGT++ D+L+ + T +D+ + + +R R+G V T QY FIY
Sbjct: 217 IGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIY 269
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVR----GPKGEEKFYIACQA 63
P + KNRY N++P +RV + G ++ DYINANY++ GP K YIA Q
Sbjct: 28 PENKGKNRYKNILPFDHSRV-ILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQG 86
Query: 64 PLQNTIEDFWRMIWTHQSKVILMITALFE 92
L+ T+ DFW+M W S+VI+M T E
Sbjct: 87 CLEATVNDFWQMAWQENSRVIVMTTREVE 115
>pdb|1OEO|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To Sulfonic
Acid
pdb|1OET|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1OEU|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1OEV|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
Length = 321
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 135
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 136 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 166
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+H S G GR+GT
Sbjct: 167 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHXSAGIGRSGT 224
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 225 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 271
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 38 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 90
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 91 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 144
>pdb|3EU0|A Chain A, Crystal Structure Of The S-Nitrosylated Cys215 Of Ptp1b
Length = 327
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 84 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 141
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 142 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 172
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+H S G GR+GT
Sbjct: 173 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHXSAGIGRSGT 230
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 231 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 277
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 44 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 96
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 97 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 150
>pdb|1PTU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine-Containing Hexa-Peptide
(Dadepyl-Nh2)
pdb|1PTT|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine-Containing Tetra-Peptide
(Ac-Depyl-Nh2)
Length = 321
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 135
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 136 ED-----------------------------TNLKLTLISEDIKTYYTVRQLELENLTTQ 166
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+H S G GR+GT
Sbjct: 167 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHSSAGIGRSGT 224
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 225 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 271
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 38 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 90
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 91 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 144
>pdb|1FPR|A Chain A, Crystal Structure Of The Complex Formed Between The
Catalytic Domain Of Shp-1 And An In Vitro Peptide
Substrate Py469 Derived From Shps-1
Length = 284
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 110/233 (47%), Gaps = 40/233 (17%)
Query: 134 GPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLD 193
GP K YIA Q L+ T+ DFW+M W S+VI+M T E KC Y P +
Sbjct: 71 GPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPE---VG 127
Query: 194 CHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIK 253
R +G P V +C G+ T +Y + +LQ+
Sbjct: 128 MQRAYG-------------------PYSVTNC----GEHDTT--------EYKLRTLQVS 156
Query: 254 NLET-NLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPG 312
L+ +L RE+ H Y +WP GVP+E +++FL + + AGP+++H S G
Sbjct: 157 PLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLP--HAGPIIVHSSAG 214
Query: 313 TGRTGTVLACDILIRHFETSR---SVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
GRTGT++ D+L+ + T +D+ + + +R R+G V T QY FIY
Sbjct: 215 IGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIY 267
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVR----GPKGEEKFYIACQA 63
P + KNRY N++P +RV + G ++ DYINANY++ GP K YIA Q
Sbjct: 26 PENKGKNRYKNILPFDHSRV-ILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQG 84
Query: 64 PLQNTIEDFWRMIWTHQSKVILMITALFE 92
L+ T+ DFW+M W S+VI+M T E
Sbjct: 85 CLEATVNDFWQMAWQENSRVIVMTTREVE 113
>pdb|2C7S|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Kappa At 1.95a Resolution
Length = 313
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 104/224 (46%), Gaps = 40/224 (17%)
Query: 142 YIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFGDF 201
YIA Q P+ T+ DFWRMIW QS I+M+T L E KC Y P D V+GDF
Sbjct: 114 YIATQGPVHETVYDFWRMIWQEQSACIVMVTNLVEVGRVKCYKYWP-----DDTEVYGDF 168
Query: 202 QITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLWR 261
++T C + P +E YV+ + ++ N R
Sbjct: 169 KVT--------CVEMEPLAE-----------------------YVVRTFTLERRGYNEIR 197
Query: 262 ELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLA 321
E+ +T WP GVP + L++F+ +K + AGP+V+HCS G GRTG +
Sbjct: 198 EVKQFHFTGWPDHGVPYHATGLLSFI----RRVKLSNPPSAGPIVVHCSAGAGRTGCYIV 253
Query: 322 CDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
DI++ E VD+ V +R R V T +QY FI+ +
Sbjct: 254 IDIMLDMAEREGVVDIYNCVKALRSRRINMVQTEEQYIFIHDAI 297
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Query: 13 KNRYANVIPIPETRVRLCSGGEAASD--SEDYINANYVRGPKGEEKFYIACQAPLQNTIE 70
KNRY N+I +RV L + D S DYINANY+ G + YIA Q P+ T+
Sbjct: 72 KNRYGNIIAYDHSRVIL----QPVEDDPSSDYINANYIDGYQ-RPSHYIATQGPVHETVY 126
Query: 71 DFWRMIWTHQSKVILMITALFE 92
DFWRMIW QS I+M+T L E
Sbjct: 127 DFWRMIWQEQSACIVMVTNLVE 148
>pdb|2PA5|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9
pdb|2PA5|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9
pdb|4GE2|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 3
pdb|4GE2|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 3
pdb|4GE5|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 5
pdb|4GE5|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 5
pdb|4GE6|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 7
pdb|4GE6|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 7
Length = 314
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 115/261 (44%), Gaps = 43/261 (16%)
Query: 120 GAMKQSLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSV 179
G + I A F G K ++ YI Q PL+NT DFW M+W + VI+M T E
Sbjct: 76 GHTQTDYINASFMDGYK-QKNAYIGTQGPLENTYRDFWLMVWEQKVLVIVMTTRFEEGGR 134
Query: 180 EKCADYLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKR 239
KC Y P +EK D FG +T
Sbjct: 135 RKCGQYWP----------------------LEK-----------DSRIRFGFLTVTNLGV 161
Query: 240 EVREKYVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGA-- 297
E Y ++L+I N E R++TH + +WP GVP+ +SLI FL R A
Sbjct: 162 ENMNHYKKTTLEIHNTEERQKRQVTHFQFLSWPDYGVPSSAASLIDFLRVVRNQQSLAVS 221
Query: 298 --AGREAG-----PLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAG 350
R G P+V+HCS G GRTGT + DI + E +++V + V +R RA
Sbjct: 222 NMGARSKGQCPEPPIVVHCSAGIGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQRAF 281
Query: 351 AVATSQQYAFIYRVLNVYASK 371
++ T +QY F Y+ + +A K
Sbjct: 282 SIQTPEQYYFCYKAILEFAEK 302
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 6 LPPGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPL 65
+ PG +KNRY +V + +TRV+L + DYINA+++ G K ++ YI Q PL
Sbjct: 48 MSPGNLEKNRYGDVPCLDQTRVKLTK--RSGHTQTDYINASFMDGYK-QKNAYIGTQGPL 104
Query: 66 QNTIEDFWRMIWTHQSKVILMITALFENSGPK 97
+NT DFW M+W + VI+M T FE G +
Sbjct: 105 ENTYRDFWLMVWEQKVLVIVMTTR-FEEGGRR 135
>pdb|1PA1|A Chain A, Crystal Structure Of The C215d Mutant Of Protein Tyrosine
Phosphatase 1b
Length = 310
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 90 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 147
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + L TL +++ Y + L+++NL T
Sbjct: 148 EDTNLKL-----------------------------TLISEDIKSYYTVRQLELENLTTQ 178
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+H S G GR+GT
Sbjct: 179 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHDSAGIGRSGT 236
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 237 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 283
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 50 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 102
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 103 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 156
>pdb|3A5K|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 304
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E K A Y P E + +F
Sbjct: 84 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKWAQYWPQKE--EKEMIF 141
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 142 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 172
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+HCS G GR+GT
Sbjct: 173 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHCSAGIGRSGT 230
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 231 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 277
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 44 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 96
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 97 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKWAQYWPQKEEKEMIFEDTNLKLTL 150
>pdb|1P15|A Chain A, Crystal Structure Of The D2 Domain Of Rptpa
pdb|1P15|B Chain B, Crystal Structure Of The D2 Domain Of Rptpa
Length = 253
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 114/257 (44%), Gaps = 39/257 (15%)
Query: 120 GAMKQSLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSV 179
G + A F G + ++ YIA Q PL +TIEDFWRMIW +S I+M+T L E
Sbjct: 33 GEENTDYVNASFIDGYRQKDS-YIASQGPLLHTIEDFWRMIWEWKSCSIVMLTELEERGQ 91
Query: 180 EKCADYLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKR 239
EKCA Y P ++ +GD + LKK E +C
Sbjct: 92 EKCAQYWPSDGLVS----YGDITVELKKEE--------------EC-------------- 119
Query: 240 EVREKYVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAG 299
E Y + L + N N R++ + WP G+P++ +I + + + +
Sbjct: 120 ---ESYTVRDLLVTNTRENKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQQSGN 176
Query: 300 REAGPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYA 359
P+ +HCS G GRTGT A ++ + +DV + V ++R R V T +QY
Sbjct: 177 H---PITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYE 233
Query: 360 FIYRVLNVYASKLTGGA 376
F Y+V+ Y + A
Sbjct: 234 FCYKVVQEYIDAFSDYA 250
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 9/95 (9%)
Query: 8 PGTEDKNRYANVIPIPETRVRL-CSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQ 66
P KNR +IP RV + GE ++ DY+NA+++ G + ++ YIA Q PL
Sbjct: 7 PANMKKNRVLQIIPYEFNRVIIPVKRGE---ENTDYVNASFIDGYRQKDS-YIASQGPLL 62
Query: 67 NTIEDFWRMIWTHQSKVILMITALFENSGPKGEEK 101
+TIEDFWRMIW +S I+M+T L E +G+EK
Sbjct: 63 HTIEDFWRMIWEWKSCSIVMLTELEE----RGQEK 93
>pdb|3ZV2|A Chain A, Human Protein-Tyrosine Phosphatase 1b C215a, S216a Mutant
Length = 320
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 107/227 (47%), Gaps = 36/227 (15%)
Query: 139 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVF 198
++ YI Q PL NT FW M+W +S+ ++M+ + E KCA Y P E + +F
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE--EKEMIF 135
Query: 199 GDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETN 258
D + ++TL +++ Y + L+++NL T
Sbjct: 136 ED-----------------------------TNLKLTLISEDIKSYYTVRQLELENLTTQ 166
Query: 259 LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
RE+ H YT WP GVP +S + FL + R G+ E GP+V+H + G GR+GT
Sbjct: 167 ETREILHFHYTTWPDFGVPESPASFLNFLFKVRE--SGSLSPEHGPVVVHAAAGIGRSGT 224
Query: 319 VL---ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
C +L+ + SVD+ +V+ +R+ R G + T+ Q F Y
Sbjct: 225 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSY 271
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P +++NRY +V P +R++L + DYINA+ ++ + + + YI Q PL N
Sbjct: 38 PKNKNRNRYRDVSPFDHSRIKL------HQEDNDYINASLIKMEEAQ-RSYILTQGPLPN 90
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSG-------PKGEEKFYIACQAPLQNTI 114
T FW M+W +S+ ++M+ + E P+ EEK I L+ T+
Sbjct: 91 TCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTL 144
>pdb|1YGR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGU|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Cd45 With A Ptyr Peptide
pdb|1YGU|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Cd45 With A Ptyr Peptide
Length = 610
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 114/250 (45%), Gaps = 39/250 (15%)
Query: 120 GAMKQSLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSV 179
G + I A + G K E + YIA Q P T++DFWR IW ++ VI+ +T E +
Sbjct: 78 GDAGSNYINASYIDGFK-EPRKYIAAQGPRDETVDDFWRXIWEQKATVIVXVTRCEEGNR 136
Query: 180 EKCADYLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKR 239
KCA+Y P E + R FGD + +K + ++C D
