RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10360
(380 letters)
>2bzl_A Tyrosine-protein phosphatase, non-receptor type 14; PTPN14,
hydrolase; 1.65A {Homo sapiens}
Length = 325
Score = 244 bits (625), Expect = 8e-79
Identities = 81/360 (22%), Positives = 128/360 (35%), Gaps = 123/360 (34%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
+++R V+P E RV L E + YINA++++ G
Sbjct: 73 ERSRIREVVPYEENRVELIPTKENNTG---YINASHIKVVVG------------------ 111
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
G E YIA Q
Sbjct: 112 --------------------------GAEWHYIATQG----------------------- 122
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
PL +T DFW+M+W VI M+TA E K
Sbjct: 123 ----------------PLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTK---------- 156
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
HR Y P +G F++T K R Y + L+
Sbjct: 157 --SHR-------------------YWPKLGSKHSSATYGKFKVTTKFRTDSVCYATTGLK 195
Query: 252 IKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMK------GAAGREAGPL 305
+K+L + R + H+ YT+WP G P + +++L E ++ + P+
Sbjct: 196 VKHLLSGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRRHTNSMLEGTKNRHPPI 255
Query: 306 VIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
V+HCS G GRTG ++ +++I E + V+VP ++ +R+ R + T QY F+Y+VL
Sbjct: 256 VVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVL 315
>1jln_A STEP-like ptpase, protein tyrosine phosphatase, receptor type, R;
PTP-SL, PTPBR7, ERK2-MAP kinase regulation, hydrolase;
1.81A {Mus musculus} SCOP: c.45.1.2 PDB: 2a8b_A
Length = 297
Score = 241 bits (617), Expect = 5e-78
Identities = 89/367 (24%), Positives = 133/367 (36%), Gaps = 126/367 (34%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P KNRY ++P P +RV L S S YINANY+RG G+EK +IA Q
Sbjct: 54 PRHGTKNRYKTILPNPLSRVCLRPKNITDSLS-TYINANYIRGYSGKEKAFIATQG---- 108
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLI 127
Sbjct: 108 ------------------------------------------------------------ 108
Query: 128 FAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLP 187
P+ NT+ DFW+M+W S VI+MIT L E + EKC Y P
Sbjct: 109 --------------------PMINTVNDFWQMVWQEDSPVIVMITKLKEKN-EKCVLYWP 147
Query: 188 PSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVI 247
+ ++G ++ + + Y I
Sbjct: 148 ------------------------------------EKRGIYGKVEVLVTGVTECDNYTI 171
Query: 248 SSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVI 307
+L +K + + + H WYT+WP P+ L+ +++ A GP+V+
Sbjct: 172 RNLVLKQ--GSHTQHVKHYWYTSWPDHKTPDSAQPLLQLMLDVEEDRL--ASEGRGPVVV 227
Query: 308 HCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLNV 367
HCS G GRTG +A I + + VD +V +R R G V TS+QY F++ L +
Sbjct: 228 HCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRVDRGGMVQTSEQYEFVHHALCL 287
Query: 368 YASKLTG 374
+ S+L+
Sbjct: 288 FESRLSP 294
>2pa5_A Tyrosine-protein phosphatase non-receptor type 9; protein tyrosine
phosphatase, MEG2, PTPN9, structural genomi structural
genomics consortium, SGC; 1.60A {Homo sapiens}
Length = 314
Score = 235 bits (601), Expect = 2e-75
Identities = 88/369 (23%), Positives = 131/369 (35%), Gaps = 129/369 (34%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
+KNRY +V + +TRV+L + + + DYINA+++ G K
Sbjct: 54 EKNRYGDVPCLDQTRVKL-TKRSGHTQT-DYINASFMDGYK------------------- 92
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
++ YI Q
Sbjct: 93 ---------------------------QKNAYIGTQG----------------------- 102
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
PL+NT DFW M+W + VI+M T E KC Y P +
Sbjct: 103 ----------------PLENTYRDFWLMVWEQKVLVIVMTTRFEEGGRRKCGQYWPLEK- 145
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
D FG +T E Y ++L+
Sbjct: 146 --------------------------------DSRIRFGFLTVTNLGVENMNHYKKTTLE 173
Query: 252 IKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGR---------EA 302
I N E R++TH + +WP GVP+ +SLI FL R A
Sbjct: 174 IHNTEERQKRQVTHFQFLSWPDYGVPSSAASLIDFLRVVRNQQSLAVSNMGARSKGQCPE 233
Query: 303 GPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
P+V+HCS G GRTGT + DI + E +++V + V +R RA ++ T +QY F Y
Sbjct: 234 PPIVVHCSAGIGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQRAFSIQTPEQYYFCY 293
Query: 363 RVLNVYASK 371
+ + +A K
Sbjct: 294 KAILEFAEK 302
>2cjz_A Human protein tyrosine phosphatase PTPN5; protein phosphatase,
STEP, hydrolase; HET: PTR; 1.70A {Homo sapiens} PDB:
2bij_A 2bv5_A*
Length = 305
Score = 234 bits (600), Expect = 2e-75
Identities = 87/365 (23%), Positives = 132/365 (36%), Gaps = 125/365 (34%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
PG KNRY ++P P +RV L S S YINANY+RG GEEK YIA Q
Sbjct: 62 PGLVRKNRYKTILPNPHSRVCLTSPDPDDPLS-SYINANYIRGYGGEEKVYIATQG---- 116
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLI 127
Sbjct: 116 ------------------------------------------------------------ 116
Query: 128 FAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLP 187
P+ +T+ DFWRM+W + +I+MIT + E + KC +Y P
Sbjct: 117 --------------------PIVSTVADFWRMVWQEHTPIIVMITNIEEMNE-KCTEYWP 155
Query: 188 PSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVI 247
+V + +IT++K E Y +
Sbjct: 156 EEQV------------------------------------AYDGVEITVQKVIHTEDYRL 179
Query: 248 SSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVI 307
+ +K+ R L H W+T+WP P+ L+ + E + G P+++
Sbjct: 180 RLISLKS--GTEERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQQ-EGPHCAPIIV 236
Query: 308 HCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLNV 367
H S G GRTG +A I + VD+ + +RQ R G + T +QY F++ V+++
Sbjct: 237 HSSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGGMIQTCEQYQFVHHVMSL 296
Query: 368 YASKL 372
Y +L
Sbjct: 297 YEKQL 301
>1zc0_A Tyrosine-protein phosphatase, non-receptor type 7; heptp, human
tyrosine phosphatase catalytic domain, LC-PTP,
hydrolase; 1.85A {Homo sapiens} PDB: 2gp0_A 2qdc_A
2hvl_A 2qdp_A 2qdm_A 3o4s_A 3o4t_A* 3o4u_A* 3d44_A*
3d42_A* 2a3k_A
Length = 309
Score = 230 bits (589), Expect = 1e-73
Identities = 89/365 (24%), Positives = 134/365 (36%), Gaps = 127/365 (34%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
PG K+RY ++P P++RV L ++ D DYINANY+RG G+EK YIA Q
Sbjct: 66 PGHASKDRYKTILPNPQSRVCL-GRAQSQEDG-DYINANYIRGYDGKEKVYIATQG---- 119
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLI 127
Sbjct: 119 ------------------------------------------------------------ 119
Query: 128 FAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLP 187
P+ NT+ DFW M+W + +I+M+T L E EKC Y P
Sbjct: 120 --------------------PMPNTVSDFWEMVWQEEVSLIVMLTQLREG-KEKCVHYWP 158
Query: 188 PSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVI 247
E +G FQI ++ + +Y +
Sbjct: 159 TEEE------------------------------------TYGPFQIRIQDMKECPEYTV 182
Query: 248 SSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVI 307
L I+ R + H+ ++ WP P L+ + E + AA GP+V+
Sbjct: 183 RQLTIQY--QEERRSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAA--HPGPIVV 238
Query: 308 HCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLNV 367
HCS G GRTG +A I + + VD+ +V +R R G + T++QY F++ L +
Sbjct: 239 HCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHHTLAL 298
Query: 368 YASKL 372
YA +L
Sbjct: 299 YAGQL 303
>1p15_A Protein-tyrosine phosphatase alpha; transmembrane, hydrolase,
phosphorylation; 2.00A {Mus musculus} SCOP: c.45.1.2
Length = 253
Score = 226 bits (578), Expect = 1e-72
Identities = 81/361 (22%), Positives = 124/361 (34%), Gaps = 125/361 (34%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
KNR +IP RV + ++ DY+NA+++ G + +
Sbjct: 11 KKNRVLQIIPYEFNRVII-PVKRGEENT-DYVNASFIDGYRQK----------------- 51
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
YIA Q
Sbjct: 52 -----------------------------DSYIASQG----------------------- 59
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
PL +TIEDFWRMIW +S I+M+T L E EKCA Y P +
Sbjct: 60 ----------------PLLHTIEDFWRMIWEWKSCSIVMLTELEERGQEKCAQYWPSDGL 103
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
+ +GD + LKK E E Y + L
Sbjct: 104 VS-----------------------------------YGDITVELKKEEECESYTVRDLL 128
Query: 252 IKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSP 311
+ N N R++ + WP G+P++ +I + + + + P+ +HCS
Sbjct: 129 VTNTRENKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQQSGN---HPITVHCSA 185
Query: 312 GTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLNVYASK 371
G GRTGT A ++ + +DV + V ++R R V T +QY F Y+V+ Y
Sbjct: 186 GAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYIDA 245
Query: 372 L 372
Sbjct: 246 F 246
>1wch_A Protein tyrosine phosphatase, non-receptor type 13; hydrolase,
phosphate ION, colorectal cancer alternative splicing,
coiled coil, cytoskeleton; 1.85A {Homo sapiens} SCOP:
c.45.1.2
Length = 315
Score = 227 bits (582), Expect = 1e-72
Identities = 79/354 (22%), Positives = 127/354 (35%), Gaps = 128/354 (36%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
KNRY N++P TRV L D YINA++++ P G
Sbjct: 77 RKNRYKNILPYDATRVPL-------GDEGGYINASFIKIPVG------------------ 111
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
EE YIACQ
Sbjct: 112 --------------------------KEEFVYIACQG----------------------- 122
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
PL T+ DFW+MIW +S VI M+T E KC Y
Sbjct: 123 ----------------PLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYW----- 161
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
P+ + V ++ L + + + +V+ ++
Sbjct: 162 ---------------------------PNILGKTTMVSNRLRLALVRMQQLKGFVVRAMT 194
Query: 252 IKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSP 311
+++++T R ++H+ +T WP P++ L+ F+ R +GP++ HCS
Sbjct: 195 LEDIQTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHI------HRSGPIITHCSA 248
Query: 312 GTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
G GR+GT++ D+++ D+ +V +R R G V T QY F Y+V+
Sbjct: 249 GIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVI 302
>2ooq_A Receptor-type tyrosine-protein phosphatase T; protein tyrosine
phosphatase, human, structural GE structural genomics
consortium, SGC, hydrolase; HET: B3P; 1.80A {Homo
sapiens} PDB: 1rpm_A 2c7s_A
Length = 286
Score = 223 bits (571), Expect = 3e-71
