RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10360
(380 letters)
>gnl|CDD|238006 cd00047, PTPc, Protein tyrosine phosphatases (PTP) catalyze the
dephosphorylation of phosphotyrosine peptides; they
regulate phosphotyrosine levels in signal transduction
pathways. The depth of the active site cleft renders the
enzyme specific for phosphorylated Tyr (pTyr) residues,
instead of pSer or pThr. This family has a distinctive
active site signature motif, HCSAGxGRxG. Characterized
as either transmembrane, receptor-like or
non-transmembrane (soluble) PTPs. Receptor-like PTP
domains tend to occur in two copies in the cytoplasmic
region of the transmembrane proteins, only one copy may
be active.
Length = 231
Score = 214 bits (547), Expect = 4e-68
Identities = 99/354 (27%), Positives = 133/354 (37%), Gaps = 125/354 (35%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
KNRY +++P TRV+L + SD YINA+Y+ G
Sbjct: 1 KKNRYKDILPYDHTRVKLKPDDDEGSD---YINASYIDGYN------------------- 38
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
K YIA Q
Sbjct: 39 ---------------------------PPKAYIATQG----------------------- 48
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
PL NT+EDFWRM+W + VI+M+T L E EKCA Y P
Sbjct: 49 ----------------PLPNTVEDFWRMVWEQKVPVIVMLTELVEKGREKCAQYWP---- 88
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
E +GD +TL E + Y + +L+
Sbjct: 89 ----------------EEEGSL--------------TYGDITVTLVSEEKLDDYTVRTLK 118
Query: 252 IKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSP 311
+ N T R +TH YT WP GVP SL+ L + R +GP+V+HCS
Sbjct: 119 LSNTGTGETRTVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQ---QQPGSGPIVVHCSA 175
Query: 312 GTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
G GRTGT +A DIL++ E VD+ + V +R R G V T +QY F+YR +
Sbjct: 176 GVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMVQTEEQYIFLYRAI 229
>gnl|CDD|214550 smart00194, PTPc, Protein tyrosine phosphatase, catalytic domain.
Length = 259
Score = 213 bits (545), Expect = 2e-67
Identities = 102/354 (28%), Positives = 138/354 (38%), Gaps = 125/354 (35%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
DKNRY +V+P TRV+L SD YINA+Y+ GP G +
Sbjct: 29 DKNRYKDVLPYDHTRVKLKPPPGEGSD---YINASYIDGPNGPKA--------------- 70
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
YIA Q PL +
Sbjct: 71 -------------------------------YIATQGPLPS------------------- 80
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
T+EDFWRM+W + VI+M+T L E EKCA Y P E
Sbjct: 81 --------------------TVEDFWRMVWEQKVTVIVMLTELVEKGREKCAQYWPDEE- 119
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
G+ +GD +TLK E + Y I +L+
Sbjct: 120 -------GEPL-------------------------TYGDITVTLKSVEKVDDYTIRTLE 147
Query: 252 IKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSP 311
+ N + R +TH YTNWP GVP S++ + R GP+V+HCS
Sbjct: 148 VTNTGCSETRTVTHYHYTNWPDHGVPESPESILDLIRAVRKSQS----TSTGPIVVHCSA 203
Query: 312 GTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
G GRTGT +A DIL++ E + VD+ +V +R R G V T +QY F+YR +
Sbjct: 204 GVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQTEEQYIFLYRAI 257
>gnl|CDD|215717 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase.
Length = 233
Score = 201 bits (514), Expect = 3e-63
Identities = 99/354 (27%), Positives = 139/354 (39%), Gaps = 125/354 (35%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
+KNRY +++P TRV+L GG DYINA+Y+ G +
Sbjct: 3 EKNRYKDILPYDHTRVKLTPGG-----PSDYINASYIDGYR------------------- 38
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
+ + +IA Q PL N
Sbjct: 39 ---------------------------KPRAFIATQGPLPN------------------- 52
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
TIEDFWRM+W + I+M+T L E EKC Y P E
Sbjct: 53 --------------------TIEDFWRMVWEQKVTTIVMLTELEEKGREKCDQYWP--EE 90
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
+ +GD +TL K E E+ + Y + + +
Sbjct: 91 EEGSLTYGDISVTLVKEEEEE------------------------------DDYTVRTFE 120
Query: 252 IKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSP 311
+KN + R +TH YT WP GVP SL+ + R K A +GP+V+HCS
Sbjct: 121 LKNGGSEETRTVTHFHYTGWPDHGVPESPKSLLDLI---RKVRKSQADPRSGPIVVHCSA 177
Query: 312 GTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
G GRTGT +A DIL++ E VDV ++V +R R G V T +QY F+Y +
Sbjct: 178 GVGRTGTFIAIDILLQQLEAEGEVDVFQIVKELRSQRPGMVQTEEQYIFLYDAV 231
>gnl|CDD|222923 PHA02738, PHA02738, hypothetical protein; Provisional.