Sbjct: 137 NKCAEYWPSXE--EGTRAFGD--VVVKINQHKRCPD------------------------ 168
Query: 240 EVREKYVISSLQIKN-LETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAA 298
Y+I L I N E RE+TH+ +T+WP GVP + L++ R + +
Sbjct: 169 -----YIIQKLNIVNKKEKATGREVTHIQFTSWPDHGVPEDPH----LLLKLRRRVNAFS 219
Query: 299 GREAGPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQY 358
+GP+V+H S G GRTGT + D + E VDV V +R+ R V QY
Sbjct: 220 NFFSGPIVVHSSAGVGRTGTYIGIDAXLEGLEAENKVDVYGYVVKLRRQRCLXVQVEAQY 279
Query: 359 AFIYRVLNVY 368
I++ L Y
Sbjct: 280 ILIHQALVEY 289
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 103/229 (44%), Gaps = 42/229 (18%)
Query: 143 IACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFGDFQ 202
IA Q PL+ TI DFW+ I+ + KVI+ +T L E CA Y +G+ +
Sbjct: 410 IAAQGPLKETIGDFWQXIFQRKVKVIVXLTELKHGDQEICAQY------------WGEGK 457
Query: 203 ITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLWRE 262
T +GD ++ LK + Y + ++++ + R
Sbjct: 458 QT------------------------YGDIEVDLKDTDKSSTYTLRVFELRHSKRKDSRT 493
Query: 263 LTHVWYTNWPTTGVPNEESSLIAFL------IEARAHMKGAAGREAGPLVIHCSPGTGRT 316
+ YTNW +P E LI+ + + + +G ++ PL+IHC G+ +T
Sbjct: 494 VYQYQYTNWSVEQLPAEPKELISXIQVVKQKLPQKNSSEGNKHHKSTPLLIHCRDGSQQT 553
Query: 317 GTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
G A L+ ET VD+ +VV +R+ R G V+T +QY F+Y V+
Sbjct: 554 GIFCALLNLLESAETEEVVDIFQVVKALRKARLGXVSTFEQYQFLYDVI 602
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 5/82 (6%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCS-GGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQ 66
P ++KNRY +++P RV L G+A S+ YINA+Y+ G K E + YIA Q P
Sbjct: 52 PFNQNKNRYVDILPYDYNRVELSEINGDAGSN---YINASYIDGFK-EPRKYIAAQGPRD 107
Query: 67 NTIEDFWRMIWTHQSKVILMIT 88
T++DFWR IW ++ VI+ +T
Sbjct: 108 ETVDDFWRXIWEQKATVIVXVT 129
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 18/98 (18%)
Query: 10 TEDKNRYANVIPIPETRVRLCSGGEAASDS-----------------EDYINANYVRGPK 52
+ KNR +NVIP RV L E + +S YINA+++
Sbjct: 345 NKSKNRNSNVIPYDYNRVPLKHELEMSKESEHDSDESSDDDSDSEEPSKYINASFIXSYW 404
Query: 53 GEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITAL 90
E IA Q PL+ TI DFW+ I+ + KVI+ +T L
Sbjct: 405 KPE-VXIAAQGPLKETIGDFWQXIFQRKVKVIVXLTEL 441
>pdb|1L8K|A Chain A, T Cell Protein-Tyrosine Phosphatase Structure
Length = 314
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 116/263 (44%), Gaps = 44/263 (16%)
Query: 103 YIACQAPLQNTIEDFYFGAMKQSLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWT 162
Y + LQN D+ + SL+ E + ++ YI Q PL NT FW M+W
Sbjct: 54 YDHSRVKLQNAENDY----INASLVDIEEA------QRSYILTQGPLPNTCCHFWLMVWQ 103
Query: 163 HQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEV 222
++K ++M+ + E KCA Y P D ++ K+
Sbjct: 104 QKTKAVVMLNRIVEKESVKCAQYWPTD----------DQEMLFKE--------------- 138
Query: 223 LDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESS 282
F + L +V+ Y + LQ++N+ + R ++H YT WP GVP +S
Sbjct: 139 -------TGFSVKLLSEDVKSYYTVHLLQLENINSGETRTISHFHYTTWPDFGVPESPAS 191
Query: 283 LIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVY 342
+ FL + R G+ + GP VIHCS G GR+GT D + E +++ +V+
Sbjct: 192 FLNFLFKVRE--SGSLNPDHGPAVIHCSAGIGRSGTFSLVDTCLVLMEKGDDINIKQVLL 249
Query: 343 NIRQCRAGAVATSQQYAFIYRVL 365
N+R+ R G + T Q F Y +
Sbjct: 250 NMRKYRMGLIQTPDQLRFSYMAI 272
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P ++NRY +V P +RV+L + DYINA+ V + + + YI Q PL N
Sbjct: 40 PENRNRNRYRDVSPYDHSRVKLQNA------ENDYINASLVDIEEAQ-RSYILTQGPLPN 92
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSGPK 97
T FW M+W ++K ++M+ + E K
Sbjct: 93 TCCHFWLMVWQQKTKAVVMLNRIVEKESVK 122
>pdb|3QCM|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
pdb|3QCM|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
Length = 310
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 105/226 (46%), Gaps = 28/226 (12%)
Query: 140 KFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFG 199
K YIA Q PL++T EDFWRMIW + +I+MIT L E KC Y P + +G
Sbjct: 101 KAYIATQGPLKSTFEDFWRMIWEQNTGIIIMITNLVEKGRRKCDQYWPTENTEE----YG 156
Query: 200 DFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNL 259
+ +TLK ++ C T+++ +R V +
Sbjct: 157 NIIVTLKSTKIHAC--------------------YTVRRFSIRNTKVKKGQKGNPKGRQN 196
Query: 260 WRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTV 319
R + YT WP GVP ++ F+ + A A E GP+++HCS G GRTGT
Sbjct: 197 ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA----ARMPETGPVLVHCSAGVGRTGTY 252
Query: 320 LACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
+ D +++ + +V+V + +IR R V T +QY FI+ L
Sbjct: 253 IVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDAL 298
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 61/108 (56%), Gaps = 7/108 (6%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P + KNRY N++ +RV+L S DYINANYV G + K YIA Q PL++
Sbjct: 54 PENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDG-YNKAKAYIATQGPLKS 112
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIE 115
T EDFWRMIW + +I+MIT L E K ++ + P +NT E
Sbjct: 113 TFEDFWRMIWEQNTGIIIMITNLVEKGRRKCDQYW------PTENTEE 154
>pdb|3QCL|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-(4-Hydroxybut-1-Yn-1-
Yl)benzoic Acid
pdb|3QCN|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Trigonal Crystal Form
Length = 310
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 105/226 (46%), Gaps = 28/226 (12%)
Query: 140 KFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFG 199
K YIA Q PL++T EDFWRMIW + +I+MIT L E KC Y P + +G
Sbjct: 101 KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENTEE----YG 156
Query: 200 DFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNL 259
+ +TLK ++ C T+++ +R V +
Sbjct: 157 NIIVTLKSTKIHAC--------------------YTVRRFSIRNTKVKKGQKGNPKGRQN 196
Query: 260 WRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTV 319
R + YT WP GVP ++ F+ + A A E GP+++HCS G GRTGT
Sbjct: 197 ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA----ARMPETGPVLVHCSAGVGRTGTY 252
Query: 320 LACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
+ D +++ + +V+V + +IR R V T +QY FI+ L
Sbjct: 253 IVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDAL 298
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 61/108 (56%), Gaps = 7/108 (6%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P + KNRY N++ +RV+L S DYINANYV G + K YIA Q PL++
Sbjct: 54 PENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDG-YNKAKAYIATQGPLKS 112
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIE 115
T EDFWRMIW + +I+MIT L E K ++ + P +NT E
Sbjct: 113 TFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYW------PTENTEE 154
>pdb|1WCH|A Chain A, Crystal Structure Of Ptpl1 Human Tyrosine Phosphatase
Mutated In Colorectal Cancer - Evidence For A Second
Phosphotyrosine Substrate Recognition Pocket
Length = 315
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 117/247 (47%), Gaps = 39/247 (15%)
Query: 127 IFAEFSTGPKGEEKF-YIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADY 185
I A F P G+E+F YIACQ PL T+ DFW+MIW +S VI M+T E KC Y
Sbjct: 101 INASFIKIPVGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRY 160
Query: 186 LPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKY 245
P + G + V ++ L + + + +
Sbjct: 161 WP--------NILGKTTM------------------------VSNRLRLALVRMQQLKGF 188
Query: 246 VISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPL 305
V+ ++ +++++T R ++H+ +T WP P++ L+ F+ R H+ +GP+
Sbjct: 189 VVRAMTLEDIQTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMR-HI-----HRSGPI 242
Query: 306 VIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
+ HCS G GR+GT++ D+++ D+ +V +R R G V T QY F Y+V+
Sbjct: 243 ITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVI 302
Query: 366 NVYASKL 372
++L
Sbjct: 303 LYVLTRL 309
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 52/86 (60%), Gaps = 8/86 (9%)
Query: 13 KNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKF-YIACQAPLQNTIED 71
KNRY N++P TRV L D YINA++++ P G+E+F YIACQ PL T+ D
Sbjct: 78 KNRYKNILPYDATRVPL-------GDEGGYINASFIKIPVGKEEFVYIACQGPLPTTVGD 130
Query: 72 FWRMIWTHQSKVILMITALFENSGPK 97
FW+MIW +S VI M+T E K
Sbjct: 131 FWQMIWEQKSTVIAMMTQEVEGEKIK 156
>pdb|2H4V|A Chain A, Crystal Structure Of The Human Tyrosine Receptor
Phosphatase Gamma
pdb|2H4V|B Chain B, Crystal Structure Of The Human Tyrosine Receptor
Phosphatase Gamma
Length = 320
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 105/226 (46%), Gaps = 28/226 (12%)
Query: 140 KFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFG 199
K YIA Q PL++T EDFWRMIW + +I+MIT L E KC Y P + +G
Sbjct: 112 KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEE----YG 167
Query: 200 DFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNL 259
+ +TLK ++ C T+++ +R V +
Sbjct: 168 NIIVTLKSTKIHAC--------------------YTVRRFSIRNTKVKKGQKGNPKGRQN 207
Query: 260 WRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTV 319
R + YT WP GVP ++ F+ + A A E GP+++HCS G GRTGT
Sbjct: 208 ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA----ARMPETGPVLVHCSAGVGRTGTY 263
Query: 320 LACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
+ D +++ + +V+V + +IR R V T +QY FI+ L
Sbjct: 264 IVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDAL 309
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P + KNRY N++ +RV+L S DYINANYV G + K YIA Q PL++
Sbjct: 65 PENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDG-YNKAKAYIATQGPLKS 123
Query: 68 TIEDFWRMIWTHQSKVILMITALFE 92
T EDFWRMIW + +I+MIT L E
Sbjct: 124 TFEDFWRMIWEQNTGIIVMITNLVE 148
>pdb|3QCB|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Apo
pdb|3QCB|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Apo
pdb|3QCC|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCC|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCD|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Trigonal Crystal Form
pdb|3QCE|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCE|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCF|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCF|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCG|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3-Bromo-4-Chlorobenzyl)sulfanyl]thiophene-2-
Carboxylic Acid
pdb|3QCH|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]-N-(Methylsulfonyl)
Thiophene-2-Carboxamide
pdb|3QCI|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
N-[(3-Aminophenyl)sulfonyl]-3-[(3,4-Dichlorobenzyl)
Sulfanyl]thiophene-2-Carboxamide
pdb|3QCJ|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
5-[({3-[(3,4-Dichlorobenzyl)sulfanyl]thiophen-2-
Yl}carbonyl)sulfamoyl]-2-Methoxybenzoic Acid
pdb|3QCK|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]benzoic Acid
Length = 310
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 105/226 (46%), Gaps = 28/226 (12%)
Query: 140 KFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFG 199
K YIA Q PL++T EDFWRMIW + +I+MIT L E KC Y P + +G
Sbjct: 101 KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEE----YG 156
Query: 200 DFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNL 259
+ +TLK ++ C T+++ +R V +
Sbjct: 157 NIIVTLKSTKIHAC--------------------YTVRRFSIRNTKVKKGQKGNPKGRQN 196
Query: 260 WRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTV 319
R + YT WP GVP ++ F+ + A A E GP+++HCS G GRTGT
Sbjct: 197 ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA----ARMPETGPVLVHCSAGVGRTGTY 252
Query: 320 LACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
+ D +++ + +V+V + +IR R V T +QY FI+ L
Sbjct: 253 IVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDAL 298
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P + KNRY N++ +RV+L S DYINANYV G + K YIA Q PL++
Sbjct: 54 PENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDG-YNKAKAYIATQGPLKS 112
Query: 68 TIEDFWRMIWTHQSKVILMITALFE 92
T EDFWRMIW + +I+MIT L E
Sbjct: 113 TFEDFWRMIWEQNTGIIVMITNLVE 137
>pdb|2PBN|A Chain A, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma
Length = 313
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 105/226 (46%), Gaps = 28/226 (12%)
Query: 140 KFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFG 199
K YIA Q PL++T EDFWRMIW + +I+MIT L E KC Y P + +G
Sbjct: 102 KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEE----YG 157
Query: 200 DFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNL 259
+ +TLK ++ C T+++ +R V +
Sbjct: 158 NIIVTLKSTKIHAC--------------------YTVRRFSIRNTKVKKGQKGNPKGRQN 197
Query: 260 WRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTV 319
R + YT WP GVP ++ F+ + A A E GP+++HCS G GRTGT
Sbjct: 198 ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA----ARMPETGPVLVHCSAGVGRTGTY 253
Query: 320 LACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
+ D +++ + +V+V + +IR R V T +QY FI+ L
Sbjct: 254 IVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDAL 299
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P + KNRY N++ +RV+L S DYINANYV G + K YIA Q PL++