Identities = 90/354 (25%), Positives = 128/354 (36%), Gaps = 127/354 (35%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
+KNRY N+I +RVRL + S DYINANY+ G
Sbjct: 49 NKNRYGNIISYDHSRVRL-LVLDGDPHS-DYINANYIDGYHRP----------------- 89
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
+ YIA Q
Sbjct: 90 -----------------------------RHYIATQG----------------------- 97
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
P+Q T++DFWRMIW S I+M+T L E KC Y P
Sbjct: 98 ----------------PMQETVKDFWRMIWQENSASIVMVTNLVEVGRVKCVRYWP---- 137
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
D V+GD ++TL + E +YVI +
Sbjct: 138 --------------------------------DDTEVYGDIKVTLIETEPLAEYVIRTFT 165
Query: 252 IKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSP 311
++ + REL +T+WP GVP + L+ F+ + + EAGP+V+HCS
Sbjct: 166 VQKKGYHEIRELRLFHFTSWPDHGVPCYATGLLGFVRQVKFLNPP----EAGPIVVHCSA 221
Query: 312 GTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
G GRTG +A D ++ E VD+ V +R R V T +QY F++ +
Sbjct: 222 GAGRTGCFIAIDTMLDMAENEGVVDIFNCVRELRAQRVNLVQTEEQYVFVHDAI 275
>2b49_A Protein tyrosine phosphatase, non-receptor type 3; human, STRU
genomics, structural genomics consortium, SGC,
hydrolase; 1.54A {Homo sapiens}
Length = 287
Score = 220 bits (564), Expect = 4e-70
Identities = 80/363 (22%), Positives = 122/363 (33%), Gaps = 128/363 (35%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
DKNRY +V+P TRV L +EDYINA+YV
Sbjct: 46 DKNRYKDVLPYDTTRVLL-------QGNEDYINASYVNMEIPAAN--------------- 83
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
YIA Q
Sbjct: 84 ---------------------------LVNKYIATQG----------------------- 93
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
PL +T FW+++W + +I+M+T L E KC Y P
Sbjct: 94 ----------------PLPHTCAQFWQVVWDQKLSLIVMLTTLTERGRTKCHQYWP---- 133
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
+ ++ G F I + + YV +
Sbjct: 134 -----------------DPPDVMNH-------------GGFHIQCQSEDCTIAYVSREML 163
Query: 252 IKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSP 311
+ N +T +TH+ Y WP GVP++ S + F+ R+ ++ P+++HCS
Sbjct: 164 VTNTQTGEEHTVTHLQYVAWPDHGVPDDSSDFLEFVNYVRSLR-----VDSEPVLVHCSA 218
Query: 312 GTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYR-VLNVYAS 370
G GRTG ++ + + E + + +V +R RA V TS QY F+ +L VY
Sbjct: 219 GIGRTGVLVTMETAMCLTERNLPIYPLDIVRKMRDQRAMMVQTSSQYKFVCEAILRVYEE 278
Query: 371 KLT 373
L
Sbjct: 279 GLV 281
>2i75_A Tyrosine-protein phosphatase non-receptor type 4; PTPN4, PTP,
tyrosine phosphatase, MEG-1, structural genomics
structural genomics consortium, SGC; 2.45A {Homo
sapiens}
Length = 320
Score = 221 bits (564), Expect = 8e-70
Identities = 79/354 (22%), Positives = 115/354 (32%), Gaps = 126/354 (35%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
KNRY ++ P TRV L +EDYINANY+
Sbjct: 73 SKNRYRDISPYDATRVIL-------KGNEDYINANYINMEIPSSS--------------- 110
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
YIACQ
Sbjct: 111 ---------------------------IINQYIACQG----------------------- 120
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
PL +T DFW+M W S +++M+T E KC Y P
Sbjct: 121 ----------------PLPHTCTDFWQMTWEQGSSMVVMLTTQVERGRVKCHQYWP---- 160
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
+ +G +Q+T E Y+ +
Sbjct: 161 --------------EPTGSSS----------------YGCYQVTCHSEEGNTAYIFRKMT 190
Query: 252 IKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSP 311
+ N E N R LT + Y WP GVP++ S + F+ R G + P+V+HCS
Sbjct: 191 LFNQEKNESRPLTQIQYIAWPDHGVPDDSSDFLDFVCHVRNKRAG----KEEPVVVHCSA 246
Query: 312 GTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
G GRTG ++ + + E ++ V +V +R RA + T QY F+ +
Sbjct: 247 GIGRTGVLITMETAMCLIECNQPVYPLDIVRTMRDQRAMMIQTPSQYRFVCEAI 300
>3i36_A Vascular protein tyrosine phosphatase 1; PTP, hydrolase; 1.84A
{Rattus norvegicus} PDB: 2nz6_A 2cfv_A
Length = 342
Score = 221 bits (565), Expect = 1e-69
Identities = 85/354 (24%), Positives = 125/354 (35%), Gaps = 125/354 (35%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
KNRY NV+P +RV+L + D YINANY+ G ++
Sbjct: 72 GKNRYNNVLPYDISRVKLSVQTHSTDD---YINANYMPGYHSKKD--------------- 113
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
+IA Q
Sbjct: 114 -------------------------------FIATQG----------------------- 119
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
PL NT++DFWRM+W I+M+T E KC +Y P +
Sbjct: 120 ----------------PLPNTLKDFWRMVWEKNVYAIVMLTKCVEQGRTKCEEYWPSKQA 163
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
+GD + + V ++ I
Sbjct: 164 Q-----------------------------------DYGDITVAMTSEVVLPEWTIRDFV 188
Query: 252 IKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSP 311
+KN++++ L +T+WP GVP+ LI F R +MK P+++HCS
Sbjct: 189 VKNMQSSESHPLRQFHFTSWPDHGVPDTTDLLINFRYLVRDYMKQIP--PESPILVHCSA 246
Query: 312 GTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
G GRTGT +A D LI E +VDV +VY++R R V T QY F+ + +
Sbjct: 247 GVGRTGTFIAIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYVFLNQCV 300
>1fpr_A Protein-tyrosine phosphatase 1C; protein tyrosine phosphatase,
substrate specificity, residue shift, signaling protein;
HET: PTR; 2.50A {Homo sapiens} SCOP: c.45.1.2 PDB:
1gwz_A
Length = 284
Score = 219 bits (559), Expect = 2e-69
Identities = 87/362 (24%), Positives = 131/362 (36%), Gaps = 121/362 (33%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P + KNRY N++P +RV L S DYINANY++
Sbjct: 26 PENKGKNRYKNILPFDHSRVILQGRDSNIPGS-DYINANYIKN----------------- 67
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLI 127
+ GP K YIA Q
Sbjct: 68 ------------------------QLLGPDENAKTYIASQG------------------- 84
Query: 128 FAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLP 187
L+ T+ DFW+M W S+VI+M T E KC Y P
Sbjct: 85 --------------------CLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWP 124
Query: 188 PSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVI 247
+ R +G + +T +Y +
Sbjct: 125 E----------------------------------VGMQRAYGPYSVTNCGEHDTTEYKL 150
Query: 248 SSLQIKNLETN-LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLV 306
+LQ+ L+ L RE+ H Y +WP GVP+E +++FL + + AGP++
Sbjct: 151 RTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLP--HAGPII 208
Query: 307 IHCSPGTGRTGTVLACDILIRHFET---SRSVDVPRVVYNIRQCRAGAVATSQQYAFIYR 363
+H S G GRTGT++ D+L+ + T +D+ + + +R R+G V T QY FIY
Sbjct: 209 VHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYV 268
Query: 364 VL 365
+
Sbjct: 269 AI 270
>1l8k_A T-cell protein-tyrosine phosphatase; hydrolase; 2.56A {Homo
sapiens} SCOP: c.45.1.2
Length = 314
Score = 218 bits (558), Expect = 6e-69
Identities = 77/354 (21%), Positives = 124/354 (35%), Gaps = 125/354 (35%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
++NRY +V P +RV+L + ++ DYINA+ V + +
Sbjct: 44 NRNRYRDVSPYDHSRVKLQNA-----EN-DYINASLVDIEEAQRS--------------- 82
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
YI Q
Sbjct: 83 -------------------------------YILTQG----------------------- 88
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
PL NT FW M+W ++K ++M+ + E KCA Y
Sbjct: 89 ----------------PLPNTCCHFWLMVWQQKTKAVVMLNRIVEKESVKCAQYW----- 127
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
P++ + F + L +V+ Y + LQ
Sbjct: 128 ---------------------------PTDDQEMLFKETGFSVKLLSEDVKSYYTVHLLQ 160
Query: 252 IKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSP 311
++N+ + R ++H YT WP GVP +S + FL + R G+ + GP VIHCS
Sbjct: 161 LENINSGETRTISHFHYTTWPDFGVPESPASFLNFLFKVRES--GSLNPDHGPAVIHCSA 218
Query: 312 GTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
G GR+GT D + E +++ +V+ N+R+ R G + T Q F Y +
Sbjct: 219 GIGRSGTFSLVDTCLVLMEKGDDINIKQVLLNMRKYRMGLIQTPDQLRFSYMAI 272
>2i1y_A Receptor-type tyrosine-protein phosphatase; receptor-type protein
tyrosine phosphatase precursor, phosph structural
genomics, PSI; 2.23A {Homo sapiens} PDB: 2qep_A
Length = 301
Score = 217 bits (556), Expect = 9e-69
Identities = 71/355 (20%), Positives = 122/355 (34%), Gaps = 125/355 (35%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
KNR+ + +P R++L + S S DYINA+ + YIA Q
Sbjct: 58 KKNRHPDFLPYDHARIKL-KVESSPSRS-DYINASPIIEHDPRMPAYIATQG-------- 107
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
Sbjct: 107 ------------------------------------------------------------ 107
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
PL +TI DFW+M+W VI+M+T L E+ V++C Y P
Sbjct: 108 ----------------PLSHTIADFWQMVWESGCTVIVMLTPLVEDGVKQCDRYWPDEG- 150
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
++ +++ L + C D +++ S
Sbjct: 151 ---ASLYHVYEVNLVSEHIW-CED-----------------------------FLVRSFY 177
Query: 252 IKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSP 311
+KN++T R LT + +WP G P L+ F + +G + P+++HCS
Sbjct: 178 LKNVQTQETRTLTQFHFLSWPAEGTPASTRPLLDFRRKVNKCYRG----RSCPIIVHCSD 233
Query: 312 GTGRTGTVLACDILIRHF-ETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
G GRTGT + D+++ + + +D+ + ++R R G V + Q+ F +
Sbjct: 234 GAGRTGTYILIDMVLNRMAKGVKEIDIAATLEHVRDQRPGLVRSKDQFEFALTAV 288
>3b7o_A Tyrosine-protein phosphatase non-receptor type 11; SHP2, PTPN11,
tyrosine phosphatase, structural genomics, STR genomics
consortium, SGC, deafness; 1.60A {Homo sapiens} PDB:
3jrl_A* 3mow_A* 3o5x_A*
Length = 316
Score = 217 bits (555), Expect = 1e-68
Identities = 88/365 (24%), Positives = 127/365 (34%), Gaps = 118/365 (32%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
+KNRY N++P TRV L G S DYINAN + +
Sbjct: 62 NKNRYKNILPFDHTRVVLHDGDPNEPVS-DYINANIIMPEFETKCNNS------------ 108
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
+K YIA Q
Sbjct: 109 --------------------------KPKKSYIATQG----------------------- 119
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
LQNT+ DFWRM++ S+VI+M T E KC Y P
Sbjct: 120 ----------------CLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWP---- 159
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
+ ++ +G ++ K Y + L+
Sbjct: 160 --------------DEYALK----------------EYGVMRVRNVKESAAHDYTLRELK 189
Query: 252 IKNL-ETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCS 310
+ + + N R + + WP GVP++ ++ FL E + +AGP+V+HCS
Sbjct: 190 LSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESIM--DAGPVVVHCS 247