Length = 320
Score = 128 bits (323), Expect = 3e-34
Identities = 73/253 (28%), Positives = 109/253 (43%), Gaps = 44/253 (17%)
Query: 125 SLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCAD 184
I A + G + ++KF I QAP + T DF+RM+W ++I+M+ EN EKC
Sbjct: 76 DYINANYVDGFEYKKKF-ICGQAPTRQTCYDFYRMLWMEHVQIIVMLCKKKENGREKCFP 134
Query: 185 YLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREK 244
Y S+V FG F+IT + E
Sbjct: 135 YW---------------------------------SDVEQGSIRFGKFKITTTQVETHPH 161
Query: 245 YVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMK--------- 295
YV S+L + + T+ + +TH +T WP VP S + F++E R K
Sbjct: 162 YVKSTLLLTD-GTSATQTVTHFNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQI 220
Query: 296 GAAGREAGPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATS 355
G + P+V+HC+ G GRT DI I F+ +V +P +V +IR R ++
Sbjct: 221 GHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIP 280
Query: 356 QQYAFIYRVLNVY 368
QY F YR + Y
Sbjct: 281 FQYFFCYRAVKRY 293
Score = 76.9 bits (189), Expect = 9e-16
Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 16/112 (14%)
Query: 14 NRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIEDFW 73
NRY + + +RV L A + DYINANYV G + ++KF I QAP + T DF+
Sbjct: 53 NRYLDAVCFDHSRVIL----PAERNRGDYINANYVDGFEYKKKF-ICGQAPTRQTCYDFY 107
Query: 74 RMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIE--DFYFGAMK 123
RM+W ++I+M+ EN G EK + P + +E FG K
Sbjct: 108 RMLWMEHVQIIVMLCKKKEN----GREKCF-----PYWSDVEQGSIRFGKFK 150
>gnl|CDD|165113 PHA02746, PHA02746, protein tyrosine phosphatase; Provisional.
Length = 323
Score = 125 bits (315), Expect = 5e-33
Identities = 71/250 (28%), Positives = 112/250 (44%), Gaps = 45/250 (18%)
Query: 124 QSLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCA 183
++ I A F G K K +I Q P ++T EDF+++I H+S+VI+ +T +
Sbjct: 98 ENYIHANFVDGFKEANK-FICAQGPKEDTSEDFFKLISEHESQVIVSLTDI--------- 147
Query: 184 DYLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVRE 243
+ EKC + E D FG F K ++ E
Sbjct: 148 -----------------------DDDDEKCFELWTKEE--DSELAFGRF--VAKILDIIE 180
Query: 244 K--YVISSLQIKNLETNLWRELTHVWYTNWPTTGVPN---EESSLIAFLIEARAHMKGAA 298
+ + + L I + ++ RE+ H W+ +WP G+P E LI + E +A + A
Sbjct: 181 ELSFTKTRLMITDKISDTSREIHHFWFPDWPDNGIPTGMAEFLELINKVNEEQAELIKQA 240
Query: 299 GREA---GPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATS 355
+ GP+V+HCS G GR GT A D + E + V + +V IR+ R +V
Sbjct: 241 DNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLP 300
Query: 356 QQYAFIYRVL 365
+QYAF Y+ L
Sbjct: 301 EQYAFCYKAL 310
Score = 65.0 bits (158), Expect = 9e-12
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 18/100 (18%)
Query: 6 LPPGTEDKNRYANVIPIPETRVRLCSGGEAAS-----------------DSEDYINANYV 48
L KNR+ ++ +RV + + ++E+YI+AN+V
Sbjct: 47 LKKENLKKNRFHDIPCWDHSRVVINAHESLKMFDVGDSDGKKIEVTSEDNAENYIHANFV 106
Query: 49 RGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMIT 88
G K K +I Q P ++T EDF+++I H+S+VI+ +T
Sbjct: 107 DGFKEANK-FICAQGPKEDTSEDFFKLISEHESQVIVSLT 145
>gnl|CDD|165114 PHA02747, PHA02747, protein tyrosine phosphatase; Provisional.