Sbjct: 55 PENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDG-YNKAKAYIATQGPLKS 113
Query: 68 TIEDFWRMIWTHQSKVILMITALFE 92
T EDFWRMIW + +I+MIT L E
Sbjct: 114 TFEDFWRMIWEQNTGIIVMITNLVE 138
>pdb|2NLK|A Chain A, Crystal Structure Of D1 And D2 Catalytic Domains Of Human
Protein Tyrosine Phosphatase Gamma (D1+d2 Ptprg)
Length = 627
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 105/226 (46%), Gaps = 28/226 (12%)
Query: 140 KFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFG 199
K YIA Q PL++T EDFWRMIW + +I+MIT L E KC Y P + +G
Sbjct: 94 KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEE----YG 149
Query: 200 DFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNL 259
+ +TLK ++ C T+++ +R V +
Sbjct: 150 NIIVTLKSTKIHAC--------------------YTVRRFSIRNTKVKKGQKGNPKGRQN 189
Query: 260 WRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTV 319
R + YT WP GVP ++ F+ + A A E GP+++HCS G GRTGT
Sbjct: 190 ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA----ARMPETGPVLVHCSAGVGRTGTY 245
Query: 320 LACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
+ D +++ + +V+V + +IR R V T +QY FI+ L
Sbjct: 246 IVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDAL 291
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P + KNRY N++ +RV+L S DYINANYV G + K YIA Q PL++
Sbjct: 47 PENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDG-YNKAKAYIATQGPLKS 105
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSGPKGEE 100
T EDFWRMIW + +I+MIT L E K ++
Sbjct: 106 TFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQ 138
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 96/242 (39%), Gaps = 49/242 (20%)
Query: 142 YIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFGDF 201
+I Q PL +T +DFWRMIW H +++I+M LP ++ L
Sbjct: 395 FIITQHPLPHTTKDFWRMIWDHNAQIIVM---------------LPDNQSL--------- 430
Query: 202 QITLKKREVEKCADYLPP-SEVLDCHRVFGDFQITLKKREV-----REKYVISSLQIKNL 255
E Y P E ++C F +TL ++ E+ +I ++
Sbjct: 431 --------AEDEFVYWPSREESMNCEA----FTVTLISKDRLCLSNEEQIIIHDFILEAT 478
Query: 256 ETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGR 315
+ + E+ H WP P I+ E +K A GP ++H G
Sbjct: 479 QDDYVLEVRHFQCPKWPNPDAP------ISSTFELINVIKEEALTRDGPTIVHDEYGAVS 532
Query: 316 TGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYR-VLNVYASKLTG 374
G + A L + E +VDV +V I R G +QY FIY+ +L++ ++K G
Sbjct: 533 AGMLCALTTLSQQLENENAVDVFQVAKMINLMRPGVFTDIEQYQFIYKAMLSLVSTKENG 592
Query: 375 GA 376
Sbjct: 593 NG 594
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 10 TEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTI 69
++KNR ++V+P RV L DYINA+Y+ G +F I Q PL +T
Sbjct: 350 NKEKNRNSSVVPSERARVGLAP--LPGMKGTDYINASYIMGYYRSNEF-IITQHPLPHTT 406
Query: 70 EDFWRMIWTHQSKVILMI 87
+DFWRMIW H +++I+M+
Sbjct: 407 KDFWRMIWDHNAQIIVML 424
>pdb|2BZL|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase N14 At 1.65 A Resolution
Length = 325
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 108/236 (45%), Gaps = 39/236 (16%)
Query: 137 GEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHR 196
G E YIA Q PL +T DFW+M+W VI M+TA E K Y P
Sbjct: 112 GAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWPKLGSKHSSA 171
Query: 197 VFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLE 256
+G F++T K R C Y + L++K+L
Sbjct: 172 TYGKFKVTTKFRTDSVC-------------------------------YATTGLKVKHLL 200
Query: 257 TNLWRELTHVWYTNWPTTGVPNEESSLIAFLIE---ARAH----MKGAAGREAGPLVIHC 309
+ R + H+ YT+WP G P + +++L E R H ++G R P+V+HC
Sbjct: 201 SGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRRHTNSMLEGTKNRHP-PIVVHC 259
Query: 310 SPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
S G GRTG ++ +++I E + V+VP ++ +R+ R + T QY F+Y+VL
Sbjct: 260 SAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVL 315
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGP-KGEEKFYIACQAPLQ 66
P +++R V+P E RV L E ++ YINA++++ G E YIA Q PL
Sbjct: 69 PENAERSRIREVVPYEENRVELIPTKE---NNTGYINASHIKVVVGGAEWHYIATQGPLP 125
Query: 67 NTIEDFWRMIWTHQSKVILMITA 89
+T DFW+M+W VI M+TA
Sbjct: 126 HTCHDFWQMVWEQGVNVIAMVTA 148
>pdb|3B7O|A Chain A, Crystal Structure Of The Human Tyrosine Phosphatase Shp2
(Ptpn11) With An Accessible Active Site
Length = 316
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 143/334 (42%), Gaps = 49/334 (14%)
Query: 53 GEEKFYIACQAPLQNTI-EDFWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQ 111
G E Y A + + + FW T Q + ++ + E + + K P
Sbjct: 14 GTENLYFQSMAETTDKVKQGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFD 73
Query: 112 NTIEDFYFGA--------MKQSLIFAEFSTGPKGEE--KFYIACQAPLQNTIEDFWRMIW 161
+T + G + ++I EF T + K YIA Q LQNT+ DFWRM++
Sbjct: 74 HTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVF 133
Query: 162 THQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSE 221
S+VI+M T E KC Y P L + V ++ R V++ A +
Sbjct: 134 QENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGV-------MRVRNVKESAAH----- 181
Query: 222 VLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEES 281
D+ + RE++ +S + N E +W+ + WP GVP++
Sbjct: 182 ---------DYTL----RELK----LSKVGQGNTERTVWQ----YHFRTWPDHGVPSDPG 220
Query: 282 SLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTV---LACDILIRHFETSRSVDVP 338
++ FL E H K + +AGP+V+HCS G GRTGT +IR +DVP
Sbjct: 221 GVLDFLEE--VHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVP 278
Query: 339 RVVYNIRQCRAGAVATSQQYAFIYRVLNVYASKL 372
+ + +R R+G V T QY FIY + Y L
Sbjct: 279 KTIQMVRSQRSGMVQTEAQYRFIYMAVQHYIETL 312
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 10 TEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGE--------EKFYIAC 61
++KNRY N++P TRV L G+ DYINAN + P+ E +K YIA
Sbjct: 60 NKNKNRYKNILPFDHTRVVL-HDGDPNEPVSDYINANIIM-PEFETKCNNSKPKKSYIAT 117
Query: 62 QAPLQNTIEDFWRMIWTHQSKVILMITALFENSGPK 97
Q LQNT+ DFWRM++ S+VI+M T E K
Sbjct: 118 QGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSK 153
>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
Length = 583
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 110/246 (44%), Gaps = 40/246 (16%)
Query: 120 GAMKQSLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSV 179
G M I A + G + + YIA Q PL T DFWRM+W +S ++M+T L E S
Sbjct: 81 GIMGSDYINANYVDGYR-RQNAYIATQGPLPETFGDFWRMVWEQRSATVVMMTRLEEKSR 139
Query: 180 EKCADYLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKR 239
KC Y P +G Q+TL + + A + C R F +L K
Sbjct: 140 IKCDQYWPNRGT----ETYGFIQVTL--LDTMELATF--------CVRTF-----SLHKN 180
Query: 240 EVREKYVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAG 299
EK RE+ H +T WP GVP + +AFL +K
Sbjct: 181 GSSEK----------------REVRHFQFTAWPDHGVPEYPTPFLAFL----RRVKTCNP 220
Query: 300 REAGPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYA 359
+AGP+V+HCS G GRTG + D ++ +T ++VDV V +R R V T QY
Sbjct: 221 PDAGPIVVHCSAGVGRTGCFIVIDAMLERIKTEKTVDVYGHVTLMRSQRNYMVQTEDQYG 280
Query: 360 FIYRVL 365
FI+ L
Sbjct: 281 FIHEAL 286
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 100/244 (40%), Gaps = 38/244 (15%)
Query: 120 GAMKQSLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSV 179
G I A F G + ++K YIA Q PL T EDFWR +W + S +++M+T L E
Sbjct: 370 GVEGSDYINASFIDGYR-QQKAYIATQGPLAETTEDFWRALWENNSTIVVMLTKLREMGR 428
Query: 180 EKCADYLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKR 239
EKC Y P +Q + V+ A+Y P
Sbjct: 429 EKCHQYWPAERS-------ARYQYFV----VDPMAEYNMP-------------------- 457
Query: 240 EVREKYVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAG 299
+Y++ ++ + R + +T+WP G P I F+ + H
Sbjct: 458 ----QYILREFKVTDARDGQSRTVRQFQFTDWPEQGAPKSGEGFIDFI--GQVHKTKEQF 511
Query: 300 REAGPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYA 359
+ GP+ +HCS G GRTG + I++ VD+ + V +R R V T +Y
Sbjct: 512 GQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKVLRTQRPAMVQTEDEYQ 571
Query: 360 FIYR 363
F ++
Sbjct: 572 FCFQ 575
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 13 KNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIEDF 72
KNRYANVI +RV + E S DYINANYV G + + YIA Q PL T DF
Sbjct: 60 KNRYANVIAYDHSRV-ILQPLEGIMGS-DYINANYVDGYR-RQNAYIATQGPLPETFGDF 116
Query: 73 WRMIWTHQSKVILMITALFENS 94
WRM+W +S ++M+T L E S
Sbjct: 117 WRMVWEQRSATVVMMTRLEEKS 138
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P + KNR N++P +RV C + DYINA+++ G + ++K YIA Q PL
Sbjct: 344 PCNKFKNRLVNILPYESSRV--CLQPIRGVEGSDYINASFIDGYR-QQKAYIATQGPLAE 400
Query: 68 TIEDFWRMIWTHQSKVILMITALFE 92
T EDFWR +W + S +++M+T L E
Sbjct: 401 TTEDFWRALWENNSTIVVMLTKLRE 425
>pdb|3O5X|A Chain A, Crystal Structure Of The Oncogenic Tyrosine Phosphatase
Shp2 Complexed With A Salicylic Acid-Based Small
Molecule Inhibitor
pdb|3MOW|A Chain A, Crystal Structure Of Shp2 In Complex With A Tautomycetin
Analog Ttn D- 1
Length = 276
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 119/253 (47%), Gaps = 40/253 (15%)
Query: 125 SLIFAEFSTGPKGEE--KFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKC 182
++I EF T + K YIA Q LQNT+ DFWRM++ S+VI+M T E KC
Sbjct: 48 NIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKC 107
Query: 183 ADYLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVR 242
Y P L + V ++ R V++ A + D+ + RE++
Sbjct: 108 VKYWPDEYALKEYGV-------MRVRNVKESAAH--------------DYTL----RELK 142
Query: 243 EKYVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREA 302
+S + N E +W+ + WP GVP++ ++ FL E H K + +A
Sbjct: 143 ----LSKVGQGNTERTVWQ----YHFRTWPDHGVPSDPGGVLDFLEE--VHHKQESIMDA 192
Query: 303 GPLVIHCSPGTGRTGT---VLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYA 359
GP+V+HCS G GRTGT + +IR +DVP+ + +R R+G V T QY
Sbjct: 193 GPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYR 252
Query: 360 FIYRVLNVYASKL 372
FIY + Y L
Sbjct: 253 FIYMAVQHYIETL 265
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 10 TEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGE--------EKFYIAC 61
++KNRY N++P TRV L G+ DYINAN + P+ E +K YIA
Sbjct: 13 NKNKNRYKNILPFDHTRVVL-HDGDPNEPVSDYINANIIM-PEFETKCNNSKPKKSYIAT 70
Query: 62 QAPLQNTIEDFWRMIWTHQSKVILMITALFENSGPK 97
Q LQNT+ DFWRM++ S+VI+M T E K
Sbjct: 71 QGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSK 106
>pdb|3S3E|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster
pdb|3S3E|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster
pdb|3S3F|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecule Inhibitor
Vanadate
pdb|3S3F|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecule Inhibitor
Vanadate
pdb|3S3H|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Phosphopeptide Substrate
Gp4
pdb|3S3H|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Phosphopeptide Substrate
Gp4
pdb|3S3K|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecular Inhibitor
Para-Nitrocatechol Sulphate
pdb|3S3K|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecular Inhibitor
Para-Nitrocatechol Sulphate
Length = 307
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 107/239 (44%), Gaps = 41/239 (17%)
Query: 127 IFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYL 186
I A + G +F I Q PL +T +DFWRM W S+ I+M+T FE EKC Y
Sbjct: 101 INANYVPGHNSPREF-IVTQGPLHSTRDDFWRMCWESNSRAIVMLTRCFEKGREKCDQYW 159
Query: 187 PPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYV 246
P V VF +GD ++ + +V
Sbjct: 160 PNDTVP----VF------------------------------YGDIKVQILNDSHYADWV 185
Query: 247 ISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLV 306
++ + + R L H +T WP GVPN +L+ F+ R + G E P+V
Sbjct: 186 MTEFML--CRGSEQRILRHFHFTTWPDFGVPNPPQTLVRFVRAFRDRI----GAEQRPIV 239
Query: 307 IHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
+HCS G GR+GT + D +++ TS VD+ +VY +R+ R V T QQY I++ L
Sbjct: 240 VHCSAGVGRSGTFITLDRILQQINTSDYVDIFGIVYAMRKERVWMVQTEQQYICIHQCL 298
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSE--DYINANYVRGPKGEEKFYIACQAPL 65
P KNR+ N++P +R +L + D E DYINANYV G +F I Q PL
Sbjct: 68 PCNRPKNRFTNILPYDHSRFKL----QPVDDDEGSDYINANYVPGHNSPREF-IVTQGPL 122
Query: 66 QNTIEDFWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMK-Q 124
+T +DFWRM W S+ I+M+T FE KG EK C N ++G +K Q
Sbjct: 123 HSTRDDFWRMCWESNSRAIVMLTRCFE----KGREK----CDQYWPNDTVPVFYGDIKVQ 174
Query: 125 SLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIW 161
L + ++ E ++ C+ Q + F W
Sbjct: 175 ILNDSHYADWVMTE---FMLCRGSEQRILRHFHFTTW 208
>pdb|1YFO|A Chain A, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
pdb|1YFO|B Chain B, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
Length = 302
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 114/246 (46%), Gaps = 36/246 (14%)
Query: 120 GAMKQSLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSV 179
G I A F G + + KF IA Q P + T+ DFWRMIW + I+M+T L E
Sbjct: 79 GVPDSDYINASFINGYQEKNKF-IAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKE 137
Query: 180 EKCADYLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKR 239
KCA Y P +G+ +++++ +V DY T++K
Sbjct: 138 CKCAQYWPDQGCW----TYGNVRVSVE--DVTVLVDY------------------TVRKF 173
Query: 240 EVREKYVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAG 299
+++ +++ + + L +T +T+WP GVP ++ FL +K