Query: 311 PGTGRTGTVLACDILIRHFE---TSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLNV 367
G GRTGT + DILI +DVP+ + +R R+G V T QY FIY +
Sbjct: 248 AGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYRFIYMAVQH 307
Query: 368 YASKL 372
Y L
Sbjct: 308 YIETL 312
>2hc1_A Receptor-type tyrosine-protein phosphatase beta; protein tyrosine
phosphatase, WPD-loop, sulfamic acid, inhibitor, drug
design, hydrolase; 1.30A {Homo sapiens} PDB: 2h03_A
2hc2_A 2i4g_A* 2h04_A* 2h02_A 2i3u_A 2i3r_A 2i4e_A*
2i4h_A* 2i5x_A* 2ahs_A
Length = 291
Score = 216 bits (552), Expect = 2e-68
Identities = 83/355 (23%), Positives = 120/355 (33%), Gaps = 129/355 (36%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
KNRY N++P TRV+L S DYINA+Y+ G +
Sbjct: 55 GKNRYNNILPYDATRVKL-------SGGSDYINASYIPGNNFRRE--------------- 92
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
YI Q
Sbjct: 93 -------------------------------YIVTQG----------------------- 98
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
PL T +DFW+M+W I+M+T E KC Y P
Sbjct: 99 ----------------PLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWP---- 138
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
+ Y GD + + V ++ I +
Sbjct: 139 -----------------ADQDSLYY-------------GDLILQMLSESVLPEWTIREFK 168
Query: 252 IKNLET-NLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCS 310
I E + R + H YT WP GVP SLI F+ R + AGP V+HCS
Sbjct: 169 ICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDY--INRSPGAGPTVVHCS 226
Query: 311 PGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
G GRTGT +A D +++ ++ SVD+ V+++R R V T QY ++++ +
Sbjct: 227 AGVGRTGTFIALDRILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYVYLHQCV 281
>2gjt_A Receptor-type tyrosine-protein phosphatase PTPro; tyrosine
phosphatase, glepp1, PTPU2, structural genom structural
genomics consortium, SGC; 2.15A {Homo sapiens} PDB:
2g59_A 2pi7_A
Length = 295
Score = 216 bits (553), Expect = 2e-68
Identities = 84/365 (23%), Positives = 128/365 (35%), Gaps = 130/365 (35%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
KNRY N++P +RVRL + DYINANY+ G ++
Sbjct: 51 CKNRYTNILPYDFSRVRL-VSMNEEEGA-DYINANYIPGYNSPQE--------------- 93
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
YIA Q
Sbjct: 94 -------------------------------YIATQG----------------------- 99
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
PL T DFW+M+ +S++I+M+T E KC Y P +E
Sbjct: 100 ----------------PLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWPFTEE 143
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
+GD + + E ++ + +
Sbjct: 144 ----------------------------------PIAYGDITVEMISEEEQDDWACRHFR 169
Query: 252 IKNLETNLWRELTHVWYTNWPTTGVPNEES--SLIAFLIEARAHMKGAAGREAGPLVIHC 309
I + +++ H YT WP GVP + S++ F+ R A + GP++IHC
Sbjct: 170 INY--ADEMQDVMHFNYTAWPDHGVPTANAAESILQFVHMVRQQ----ATKSKGPMIIHC 223
Query: 310 SPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYR-VLNVY 368
S G GRTGT +A D L++H VD+ +V +R R V T +QY FI++ V ++
Sbjct: 224 SAGVGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCVQLMW 283
Query: 369 ASKLT 373
K
Sbjct: 284 MKKKQ 288
>2cm2_A Tyrosine-protein phosphatase non-receptor type 1; polymorphism,
phosphorylation, endoplasmic reticulum, oxidation,
hydrolase, acetylation; 1.5A {Homo sapiens} SCOP:
c.45.1.2 PDB: 2cm3_A 2cmb_A* 2cmc_A* 2cne_A* 3a5j_A
2cma_A 3a5k_A 3eu0_A 3sme_A 2azr_A* 2b07_A* 2h4g_A*
2h4k_A* 2hb1_A* 2qbp_A* 2qbq_A* 2qbr_A* 2qbs_A* 2zmm_A*
2zn7_A* ...
Length = 304
Score = 216 bits (552), Expect = 3e-68
Identities = 83/366 (22%), Positives = 132/366 (36%), Gaps = 127/366 (34%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
++NRY +V P +R++L DYINA+ ++ + +
Sbjct: 48 NRNRYRDVSPFDHSRIKLHQEDN------DYINASLIKMEEAQ----------------- 84
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
+ YI Q
Sbjct: 85 -----------------------------RSYILTQG----------------------- 92
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
PL NT FW M+W +S+ ++M+ + E KCA Y P E
Sbjct: 93 ----------------PLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKE- 135
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
E E + + ++TL +++ Y + L+
Sbjct: 136 -----------------EKEMIFED-------------TNLKLTLISEDIKSYYTVRQLE 165
Query: 252 IKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSP 311
++NL T RE+ H YT WP GVP +S + FL + R G+ E GP+V+HCS
Sbjct: 166 LENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES--GSLSPEHGPVVVHCSA 223
Query: 312 GTGRTGTVLACDI---LIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLNVY 368
G GR+GT D L+ + SVD+ +V+ +R+ R G + T+ Q F Y +
Sbjct: 224 GIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 283
Query: 369 ASKLTG 374
A + G
Sbjct: 284 AKFIMG 289
>2p6x_A Tyrosine-protein phosphatase non-receptor type 22; tyrosine
phosphatase, lymphoid phosphatase, PEP, LYP, struct
genomics; 1.90A {Homo sapiens} PDB: 3h2x_A 3brh_A
2qct_A* 2qcj_A* 3olr_A* 3omh_A*
Length = 309
Score = 215 bits (549), Expect = 1e-67
Identities = 77/366 (21%), Positives = 127/366 (34%), Gaps = 130/366 (35%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
KNRY +++P +RV L S + DS YINAN+++G G +
Sbjct: 56 KKNRYKDILPYDYSRVEL-SLITSDEDS-SYINANFIKGVYGPKA--------------- 98
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
YIA Q
Sbjct: 99 -------------------------------YIATQG----------------------- 104
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
PL T+ DFWRMIW + +I+M +E +KC Y
Sbjct: 105 ----------------PLSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWA---- 144
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
E + FG F ++ + + + Y+I +L+
Sbjct: 145 -----------------------------EPGEMQLEFGPFSVSCEAEKRKSDYIIRTLK 175
Query: 252 IKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSP 311
+K + R + Y NWP VP+ ++ + + R + + ++ P+ IHCS
Sbjct: 176 VKF--NSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQED----DSVPICIHCSA 229
Query: 312 GTGRTGTVLACDI---LIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYR-VLNV 367
G GRTG + A D L++ + V ++ +R R V T +QY +Y VL +
Sbjct: 230 GCGRTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYELVYNAVLEL 289
Query: 368 YASKLT 373
+ ++
Sbjct: 290 FKRQMD 295
>1yfo_A D1, receptor protein tyrosine phosphatase alpha; hydrolase, signal
transduction, glycoprotein, phosphorylation, signal;
2.25A {Mus musculus} SCOP: c.45.1.2
Length = 302
Score = 213 bits (545), Expect = 3e-67
Identities = 85/358 (23%), Positives = 126/358 (35%), Gaps = 130/358 (36%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
+KNRY N++P +RV L + E DS DYINA+++ G + + K
Sbjct: 57 EKNRYVNILPYDHSRVHL-TPVEGVPDS-DYINASFINGYQEKNK--------------- 99
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
+IA Q
Sbjct: 100 -------------------------------FIAAQG----------------------- 105
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
P + T+ DFWRMIW + I+M+T L E KCA Y P
Sbjct: 106 ----------------PKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGC 149
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
+G+ +++++ V Y +
Sbjct: 150 W-----------------------------------TYGNVRVSVEDVTVLVDYTVRKFC 174
Query: 252 IKNL----ETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVI 307
I+ + R +T +T+WP GVP ++ FL + +A + AG +V+
Sbjct: 175 IQQVGDVTNRKPQRLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNP----QYAGAIVV 230
Query: 308 HCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
HCS G GRTGT + D ++ + R VDV V IR R V T QY FIY+ L
Sbjct: 231 HCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQAL 288
>2h4v_A Receptor-type tyrosine-protein phosphatase gamma; tyrosine receptor
phosphatase, human, structural GENO structural genomics
consortium, SGC; HET: FLC; 1.55A {Homo sapiens} PDB:
3qcd_A 3qcc_A 3qcb_A 3qce_A* 3qcf_A* 3qcg_A* 3qch_A*
3qci_A* 3qcj_A* 3qck_A* 2pbn_A 2hy3_A 3qcm_A* 3qcl_A*
3qcn_A
Length = 320
Score = 213 bits (545), Expect = 6e-67
Identities = 88/354 (24%), Positives = 128/354 (36%), Gaps = 113/354 (31%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
KNRY N++ +RV+L S DYINANYV G +
Sbjct: 69 HKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKA--------------- 113
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
YIA Q
Sbjct: 114 -------------------------------YIATQG----------------------- 119
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
PL++T EDFWRMIW + +I+MIT L E KC Y P
Sbjct: 120 ----------------PLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTEN- 162
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
+G+ +TLK + A Y R F +++ +V++ +
Sbjct: 163 ---SEEYGNIIVTLK--STKIHACY--------TVRRF-----SIRNTKVKKGQKGNPKG 204
Query: 252 IKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSP 311
+N R + YT WP GVP ++ F+ A E GP+++HCS
Sbjct: 205 RQNE-----RVVIQYHYTQWPDMGVPEYALPVLTFV----RRSSAARMPETGPVLVHCSA 255
Query: 312 GTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
G GRTGT + D +++ + +V+V + +IR R V T +QY FI+ L
Sbjct: 256 GVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDAL 309
>3s3e_A Tyrosine-protein phosphatase 10D; differentiation, neurogenesis,
signal transduction, developm protein, hydrolase; 2.40A
{Drosophila melanogaster} PDB: 3s3f_A 3s3h_A* 3s3k_A*
Length = 307
Score = 212 bits (541), Expect = 1e-66
Identities = 84/358 (23%), Positives = 124/358 (34%), Gaps = 127/358 (35%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P KNR+ N++P +R +L + S DYINANYV G +
Sbjct: 68 PCNRPKNRFTNILPYDHSRFKL-QPVDDDEGS-DYINANYVPGHNSPRE----------- 114
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLI 127
+I Q
Sbjct: 115 -----------------------------------FIVTQG------------------- 120
Query: 128 FAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLP 187
PL +T +DFWRM W S+ I+M+T FE EKC Y P
Sbjct: 121 --------------------PLHSTRDDFWRMCWESNSRAIVMLTRCFEKGREKCDQYWP 160
Query: 188 PSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVI 247
V +GD ++ + +V+
Sbjct: 161 -----------------NDTVPVF-----------------YGDIKVQILNDSHYADWVM 186
Query: 248 SSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVI 307
+ + + R L H +T WP GVPN +L+ F+ R + E P+V+