Length = 312
Score = 124 bits (312), Expect = 1e-32
Identities = 61/243 (25%), Positives = 102/243 (41%), Gaps = 41/243 (16%)
Query: 138 EEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRV 197
++K +IA Q P T DFW+ +W +I+M+T + E
Sbjct: 91 DDKKFIATQGPFAETCADFWKAVWQEHCSIIVMLTPTKGTNGE----------------- 133
Query: 198 FGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLET 257
EKC Y +E D + DF+I K VR KY+++ ++I +
Sbjct: 134 -------------EKCYQYWCLNE--DGNIDMEDFRIETLKTSVRAKYILTLIEITDKIL 178
Query: 258 NLWRELTHVWYTNWPTTGVPNEESSLIAFL----IEARAHMKGAAGREA--GPLVIHCSP 311
R+++H + W P++ I F+ I + K ++A P+V+HCS
Sbjct: 179 KDSRKISHFQCSEWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSD 238
Query: 312 GTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFI---YRVLNVY 368
G G+TG A DI + +++ + + IR+ R + Y FI Y VL+ +
Sbjct: 239 GVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFIQPGYEVLHYF 298
Query: 369 ASK 371
SK
Sbjct: 299 LSK 301
>gnl|CDD|165109 PHA02742, PHA02742, protein tyrosine phosphatase; Provisional.
Length = 303
Score = 115 bits (288), Expect = 2e-29
Identities = 64/250 (25%), Positives = 110/250 (44%), Gaps = 41/250 (16%)
Query: 127 IFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYL 186
I A + G + +F I QAPL+ T DFW+ I+ Q +VI+MIT + E+ E C Y
Sbjct: 81 INASYVDGHNAKGRF-ICTQAPLEETALDFWQAIFQDQVRVIVMITKIMEDGKEACYPYW 139
Query: 187 PPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYV 246
P +R G+F+I KK + Y
Sbjct: 140 MP-----------------HERGKA----------------THGEFKIKTKKIKSFRNYA 166
Query: 247 ISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEAR-------AHMKGAAG 299
+++L + + T ++ H Y +WP G+P + + + F++ R +KG
Sbjct: 167 VTNLCLTDTNTGASLDIKHFAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENI 226
Query: 300 REAGPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYA 359
+ P+++HCS G R G A DI I + + + +V ++R+ R ++ QQY
Sbjct: 227 VKEPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQYI 286
Query: 360 FIYRVLNVYA 369
F Y ++ ++A
Sbjct: 287 FCYFIVLIFA 296
Score = 66.6 bits (162), Expect = 2e-12
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 13 KNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIEDF 72
K RY + RV L + +D+INA+YV G + +F I QAPL+ T DF
Sbjct: 55 KCRYPDAPCFDRNRVIL----KIEDGGDDFINASYVDGHNAKGRF-ICTQAPLEETALDF 109
Query: 73 WRMIWTHQSKVILMITALFENSGPKGEEKFY 103
W+ I+ Q +VI+MIT + E G+E Y
Sbjct: 110 WQAIFQDQVRVIVMITKIME----DGKEACY 136
>gnl|CDD|227886 COG5599, PTP2, Protein tyrosine phosphatase [Signal transduction
mechanisms].
Length = 302
Score = 104 bits (261), Expect = 1e-25
Identities = 68/242 (28%), Positives = 104/242 (42%), Gaps = 51/242 (21%)
Query: 136 KGEEKFYIACQAPLQNTIEDFWRMIWTH--QSKVILMITALFENSVEKCADYLPPSEVLD 193
K YIA Q P TI+DFW+M+W + + VI+M+T+L E + EKC Y P D
Sbjct: 88 KTPRGKYIATQGPKPETIDDFWKMVWHNVPNNGVIVMLTSLPEYNREKCDQYWPLG--YD 145
Query: 194 CHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRV-FGDFQITLKKREVREKYVISSLQI 252
+ G I KK E+ + + V +F++T ++ +
Sbjct: 146 DTLIIGLRVIKQKKYEL------------FNDNIVNVHNFELTSINGPPKKIH------- 186
Query: 253 KNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPG 312
H Y NW VP+ S L + H + GP+++HCS G
Sbjct: 187 ------------HFQYINWVDFNVPDIRS-LTEVI-----HSLNDSPVRTGPIIVHCSAG 228
Query: 313 TGRTGTVLACDILIR-------HFETSR-SVD-VPRVVYNIRQCRAGAVATSQQYAFIYR 363
GRTGT +A DIL+R H +T + D + ++V ++R R V Q+ F+Y
Sbjct: 229 VGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLSLRSQRMKMVQNKTQFKFLYD 288
Query: 364 VL 365
Sbjct: 289 AF 290
>gnl|CDD|214649 smart00404, PTPc_motif, Protein tyrosine phosphatase, catalytic
domain motif.