Sbjct: 174 CIQQVGDVTNRKPQRL-------ITQFHFTSWPDFGVPFTPIGMLKFL----KKVKACNP 222
Query: 300 REAGPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYA 359
+ AG +V+HCS G GRTGT + D ++ + R VDV V IR R V T QY
Sbjct: 223 QYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYV 282
Query: 360 FIYRVL 365
FIY+ L
Sbjct: 283 FIYQAL 288
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Query: 10 TEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTI 69
++KNRY N++P +RV L + E DS DYINA+++ G + + KF IA Q P + T+
Sbjct: 55 NKEKNRYVNILPYDHSRVHL-TPVEGVPDS-DYINASFINGYQEKNKF-IAAQGPKEETV 111
Query: 70 EDFWRMIWTHQSKVILMITALFE 92
DFWRMIW + I+M+T L E
Sbjct: 112 NDFWRMIWEQNTATIVMVTNLKE 134
>pdb|2HY3|A Chain A, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma In Complex With Vanadate
pdb|2HY3|B Chain B, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma In Complex With Vanadate
Length = 313
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 102/226 (45%), Gaps = 28/226 (12%)
Query: 140 KFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFG 199
K YIA Q PL++T EDFWR IW + +I+ IT L E KC Y P + +G
Sbjct: 102 KAYIATQGPLKSTFEDFWRXIWEQNTGIIVXITNLVEKGRRKCDQYWPTENSEE----YG 157
Query: 200 DFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNL 259
+ +TLK ++ C T+++ +R V +
Sbjct: 158 NIIVTLKSTKIHAC--------------------YTVRRFSIRNTKVKKGQKGNPKGRQN 197
Query: 260 WRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTV 319
R + YT WP GVP ++ F+ + A A E GP+++HCS G GRTGT
Sbjct: 198 ERVVIQYHYTQWPDXGVPEYALPVLTFVRRSSA----ARXPETGPVLVHCSAGVGRTGTY 253
Query: 320 LACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
+ D ++ + +V+V + +IR R V T +QY FI+ L
Sbjct: 254 IVIDSXLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDAL 299
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P + KNRY N++ +RV+L S DYINANYV G + K YIA Q PL++
Sbjct: 55 PENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDG-YNKAKAYIATQGPLKS 113
Query: 68 TIEDFWRMIWTHQSKVILMITALFE 92
T EDFWR IW + +I+ IT L E
Sbjct: 114 TFEDFWRXIWEQNTGIIVXITNLVE 138
>pdb|2JJD|A Chain A, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|B Chain B, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|C Chain C, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|D Chain D, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|E Chain E, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|F Chain F, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
Length = 599
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 107/242 (44%), Gaps = 37/242 (15%)
Query: 127 IFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYL 186
I A + G K + KF IA Q P Q T+ DFWRM+W +S I+M+T L E EKC Y
Sbjct: 85 INASYIDGYKEKNKF-IAAQGPKQETVNDFWRMVWEQKSATIVMLTNLKERKEEKCHQYW 143
Query: 187 PPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYV 246
P +G+ ++ VE C V D+ I K+
Sbjct: 144 PDQGCW----TYGNIRVC-----VEDCV-------------VLVDYTI--------RKFC 173
Query: 247 ISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLV 306
I + R ++ + +T+WP GVP ++ FL +K AGP+V
Sbjct: 174 IQPQLPDGCKAP--RLVSQLHFTSWPDFGVPFTPIGMLKFL----KKVKTLNPVHAGPIV 227
Query: 307 IHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLN 366
+HCS G GRTGT + D ++ + VDV V IR R V T QY FIY+ L
Sbjct: 228 VHCSAGVGRTGTFIVIDAMMAMMHAEQKVDVFEFVSRIRNQRPQMVQTDMQYTFIYQALL 287
Query: 367 VY 368
Y
Sbjct: 288 EY 289
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 112/242 (46%), Gaps = 34/242 (14%)
Query: 127 IFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYL 186
I A F G + ++ ++IA Q PL +T+EDFWRMIW +S I+M+T + E +KC Y
Sbjct: 377 INASFIDGYR-QKDYFIATQGPLAHTVEDFWRMIWEWKSHTIVMLTEVQEREQDKCYQYW 435
Query: 187 PPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYV 246
P + G+ I +K + SE + DF +TL + + R+
Sbjct: 436 PTEGSV----THGEITIEIKNDTL---------SEAISIR----DFLVTLNQPQARQGEQ 478
Query: 247 ISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLV 306
+ R + + WP G+P E +I LI A + G P+
Sbjct: 479 V-------------RVVRQFHFHGWPEIGIPAEGKGMID-LIAAVQKQQQQTGNH--PIT 522
Query: 307 IHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLN 366
+HCS G GRTGT +A ++ + +DV + V ++R R V T +QY F Y+V+
Sbjct: 523 VHCSAGAGRTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLEQYEFCYKVVQ 582
Query: 367 VY 368
+
Sbjct: 583 DF 584
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 12 DKNRYANVIPIPETRVRLCS-GGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIE 70
+KNRY N++P +RV L G SD YINA+Y+ G K + KF IA Q P Q T+
Sbjct: 56 EKNRYPNILPNDHSRVILSQLDGIPCSD---YINASYIDGYKEKNKF-IAAQGPKQETVN 111
Query: 71 DFWRMIWTHQSKVILMITALFENSGPK 97
DFWRM+W +S I+M+T L E K
Sbjct: 112 DFWRMVWEQKSATIVMLTNLKERKEEK 138
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P K R +IP RV L + + DYINA+++ G + ++ ++IA Q PL +
Sbjct: 344 PANMKKARVIQIIPYDFNRVILSM--KRGQEYTDYINASFIDGYR-QKDYFIATQGPLAH 400
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSGPK 97
T+EDFWRMIW +S I+M+T + E K
Sbjct: 401 TVEDFWRMIWEWKSHTIVMLTEVQEREQDK 430
>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2
pdb|2SHP|B Chain B, Tyrosine Phosphatase Shp-2
Length = 525
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 117/253 (46%), Gaps = 40/253 (15%)
Query: 125 SLIFAEFSTGPKGEE--KFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKC 182
++I EF T + K YIA Q LQNT+ DFWRM++ S+VI+M T E KC
Sbjct: 308 NIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKC 367
Query: 183 ADYLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVR 242
Y P L + V ++ R V++ A + D+ + RE++
Sbjct: 368 VKYWPDEYALKEYGV-------MRVRNVKESAAH--------------DYTL----RELK 402
Query: 243 EKYVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREA 302
+S + N E +W+ + WP GVP++ ++ FL E H K + +A
Sbjct: 403 ----LSKVGQGNTERTVWQ----YHFRTWPDHGVPSDPGGVLDFLEE--VHHKQESIMDA 452
Query: 303 GPLVIHCSPGTGRTGTV---LACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYA 359
GP+V+HCS G GRTGT +IR +DVP+ + +R R+G V T QY
Sbjct: 453 GPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYR 512
Query: 360 FIYRVLNVYASKL 372
IY + Y L
Sbjct: 513 SIYMAVQHYIETL 525
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 10 TEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGE--------EKFYIAC 61
++KNRY N++P TRV L G + DYINAN + P+ E +K YIA
Sbjct: 273 NKNKNRYKNILPFDHTRVVLHDG-DPNEPVSDYINANIIM-PEFETKCNNSKPKKSYIAT 330
Query: 62 QAPLQNTIEDFWRMIWTHQSKVILMITALFENSGPK 97
Q LQNT+ DFWRM++ S+VI+M T E K
Sbjct: 331 QGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSK 366
>pdb|2AHS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Receptor Phosphatase Beta
pdb|2AHS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Receptor Phosphatase Beta
Length = 295
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 37/225 (16%)
Query: 142 YIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFGDF 201
YI Q PL T +DFW+M+W I+M+T E KC Y P +
Sbjct: 96 YIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPADQ----------- 144
Query: 202 QITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLET-NLW 260
D L +GD + + V ++ I +I E +
Sbjct: 145 -------------DSL----------YYGDLILQMLSESVLPEWTIREFKICGEEQLDAH 181
Query: 261 RELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVL 320
R + H YT WP GVP SLI F+ R ++ + G AGP V+HCS G GRTGT +
Sbjct: 182 RLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPG--AGPTVVHCSAGVGRTGTFI 239
Query: 321 ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
A D +++ ++ SVD+ V+++R R V T QY ++++ +
Sbjct: 240 ALDRILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYVYLHQCV 284
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 20/126 (15%)
Query: 6 LPPGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPL 65
L P KNRY N++P TRV+L + + DYINA+Y+ G + YI Q PL
Sbjct: 47 LLPENRGKNRYNNILPYDATRVKLSNVDDDPC--SDYINASYIPG-NNFRREYIVTQGPL 103
Query: 66 QNTIEDFWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQS 125
T +DFW+M+W I+M+T EK + C D Y+ A + S
Sbjct: 104 PGTKDDFWKMVWEQNVHNIVMVTQCV--------EKGRVKC---------DHYWPADQDS 146
Query: 126 LIFAEF 131
L + +
Sbjct: 147 LYYGDL 152
>pdb|2H02|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H02|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H04|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I3R|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta
pdb|2I3R|B Chain B, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta
pdb|2I3U|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4G|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With A Sulfamic Acid
(Soaking Experiment)
pdb|2I4H|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain Co-Crystallized With A Sulfamic Acid
Inhibitor
pdb|2I5X|A Chain A, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
pdb|2I5X|B Chain B, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
Length = 313
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 37/225 (16%)
Query: 142 YIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFGDF 201
YI Q PL T +DFW+M+W I+M+T E KC Y P +
Sbjct: 112 YIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPADQ----------- 160
Query: 202 QITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLET-NLW 260
D L +GD + + V ++ I +I E +
Sbjct: 161 -------------DSL----------YYGDLILQMLSESVLPEWTIREFKICGEEQLDAH 197
Query: 261 RELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVL 320
R + H YT WP GVP SLI F+ R ++ + G AGP V+HCS G GRTGT +
Sbjct: 198 RLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPG--AGPTVVHCSAGVGRTGTFI 255
Query: 321 ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
A D +++ ++ SVD+ V+++R R V T QY ++++ +
Sbjct: 256 ALDRILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYVYLHQCV 300
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 20/126 (15%)
Query: 6 LPPGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPL 65
L P KNRY N++P TRV+L + + DYINA+Y+ G + YI Q PL
Sbjct: 63 LLPENRGKNRYNNILPYDATRVKLSNVDDDPC--SDYINASYIPG-NNFRREYIVTQGPL 119
Query: 66 QNTIEDFWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQS 125
T +DFW+M+W I+M+T EK + C D Y+ A + S
Sbjct: 120 PGTKDDFWKMVWEQNVHNIVMVTQCV--------EKGRVKC---------DHYWPADQDS 162
Query: 126 LIFAEF 131
L + +
Sbjct: 163 LYYGDL 168
>pdb|2FH7|A Chain A, Crystal Structure Of The Phosphatase Domains Of Human Ptp
Sigma
Length = 595
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 109/246 (44%), Gaps = 40/246 (16%)
Query: 120 GAMKQSLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSV 179
G M I A + G + + YIA Q PL T DFWRM+W +S I+M+T L E S
Sbjct: 79 GIMGSDYINANYVDGYR-RQNAYIATQGPLPETFGDFWRMVWEQRSATIVMMTRLEEKSR 137
Query: 180 EKCADYLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKR 239
KC Y P +G Q+TL + + A + C R F +L K
Sbjct: 138 IKCDQYWPNRGT----ETYGFIQVTL--LDTIELATF--------CVRTF-----SLHKN 178
Query: 240 EVREKYVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAG 299
EK RE+ +T WP GVP + +AFL +K
Sbjct: 179 GSSEK----------------REVRQFQFTAWPDHGVPEYPTPFLAFL----RRVKTCNP 218
Query: 300 REAGPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYA 359
+AGP+V+HCS G GRTG + D ++ + ++VDV V +R R V T QY+
Sbjct: 219 PDAGPIVVHCSAGVGRTGCFIVIDAMLERIKPEKTVDVYGHVTLMRSQRNYMVQTEDQYS 278
Query: 360 FIYRVL 365
FI+ L
Sbjct: 279 FIHEAL 284
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 102/244 (41%), Gaps = 38/244 (15%)
Query: 120 GAMKQSLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSV 179
G I A F G + ++K YIA Q PL T EDFWRM+W + S +++M+T L E
Sbjct: 368 GVEGSDYINASFIDGYR-QQKAYIATQGPLAETTEDFWRMLWENNSTIVVMLTKLREMGR 426
Query: 180 EKCADYLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKR 239
EKC Y P +Q + V+ A+Y P
Sbjct: 427 EKCHQYWPAERS-------ARYQYFV----VDPMAEYNMP-------------------- 455
Query: 240 EVREKYVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAG 299
+Y++ ++ + R + +T+WP GVP I F+ + H
Sbjct: 456 ----QYILREFKVTDARDGQSRTVRQFQFTDWPEQGVPKSGEGFIDFI--GQVHKTKEQF 509
Query: 300 REAGPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYA 359
+ GP+ +HCS G GRTG + I++ VD+ + V +R R V T +Y
Sbjct: 510 GQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKMLRTQRPAMVQTEDEYQ 569
Query: 360 FIYR 363
F Y+
Sbjct: 570 FCYQ 573
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P + KNR N++P TRV C + DYINA+++ G + ++K YIA Q PL
Sbjct: 342 PCNKFKNRLVNIMPYESTRV--CLQPIRGVEGSDYINASFIDGYR-QQKAYIATQGPLAE 398
Query: 68 TIEDFWRMIWTHQSKVILMITALFE 92
T EDFWRM+W + S +++M+T L E
Sbjct: 399 TTEDFWRMLWENNSTIVVMLTKLRE 423
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 60/110 (54%), Gaps = 10/110 (9%)
Query: 13 KNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIEDF 72
KNRYANVI +RV + E S DYINANYV G + + YIA Q PL T DF
Sbjct: 58 KNRYANVIAYDHSRV-ILQPIEGIMGS-DYINANYVDGYR-RQNAYIATQGPLPETFGDF 114
Query: 73 WRMIWTHQSKVILMITALFENSGPKGEEKF-------YIACQAPLQNTIE 115
WRM+W +S I+M+T L E S K ++ + Y Q L +TIE
Sbjct: 115 WRMVWEQRSATIVMMTRLEEKSRIKCDQYWPNRGTETYGFIQVTLLDTIE 164
>pdb|2H03|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2HC1|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta.