Sbjct: 187 TEFMLCR--GSEQRILRHFHFTTWPDFGVPNPPQTLVRFVRAFRDRIGA----EQRPIVV 240
Query: 308 HCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
HCS G GR+GT + D +++ TS VD+ +VY +R+ R V T QQY I++ L
Sbjct: 241 HCSAGVGRSGTFITLDRILQQINTSDYVDIFGIVYAMRKERVWMVQTEQQYICIHQCL 298
>2oc3_A Tyrosine-protein phosphatase non-receptor type 18; protein tyrosine
phosphatase, human, structural genomics, structural
genomics consortium, SGC; 1.50A {Homo sapiens}
Length = 303
Score = 209 bits (534), Expect = 2e-65
Identities = 89/366 (24%), Positives = 123/366 (33%), Gaps = 132/366 (36%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
KNRY +V+P +TRV L E DYIN N++RG G
Sbjct: 62 RKNRYKDVLPYDQTRVILSLLQE--EGHSDYINGNFIRGVDGS----------------- 102
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
YIA Q
Sbjct: 103 -----------------------------LAYIATQG----------------------- 110
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLP-PSE 190
PL +T+ DFWR++W KVILM EN ++C Y E
Sbjct: 111 ----------------PLPHTLLDFWRLVWEFGVKVILMACREIENGRKRCERYWAQEQE 154
Query: 191 VLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSL 250
L G F ITL K E D ++ +L
Sbjct: 155 PLQ----TGLFCITLIK-EKWLNED-----------------------------IMLRTL 180
Query: 251 QIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCS 310
++ R + + Y +WP GVP+ ++A + EAR G PL +HCS
Sbjct: 181 KVTF--QKESRSVYQLQYMSWPDRGVPSSPDHMLAMVEEARRLQ----GSGPEPLCVHCS 234
Query: 311 PGTGRTGTVLACDILIRHFET---SRSVDVPRVVYNIRQCRAGAVATSQQYAFIYR-VLN 366
G GRTG + D + + T + VV +R+ R AV T +QY F+Y V
Sbjct: 235 AGCGRTGVLCTVDYVRQLLLTQMIPPDFSLFDVVLKMRKQRPAAVQTEEQYRFLYHTVAQ 294
Query: 367 VYASKL 372
++ S L
Sbjct: 295 MFCSTL 300
>1ygr_A CD45 protein tyrosine phosphatase; protein tyrosine phosphatase,
RPTP, LCA, lymphocyte activation, hydrolase; HET: PTR;
2.90A {Homo sapiens} PDB: 1ygu_A*
Length = 610
Score = 216 bits (553), Expect = 4e-65
Identities = 89/358 (24%), Positives = 129/358 (36%), Gaps = 125/358 (34%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
+KNRY +++P RV L S + S +YINA+Y+ G K
Sbjct: 56 NKNRYVDILPYDYNRVEL-SEINGDAGS-NYINASYIDGFK------------------- 94
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
E + YIA Q
Sbjct: 95 ---------------------------EPRKYIAAQG----------------------- 104
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
P T++DFWRMIW ++ VI+M+T E + KCA+Y P E
Sbjct: 105 ----------------PRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWPSME- 147
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
+ R FGD + + + + Y+I L
Sbjct: 148 --------------------------------EGTRAFGDVVVKINQHKRCPDYIIQKLN 175
Query: 252 IKNL-ETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCS 310
I N E RE+TH+ +T+WP GVP + L+ A + +GP+V+H S
Sbjct: 176 IVNKKEKATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAF----SNFFSGPIVVHSS 231
Query: 311 PGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLNVY 368
G GRTGT + D ++ E VDV V +R+ R V QY I++ L Y
Sbjct: 232 AGVGRTGTYIGIDAMLEGLEAENKVDVYGYVVKLRRQRCLMVQVEAQYILIHQALVEY 289
Score = 203 bits (518), Expect = 5e-60
Identities = 81/380 (21%), Positives = 125/380 (32%), Gaps = 144/380 (37%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSE-----------------DYINANYVRGPKGE 54
KNR +NVIP RV L E + +SE YINA+++
Sbjct: 347 SKNRNSNVIPYDYNRVPLKHELEMSKESEHDSDESSDDDSDSEEPSKYINASFIMSYWKP 406
Query: 55 EKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTI 114
E IA Q
Sbjct: 407 EV----------------------------------------------MIAAQG------ 414
Query: 115 EDFYFGAMKQSLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITAL 174
PL+ TI DFW+MI+ + KVI+M+T L
Sbjct: 415 ---------------------------------PLKETIGDFWQMIFQRKVKVIVMLTEL 441
Query: 175 FENSVEKCADYLPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQI 234
E CA Y + + +GD ++
Sbjct: 442 KHGDQEICAQYWG------------------------------------EGKQTYGDIEV 465
Query: 235 TLKKREVREKYVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHM 294
LK + Y + ++++ + R + YTNW +P E LI+ + + +
Sbjct: 466 DLKDTDKSSTYTLRVFELRHSKRKDSRTVYQYQYTNWSVEQLPAEPKELISMIQVVKQKL 525
Query: 295 K------GAAGREAGPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCR 348
G ++ PL+IHC G+ +TG A L+ ET VD+ +VV +R+ R
Sbjct: 526 PQKNSSEGNKHHKSTPLLIHCRDGSQQTGIFCALLNLLESAETEEVVDIFQVVKALRKAR 585
Query: 349 AGAVATSQQYAFIYRVLNVY 368
G V+T +QY F+Y V+
Sbjct: 586 LGMVSTFEQYQFLYDVIAST 605
>1lar_A Protein (LAR); tyrosine phosphatease, LAR protein, hydrolase; 2.00A
{Homo sapiens} SCOP: c.45.1.2 c.45.1.2 PDB: 2fh7_A
2nv5_A
Length = 575
Score = 214 bits (548), Expect = 1e-64
Identities = 84/354 (23%), Positives = 121/354 (34%), Gaps = 126/354 (35%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
KNRYANVI +RV L + + S DYINANY+ G +
Sbjct: 45 PKNRYANVIAYDHSRVIL-TSIDGVPGS-DYINANYIDGYR------------------- 83
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
++ YIA Q
Sbjct: 84 ---------------------------KQNAYIATQG----------------------- 93
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
PL T+ DFWRM+W ++ ++M+T L E S KC Y P
Sbjct: 94 ----------------PLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGT 137
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
G Q+TL Y + +
Sbjct: 138 -----------------------------------ETCGLIQVTLLDTVELATYTVRTFA 162
Query: 252 IKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSP 311
+ ++ REL + WP GVP + ++AFL +A +AGP+V+HCS
Sbjct: 163 LHKSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPL----DAGPMVVHCSA 218
Query: 312 GTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
G GRTG + D ++ + ++VD+ V +R R V T QY FI+ L
Sbjct: 219 GVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEAL 272
Score = 204 bits (521), Expect = 8e-61
Identities = 74/357 (20%), Positives = 112/357 (31%), Gaps = 124/357 (34%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
KNR N++P TRV L + DYINA+++ G + ++
Sbjct: 334 FKNRLVNIMPYELTRVCLQPIRG--VEGSDYINASFLDGYRQQKA--------------- 376
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
YIA Q
Sbjct: 377 -------------------------------YIATQG----------------------- 382
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
PL + EDFWRM+W H S +I+M+T L E EKC Y P
Sbjct: 383 ----------------PLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWP---- 422
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
+ + F + +Y++ +
Sbjct: 423 -------------------------------AERSARYQYFVVDPMAEYNMPQYILREFK 451
Query: 252 IKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSP 311
+ + R + +T+WP GVP I F+ + + + GP+ +HCS
Sbjct: 452 VTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQF--GQDGPITVHCSA 509
Query: 312 GTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLNVY 368
G GRTG + I++ VD+ + V +R R V T QY YR Y
Sbjct: 510 GVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEY 566
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 213 bits (544), Expect = 1e-64
Identities = 88/362 (24%), Positives = 132/362 (36%), Gaps = 121/362 (33%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P + KNRY N++P +RV L S DYINANY++
Sbjct: 268 PENKGKNRYKNILPFDHSRVILQGRDSNIPGS-DYINANYIKN----------------- 309
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLI 127
+ GP K YIA Q
Sbjct: 310 ------------------------QLLGPDENAKTYIASQG------------------- 326
Query: 128 FAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLP 187
L+ T+ DFW+M W S+VI+M T E KC Y P
Sbjct: 327 --------------------CLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWP 366
Query: 188 PSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVI 247
+ R +G + +T +Y +
Sbjct: 367 E----------------------------------VGMQRAYGPYSVTNCGEHDTTEYKL 392
Query: 248 SSLQIKNLETN-LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLV 306
+LQ+ L+ L RE+ H Y +WP GVP+E +++FL + + AGP++
Sbjct: 393 RTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLP--HAGPII 450
Query: 307 IHCSPGTGRTGTVLACDILIRHFET---SRSVDVPRVVYNIRQCRAGAVATSQQYAFIYR 363
+HCS G GRTGT++ D+L+ + T +D+ + + +R R+G V T QY FIY
Sbjct: 451 VHCSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYV 510
Query: 364 VL 365
+
Sbjct: 511 AI 512
Score = 77.6 bits (191), Expect = 8e-16
Identities = 25/156 (16%), Positives = 36/156 (23%), Gaps = 7/156 (4%)
Query: 211 EKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLWRELTHVWYTN 270
E Y VL + I LK ++ L
Sbjct: 74 ELVEYYTQQQGVL---QDRDGTIIHLKYPLNCSDPTSERWYHGHMSGGQAETLLQAKGEP 130
Query: 271 WPTTGVPNEESSLIAFLIEARAHMKGAAGR---EAGPLVIHCSPGTGRTGTVLACDILIR 327
W T V S F++ + A + + C G G + D L
Sbjct: 131 W-TFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLETFDSLTD 189
Query: 328 HFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYR 363
E + + R AT A I
Sbjct: 190 LVEHFKKTGIEEASGAFVYLRQPYYATRVNAADIEN 225
>3m4u_A Tyrosine specific protein phosphatase, putative; protein tyrosine
phosphatase, hydrolase; 2.39A {Trypanosoma brucei}
Length = 306
Score = 206 bits (526), Expect = 3e-64
Identities = 63/358 (17%), Positives = 99/358 (27%), Gaps = 121/358 (33%)
Query: 12 DKNRYANVIPIPETRVRLC-SGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIE 70
KNRY +++ ET A YIN N +
Sbjct: 47 HKNRYLDILANEETIYPPVLKAVGAQPGRYPYINGNLIDLDL------------------ 88
Query: 71 DFWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAE 130
++ACQA
Sbjct: 89 -----------------------------PHTFVACQA---------------------- 97
Query: 131 FSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLP-PS 189
P+ + DF + + +++M+T L E V K Y P
Sbjct: 98 -----------------PVPQGVPDFLETLSEKKVDLVVMLTKLREGGVLKAERYWPEEE 140
Query: 190 EVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISS 249
E G I + + + E ++
Sbjct: 141 EDSLSFPESGHDAIKVT--RDAEASYE-----------------------VDAELDIVRR 175
Query: 250 LQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHC 309
+ ++ + V Y WP GVP +S L + P+++HC
Sbjct: 176 PLVIHVPGKPMHRVLQVQYVGWPDHGVPESAASFDELLSVIKNC------VTTSPILVHC 229
Query: 310 SPGTGRTGTVLACDILIRHFETSRSVD--VPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
S G GRTGT++ + H E D V +V ++Q R G V +QYA IY +
Sbjct: 230 SAGIGRTGTLIGAYAALLHIERGILTDSTVYSIVAAMKQKRFGMVQRLEQYAVIYMTV 287