Length = 105
Score = 96.7 bits (241), Expect = 1e-24
Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 262 ELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLA 321
+ H YT WP GVP S++ L + ++ + GP+V+HCS G GRTGT +A
Sbjct: 1 TVKHYHYTGWPDHGVPESPDSILELLRAVKKNLNQSESS--GPVVVHCSAGVGRTGTFVA 58
Query: 322 CDILIRHFET-SRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
DIL++ E + VD+ V +R R G V T +QY F+YR L
Sbjct: 59 IDILLQQLEAEAGEVDIFDTVKELRSQRPGMVQTEEQYLFLYRAL 103
>gnl|CDD|214469 smart00012, PTPc_DSPc, Protein tyrosine phosphatase, catalytic
domain, undefined specificity. Protein tyrosine
phosphatases. Homologues detected by this profile and
not by those of "PTPc" or "DSPc" are predicted to be
protein phosphatases with a similar fold to DSPs and
PTPs, yet with unpredicted specificities.
Length = 105
Score = 96.7 bits (241), Expect = 1e-24
Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 262 ELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLA 321
+ H YT WP GVP S++ L + ++ + GP+V+HCS G GRTGT +A
Sbjct: 1 TVKHYHYTGWPDHGVPESPDSILELLRAVKKNLNQSESS--GPVVVHCSAGVGRTGTFVA 58
Query: 322 CDILIRHFET-SRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
DIL++ E + VD+ V +R R G V T +QY F+YR L
Sbjct: 59 IDILLQQLEAEAGEVDIFDTVKELRSQRPGMVQTEEQYLFLYRAL 103
>gnl|CDD|165107 PHA02740, PHA02740, protein tyrosine phosphatase; Provisional.
Length = 298
Score = 59.6 bits (144), Expect = 5e-10
Identities = 44/252 (17%), Positives = 95/252 (37%), Gaps = 41/252 (16%)
Query: 123 KQSLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKC 182
+ ++ A F G E+K +I ++ + F + + ++ ++I++I+ + +KC
Sbjct: 75 DEKVLDARFVDGYDFEQK-FICIINLCEDACDKFLQALSDNKVQIIVLISRHAD---KKC 130
Query: 183 ADYLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVR 242
F F +LK+ C FQI + ++
Sbjct: 131 ---------------FNQFW-SLKEG----------------CVITSDKFQIETLEIIIK 158
Query: 243 EKYVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHM----KGAA 298
+ ++ L + + + ++++H YT WP G ++ + I F K A
Sbjct: 159 PHFNLTLLSLTD-KFGQAQKISHFQYTAWPADGFSHDPDAFIDFFCNIDDLCADLEKHKA 217
Query: 299 GREAGPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQY 358
+ P++I C G + DI F+ + + + + +RQ + G + Y
Sbjct: 218 DGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDDY 277
Query: 359 AFIYRVLNVYAS 370
F Y ++ Y
Sbjct: 278 VFCYHLIAAYLK 289
Score = 31.5 bits (71), Expect = 0.59
Identities = 13/82 (15%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 11 EDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIE 70
+D+N ++ + R++L + + ++A +V G E+K +I ++ +
Sbjct: 54 KDENLALHITRLLHRRIKLFNDEKV-------LDARFVDGYDFEQK-FICIINLCEDACD 105
Query: 71 DFWRMIWTHQSKVILMITALFE 92
F + + ++ ++I++I+ +
Sbjct: 106 KFLQALSDNKVQIIVLISRHAD 127
>gnl|CDD|225297 COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal
transduction mechanisms].
Length = 180
Score = 35.9 bits (83), Expect = 0.014
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 16/106 (15%)
Query: 271 WPTTGVPNEE--SSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLACDILIR- 327
VP+ E ++ F+ EA + + +V+HC G GR+GTV+A +++
Sbjct: 80 ILDGTVPDLEDLDKIVDFIEEALS--------KGKKVVVHCQGGIGRSGTVIAAYLMLYG 131
Query: 328 HFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLNVYASKLT 373
+ + R+ R GAV T Q+ F +LT
Sbjct: 132 GLSLADE-----AIAVKRRRRPGAVVTEIQHLFELEQELFRKKELT 172
>gnl|CDD|222005 pfam13245, AAA_19, Part of AAA domain.