pdb|2HC2|A Chain A, Engineered Protein Tyrosine Phosphatase Beta Catalytic
Domain
Length = 291
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 37/225 (16%)
Query: 142 YIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFGDF 201
YI Q PL T +DFW+M+W I+M+T E KC Y P +
Sbjct: 93 YIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPADQ----------- 141
Query: 202 QITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLET-NLW 260
D L +GD + + V ++ I +I E +
Sbjct: 142 -------------DSL----------YYGDLILQMLSESVLPEWTIREFKICGEEQLDAH 178
Query: 261 RELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVL 320
R + H YT WP GVP SLI F+ R ++ + G AGP V+HCS G GRTGT +
Sbjct: 179 RLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPG--AGPTVVHCSAGVGRTGTFI 236
Query: 321 ACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
A D +++ ++ SVD+ V+++R R V T QY ++++ +
Sbjct: 237 ALDRILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYVYLHQCV 281
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 6 LPPGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPL 65
L P KNRY N++P TRV+L G DYINA+Y+ G + YI Q PL
Sbjct: 49 LLPENRGKNRYNNILPYDATRVKLSGGS-------DYINASYIPGNNFRRE-YIVTQGPL 100
Query: 66 QNTIEDFWRMIWTHQSKVILMITALFENSGPK 97
T +DFW+M+W I+M+T E K
Sbjct: 101 PGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVK 132
>pdb|1LAR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
pdb|1LAR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
Length = 575
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 101/244 (41%), Gaps = 38/244 (15%)
Query: 120 GAMKQSLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSV 179
G I A F G + ++K YIA Q PL + EDFWRM+W H S +I+M+T L E
Sbjct: 356 GVEGSDYINASFLDGYR-QQKAYIATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGR 414
Query: 180 EKCADYLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKR 239
EKC Y P +Q + V+ A+Y P
Sbjct: 415 EKCHQYWPAERS-------ARYQYFV----VDPMAEYNMP-------------------- 443
Query: 240 EVREKYVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAG 299
+Y++ ++ + R + +T+WP GVP I F+ + H
Sbjct: 444 ----QYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFI--GQVHKTKEQF 497
Query: 300 REAGPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYA 359
+ GP+ +HCS G GRTG + I++ VD+ + V +R R V T QY
Sbjct: 498 GQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQ 557
Query: 360 FIYR 363
YR
Sbjct: 558 LCYR 561
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 99/228 (43%), Gaps = 39/228 (17%)
Query: 138 EEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRV 197
++ YIA Q PL T+ DFWRM+W ++ ++M+T L E S KC Y P
Sbjct: 84 KQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWP---------- 133
Query: 198 FGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLET 257
R E C G Q+TL Y + + + +
Sbjct: 134 ---------ARGTETC----------------GLIQVTLLDTVELATYTVRTFALHKSGS 168
Query: 258 NLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTG 317
+ REL + WP GVP + ++AFL +K +AGP+V+HCS G GRTG
Sbjct: 169 SEKRELRQFQFMAWPDHGVPEYPTPILAFL----RRVKACNPLDAGPMVVHCSAGVGRTG 224
Query: 318 TVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
+ D ++ + ++VD+ V +R R V T QY FI+ L
Sbjct: 225 CFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEAL 272
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P + KNR N++P TRV C + DYINA+++ G + ++K YIA Q PL
Sbjct: 330 PCNKFKNRLVNIMPYELTRV--CLQPIRGVEGSDYINASFLDGYR-QQKAYIATQGPLAE 386
Query: 68 TIEDFWRMIWTHQSKVILMITALFE 92
+ EDFWRM+W H S +I+M+T L E
Sbjct: 387 STEDFWRMLWEHNSTIIVMLTKLRE 411
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 13 KNRYANVIPIPETRVRLCS-GGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
KNRYANVI +RV L S G SD YINANY+ G + ++ YIA Q PL T+ D
Sbjct: 46 KNRYANVIAYDHSRVILTSIDGVPGSD---YINANYIDGYR-KQNAYIATQGPLPETMGD 101
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEE 100
FWRM+W ++ ++M+T L E S K ++
Sbjct: 102 FWRMVWEQRTATVVMMTRLEEKSRVKCDQ 130
>pdb|2I75|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase N4
(Ptpn4)
Length = 320
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 100/228 (43%), Gaps = 39/228 (17%)
Query: 142 YIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFGDF 201
YIACQ PL +T DFW+M W S +++M+T E KC Y P
Sbjct: 115 YIACQGPLPHTCTDFWQMTWEQGSSMVVMLTTQVERGRVKCHQYWP-------------- 160
Query: 202 QITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLWR 261
E + Y G +Q+T E Y+ + + N E N R
Sbjct: 161 -------EPTGSSSY-------------GCYQVTCHSEEGNTAYIFRKMTLFNQEKNESR 200
Query: 262 ELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLA 321
LT + Y WP GVP++ S + F+ R AG+E P+V+HCS G GRTG ++
Sbjct: 201 PLTQIQYIAWPDHGVPDDSSDFLDFVCHVR---NKRAGKEE-PVVVHCSAGIGRTGVLIT 256
Query: 322 CDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYR-VLNVY 368
+ + E ++ V +V +R RA + T QY F+ +L VY
Sbjct: 257 METAMCLIECNQPVYPLDIVRTMRDQRAMMIQTPSQYRFVCEAILKVY 304
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKF---YIACQAP 64
P KNRY ++ P TRV L +EDYINANY+ YIACQ P
Sbjct: 69 PQNISKNRYRDISPYDATRVIL-------KGNEDYINANYINMEIPSSSIINQYIACQGP 121
Query: 65 LQNTIEDFWRMIWTHQSKVILMITALFE 92
L +T DFW+M W S +++M+T E
Sbjct: 122 LPHTCTDFWQMTWEQGSSMVVMLTTQVE 149
>pdb|2G59|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
pdb|2G59|B Chain B, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
Length = 297
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 107/237 (45%), Gaps = 44/237 (18%)
Query: 142 YIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFGDF 201
YIA Q PL T DFW+M+ +S++I+M+T E KC Y P +E
Sbjct: 96 YIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWPFTE----------- 144
Query: 202 QITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLWR 261
E A +GD + + E ++ + +I + +
Sbjct: 145 ---------EPIA--------------YGDITVEMISEEEQDDWACRHFRINYADE--MQ 179
Query: 262 ELTHVWYTNWPTTGVP--NEESSLIAFLIEARAHM-KGAAGREAGPLVIHCSPGTGRTGT 318
++ H YT WP GVP N S++ F+ HM + A + GP++IHCS G GRTGT
Sbjct: 180 DVMHFNYTAWPDHGVPTANAAESILQFV-----HMVRQQATKSKGPMIIHCSAGVGRTGT 234
Query: 319 VLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLNVYASKLTGG 375
+A D L++H VD+ +V +R R V T +QY FI++ + + K G
Sbjct: 235 FIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCVQLMWMKKKEG 291
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 13 KNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIEDF 72
KNRY N++P +RVRL S E + DYINANY+ G ++ YIA Q PL T DF
Sbjct: 54 KNRYTNILPYDFSRVRLVSMNE--EEGADYINANYIPGYNSPQE-YIATQGPLPETRNDF 110
Query: 73 WRMIWTHQSKVILMIT 88
W+M+ +S++I+M+T
Sbjct: 111 WKMVLQQKSQIIVMLT 126
>pdb|2GJT|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptpro
pdb|2GJT|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptpro
Length = 295
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 105/229 (45%), Gaps = 44/229 (19%)
Query: 142 YIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFGDF 201
YIA Q PL T DFW+M+ +S++I+M+T E KC Y P +E
Sbjct: 94 YIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWPFTE----------- 142
Query: 202 QITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLWR 261
E A +GD + + E ++ + +I + +
Sbjct: 143 ---------EPIA--------------YGDITVEMISEEEQDDWACRHFRINYADE--MQ 177
Query: 262 ELTHVWYTNWPTTGVP--NEESSLIAFLIEARAHM-KGAAGREAGPLVIHCSPGTGRTGT 318
++ H YT WP GVP N S++ F+ HM + A + GP++IHCS G GRTGT
Sbjct: 178 DVMHFNYTAWPDHGVPTANAAESILQFV-----HMVRQQATKSKGPMIIHCSAGVGRTGT 232
Query: 319 VLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLNV 367
+A D L++H VD+ +V +R R V T +QY FI++ + +
Sbjct: 233 FIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCVQL 281
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P KNRY N++P +RVRL S E + DYINANY+ G ++ YIA Q PL
Sbjct: 47 PLNRCKNRYTNILPYDFSRVRLVSMNE--EEGADYINANYIPGYNSPQE-YIATQGPLPE 103
Query: 68 TIEDFWRMIWTHQSKVILMIT 88
T DFW+M+ +S++I+M+T
Sbjct: 104 TRNDFWKMVLQQKSQIIVMLT 124
>pdb|2PI7|A Chain A, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
pdb|2PI7|B Chain B, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
Length = 312
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 111/232 (47%), Gaps = 42/232 (18%)
Query: 142 YIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFGDF 201
YIA Q PL T DFW+M+ +S++I+M+T E KC Y P +E +GD
Sbjct: 103 YIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWPFTE---DPIAYGD- 158
Query: 202 QITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLWR 261
IT++ E+ D+ V+ +F+I+ EV +
Sbjct: 159 -ITVEMLSEEEHTDW-----------VYRNFRISYAD-EV-------------------Q 186
Query: 262 ELTHVWYTNWPTTGVP--NEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTV 319
++ H YT WP GVP N S++ F+ R + + GP++IHCS G GRTGT
Sbjct: 187 DVMHFNYTAWPDHGVPTANAAESILQFVQMVRQ----KSVKSKGPMIIHCSAGVGRTGTF 242
Query: 320 LACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLNVYASK 371
+A D L++H VD+ +V ++R R V T +QY FI++ + + K
Sbjct: 243 IALDWLLQHIRDHEFVDILGLVSDMRSYRMSMVQTEEQYIFIHQCVQLMWQK 294
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P KNRY N++P +RVRL S E + DYINANY+ G ++ YIA Q PL
Sbjct: 56 PMNRCKNRYTNILPYDFSRVRLVSMNE--EEGSDYINANYIPGYNSPQE-YIATQGPLPE 112
Query: 68 TIEDFWRMIWTHQSKVILMIT 88
T DFW+M+ +S++I+M+T
Sbjct: 113 TRNDFWKMVLQQKSQIIVMLT 133
>pdb|2NV5|A Chain A, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|B Chain B, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|C Chain C, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
Length = 299
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 105/229 (45%), Gaps = 41/229 (17%)
Query: 138 EEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRV 197
++ YIA Q L T DFWRMIW +S ++M+T L E S KC Y PS + H
Sbjct: 93 KQNAYIATQGSLPETFGDFWRMIWEQRSATVVMMTKLEERSRVKCDQYW-PSRGTETH-- 149
Query: 198 FGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQI-TLKKREVREKYVISSLQIKNLE 256
G Q+TL + + A Y C R F ++ + +KREVR+
Sbjct: 150 -GLVQVTL--LDTVELATY--------CVRTFALYKNGSSEKREVRQ------------- 185
Query: 257 TNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRT 316
+T WP GVP + +AFL +K +AGP+V+HCS G GRT
Sbjct: 186 ---------FQFTAWPDHGVPEHPTPFLAFL----RRVKTCNPPDAGPMVVHCSAGVGRT 232
Query: 317 GTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
G + D ++ + ++VD+ V +R R V T QY FI+ L
Sbjct: 233 GCFIVIDAMLERIKHEKTVDIYGHVTLMRAQRNYMVQTEDQYIFIHDAL 281
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Query: 13 KNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIEDF 72
KNRYANVI +RV L S E S DY+NANY+ G + ++ YIA Q L T DF
Sbjct: 55 KNRYANVIAYDHSRV-LLSAIEGIPGS-DYVNANYIDGYR-KQNAYIATQGSLPETFGDF 111
Query: 73 WRMIWTHQSKVILMITALFENSGPKGEE 100
WRMIW +S ++M+T L E S K ++
Sbjct: 112 WRMIWEQRSATVVMMTKLEERSRVKCDQ 139
>pdb|2QEP|A Chain A, Crystal Structure Of The D1 Domain Of Ptprn2 (Ia2beta)
pdb|2QEP|B Chain B, Crystal Structure Of The D1 Domain Of Ptprn2 (Ia2beta)
Length = 304
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 105/220 (47%), Gaps = 39/220 (17%)
Query: 142 YIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFGDF 201
YIA Q PL T+ DFW+M+W VI+M+T L EN V +C Y P + ++ +
Sbjct: 103 YIATQGPLPATVADFWQMVWESGCVVIVMLTPLAENGVRQCYHYWPD----EGSNLYHIY 158
Query: 202 QITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLWR 261
++ L + C D+L + S +KNL+TN R
Sbjct: 159 EVNLVSEHI-WCEDFL-----------------------------VRSFYLKNLQTNETR 188
Query: 262 ELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLA 321
+T + +W GVP+ SL+ F R K GR + P+++HCS G GR+GT +
Sbjct: 189 TVTQFHFLSWYDRGVPSSSRSLLDF---RRKVNKCYRGR-SCPIIVHCSDGAGRSGTYVL 244
Query: 322 CDILIRHF-ETSRSVDVPRVVYNIRQCRAGAVATSQQYAF 360
D+++ + ++ +D+ + ++R R G V T +Q+ F
Sbjct: 245 IDMVLNKMAKGAKEIDIAATLEHLRDQRPGMVQTKEQFEF 284