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 214 bits (545), Expect = 4e-64
Identities = 87/362 (24%), Positives = 131/362 (36%), Gaps = 121/362 (33%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
P + KNRY N++P +RV L S DYINANY++
Sbjct: 268 PENKGKNRYKNILPFDHSRVILQGRDSNIPGS-DYINANYIKN----------------- 309
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLI 127
+ GP K YIA Q
Sbjct: 310 ------------------------QLLGPDENAKTYIASQG------------------- 326
Query: 128 FAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLP 187
L+ T+ DFW+M W S+VI+M T E KC Y P
Sbjct: 327 --------------------CLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWP 366
Query: 188 PSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVI 247
+ R +G + +T +Y +
Sbjct: 367 E----------------------------------VGMQRAYGPYSVTNCGEHDTTEYKL 392
Query: 248 SSLQIKNLETN-LWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLV 306
+LQ+ L+ L RE+ H Y +WP GVP+E +++FL + + AGP++
Sbjct: 393 RTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLP--HAGPII 450
Query: 307 IHCSPGTGRTGTVLACDILIRHFET---SRSVDVPRVVYNIRQCRAGAVATSQQYAFIYR 363
+H S G GRTGT++ D+L+ + T +D+ + + +R R+G V T QY FIY
Sbjct: 451 VHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYV 510
Query: 364 VL 365
+
Sbjct: 511 AI 512
Score = 80.0 bits (197), Expect = 2e-16
Identities = 25/156 (16%), Positives = 36/156 (23%), Gaps = 7/156 (4%)
Query: 211 EKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLWRELTHVWYTN 270
E Y VL + I LK ++ L
Sbjct: 74 ELVEYYTQQQGVL---QDRDGTIIHLKYPLNCSDPTSERWYHGHMSGGQAETLLQAKGEP 130
Query: 271 WPTTGVPNEESSLIAFLIEARAHMKGAAGR---EAGPLVIHCSPGTGRTGTVLACDILIR 327
W T V S F++ + A + + C G G + D L
Sbjct: 131 W-TFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLETFDSLTD 189
Query: 328 HFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYR 363
E + + R AT A I
Sbjct: 190 LVEHFKKTGIEEASGAFVYLRQPYYATRVNAADIEN 225
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 210 bits (537), Expect = 1e-63
Identities = 88/365 (24%), Positives = 124/365 (33%), Gaps = 118/365 (32%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
+KNRY N++P TRV L G S DYINAN +
Sbjct: 275 NKNRYKNILPFDHTRVVLHDGDPNEPVS-DYINANIIMPE-------------------- 313
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
+K YIA Q
Sbjct: 314 ------------------FETKCNNSKPKKSYIATQG----------------------- 332
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
LQNT+ DFWRM++ S+VI+M T E KC Y P
Sbjct: 333 ----------------CLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWP---- 372
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
+ +Y G ++ K Y + L+
Sbjct: 373 -----------------DEYALKEY-------------GVMRVRNVKESAAHDYTLRELK 402
Query: 252 IKNL-ETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCS 310
+ + + N R + + WP GVP++ ++ FL E + +AGP+V+HCS
Sbjct: 403 LSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESIM--DAGPVVVHCS 460
Query: 311 PGTGRTGTVLACDILIRHFE---TSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLNV 367
G GRTGT + DILI +DVP+ + +R R+G V T QY IY +
Sbjct: 461 AGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYRSIYMAVQH 520
Query: 368 YASKL 372
Y L
Sbjct: 521 YIETL 525
Score = 42.5 bits (100), Expect = 2e-04
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 294 MKGAAGREAGPLVIHCSPGT---GRTGTVLACDILIRHFETSRSVDVPRVVYNIRQ 346
+ ++I C G + L+ H++ + V+ V ++Q
Sbjct: 159 ESNDGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQ 214
>2nlk_A Protein tyrosine phosphatase, receptor type, G VA (fragment);
PTPRG, R-PTP gamma, protein tyrosine phosphatase gamma,
D3S1 HPTPG, RPTPG, PTPG; 2.40A {Homo sapiens}
Length = 627
Score = 209 bits (535), Expect = 2e-62
Identities = 89/354 (25%), Positives = 122/354 (34%), Gaps = 113/354 (31%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
KNRY N++ +RV+L S DYINANYV G
Sbjct: 51 HKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYN------------------- 91
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
+ K YIA Q
Sbjct: 92 ---------------------------KAKAYIATQG----------------------- 101
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
PL++T EDFWRMIW + +I+MIT L E KC Y P
Sbjct: 102 ----------------PLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTEN- 144
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
+G+ +TLK + A Y R F +R V +
Sbjct: 145 ---SEEYGNIIVTLK--STKIHACY--------TVRRF----------SIRNTKVKKGQK 181
Query: 252 IKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSP 311
R + YT WP GVP ++ F A E GP+++HCS
Sbjct: 182 GNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTF----VRRSSAARMPETGPVLVHCSA 237
Query: 312 GTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVL 365
G GRTGT + D +++ + +V+V + +IR R V T +QY FI+ L
Sbjct: 238 GVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDAL 291
Score = 198 bits (506), Expect = 3e-58
Identities = 69/370 (18%), Positives = 113/370 (30%), Gaps = 124/370 (33%)
Query: 6 LPPGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPL 65
++KNR ++V+P RV L DYINA+Y+ G +
Sbjct: 346 QKECNKEKNRNSSVVPSERARVGLAPLPG--MKGTDYINASYIMGYYRSNE--------- 394
Query: 66 QNTIEDFWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQS 125
+I Q
Sbjct: 395 -------------------------------------FIITQH----------------- 400
Query: 126 LIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADY 185
PL +T +DFWRMIW H +++I+M+ + E Y
Sbjct: 401 ----------------------PLPHTTKDFWRMIWDHNAQIIVMLPDNQSLA-EDEFVY 437
Query: 186 LPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKY 245
P E F +TL ++ ++ E+
Sbjct: 438 WPSRE---ESMNCEAFTVTLISKDRLCLSNE--------------------------EQI 468
Query: 246 VISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPL 305
+I ++ + + E+ H WP P SS + + GP
Sbjct: 469 IIHDFILEATQDDYVLEVRHFQCPKWPNPDAP--ISSTFELINVIKEEALT----RDGPT 522
Query: 306 VIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYR-V 364
++H G G + A L + E +VDV +V I R G +QY FIY+ +
Sbjct: 523 IVHDEYGAVSAGMLCALTTLSQQLENENAVDVFQVAKMINLMRPGVFTDIEQYQFIYKAM 582
Query: 365 LNVYASKLTG 374
L++ ++K G
Sbjct: 583 LSLVSTKENG 592
>2jjd_A Receptor-type tyrosine-protein phosphatase epsilo; transmembrane,
phosphoprotein, consorti structural, glycoprotein, SGC,
PTPRE, membrane genomics; 3.20A {Homo sapiens}
Length = 599
Score = 207 bits (528), Expect = 2e-61
Identities = 87/360 (24%), Positives = 124/360 (34%), Gaps = 129/360 (35%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
+KNRY N++P +RV L S + S DYINA+Y+ G K
Sbjct: 56 EKNRYPNILPNDHSRVIL-SQLDGIPCS-DYINASYIDGYK------------------- 94
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
E+ +IA Q
Sbjct: 95 ---------------------------EKNKFIAAQG----------------------- 104
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
P Q T+ DFWRM+W +S I+M+T L E EKC Y P
Sbjct: 105 ----------------PKQETVNDFWRMVWEQKSATIVMLTNLKERKEEKCHQYWPDQGC 148
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
+G+ ++ ++ V Y I
Sbjct: 149 W-----------------------------------TYGNIRVCVEDCVVLVDYTIRKFC 173
Query: 252 IKNL---ETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIH 308
I+ R ++ + +T+WP GVP ++ FL + + AGP+V+H
Sbjct: 174 IQPQLPDGCKAPRLVSQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNPV----HAGPIVVH 229
Query: 309 CSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLNVY 368
CS G GRTGT + D ++ + VDV V IR R V T QY FIY+ L Y
Sbjct: 230 CSAGVGRTGTFIVIDAMMAMMHAEQKVDVFEFVSRIRNQRPQMVQTDMQYTFIYQALLEY 289
Score = 201 bits (514), Expect = 1e-59
Identities = 70/359 (19%), Positives = 116/359 (32%), Gaps = 120/359 (33%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQNTIED 71
K R +IP RV L + DYINA+++ G + ++
Sbjct: 348 KKARVIQIIPYDFNRVILSMKRG--QEYTDYINASFIDGYRQKDY--------------- 390
Query: 72 FWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLIFAEF 131
+IA Q
Sbjct: 391 -------------------------------FIATQG----------------------- 396
Query: 132 STGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADYLPPSEV 191
PL +T+EDFWRMIW +S I+M+T + E +KC Y P
Sbjct: 397 ----------------PLAHTVEDFWRMIWEWKSHTIVMLTEVQEREQDKCYQYWPTEGS 440
Query: 192 LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQ 251
+ G+ I +K ++++ Q
Sbjct: 441 V----THGEITIEIK--NDTLSEAI------------------------SIRDFLVTLNQ 470
Query: 252 IKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSP 311
+ + R + + WP G+P E +I + + + P+ +HCS
Sbjct: 471 PQARQGEQVRVVRQFHFHGWPEIGIPAEGKGMIDLIAAVQKQQQQT---GNHPITVHCSA 527
Query: 312 GTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYRVLNVYAS 370
G GRTGT +A ++ + +DV + V ++R R V T +QY F Y+V+ +
Sbjct: 528 GAGRTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLEQYEFCYKVVQDFID 586
>1lyv_A Protein-tyrosine phosphatase YOPH; toxin, hydrolase; 1.36A
{Yersinia enterocolitica} SCOP: c.45.1.2 PDB: 1qz0_A*
1ytn_A 1ytw_A 2i42_A 2y2f_A* 2ydu_A* 1xxp_A* 3blu_A*
1ypt_A* 3blt_A* 1xxv_A* 3f9b_A 3f9a_A 3f99_A 3bm8_A*
1pa9_A* 1yts_A
Length = 306
Score = 197 bits (502), Expect = 1e-60
Identities = 52/380 (13%), Positives = 100/380 (26%), Gaps = 148/380 (38%)
Query: 8 PGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPLQN 67
G E NR+ ++ +T VR +NANY++
Sbjct: 59 CGGEKLNRFRDIQCRRQTAVRA------------DLNANYIQVGNTR------------- 93
Query: 68 TIEDFWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQSLI 127
IACQ
Sbjct: 94 -----------------------------------TIACQY------------------- 99
Query: 128 FAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCA--DY 185
PLQ+ +E +RM+ +++ V+ ++ + E + ++ DY
Sbjct: 100 --------------------PLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDY 139
Query: 186 LPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKY 245
S +G + K + D + + +T+++
Sbjct: 140 FRQSG------TYGSITVESKMTQQVGLGDG----------IMADMYTLTIRE------- 176
Query: 246 VISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEE--SSLIAFLIEARAHMK-------- 295
+ V NWP + E +L + + + +
Sbjct: 177 ----------AGQKTISVPVVHVGNWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGS 226
Query: 296 -GAAGREAGPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGA-VA 353
A VIH G GRT + + + + + V +V +R R G V
Sbjct: 227 SAVADDSKLRPVIHSRAGVGRTAQL--IGAMCMNDSRNSQLSVEDMVSQMRVQRNGIMVQ 284