Length = 73
Score = 30.4 bits (69), Expect = 0.25
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 297 AAGREAGPLVIHCSPGTGRTGTVLACDILIRHFETSRSV 335
AA V+ PGTG+T T A I+ R RSV
Sbjct: 5 AAASGRSLFVVDGGPGTGKTATAAA--IIARLLAAGRSV 41
>gnl|CDD|225240 COG2365, COG2365, Protein tyrosine/serine phosphatase [Signal
transduction mechanisms].
Length = 249
Score = 30.9 bits (70), Expect = 0.98
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 301 EAGPLVIHCSPGTGRTGTVLACDILIRHFE 330
E GP++IHC+ G RTG V A R
Sbjct: 135 ENGPVLIHCTAGKDRTGLVAAL---YRKLV 161
>gnl|CDD|111998 pfam03162, Y_phosphatase2, Tyrosine phosphatase family. This
family is closely related to the pfam00102 and pfam00782
families.
Length = 150
Score = 30.0 bits (68), Expect = 1.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 304 PLVIHCSPGTGRTGTVLAC 322
P++IHC+ G RTG V+ C
Sbjct: 93 PVLIHCNRGKHRTGLVIGC 111
>gnl|CDD|185273 PRK15375, PRK15375, pathogenicity island 1 effector protein StpP;
Provisional.
Length = 535
Score = 30.9 bits (69), Expect = 1.3
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 270 NWPTTGVPNEESSLIAFLIE--ARAHMKGAAGREAG----PLVIHCSPGTGRTGTVLACD 323
NWP P + + +L + ++ GA GR + P+ IHC G GRTGT+ A
Sbjct: 430 NWPDHQ-PLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPM-IHCLGGVGRTGTMAAAL 487
Query: 324 IL 325
+L
Sbjct: 488 VL 489
>gnl|CDD|216258 pfam01037, AsnC_trans_reg, AsnC family. The AsnC family is a
family of similar bacterial transcription regulatory
proteins.
Length = 73
Score = 27.5 bits (62), Expect = 2.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 190 EVLDCHRVFGDFQITLK 206
EV++C+RV GD+ LK
Sbjct: 23 EVVECYRVTGDYDYLLK 39
Score = 27.5 bits (62), Expect = 2.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 221 EVLDCHRVFGDFQITLK 237
EV++C+RV GD+ LK
Sbjct: 23 EVVECYRVTGDYDYLLK 39
>gnl|CDD|183473 PRK12361, PRK12361, hypothetical protein; Provisional.
Length = 547
Score = 29.6 bits (67), Expect = 2.9
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 306 VIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
V+HC+ G GR+ VLA +L + + V V+ I+Q R A +Q + ++L
Sbjct: 179 VVHCALGRGRSVLVLAAYLLCKD----PDLTVEEVLQQIKQIRKTARLNKRQLRALEKML 234
Query: 366 N 366
Sbjct: 235 E 235
>gnl|CDD|189685 pfam00718, Polyoma_coat, Polyomavirus coat protein.
Length = 297
Score = 29.3 bits (66), Expect = 2.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 232 FQITLKKREVREKYVISSL 250
F +TL+KR V+ Y +SSL
Sbjct: 265 FSVTLRKRWVKNPYPVSSL 283
>gnl|CDD|222063 pfam13350, Y_phosphatase3, Tyrosine phosphatase family. This
family is closely related to the pfam00102 and pfam00782
families.
Length = 163
Score = 28.6 bits (65), Expect = 3.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 300 REAGPLVIHCSPGTGRTGTVLA 321
GP++ HC+ G RTG A
Sbjct: 121 DPDGPVLFHCTAGKDRTGVAAA 142
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton].
Length = 444
Score = 29.3 bits (66), Expect = 3.6
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 251 QIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFL 287
+I L +ELT + + W + +P + SL A+L
Sbjct: 374 KIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWL 410
>gnl|CDD|220710 pfam10351, Apt1, Golgi-body localisation protein domain. This is
the C-terminus of a family of proteins conserved from
plants to humans. The plant members are localised to the
Golgi proteins and appear to regulate membrane
trafficking, as they are required for rapid vesicle
accumulation at the tip of the pollen tube. The
C-terminus probably contains the Golgi localisation
signal and it is well-conserved.