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 13 KNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIEDF 72
KNR V+ +RV L E + DYINA+ + YIA Q PL T+ DF
Sbjct: 60 KNRSLAVLTYDHSRVLL--KAENSHSHSDYINASPIMDHDPRNPAYIATQGPLPATVADF 117
Query: 73 WRMIWTHQSKVILMITALFEN 93
W+M+W VI+M+T L EN
Sbjct: 118 WQMVWESGCVVIVMLTPLAEN 138
>pdb|2I1Y|A Chain A, Crystal Structure Of The Phosphatase Domain Of Human Ptp
Ia-2
pdb|2I1Y|B Chain B, Crystal Structure Of The Phosphatase Domain Of Human Ptp
Ia-2
Length = 301
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 39/220 (17%)
Query: 142 YIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFGDF 201
YIA Q PL +TI DFW+M+W VI+M+T L E+ V++C Y P ++ +
Sbjct: 102 YIATQGPLSHTIADFWQMVWESGCTVIVMLTPLVEDGVKQCDRYWPDEGA----SLYHVY 157
Query: 202 QITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLWR 261
++ L SE + C E +++ S +KN++T R
Sbjct: 158 EVNLV-------------SEHIWC-----------------EDFLVRSFYLKNVQTQETR 187
Query: 262 ELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLA 321
LT + +WP G P L+ F + +G + P+++HCS G GRTGT +
Sbjct: 188 TLTQFHFLSWPAEGTPASTRPLLDFRRKVNKCYRG----RSCPIIVHCSDGAGRTGTYIL 243
Query: 322 CDILI-RHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAF 360
D+++ R + + +D+ + ++R R G V + Q+ F
Sbjct: 244 IDMVLNRMAKGVKEIDIAATLEHVRDQRPGLVRSKDQFEF 283
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 9 GTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNT 68
G KNR+ + +P R++L E++ DYINA+ + YIA Q PL +T
Sbjct: 55 GNIKKNRHPDFLPYDHARIKL--KVESSPSRSDYINASPIIEHDPRMPAYIATQGPLSHT 112
Query: 69 IEDFWRMIWTHQSKVILMITALFENSGPKGEEKFY 103
I DFW+M+W VI+M+T L E+ G K ++++
Sbjct: 113 IADFWQMVWESGCTVIVMLTPLVED-GVKQCDRYW 146
>pdb|3H2X|A Chain A, Crystal Structure Of The Human Lymphoid Tyrosine
Phosphatase Catalytic Domain
Length = 302
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 112/253 (44%), Gaps = 46/253 (18%)
Query: 125 SLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCAD 184
S I A F G G K YIA Q PL T+ DFWRMIW + +I+M +E +KC
Sbjct: 83 SYINANFIKGVYGP-KAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCER 141
Query: 185 YLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREK 244
Y G+ Q+ FG F ++ + + +
Sbjct: 142 YWAEP---------GEMQLE------------------------FGPFSVSCEAEKRKSD 168
Query: 245 YVISSLQIK-NLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAG 303
Y+I +L++K N ET R + Y NWP VP+ ++ + + R + + ++
Sbjct: 169 YIIRTLKVKFNSET---RTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQED----DSV 221
Query: 304 PLVIHCSPGTGRTGTVLACD---ILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAF 360
P+ IHCS G GRTG + A D +L++ + V ++ +R R V T +QY
Sbjct: 222 PICIHCSAGCGRTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYEL 281
Query: 361 IYR-VLNVYASKL 372
+Y VL ++ ++
Sbjct: 282 VYNAVLELFKRQM 294
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P KNRY +++P +RV L + + YINAN+++G G K YIA Q PL
Sbjct: 52 PKNIKKNRYKDILPYDYSRVEL--SLITSDEDSSYINANFIKGVYGP-KAYIATQGPLST 108
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSGPKGE 99
T+ DFWRMIW + +I+M +E K E
Sbjct: 109 TLLDFWRMIWEYSVLIIVMACMEYEMGKKKCE 140
>pdb|2P6X|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Ptpn22
pdb|2P6X|B Chain B, Crystal Structure Of Human Tyrosine Phosphatase Ptpn22
Length = 309
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 112/253 (44%), Gaps = 46/253 (18%)
Query: 125 SLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCAD 184
S I A F G G K YIA Q PL T+ DFWRMIW + +I+M +E +KC
Sbjct: 83 SYINANFIKGVYGP-KAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCER 141
Query: 185 YLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREK 244
Y G+ Q+ FG F ++ + + +
Sbjct: 142 YWAEP---------GEMQLE------------------------FGPFSVSCEAEKRKSD 168
Query: 245 YVISSLQIK-NLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAG 303
Y+I +L++K N ET R + Y NWP VP+ ++ + + R + + ++
Sbjct: 169 YIIRTLKVKFNSET---RTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQED----DSV 221
Query: 304 PLVIHCSPGTGRTGTVLACD---ILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAF 360
P+ IHCS G GRTG + A D +L++ + V ++ +R R V T +QY
Sbjct: 222 PICIHCSAGCGRTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYEL 281
Query: 361 IYR-VLNVYASKL 372
+Y VL ++ ++
Sbjct: 282 VYNAVLELFKRQM 294
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P KNRY +++P +RV L + + YINAN+++G G K YIA Q PL
Sbjct: 52 PKNIKKNRYKDILPYDYSRVEL--SLITSDEDSSYINANFIKGVYGP-KAYIATQGPLST 108
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSGPKGE 99
T+ DFWRMIW + +I+M +E K E
Sbjct: 109 TLLDFWRMIWEYSVLIIVMACMEYEMGKKKCE 140
>pdb|2QCJ|A Chain A, Native Structure Of Lyp
pdb|2QCJ|B Chain B, Native Structure Of Lyp
pdb|2QCT|A Chain A, Structure Of Lyp With Inhibitor I-C11
pdb|2QCT|B Chain B, Structure Of Lyp With Inhibitor I-C11
Length = 313
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 112/253 (44%), Gaps = 46/253 (18%)
Query: 125 SLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCAD 184
S I A F G G K YIA Q PL T+ DFWRMIW + +I+M +E +KC
Sbjct: 102 SYINANFIKGVYGP-KAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCER 160
Query: 185 YLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREK 244
Y G+ Q+ FG F ++ + + +
Sbjct: 161 YWAEP---------GEMQLE------------------------FGPFSVSCEAEKRKSD 187
Query: 245 YVISSLQIK-NLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAG 303
Y+I +L++K N ET R + Y NWP VP+ ++ + + R + + ++
Sbjct: 188 YIIRTLKVKFNSET---RTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQED----DSV 240
Query: 304 PLVIHCSPGTGRTGTVLACD---ILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAF 360
P+ IHCS G GRTG + A D +L++ + V ++ +R R V T +QY
Sbjct: 241 PICIHCSAGCGRTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYEL 300
Query: 361 IYR-VLNVYASKL 372
+Y VL ++ ++
Sbjct: 301 VYNAVLELFKRQM 313
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P KNRY +++P +RV L + + YINAN+++G G K YIA Q PL
Sbjct: 71 PKNIKKNRYKDILPYDYSRVEL--SLITSDEDSSYINANFIKGVYGP-KAYIATQGPLST 127
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSGPKGE 99
T+ DFWRMIW + +I+M +E K E
Sbjct: 128 TLLDFWRMIWEYSVLIIVMACMEYEMGKKKCE 159
>pdb|2B49|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase, Non-Receptor Type 3
Length = 287
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 101/232 (43%), Gaps = 40/232 (17%)
Query: 142 YIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFGDF 201
YIA Q PL +T FW+++W + +I+M+T L E KC Y P
Sbjct: 88 YIATQGPLPHTCAQFWQVVWDQKLSLIVMLTTLTERGRTKCHQYWP-------------- 133
Query: 202 QITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLWR 261
P +V++ G F I + + YV + + N +T
Sbjct: 134 ----------------DPPDVMN----HGGFHIQCQSEDCTIAYVSREMLVTNTQTGEEH 173
Query: 262 ELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLA 321
+TH+ Y WP GVP++ S + F+ R + ++ P+++HCS G GRTG ++
Sbjct: 174 TVTHLQYVAWPDHGVPDDSSDFLEFVNYVR-----SLRVDSEPVLVHCSAGIGRTGVLVT 228
Query: 322 CDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYR-VLNVYASKL 372
+ + E + + +V +R RA V TS QY F+ +L VY L
Sbjct: 229 METAMCLTERNLPIYPLDIVRKMRDQRAMMVQTSSQYKFVCEAILRVYEEGL 280
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 28/142 (19%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKF---YIACQAP 64
P DKNRY +V+P TRV L +EDYINA+YV YIA Q P
Sbjct: 42 PQNLDKNRYKDVLPYDTTRVLL-------QGNEDYINASYVNMEIPAANLVNKYIATQGP 94
Query: 65 LQNTIEDFWRMIWTHQSKVILMITALFENSGPKGEE------------KFYIACQAPLQN 112
L +T FW+++W + +I+M+T L E K + F+I CQ+
Sbjct: 95 LPHTCAQFWQVVWDQKLSLIVMLTTLTERGRTKCHQYWPDPPDVMNHGGFHIQCQS---- 150
Query: 113 TIEDFYFGAMKQSLIFAEFSTG 134
ED + + ++ TG
Sbjct: 151 --EDCTIAYVSREMLVTNTQTG 170
>pdb|2OC3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Protein
Tyrosine Phosphatase Non-Receptor Type 18
Length = 303
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 109/239 (45%), Gaps = 51/239 (21%)
Query: 142 YIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFGDF 201
YIA Q PL +T+ DFWR++W KVILM EN ++C Y +
Sbjct: 105 YIATQGPLPHTLLDFWRLVWEFGVKVILMACREIENGRKRCERY------------WAQE 152
Query: 202 QITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLWR 261
Q L+ G F ITL ++EK++ + ++ L+ +
Sbjct: 153 QEPLQT----------------------GLFCITL----IKEKWLNEDIMLRTLKVTFQK 186
Query: 262 ELTHVW---YTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGT 318
E V+ Y +WP GVP+ ++A + EAR ++G+ PL +HCS G GRTG
Sbjct: 187 ESRSVYQLQYMSWPDRGVPSSPDHMLAMVEEAR-RLQGSGPE---PLCVHCSAGCGRTGV 242
Query: 319 VLACDILIRHFETSRSV----DVPRVVYNIRQCRAGAVATSQQYAFIYR-VLNVYASKL 372
+ D +R ++ + + VV +R+ R AV T +QY F+Y V ++ S L
Sbjct: 243 LCTVD-YVRQLLLTQMIPPDFSLFDVVLKMRKQRPAAVQTEEQYRFLYHTVAQMFCSTL 300
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P KNRY +V+P +TRV L E DYIN N++RG G YIA Q PL +
Sbjct: 58 PENVRKNRYKDVLPYDQTRVILSLLQEEGHS--DYINGNFIRGVDGSLA-YIATQGPLPH 114
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTI 114
T+ DFWR++W KVILM EN G K E+++ Q PLQ +
Sbjct: 115 TLLDFWRLVWEFGVKVILMACREIEN-GRKRCERYWAQEQEPLQTGL 160
>pdb|3BRH|A Chain A, Protein Tyrosine Phosphatase Ptpn-22 (Lyp) Bound To The
Mono-Phosphorylated Lck Active Site Peptide
pdb|3BRH|B Chain B, Protein Tyrosine Phosphatase Ptpn-22 (Lyp) Bound To The
Mono-Phosphorylated Lck Active Site Peptide
Length = 310
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 111/253 (43%), Gaps = 46/253 (18%)
Query: 125 SLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCAD 184
S I A F G G K YIA Q PL T+ DFWRMIW + +I+M +E +KC
Sbjct: 83 SYINANFIKGVYGP-KAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCER 141
Query: 185 YLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREK 244
Y G+ Q+ FG F ++ + + +
Sbjct: 142 YWAEP---------GEMQLE------------------------FGPFSVSCEAEKRKSD 168
Query: 245 YVISSLQIK-NLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAG 303
Y+I +L++K N ET R + Y NWP VP+ ++ + + R + + ++
Sbjct: 169 YIIRTLKVKFNSET---RTIYQFHYKNWPAHDVPSSIDPILELIWDVRCYQED----DSV 221
Query: 304 PLVIHCSPGTGRTGTVLACD---ILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAF 360
P+ IH S G GRTG + A D +L++ + V ++ +R R V T +QY
Sbjct: 222 PICIHSSAGCGRTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYEL 281
Query: 361 IYR-VLNVYASKL 372
+Y VL ++ ++
Sbjct: 282 VYNAVLELFKRQM 294
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P KNRY +++P +RV L + + YINAN+++G G K YIA Q PL
Sbjct: 52 PKNIKKNRYKDILPYDYSRVEL--SLITSDEDSSYINANFIKGVYGP-KAYIATQGPLST 108
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSGPKGE 99
T+ DFWRMIW + +I+M +E K E
Sbjct: 109 TLLDFWRMIWEYSVLIIVMACMEYEMGKKKCE 140
>pdb|3OLR|A Chain A, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OLR|B Chain B, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OLR|C Chain C, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OLR|D Chain D, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OMH|A Chain A, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
pdb|3OMH|B Chain B, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
pdb|3OMH|C Chain C, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
pdb|3OMH|D Chain D, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
Length = 313
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 111/253 (43%), Gaps = 46/253 (18%)
Query: 125 SLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCAD 184
S I A F G G K YIA Q PL T+ DFWRMIW + +I+M +E +KC
Sbjct: 102 SYINANFIKGVYGP-KAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCER 160
Query: 185 YLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREK 244
Y G+ Q+ FG F ++ + + +
Sbjct: 161 YWAEP---------GEMQLE------------------------FGPFSVSCEAEKRKSD 187
Query: 245 YVISSLQIK-NLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAG 303