Query: 354 TSQQYAFIYRVLNVYASKLT 373
+Q + ++ L
Sbjct: 285 KDEQLDVLIKLAEGQGRPLL 304
>1g4w_R Protein tyrosine phosphatase SPTP; virulence factor, GTPase
activating protein, 4-helix bundle, disorder, signaling
protein; 2.20A {Salmonella typhimurium} SCOP: a.24.11.1
c.45.1.2 PDB: 1g4u_S
Length = 383
Score = 185 bits (471), Expect = 3e-55
Identities = 38/365 (10%), Positives = 85/365 (23%), Gaps = 137/365 (37%)
Query: 6 LPPGTEDKNRYANVIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQAPL 65
P + +++ +T+V+L G +N G
Sbjct: 142 GPTLGLARFAVSSIPINQQTQVKLSDGMP------VPVNTLTFDG--------------- 180
Query: 66 QNTIEDFWRMIWTHQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIEDFYFGAMKQS 125
+ +A P
Sbjct: 181 ----------------------------------KPVALAGSYPKN-------------- 192
Query: 126 LIFAEFSTGPKGEEKFYIACQAPLQNTIEDFWRMIWTHQSKVILMITALFENSVEKCADY 185
+ +E +M+ + ++++T+ + ++ Y
Sbjct: 193 -----------------------TPDALEAHMKMLLEKECSCLVVLTSEDQMQAKQLPPY 229
Query: 186 LPPSEVLDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKY 245
S FG+ +K +
Sbjct: 230 FRGSY------TFGEVHTNSQKVSSAS------------------------------QGE 253
Query: 246 VISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMK----GAAGRE 301
I ++ + + NWP L + + G + +
Sbjct: 254 AIDQYNMQLSCGEKRYTIPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSD 313
Query: 302 AGPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGA-VATSQQYAF 360
+IHC G GRTGT+ A +L + ++ +V + R R + + Q+
Sbjct: 314 KHLPMIHCLGGVGRTGTMAAALVLKDN----PHSNLEQVRADFRDSRNNRMLEDASQFVQ 369
Query: 361 IYRVL 365
+ +
Sbjct: 370 LKAMQ 374
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 73.3 bits (180), Expect = 9e-16
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 19/140 (13%)
Query: 234 ITL-KKREVREKYVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARA 292
+ L + E+ E + + L+ L + P GVP++ + +
Sbjct: 33 LVLPEDWEIEESWGDKDYYLSILKK---NGLQPLHIP-IPDGGVPSDSQ-FLTIMKWLL- 86
Query: 293 HMKGAAGREAGPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAV 352
E ++HC G GRTGT+LA +++ ++V + +R R GAV
Sbjct: 87 -------SEKEGNLVHCVGGIGRTGTILASYLILTE-----GLEVESAIDEVRLVRPGAV 134
Query: 353 ATSQQYAFIYRVLNVYASKL 372
T +Q F+ RV + S L
Sbjct: 135 QTYEQEMFLLRVEGMRKSWL 154
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.4 bits (161), Expect = 6e-12
Identities = 57/325 (17%), Positives = 92/325 (28%), Gaps = 90/325 (27%)
Query: 21 PIPETRVR-----LCSGGEAASDS--EDYINANY----------VRGPKGEEKFYIACQA 63
+ L S E E+ + NY R P + YI +
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 64 PLQNTIEDFWRMIWTHQSKVILMITALFENS--------GPKGEEKFYIACQAPLQNTIE 115
L N + F + + + + AL E G G K ++A L ++
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 116 D-FYFG----------------AMKQSLIF---------AEFSTGPK------GEEKFYI 143
F M Q L++ ++ S+ K E +
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 144 ACQAPLQNT---IEDFW-RMIW---THQSKVILMITALFENSVEKCADYLPPSEVLDCHR 196
P +N + + W K IL+ T V D+L + H
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCK-ILLTTR--FKQV---TDFLSAATT--THI 289
Query: 197 VFGDFQITLKKREVEK-CADYLP------PSEVLDCH----RVFG----DFQITLK--KR 239
+TL EV+ YL P EVL + + D T K
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 240 EVREKYV-ISSLQIKNLETNLWREL 263
+K I + LE +R++
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKM 374
Score = 52.9 bits (126), Expect = 1e-07
Identities = 39/227 (17%), Positives = 76/227 (33%), Gaps = 51/227 (22%)
Query: 175 FENSVE--KCADYLP---PSEV--LDCHRVFGDFQITLKKREVEKCADYLPPSEVLDCHR 227
FE + D L + V DC V + L K E++ + V R
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI--IMSKDAVSGTLR 66
Query: 228 VFGDFQITLKKREVREKYVISSLQI---------------KNLETNLWRELTHVWYTN-- 270
+F K+ E+ +K+V L+I ++ T ++ E Y +
Sbjct: 67 LFWTLL--SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 271 -WPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLACDILIRHF 329
+ V + ++ R + R A ++I G+G+ T +A D+
Sbjct: 125 VFAKYNVSRLQP-----YLKLRQALLEL--RPAKNVLIDGVLGSGK--TWVALDVC---- 171
Query: 330 ETSRSVDV----PRVVY--NIRQCRAGAVATSQQYAFIYRVLNVYAS 370
S V ++ N++ C + +Y++ + S
Sbjct: 172 ---LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Score = 42.1 bits (98), Expect = 3e-04
Identities = 39/331 (11%), Positives = 79/331 (23%), Gaps = 101/331 (30%)
Query: 12 DKNRYANVIPIPETRVRLCSGGEAASD---SEDYINA-----NYVRGPKGEEKFYIACQA 63
D N + ++R+ S S+ Y N N V+ K F ++C+
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWNAFNLSCK- 267
Query: 64 PLQNTIEDFWRMIWTHQSKVILMIT---ALFENSGPKGEEKFYIACQAPLQNTIEDFYFG 120
IL+ T + + +++
Sbjct: 268 --------------------ILLTTRFKQVTDFLSAATTTHI----------SLDHHSMT 297
Query: 121 -AMKQSL-IFAEF-STGPKG--EEKFYIACQ-APLQ------------NTIEDFWRMIWT 162
+ + ++ P+ E P + T D W+ +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPRE----VLTTNPRRLSIIAESIRDGLATW-DNWKHVNC 352
Query: 163 HQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFGDFQ----ITLKKREV--EKCADY 216
+ +E + L P+E F I +
Sbjct: 353 DK----------LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 217 LPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNL-----ETNLWREL-----THV 266
V H+ ++K+ I S+ ++ E L R +
Sbjct: 403 DVMVVVNKLHK-----YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 267 WYTNWPTTGVPNEESSLIAFLIEARAHMKGA 297
+ + +P I H+K
Sbjct: 458 TFDSD--DLIPPYLDQYFYSHI-GH-HLKNI 484
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 52.8 bits (127), Expect = 1e-08
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 17/100 (17%)
Query: 268 YTNWPTT--GVPNEE--SSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLACD 323
P + + + EA A + +HC+ G GRTGT+LAC
Sbjct: 59 LHRLRIPDFCPPAPDQIDRFVQIVDEANA--------RGEAVGVHCALGFGRTGTMLAC- 109
Query: 324 ILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYR 363
L++ R + + IR+ R G++ T +Q +++
Sbjct: 110 YLVKE----RGLAAGDAIAEIRRLRPGSIETYEQEKAVFQ 145
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 52.4 bits (125), Expect = 4e-08
Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 11/132 (8%)
Query: 243 EKYVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREA 302
+ +S ++ NL + + G P+ E + +
Sbjct: 80 TRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIA-----SCCEIMEELTTCL-KNY 133
Query: 303 GPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRA-GAVATSQQYAFI 361
+IH G GR+ V AC +L S ++ + + ++R R GA+ T +QY ++
Sbjct: 134 RKTLIHSYGGLGRSCLVAACLLL----YLSDTISPEQAIDSLRDLRGSGAIQTIKQYNYL 189
Query: 362 YRVLNVYASKLT 373
+ + A+ L+
Sbjct: 190 HEFRDKLAAHLS 201
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics,
medical structural genomics of pathogen protozoa, MSGPP,
unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Length = 167
Score = 48.8 bits (116), Expect = 3e-07
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 7/89 (7%)
Query: 271 WPTTGVPNEE--SSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLACDILIRH 328
+ P S + L A + + +HC G GR ++A L+ +
Sbjct: 76 FDDGAPPTRAVLDSWLKLLDTELARQQEDPSVPPPTIGVHCVAGLGRAPILVAL-ALVEY 134
Query: 329 FETSRSVDVPRVVYNIRQCRAGAVATSQQ 357
V + IR+ R GA+ +Q
Sbjct: 135 GN----VSALDAIALIREKRKGAINQTQM 159
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 1e-06
Identities = 54/354 (15%), Positives = 101/354 (28%), Gaps = 134/354 (37%)
Query: 57 FYIACQAPLQNTIEDFWRMIW-THQSKVILMITALFENSGPKGEEKFYIACQAPLQNTIE 115
+ + + E + T S+ + +TA+ IA + + E
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGL--VTAVA------------IA-ETD---SWE 290
Query: 116 DFYFGAMKQSLIFAEFSTGPKGEEKFYI--ACQ--APLQN----TIEDFWR--------M 159
F+ ++++++ F+I C P + +ED M
Sbjct: 291 SFF-VSVRKAITVL-----------FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 160 IWTHQSKVILMITAL----FENSVEKCADYLPPSEVL--------DCHRVFGD------F 201
L I+ L ++ V K +LP + + V G
Sbjct: 339 ---------LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL 389
Query: 202 QITLKKREVEKCAD----------------YLP---P--SEVLDC--HRVFGDFQITLKK 238
+TL+K + D +LP P S +L + D L K
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD----LVK 445
Query: 239 REVREKYVISSLQI-----------KNLETNLWRELTHVWYT---NWPTTGVPNEESSLI 284
V + +QI + L ++ + W TT + + ++
Sbjct: 446 NNV--SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT-TQFKATHIL 502
Query: 285 AFLIEARAHMKGAAGREA-GPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDV 337
F G G G L GTG ++A + + + D
Sbjct: 503 DF---------GPGGASGLGVLTHRNKDGTG-VRVIVAGTL-----DINPDDDY 541
Score = 43.9 bits (103), Expect = 8e-05
Identities = 51/320 (15%), Positives = 91/320 (28%), Gaps = 106/320 (33%)
Query: 13 KNRYANVIPIPETRVRLCSGGEAASDSE------DYINANYVRGPKGEEKFYIACQAPLQ 66
+ ++ ++P P + E + +E Y+ ++ V + + L
Sbjct: 34 QEQFNKILPEPTEG--FAADDEPTTPAELVGKFLGYV-SSLVE--PSKVGQFDQV---LN 85
Query: 67 NTIEDFWRMIWTHQSKVILMITALFENSGPKGEEK-------FYIACQA---PLQNTIED 116
+ +F I + A K + A P
Sbjct: 86 LCLTEFENCYLEGND--IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 117 FYFGAMK--QSLIFAEFSTGPKGEEKFYIACQAPLQNTIEDFW---RMIW-THQSKVILM 170
F A+ + + A F G G Q +D++ R ++ T+ +
Sbjct: 144 ALFRAVGEGNAQLVAIF--G--G------------QGNTDDYFEELRDLYQTYHV----L 183
Query: 171 ITALFENSVEKCADYLPPSEVLDCHRVFGD-FQIT--LKKREVEKCADYL---PPSEVLD 224
+ L + S E ++ + LD +VF I L+ DYL P S L
Sbjct: 184 VGDLIKFSAETLSELI--RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL- 240
Query: 225 CHRVFGDFQITLKKREVREKYVISSLQIKNLETNLWRELTHVWYTNWPTTGV-PNEESSL 283
I + +Q L H + G P E
Sbjct: 241 ---------IGV-------------IQ-----------LAH-YVVTAKLLGFTPGE---- 262
Query: 284 IAFLIEARAHMKGAAGREAG 303
R+++KGA G G
Sbjct: 263 ------LRSYLKGATGHSQG 276
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine
phosphatase IVA1...; structural genomics, NYSGXRC,
unknown function, PSI; 1.90A {Homo sapiens} SCOP:
c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Length = 159
Score = 46.5 bits (110), Expect = 2e-06
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 11/99 (11%)
Query: 265 HVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLACDI 324
HV + P+ + + +L + + G + +HC G GR ++A +
Sbjct: 63 HVLDWPFDDGAPPSNQI-VDDWLSLVKIKFREEPG---CCIAVHCVAGLGRAPVLVALAL 118
Query: 325 LIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYR 363
+ + +V IRQ R GA + Q ++ +