Length = 451
Score = 29.2 bits (66), Expect = 3.8
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 9/33 (27%)
Query: 334 SVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLN 366
+VD P++V A +TS+QYA +Y ++
Sbjct: 40 TVDFPKLV---------ATSTSEQYAALYDIVT 63
>gnl|CDD|226683 COG4230, COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase
[Energy production and conversion].
Length = 769
Score = 29.3 bits (66), Expect = 4.7
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 277 PNEESSLIAFLIEARAHMKGAAGREAG--PLVIHCSPGTGRT-GTVLACDILIRHFETSR 333
P E++ LIA +A + EAG P V+ PG G T G L D + +
Sbjct: 271 PAEQTPLIAA--QAVRLL-----HEAGVPPGVLQLLPGRGETVGAALTADARVAGVMFTG 323
Query: 334 SVDVPRVV 341
S +V R++
Sbjct: 324 STEVARLI 331
>gnl|CDD|235107 PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.
Length = 292
Score = 28.9 bits (66), Expect = 4.8
Identities = 7/21 (33%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
L +HF+ + + D+P ++YN+
Sbjct: 115 LYQHFKAIAEATDLPIILYNV 135
>gnl|CDD|222910 PHA02614, PHA02614, Major capsid protein VP1; Provisional.
Length = 363
Score = 28.4 bits (64), Expect = 5.8
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 232 FQITLKKREVREKYVISSLQIKNLETNL 259
F++TL+KR V+ Y +SSL + +L +
Sbjct: 283 FRVTLRKRRVKNPYPVSSL-LNSLFNRM 309
>gnl|CDD|188637 cd00950, DHDPS, Dihydrodipicolinate synthase (DHDPS).
Dihydrodipicolinate synthase (DHDPS) is a key enzyme in
lysine biosynthesis. It catalyzes the aldol condensation
of L-aspartate-beta- semialdehyde and pyruvate to
dihydropicolinic acid via a Schiff base formation
between pyruvate and a lysine residue. The functional
enzyme is a homotetramer consisting of a dimer of
dimers. DHDPS is member of dihydrodipicolinate synthase
family that comprises several pyruvate-dependent class I
aldolases that use the same catalytic step to catalyze
different reactions in different pathways.
Length = 284
Score = 28.6 bits (65), Expect = 5.8
Identities = 7/21 (33%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
L HF+ + + D+P ++YN+
Sbjct: 114 LYAHFKAIAEATDLPVILYNV 134
>gnl|CDD|237090 PRK12402, PRK12402, replication factor C small subunit 2; Reviewed.
Length = 337
Score = 28.4 bits (64), Expect = 5.9
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 289 EARAHMKGAAGREAGP-LVIHCSPGTGRTGTVLA 321
E + A P L++ PG+G+T V A
Sbjct: 22 EVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRA 55
>gnl|CDD|214628 smart00344, HTH_ASNC, helix_turn_helix ASNC type. AsnC: an
autogenously regulated activator of asparagine
synthetase A transcription in Escherichia coli).
Length = 108
Score = 27.1 bits (61), Expect = 7.2
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 175 FENSVEKCADYLPPSEVLDCHRVFGDFQITLK 206
F +EK EV + + V GD+ LK
Sbjct: 80 FLEKLEKL------PEVEEVYLVTGDYDYLLK 105
>gnl|CDD|215723 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal
domain. The structure of beta-ketoacyl synthase is
similar to that of the thiolase family (pfam00108) and
also chalcone synthase. The active site of beta-ketoacyl
synthase is located between the N and C-terminal
domains. The N-terminal domain contains most of the
structures involved in dimer formation and also the
active site cysteine.
Length = 243
Score = 27.6 bits (62), Expect = 9.0
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 11/61 (18%)
Query: 59 IACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFY 118
+ C+ P E+FW ++ + I P Y + I F
Sbjct: 9 MGCRFPGGVGPEEFWELLLAGRD----AIREF-----PADLSGLYPPSRVA--GEIYGFD 57
Query: 119 F 119
F
Sbjct: 58 F 58
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.422
Gapped
Lambda K H
0.267 0.0798 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,514,360
Number of extensions: 1860971
Number of successful extensions: 1299
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1260
Number of HSP's successfully gapped: 53
Length of query: 380
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 281
Effective length of database: 6,546,556
Effective search space: 1839582236
Effective search space used: 1839582236
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)