Y+I +L++K N ET R + Y NWP VP+ ++ + + R + + ++
Sbjct: 188 YIIRTLKVKFNSET---RTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQED----DSV 240
Query: 304 PLVIHCSPGTGRTGTVLACD---ILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAF 360
P+ IH S G GRTG + A D +L++ + V ++ +R R V T +QY
Sbjct: 241 PICIHSSAGCGRTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYEL 300
Query: 361 IYR-VLNVYASKL 372
+Y VL ++ ++
Sbjct: 301 VYNAVLELFKRQM 313
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P KNRY +++P +RV L + + YINAN+++G G K YIA Q PL
Sbjct: 71 PKNIKKNRYKDILPYDYSRVEL--SLITSDEDSSYINANFIKGVYGP-KAYIATQGPLST 127
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSGPKGE 99
T+ DFWRMIW + +I+M +E K E
Sbjct: 128 TLLDFWRMIWEYSVLIIVMACMEYEMGKKKCE 159
>pdb|4AZ1|A Chain A, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
pdb|4AZ1|B Chain B, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
Length = 302
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 94/226 (41%), Gaps = 33/226 (14%)
Query: 142 YIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFGDF 201
++ACQAP+ I DF M++ + +++M+T L E K Y P V G+
Sbjct: 90 FVACQAPVVQGIPDFLAMLYEKKISLVIMVTKLEEGGFVKADRYWPEERGSGSIAVSGNC 149
Query: 202 QITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLWR 261
+T+ + D EV D ++ + I + E K+
Sbjct: 150 GLTISE-------DPGKAYEVEDELKITRRYLILQRADEPPHKF---------------- 186
Query: 262 ELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLA 321
T V YT WP G+P +SL A L + P+V+HCS G GRTGT++
Sbjct: 187 --TQVQYTGWPDHGIPQSATSLEALLTNVKNSPTTV------PVVVHCSAGIGRTGTLIG 238
Query: 322 CDILIRHFETSRSVD--VPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
+ H E D V VV +R+ R G V +QY IY L
Sbjct: 239 AYAALTHLERGTLTDTTVYDVVSAMRRQRFGMVQRMEQYFVIYLTL 284
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 13 KNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIEDF 72
KNRY +++ T + AS + YIN N + + ++ACQAP+ I DF
Sbjct: 48 KNRYLDILANEATLYPQVTDAPGAS-TPYYINGNLIDLDLPHK--FVACQAPVVQGIPDF 104
Query: 73 WRMIWTHQSKVILMITALFENSGPKGE 99
M++ + +++M+T L E K +
Sbjct: 105 LAMLYEKKISLVIMVTKLEEGGFVKAD 131
>pdb|3M4U|A Chain A, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
pdb|3M4U|B Chain B, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
Length = 306
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 91/227 (40%), Gaps = 40/227 (17%)
Query: 142 YIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFGDF 201
++ACQAP+ + DF + + +++M+T L E V K Y P E
Sbjct: 92 FVACQAPVPQGVPDFLETLSEKKVDLVVMLTKLREGGVLKAERYWPEEE----------- 140
Query: 202 QITLKKREVEKCADYLPPSEVLDCHRVFGD----FQITLKKREVREKYVISSLQIKNLET 257
E + P D +V D +++ + VR VI ++
Sbjct: 141 ---------EDSLSF--PESGHDAIKVTRDAEASYEVDAELDIVRRPLVI------HVPG 183
Query: 258 NLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTG 317
+ V Y WP GVP +S L + +K P+++HCS G GRTG
Sbjct: 184 KPMHRVLQVQYVGWPDHGVPESAASFDELL----SVIKNCV--TTSPILVHCSAGIGRTG 237
Query: 318 TVLACDILIRHFETSRSVD--VPRVVYNIRQCRAGAVATSQQYAFIY 362
T++ + H E D V +V ++Q R G V +QYA IY
Sbjct: 238 TLIGAYAALLHIERGILTDSTVYSIVAAMKQKRFGMVQRLEQYAVIY 284
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 13 KNRYANVIPIPETRVR-LCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
KNRY +++ ET + A YIN N + ++ACQAP+ + D
Sbjct: 48 KNRYLDILANEETIYPPVLKAVGAQPGRYPYINGNLID--LDLPHTFVACQAPVPQGVPD 105
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGE 99
F + + +++M+T L E K E
Sbjct: 106 FLETLSEKKVDLVVMLTKLREGGVLKAE 133
>pdb|2I6I|A Chain A, Crystal Structures Of The Archaeal Sulfolobus Ptp-Fold
Phosphatase
pdb|2I6J|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Phosphate Ion
pdb|2I6M|A Chain A, Crystal Structure Of The Complexes Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Tungstate
pdb|3RO1|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Terpyridine
Platinum(Ii)
Length = 161
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 272 PTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLACDILIRHFET 331
P GVP++ L MK + G LV HC G GRTGT+LA +++
Sbjct: 68 PDGGVPSDSQFLTI--------MKWLLSEKEGNLV-HCVGGIGRTGTILASYLIL----- 113
Query: 332 SRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLNVYASKL 372
+ ++V + +R R GAV T +Q F+ RV + S L
Sbjct: 114 TEGLEVESAIDEVRLVRPGAVQTYEQEMFLLRVEGMRKSWL 154
>pdb|1OHC|A Chain A, Structure Of The Proline Directed Phosphatase Cdc14
pdb|1OHD|A Chain A, Structure Of Cdc14 In Complex With Tungstate
Length = 348
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 303 GPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
G + +HC G GRTGT++AC I+ +H+ + + + V R CR G+V QQ +
Sbjct: 270 GAIAVHCKAGLGRTGTLIACYIM-KHYRMTAAETIAWV----RICRPGSVIGPQQQFLVM 324
Query: 363 RVLNVY 368
+ N++
Sbjct: 325 KQTNLW 330
>pdb|2DXP|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Phosphopeptides
A-(P)y-R
pdb|2I6O|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-fold Phosphatase With Phosphopeptides
N-g-(p)y-k-n
pdb|2I6P|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-fold Phosphatase With Pnpp
Length = 161
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 272 PTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLACDILIRHFET 331
P GVP++ L MK + G LV H G GRTGT+LA +++
Sbjct: 68 PDGGVPSDSQFLTI--------MKWLLSEKEGNLV-HSVGGIGRTGTILASYLIL----- 113
Query: 332 SRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLNVYASKL 372
+ ++V + +R R GAV T +Q F+ RV + S L
Sbjct: 114 TEGLEVESAIDEVRLVRPGAVQTYEQEMFLLRVEGMRKSWL 154
>pdb|1OHE|A Chain A, Structure Of Cdc14b Phosphatase With A Peptide Ligand
Length = 348
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 303 GPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
G + +H G GRTGT++AC I+ +H+ + + + V R CR G+V QQ +
Sbjct: 270 GAIAVHSKAGLGRTGTLIACYIM-KHYRMTAAETIAWV----RICRPGSVIGPQQQFLVM 324
Query: 363 RVLNVY 368
+ N++
Sbjct: 325 KQTNLW 330
>pdb|3BM8|A Chain A, Crystal Structure Of Yoph Mutant D356a Complexed With
Irreversible Inhibitor Pvsn
Length = 305
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 72/193 (37%), Gaps = 46/193 (23%)
Query: 143 IACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCA--DYLPPSEVLDCHRVFGD 200
IACQ PLQ+ +E +RM+ +++ V+ ++ + E + ++ DY S +G
Sbjct: 94 IACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSG------TYGS 147
Query: 201 FQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLW 260
+ K + D + D TL RE +K +
Sbjct: 148 ITVESKMTQQVGLGDG-----------IMADM-YTLTIREAGQKTI-------------- 181
Query: 261 RELTHVWYTNWPT-TGVPNEESSLIAFLIEARAHMKGAAGREAGPL----------VIHC 309
+ V NWP T V +E + +A L++ A K G VIHC
Sbjct: 182 -SVPVVHVGNWPAQTAVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHC 240
Query: 310 SPGTGRTGTVLAC 322
G GRT ++
Sbjct: 241 RAGVGRTAQLIGA 253
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 43 INANYVRGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFE 92
+NANY++ G + IACQ PLQ+ +E +RM+ +++ V+ ++ + E
Sbjct: 81 LNANYIQ--VGNTRT-IACQYPLQSQLESHFRMLAENRTPVLAVLASSSE 127
>pdb|1PA9|A Chain A, Yersinia Protein-Tyrosine Phosphatase Complexed With Pncs
(Yop51,Pasteurella X,Ptpase,Yop51delta162) (Catalytic
Domain, Residues 163-468) Mutant With Cys 235 Replaced
By Arg (C235r)
Length = 284
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 72/193 (37%), Gaps = 46/193 (23%)
Query: 143 IACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCA--DYLPPSEVLDCHRVFGD 200
IACQ PLQ+ +E +RM+ +++ V+ ++ + E + ++ DY S +G
Sbjct: 73 IACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSG------TYGS 126
Query: 201 FQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLW 260
+ K + D + D TL RE +K +
Sbjct: 127 ITVESKMTQQVGLGDG-----------IMADM-YTLTIREAGQKTI-------------- 160
Query: 261 RELTHVWYTNWP-TTGVPNEESSLIAFLIEARAHMKGAAGREAGPL----------VIHC 309
+ V NWP T V +E + +A L++ A K G VIHC
Sbjct: 161 -SVPVVHVGNWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHC 219
Query: 310 SPGTGRTGTVLAC 322
G GRT ++
Sbjct: 220 RAGVGRTAQLIGA 232
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 43 INANYVRGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFE 92
+NANY++ G + IACQ PLQ+ +E +RM+ +++ V+ ++ + E
Sbjct: 60 LNANYIQ--VGNTR-TIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE 106
>pdb|1YPT|A Chain A, Crystal Structure Of Yersinia Protein Tyrosine Phosphatase
At 2.5 Angstroms And The Complex With Tungstate
pdb|1YPT|B Chain B, Crystal Structure Of Yersinia Protein Tyrosine Phosphatase
At 2.5 Angstroms And The Complex With Tungstate
pdb|3BLU|A Chain A, Crystal Structure Yoph Complexed With Inhibitor Pvs
pdb|3BLT|A Chain A, Crystal Structures Of Yoph Complexed With Pvsn And Pvs,
Inhibitors Of Yoph Which Co-Valent Bind To Cys Of Active
Site
Length = 305
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 72/193 (37%), Gaps = 46/193 (23%)
Query: 143 IACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCA--DYLPPSEVLDCHRVFGD 200
IACQ PLQ+ +E +RM+ +++ V+ ++ + E + ++ DY S +G
Sbjct: 94 IACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSG------TYGS 147
Query: 201 FQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLW 260
+ K + D + D TL RE +K +
Sbjct: 148 ITVESKMTQQVGLGDG-----------IMADM-YTLTIREAGQKTI-------------- 181
Query: 261 RELTHVWYTNWP-TTGVPNEESSLIAFLIEARAHMKGAAGREAGPL----------VIHC 309
+ V NWP T V +E + +A L++ A K G VIHC
Sbjct: 182 -SVPVVHVGNWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHC 240
Query: 310 SPGTGRTGTVLAC 322
G GRT ++
Sbjct: 241 RAGVGRTAQLIGA 253
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 43 INANYVRGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFE 92
+NANY++ G + IACQ PLQ+ +E +RM+ +++ V+ ++ + E
Sbjct: 81 LNANYIQ--VGNTRT-IACQYPLQSQLESHFRMLAENRTPVLAVLASSSE 127
>pdb|1QZ0|A Chain A, Crystal Structure Of The Yersinia Pestis Phosphatase Yoph
In Complex With A Phosphotyrosyl Mimetic-Containing
Hexapeptide
pdb|1QZ0|B Chain B, Crystal Structure Of The Yersinia Pestis Phosphatase Yoph
In Complex With A Phosphotyrosyl Mimetic-Containing
Hexapeptide
pdb|2I42|A Chain A, Crystal Structure Of Yersinia Protein Tyrosine Phosphatase
Complexed With Vanadate, A Transition State Analogue
pdb|1YTN|A Chain A, Hydrolase
pdb|1YTW|A Chain A, Yersinia Ptpase Complexed With Tungstate
pdb|2Y2F|A Chain A, Crystal Structure Of Yersinia Pestis Yoph In Complex With
An Aminooxy-Containing Platform Compound For Inhibitor
Design
pdb|2YDU|A Chain A, Crystal Structure Of Yoph In Complex With
3-(1,1-Dioxido-3-Oxoisothiazolidin-5-Yl)benzaldeyde
Length = 306
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 72/193 (37%), Gaps = 46/193 (23%)
Query: 143 IACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCA--DYLPPSEVLDCHRVFGD 200
IACQ PLQ+ +E +RM+ +++ V+ ++ + E + ++ DY S +G
Sbjct: 95 IACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSG------TYGS 148
Query: 201 FQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLW 260
+ K + D + D TL RE +K +
Sbjct: 149 ITVESKMTQQVGLGDG-----------IMADM-YTLTIREAGQKTI-------------- 182
Query: 261 RELTHVWYTNWP-TTGVPNEESSLIAFLIEARAHMKGAAGREAGPL----------VIHC 309
+ V NWP T V +E + +A L++ A K G VIHC
Sbjct: 183 -SVPVVHVGNWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHC 241
Query: 310 SPGTGRTGTVLAC 322
G GRT ++
Sbjct: 242 RAGVGRTAQLIGA 254
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 43 INANYVRGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFE 92
+NANY++ G + IACQ PLQ+ +E +RM+ +++ V+ ++ + E
Sbjct: 82 LNANYIQ--VGNTR-TIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE 128
>pdb|3U96|A Chain A, Crystal Structure Of Yophq357f(Catalytic Domain, Residues
163-468) In Complex With Pncs
pdb|3U96|B Chain B, Crystal Structure Of Yophq357f(Catalytic Domain, Residues
163-468) In Complex With Pncs
Length = 306