Sbjct: 119 IEGGMKYEDAVQF------IRQKRRGAFNSKQL-LYLEK 150
>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual
specific phosphatase, COMP with peptide, hydrolase;
2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A
Length = 189
Score = 46.2 bits (109), Expect = 4e-06
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 11/99 (11%)
Query: 265 HVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLACDI 324
HV + P+ + + +L + + G + +HC G GR ++A +
Sbjct: 84 HVLDWPFDDGAPPSNQI-VDDWLSLVKIKFREEPG---CCIAVHCVAGLGRAPVLVALAL 139
Query: 325 LIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIYR 363
+ + +V IRQ R GA + Q ++ +
Sbjct: 140 IEGGMKYEDAVQF------IRQKRRGAFNSKQL-LYLEK 171
>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle,
hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1
c.45.1.1 PDB: 1ohc_A 1ohd_A
Length = 348
Score = 43.1 bits (101), Expect = 9e-05
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 303 GPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQ----- 357
G + +H G GRTGT++AC +++H+ + + +R CR G+V QQ
Sbjct: 270 GAIAVHSKAGLGRTGTLIAC-YIMKHYRMT----AAETIAWVRICRPGSVIGPQQQFLVM 324
Query: 358 -YAFIYRVLNVYASKLTG 374
++ + + KL G
Sbjct: 325 KQTNLWLEGDYFRQKLKG 342
>1d5r_A Phosphoinositide phosphotase PTEN; C2 domain, phosphotidylinositol,
hydrolase; HET: TLA; 2.10A {Homo sapiens} SCOP: b.7.1.1
c.45.1.1
Length = 324
Score = 39.5 bits (91), Expect = 0.001
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 5/98 (5%)
Query: 265 HVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLACDI 324
V + P E + F + + + IHC G GRTG ++
Sbjct: 78 RVAQYPFEDHNPPQLEL-IKPFCEDLDQWLSE---DDNHVAAIHCKAGKGRTGVMICA-Y 132
Query: 325 LIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
L+ + ++ + +R V Q ++Y
Sbjct: 133 LLHRGKFLKAQEALDFYGEVRTRDKKGVTIPSQRRYVY 170
>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4;
1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A*
3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A
Length = 339
Score = 38.9 bits (89), Expect = 0.002
Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 9/103 (8%)
Query: 265 HVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLACDI 324
HV+ VP L+ F+ +A+ M IH G GRTGT+++ +
Sbjct: 86 HVYRVMIDDHNVPTLVD-LLKFIDDAKVWMTSDPDHVI---AIHSKGGKGRTGTLVSSWL 141
Query: 325 LIRHFETS-----RSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
L + R + + G SQ Y
Sbjct: 142 LEDGKFDTAKEALEYFGSRRTDFEVGDVFQGVETASQIRYVGY 184
>3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol
phosphatase, hydrolase; 2.30A {Mitsuokella multacida}
Length = 629
Score = 39.0 bits (90), Expect = 0.002
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 9/67 (13%)
Query: 268 YTNWPTT--GVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLACDIL 325
Y T P+ + I I M L HC G GRT +A +
Sbjct: 501 YYRIAATDHIWPSAAN--IDEFINFTRTMP-----ANAWLHFHCQAGAGRTTAYMAMYDM 553
Query: 326 IRHFETS 332
+++ + S
Sbjct: 554 MKNPDVS 560
Score = 37.5 bits (86), Expect = 0.007
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 301 EAGPLVIHCSPGTGRTGTVLACDILIRHFET 331
+ L HC G GRT + ++++ +
Sbjct: 231 KDAWLHYHCYAGMGRTTIFMVMHDILKNAKD 261
>3mmj_A MYO-inositol hexaphosphate phosphohydrolase; phytase, protein
tyrosine phosphatase, inositol phosphate, I phosphatase;
HET: IHP; 1.60A {Selenomonas ruminantium} PDB: 1u24_A
1u25_A* 1u26_A* 3o3l_A* 3moz_A* 2pt0_A 2psz_A 3d1h_A
3d1o_A 3d1q_A 2b4u_A 2b4p_A 2b4o_A
Length = 314
Score = 36.6 bits (84), Expect = 0.010
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 9/67 (13%)
Query: 268 YTNWPTT--GVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLACDIL 325
Y T P E+ + FL R + A L H G GRT + +
Sbjct: 184 YFRIAATDHVWPTPEN-IDRFLAFYRTLPQDAW------LHFHSEAGVGRTTAFMVMTDM 236
Query: 326 IRHFETS 332
+++ S
Sbjct: 237 LKNPSVS 243
>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine
phosphatase, P-loop, hydrolase; HET: PO4; 1.50A
{Autographa californicanucleopolyhedrovirus}
Length = 169
Score = 34.9 bits (80), Expect = 0.017
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 271 WPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLACDILIRHFE 330
P +P E + F+ + + G + +HC+ G RTG ++ L+
Sbjct: 86 VPGQTLPPESI-VQEFIDTVKEFTEKCPG---MLVGVHCTHGINRTGYMVCR-YLMHT-- 138
Query: 331 TSRSVDVPRVVYNIRQCRAGAV 352
+ + + R +
Sbjct: 139 --LGIAPQEAIDRFEKARGHKI 158
>3n0a_A Tyrosine-protein phosphatase auxilin; phosphatase-like domain, C2
domain, hydrolase; 2.20A {Bos taurus}
Length = 361
Score = 35.3 bits (80), Expect = 0.029
Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 8/98 (8%)
Query: 265 HVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLACDI 324
V +WP P+ + L A + V+HC G + ++
Sbjct: 82 RVSECSWPIRQAPSLHN-LFAVCRNMYNWLLQ---NPKNVCVVHCLDGRAASSILVGAMF 137
Query: 325 LIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
+ + ++ V + R G + ++
Sbjct: 138 IFCNLYST----PGPAVRLLYAKRPGIGLSPSHRRYLG 171
>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA
processing, multifunctional enzyme,
nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A
1i9t_A
Length = 241
Score = 34.3 bits (78), Expect = 0.041
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 303 GPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
+ +HC+ G RTG ++ ++ + + V Q R + ++
Sbjct: 142 ELIGVHCTHGFNRTGFLICAFLVEKMDWSIE-----AAVATFAQARPPGIYKGDYLKELF 196
Query: 363 R 363
R
Sbjct: 197 R 197
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.23
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 13/37 (35%)
Query: 123 KQSLIFAEFSTGPKGEE--KFYIACQAP---LQNTIE 154
KQ+L K + K Y AP ++ T+E
Sbjct: 19 KQAL--------KKLQASLKLYADDSAPALAIKATME 47
Score = 30.7 bits (68), Expect = 0.43
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 21/48 (43%)
Query: 243 EKYVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSLIAFLIEA 290
EK +K L+ +L +L Y + P A I+A
Sbjct: 18 EKQ-----ALKKLQASL--KL----YA--DDSA-P-------ALAIKA 44
Score = 28.0 bits (61), Expect = 3.5
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 14/39 (35%)
Query: 80 QSKVILMITALFENSGPKGEEKFYIACQAP---LQNTIE 115
Q+ + L + S K Y AP ++ T+E
Sbjct: 20 QA-----LKKL-QAS-----LKLYADDSAPALAIKATME 47
Score = 27.6 bits (60), Expect = 5.0
Identities = 6/18 (33%), Positives = 9/18 (50%), Gaps = 3/18 (16%)
Query: 56 KFYIACQAP---LQNTIE 70
K Y AP ++ T+E
Sbjct: 30 KLYADDSAPALAIKATME 47
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG
for eukaryotic structural genomics, phosphoprote
phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1
PDB: 2q47_A
Length = 151
Score = 30.9 bits (69), Expect = 0.36
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 9/58 (15%)
Query: 265 HVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVLAC 322
+ P +P+ + + ++ + P++IHC G RTG ++ C
Sbjct: 64 GIEGNKEPFVNIPDHKIRMALKVLLDEKN---------HPVLIHCKRGKHRTGCLVGC 112
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity
phosphatase, carbohydrate BIND hydrolase; 2.40A
{Arabidopsis thaliana}
Length = 294
Score = 31.3 bits (70), Expect = 0.44
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 2/62 (3%)
Query: 261 RELTHVWYTNWPTTGVPNEESSLIAFLIEARAHMKGAAGREAGPLVIHCSPGTGRTGTVL 320
++ + + + L L + A R G +H + G GR V
Sbjct: 67 KKYSDIQHIRCEIRDFDAF--DLRMRLPAVVGTLYKAVKRNGGVTYVHSTAGMGRAPAVA 124
Query: 321 AC 322
Sbjct: 125 LT 126
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase,
NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli}
PDB: 2v8z_A 3nev_A* 3n2x_A*
Length = 343
Score = 30.7 bits (70), Expect = 0.81
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
LIR+FE + SV +P ++YN
Sbjct: 145 LIRYFEQVADSVTLPVMLYNF 165
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus
influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A*
1f74_A* 1f7b_A*
Length = 293
Score = 30.2 bits (69), Expect = 1.1
Identities = 4/21 (19%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
+ +++T +VY+I
Sbjct: 118 IKHYYDTIIAETGSNMIVYSI 138
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism,
pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1
PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Length = 293
Score = 29.8 bits (68), Expect = 1.2
Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
L+++F+T P +YN
Sbjct: 111 LVKYFKTLCEVSPHPVYLYNY 131
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI
biosynthesis, diaminopimelate biosynthesis, lyase,
schiff B; 1.45A {Staphylococcus aureus} PDB: 3di1_A
3di0_A
Length = 292
Score = 30.1 bits (69), Expect = 1.2
Identities = 9/21 (42%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
L++HFE + +V +P V+YN+
Sbjct: 116 LVKHFEAIADAVKLPVVLYNV 136
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM
barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639}
PDB: 2nux_A 2nuy_A
Length = 288
Score = 29.9 bits (68), Expect = 1.2
Identities = 5/21 (23%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
L +++E +R +YN
Sbjct: 111 LAKYYEEIARISSHSLYIYNY 131
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel,
thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB:
2r94_A
Length = 286
Score = 29.8 bits (68), Expect = 1.4
Identities = 5/21 (23%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
+ ++F +V +P +YN
Sbjct: 110 IAKYFRDLCSAVSIPVFLYNY 130
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium
tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A
{Agrobacterium tumefaciens str}
Length = 332
Score = 29.9 bits (68), Expect = 1.4
Identities = 5/21 (23%), Positives = 9/21 (42%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
HF + + +P +YN
Sbjct: 148 AYHHFAAVAGATALPLAIYNN 168
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A
{Pseudomonas aeruginosa}
Length = 315
Score = 29.8 bits (68), Expect = 1.4
Identities = 5/21 (23%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
+ +H+ ++ VP ++YN
Sbjct: 138 VFQHYRAVGEAIGVPVMLYNN 158
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel,
schiff base, hydroxyproline metabolis; HET: KPI; 1.97A
{Homo sapiens} PDB: 3s5n_A
Length = 307
Score = 29.6 bits (67), Expect = 1.4
Identities = 6/21 (28%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
LI H+ + +P V+Y++