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 72/193 (37%), Gaps = 46/193 (23%)
Query: 143 IACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCA--DYLPPSEVLDCHRVFGD 200
IACQ PLQ+ +E +RM+ +++ V+ ++ + E + ++ DY S +G
Sbjct: 95 IACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSG------TYGS 148
Query: 201 FQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLW 260
+ K + D + D TL RE +K +
Sbjct: 149 ITVESKMTQQVGLGDG-----------IMADM-YTLTIREAGQKTI-------------- 182
Query: 261 RELTHVWYTNWPT-TGVPNEESSLIAFLIEARAHMKGAAGREAGPL----------VIHC 309
+ V NWP T V +E + +A L++ A K G VIHC
Sbjct: 183 -SVPVVHVGNWPDFTAVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHC 241
Query: 310 SPGTGRTGTVLAC 322
G GRT ++
Sbjct: 242 RAGVGRTAQLIGA 254
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 43 INANYVRGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFE 92
+NANY++ G + IACQ PLQ+ +E +RM+ +++ V+ ++ + E
Sbjct: 82 LNANYIQ--VGNTR-TIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE 128
>pdb|1XXV|A Chain A, Yersinia Yoph (Residues 163-468) Binds
Phosphonodifluoromethyl-Phe Containing Hexapeptide At
Two Sites
pdb|1XXV|B Chain B, Yersinia Yoph (Residues 163-468) Binds
Phosphonodifluoromethyl-Phe Containing Hexapeptide At
Two Sites
Length = 306
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 72/193 (37%), Gaps = 46/193 (23%)
Query: 143 IACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCA--DYLPPSEVLDCHRVFGD 200
IACQ PLQ+ +E +RM+ +++ V+ ++ + E + ++ DY S +G
Sbjct: 95 IACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSG------TYGS 148
Query: 201 FQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLW 260
+ K + D + D TL RE +K +
Sbjct: 149 ITVESKMTQQVGLGDG-----------IMADM-YTLTIREAGQKTI-------------- 182
Query: 261 RELTHVWYTNWP-TTGVPNEESSLIAFLIEARAHMKGAAGREAGPL----------VIHC 309
+ V NWP T V +E + +A L++ A K G VIHC
Sbjct: 183 -SVPVVHVGNWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHC 241
Query: 310 SPGTGRTGTVLAC 322
G GRT ++
Sbjct: 242 RAGVGRTAQLIGA 254
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 43 INANYVRGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFE 92
+NANY++ G + IACQ PLQ+ +E +RM+ +++ V+ ++ + E
Sbjct: 82 LNANYIQ--VGNTRT-IACQYPLQSQLESHFRMLAENRTPVLAVLASSSE 128
>pdb|4ERC|A Chain A, Structure Of Vhz Bound To Metavanadate
pdb|4ERC|B Chain B, Structure Of Vhz Bound To Metavanadate
Length = 150
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 307 IHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYR 363
+HC+ G GRTGT+LAC + R + + IR+ R G++ T +Q +++
Sbjct: 93 VHCALGFGRTGTMLAC-----YLVKERGLAAGDAIAEIRRLRPGSIETYEQEKAVFQ 144
>pdb|2IMG|A Chain A, Crystal Structure Of Dual Specificity Protein Phosphatase
23 From Homo Sapiens In Complex With Ligand Malate Ion
Length = 151
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 307 IHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYR 363
+HC+ G GRTGT LAC + R + + IR+ R G++ T +Q +++
Sbjct: 94 VHCALGFGRTGTXLAC-----YLVKERGLAAGDAIAEIRRLRPGSIETYEQEKAVFQ 145
>pdb|3F99|A Chain A, W354f Yersinia Enterocolitica Ptpase Apo Form
pdb|3F9A|A Chain A, W354f Yersinia Enterocolitica Ptpase Complexed With
Tungstate
pdb|3F9B|A Chain A, W354f Yersinia Enterocolitica Ptpase Complexed With
Divanadate
Length = 306
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 43 INANYVRGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFE 92
+NANY++ G + IACQ PLQ+ +E +RM+ +++ V+ ++ + E
Sbjct: 82 LNANYIQ--VGNTR-TIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE 128
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 72/193 (37%), Gaps = 46/193 (23%)
Query: 143 IACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCA--DYLPPSEVLDCHRVFGD 200
IACQ PLQ+ +E +RM+ +++ V+ ++ + E + ++ DY S +G
Sbjct: 95 IACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSG------TYGS 148
Query: 201 FQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLW 260
+ K + D + D TL RE +K +
Sbjct: 149 ITVESKMTQQVGLGDG-----------IMADM-YTLTIREAGQKTI-------------- 182
Query: 261 RELTHVWYTNWP-TTGVPNEESSLIAFLIEARAHMKGAAGREAGPL----------VIHC 309
+ V N+P T V +E + +A L++ A K G VIHC
Sbjct: 183 -SVPVVHVGNFPDQTAVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHC 241
Query: 310 SPGTGRTGTVLAC 322
G GRT ++
Sbjct: 242 RAGVGRTAQLIGA 254
>pdb|1XXP|A Chain A, Yersinia Yoph (Residues 163-468) C403s Binds
Phosphotyrosyl Peptide At Two Sites
pdb|1XXP|B Chain B, Yersinia Yoph (Residues 163-468) C403s Binds
Phosphotyrosyl Peptide At Two Sites
Length = 306
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 43 INANYVRGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFE 92
+NANY++ G + IACQ PLQ+ +E +RM+ +++ V+ ++ + E
Sbjct: 82 LNANYIQ--VGNTRT-IACQYPLQSQLESHFRMLAENRTPVLAVLASSSE 128
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 71/193 (36%), Gaps = 46/193 (23%)
Query: 143 IACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCA--DYLPPSEVLDCHRVFGD 200
IACQ PLQ+ +E +RM+ +++ V+ ++ + E + ++ DY S +G
Sbjct: 95 IACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSG------TYGS 148
Query: 201 FQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLW 260
+ K + D + D TL RE +K +
Sbjct: 149 ITVESKMTQQVGLGDG-----------IMADM-YTLTIREAGQKTI-------------- 182
Query: 261 RELTHVWYTNWP-TTGVPNEESSLIAFLIEARAHMKGAAGREAGPL----------VIHC 309
+ V NWP T V +E + +A L++ A K G VIH
Sbjct: 183 -SVPVVHVGNWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHS 241
Query: 310 SPGTGRTGTVLAC 322
G GRT ++
Sbjct: 242 RAGVGRTAQLIGA 254
>pdb|1LYV|A Chain A, High-Resolution Structure Of The Catalytically Inactive
Yersinia Tyrosine Phosphatase C403a Mutant In Complex
With Phosphate
Length = 306
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 43 INANYVRGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFE 92
+NANY++ G + IACQ PLQ+ +E +RM+ +++ V+ ++ + E
Sbjct: 82 LNANYIQ--VGNTRT-IACQYPLQSQLESHFRMLAENRTPVLAVLASSSE 128
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 71/193 (36%), Gaps = 46/193 (23%)
Query: 143 IACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCA--DYLPPSEVLDCHRVFGD 200
IACQ PLQ+ +E +RM+ +++ V+ ++ + E + ++ DY S +G
Sbjct: 95 IACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSG------TYGS 148
Query: 201 FQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLW 260
+ K + D + D TL RE +K +
Sbjct: 149 ITVESKMTQQVGLGDG-----------IMADM-YTLTIREAGQKTI-------------- 182
Query: 261 RELTHVWYTNWP-TTGVPNEESSLIAFLIEARAHMKGAAGREAGPL----------VIHC 309
+ V NWP T V +E + +A L++ A K G VIH
Sbjct: 183 -SVPVVHVGNWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHS 241
Query: 310 SPGTGRTGTVLAC 322
G GRT ++
Sbjct: 242 RAGVGRTAQLIGA 254
>pdb|1YTS|A Chain A, A Ligand-Induced Conformational Change In The Yersinia
Protein Tyrosine Phosphatase
Length = 278
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 71/193 (36%), Gaps = 46/193 (23%)
Query: 143 IACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCA--DYLPPSEVLDCHRVFGD 200
IACQ PLQ+ +E +RM+ +++ V+ ++ + E + ++ DY S +G
Sbjct: 67 IACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSG------TYGS 120
Query: 201 FQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLW 260
+ K + D + D TL RE +K +
Sbjct: 121 ITVESKMTQQVGLGDG-----------IMADM-YTLTIREAGQKTI-------------- 154
Query: 261 RELTHVWYTNWP-TTGVPNEESSLIAFLIEARAHMKGAAGREAGPL----------VIHC 309
+ V NWP T V +E + +A L++ A K G VIH
Sbjct: 155 -SVPVVHVGNWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHS 213
Query: 310 SPGTGRTGTVLAC 322
G GRT ++
Sbjct: 214 RAGVGRTAQLIGA 226
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 43 INANYVRGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFE 92
+NANY++ G + IACQ PLQ+ +E +RM+ +++ V+ ++ + E
Sbjct: 54 LNANYIQ--VGNTR-TIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE 100
>pdb|2P4D|A Chain A, Structure-Assisted Discovery Of Variola Major H1
Phosphatase Inhibitors
Length = 172
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 8/113 (7%)
Query: 240 EVREKYVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAG 299
EV+ KYV++ K N + H+ + TT + + AFL
Sbjct: 50 EVKFKYVLNLTXDKYTLPNSNINIIHIPLVDDTTTDISKYFDDVTAFL--------SKCD 101
Query: 300 REAGPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAV 352
+ P+++HC G R+G + + ++ E+S + V ++ R R V
Sbjct: 102 QRNEPVLVHCVAGVNRSGAXILAYLXSKNKESSPXLYFLYVYHSXRDLRGAFV 154
>pdb|1G4U|S Chain S, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
pdb|1G4W|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp
Length = 383
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 270 NWPTTGVPNEESSLIAFLIE--ARAHMKGAAGREAGPL---VIHCSPGTGRTGTVLACDI 324
NWP P + + +L + ++ GA GR + +IHC G GRTGT+ A +
Sbjct: 278 NWPDHQ-PLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALV 336
Query: 325 L 325
L
Sbjct: 337 L 337
>pdb|1WCS|A Chain A, A Mutant Of Trypanosoma Rangeli Sialidase Displaying
Trans- Sialidase Activity
Length = 641
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 233 QITLKKREVREKYVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARA 292
++ +R V E + ++ L T L+HVW TN PT+ P+ +SS +A IE +
Sbjct: 249 RVDYNRRLVYESSDMGKTWVEALGT-----LSHVW-TNSPTSNQPDCQSSFVAVTIEGKR 302
Query: 293 HM 294
M
Sbjct: 303 VM 304
>pdb|2RF6|A Chain A, Crystal Structure Of The Vaccinia Virus Dual-Specificity
Phosphatase Vh1
pdb|3CM3|A Chain A, High Resolution Crystal Structure Of The Vaccinia Virus
Dual-Specificity Phosphatase Vh1
Length = 176
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Query: 240 EVREKYVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAG 299
EV+ KYV++ K N + H+ + TT + + AFL
Sbjct: 54 EVKFKYVLNLTMDKYTLPNSNINIIHIPLVDDTTTDISKYFDDVTAFL--------SKCD 105
Query: 300 REAGPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAV 352
+ P+++H + G R+G ++ ++ ++ E+ + V +++R R V
Sbjct: 106 QRNEPVLVHSAAGVNRSGAMILAYLMSKNKESLPMLYFLYVYHSMRDLRGAFV 158
>pdb|2Q05|A Chain A, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|B Chain B, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|C Chain C, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|D Chain D, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
Length = 195
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 8/113 (7%)
Query: 240 EVREKYVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAG 299
EV+ KYV++ K N + H+ + TT + + AFL
Sbjct: 71 EVKFKYVLNLTXDKYTLPNSNINIIHIPLVDDTTTDISKYFDDVTAFL--------SKCD 122
Query: 300 REAGPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAV 352
+ P+++HC+ G R+G + + ++ E+ + V ++ R R V
Sbjct: 123 QRNEPVLVHCAAGVNRSGAXILAYLXSKNKESLPXLYFLYVYHSXRDLRGAFV 175
>pdb|4HPP|A Chain A, Crystal Structure Of Novel Glutamine Synthase Homolog
Length = 443
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 19 VIPIPETRVRLCSGGEAASDSEDYINANYV 48
++P P +RVR+ G +AA+ + DY++ N V
Sbjct: 68 LLPDPNSRVRVEQGPDAAAPALDYLHGNLV 97
>pdb|2EHH|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
pdb|2EHH|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
pdb|2EHH|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
pdb|2EHH|E Chain E, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
Length = 294
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 325 LIRHFET-SRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLNVYASKLTGGALDSI 380
L HF+T ++ VD+P ++YNI ++ + N+ ASK + +D I
Sbjct: 114 LYEHFKTVAQEVDIPIIIYNIPSRTCVEISVDTMFKLASECENIVASKESTPNMDRI 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,531,341
Number of Sequences: 62578
Number of extensions: 468093
Number of successful extensions: 1662
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 958
Number of HSP's gapped (non-prelim): 404
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)