Sbjct: 130 LIHHYTKVADLSPIPVVLYSV 150
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine
biosynthesis, amino-acid biosynthesis, diaminopimelate
biosynthesis; HET: KPI CME; 2.10A {Mycobacterium
tuberculosis} PDB: 1xxx_A
Length = 304
Score = 29.6 bits (67), Expect = 1.5
Identities = 6/21 (28%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
L HF + + ++P ++Y+I
Sbjct: 129 LQAHFTAVADATELPMLLYDI 149
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A
C-terminal alpha-helical segment, amino-acid
biosynthesis, cytoplasm; HET: MCL; 2.20A
{Corynebacterium glutamicum}
Length = 304
Score = 29.6 bits (67), Expect = 1.5
Identities = 7/21 (33%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
L+ HF + + +VP +Y+I
Sbjct: 130 LLAHFGAIAAATEVPICLYDI 150
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base,
lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Length = 292
Score = 29.5 bits (67), Expect = 1.5
Identities = 7/21 (33%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
+ +HF+ + +P +VYNI
Sbjct: 114 IYQHFKAIDAASTIPIIVYNI 134
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional
regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis}
SCOP: a.4.5.32 d.58.4.2
Length = 144
Score = 28.7 bits (65), Expect = 1.5
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 202 QITLKKREVEKCADY---LPPSEVLDCHRVFGDFQITLK 237
+ T+K + E+ Y LP + C+R+ G LK
Sbjct: 70 EATVKNADYERFKSYIQTLP--NIEFCYRIAGAACYMLK 106
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 175 FENSVEKCADYLPPSEVLDCHRVFGDFQITLK 206
F++ ++ + C+R+ G LK
Sbjct: 81 FKSYIQTL------PNIEFCYRIAGAACYMLK 106
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis,
diaminopimelate biosyn lyase, lysine biosynthesis,
schiff base; 1.50A {Hahella chejuensis}
Length = 297
Score = 29.8 bits (68), Expect = 1.5
Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
L +HF+ ++D+P +VYNI
Sbjct: 114 LYQHFKMVHDAIDIPIIVYNI 134
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM
barrel, NYSGXRC, PSI-2, structural genomics; 1.90A
{Oceanobacillus iheyensis HTE831}
Length = 314
Score = 29.5 bits (67), Expect = 1.5
Identities = 3/21 (14%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
+ ++ ++D P ++Y
Sbjct: 125 AVEYYRNIIEALDAPSIIYFK 145
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis,
pyruvate, TIM barrel, NYSGXRC, PSI2., structural
genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris}
Length = 300
Score = 29.8 bits (68), Expect = 1.5
Identities = 5/21 (23%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
+ +F + +V++P V+Y
Sbjct: 118 IESYFRAIADAVEIPVVIYTN 138
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid
biosynthesis, cytoplasm, diaminopimelate biosynthesis,
lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB:
3bi8_A* 3ird_A*
Length = 291
Score = 29.6 bits (67), Expect = 1.6
Identities = 8/21 (38%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
L++HF+ S +V P ++YN+
Sbjct: 115 LVKHFKAVSDAVSTPIIIYNV 135
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei
unknown function, MLTA, bacteria autolysis,
peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB:
2bh0_A
Length = 208
Score = 29.4 bits (66), Expect = 1.6
Identities = 3/32 (9%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 247 ISSLQIKNLETNLWRELTHVWYTNWPTTGVPN 278
+ ++ + W + + Y ++ +T +
Sbjct: 138 VMKMEYEK--DGKWINMEKMDYNHFVSTNLGT 167
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Length = 315
Score = 29.4 bits (67), Expect = 1.6
Identities = 7/21 (33%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
L HF + ++++ +P ++YNI
Sbjct: 136 LYTHFSSIAKAISIPIIIYNI 156
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine
biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter
baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A*
3tdf_A 3u8g_A 3uqn_A 4dxv_A
Length = 291
Score = 29.4 bits (67), Expect = 1.8
Identities = 6/21 (28%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
L +H++ + +V++P ++YN+
Sbjct: 115 LYQHYKAIAEAVELPLILYNV 135
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J
protein structure initiative, joint center for
structural G lyase; HET: MCL; 1.80A {Thermotoga
maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Length = 306
Score = 29.6 bits (67), Expect = 1.8
Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
L +H++ S D+ VVYN+
Sbjct: 126 LYQHYKYISERTDLGIVVYNV 146
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase;
HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A
1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A*
3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A
3den_A* 2a6l_A 2a6n_A 3g0s_A
Length = 292
Score = 29.5 bits (67), Expect = 1.8
Identities = 7/21 (33%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
L +HF+ + D+P+++YN+
Sbjct: 115 LYQHFKAIAEHTDLPQILYNV 135
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid
biosynthesis, diaminopimelate biosynthesis, lyase,
lysine biosynthesis; HET: MSE; 1.80A {Campylobacter
jejuni} PDB: 3ler_A*
Length = 301
Score = 29.4 bits (67), Expect = 1.8
Identities = 8/21 (38%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
L H++ ++SVD+P ++YN+
Sbjct: 122 LYEHYKAIAQSVDIPVLLYNV 142
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC
family Gln binding, structural genomics, NPPSFA; HET:
GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A*
2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Length = 150
Score = 28.7 bits (65), Expect = 1.9
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 6/32 (18%)
Query: 175 FENSVEKCADYLPPSEVLDCHRVFGDFQITLK 206
N + + +P V + V GD +
Sbjct: 81 LGNKLAQ----IP--GVWGVYFVLGDNDFIVM 106
Score = 27.9 bits (63), Expect = 3.8
Identities = 7/41 (17%), Positives = 12/41 (29%), Gaps = 7/41 (17%)
Query: 202 QITLKK-----REVEKCADYLPPSEVLDCHRVFGDFQITLK 237
+ K E+ +P V + V GD +
Sbjct: 68 SVKAKYGKNYHVELGNKLAQIP--GVWGVYFVLGDNDFIVM 106
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel
fold, structural genomics, NPPSFA; 2.20A
{Methanocaldococcus jannaschii DSM2661}
Length = 289
Score = 29.4 bits (67), Expect = 1.9
Identities = 8/21 (38%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
L +HF + S+++P V+YN+
Sbjct: 114 LRKHFGKVAESINLPIVLYNV 134
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel,
cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A*
3noe_A 3ps7_A* 3s8h_A
Length = 314
Score = 29.4 bits (67), Expect = 1.9
Identities = 6/21 (28%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
+ +HF + +V +P+++YN+
Sbjct: 137 MYQHFRHIAEAVAIPQILYNV 157
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target
9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16}
Length = 316
Score = 29.5 bits (67), Expect = 2.0
Identities = 5/21 (23%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
+ +F ++D P +VY
Sbjct: 125 VYAYFRDIIEALDFPSLVYFK 145
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding,
transcriptional regulatory protein, archaeal; HET: DNA;
2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
PDB: 1ri7_A* 2zny_A* 2znz_A*
Length = 171
Score = 28.8 bits (65), Expect = 2.0
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 202 QITLKK---REVEKCADYLPPSEVLDCHRVFGDFQITLK 237
+ +K EV P E+++ + GD+ + +K
Sbjct: 92 LVKVKAGKYSEVASNLAKYP--EIVEVYETTGDYDMVVK 128
Score = 26.8 bits (60), Expect = 7.5
Identities = 4/17 (23%), Positives = 11/17 (64%)
Query: 190 EVLDCHRVFGDFQITLK 206
E+++ + GD+ + +K
Sbjct: 112 EIVEVYETTGDYDMVVK 128
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.90A {Aquifex aeolicus}
Length = 294
Score = 29.4 bits (67), Expect = 2.1
Identities = 10/21 (47%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
L HF+T ++ VD+P ++YNI
Sbjct: 114 LYEHFKTVAQEVDIPIIIYNI 134
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel,
amino-acid biosynthesis, diaminopimelate biosynthesis;
2.00A {Neisseria meningitidis serogroup B}
Length = 297
Score = 29.4 bits (67), Expect = 2.1
Identities = 6/21 (28%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
+ +HF+T + + +P ++YN+
Sbjct: 121 IYQHFKTIAEATSIPMIIYNV 141
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural
genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE
GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32
d.58.4.2
Length = 151
Score = 28.7 bits (65), Expect = 2.1
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 202 QITLKK---REVEKCADYLPPSEVLDCHRVFGDFQITLK 237
+ +K EV P E+++ + GD+ + +K
Sbjct: 72 LVKVKAGKYSEVASNLAKYP--EIVEVYETTGDYDMVVK 108
Score = 26.7 bits (60), Expect = 8.3
Identities = 4/17 (23%), Positives = 11/17 (64%)
Query: 190 EVLDCHRVFGDFQITLK 206
E+++ + GD+ + +K
Sbjct: 92 EIVEVYETTGDYDMVVK 108
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine
biosynthesis;spine, lyase; 1.94A {Bacillus anthracis}
SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Length = 301
Score = 29.0 bits (66), Expect = 2.1
Identities = 6/21 (28%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
+ +HF+ + S +P ++YN+
Sbjct: 126 MYQHFKAIAESTPLPVMLYNV 146
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex,
pyruvate, lyase; HET: KPI; 1.80A {Azospirillum
brasilense} PDB: 3fkk_A
Length = 309
Score = 28.9 bits (65), Expect = 2.3
Identities = 3/21 (14%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
+ + S ++ +P +V +
Sbjct: 125 IFEFYARVSDAIAIPIMVQDA 145
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI
biosynthesis, schiff base, cytoplasm, diaminopimelate
biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Length = 311
Score = 29.1 bits (66), Expect = 2.5
Identities = 7/21 (33%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 325 LIRHFET-SRSVDVPRVVYNI 344
+ +HF+ + + D+P ++YNI
Sbjct: 122 MYQHFKAIADASDLPIIIYNI 142
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family,
transcription, DNA- binding, transcription regulation;
2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Length = 152
Score = 28.3 bits (64), Expect = 2.9
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 6/40 (15%)
Query: 202 QITLKK----REVEKCADYLPPSEVLDCHRVFGDFQITLK 237
I LK + L EV + + G + I +K
Sbjct: 73 GIILKSAKDYPSALAKLESLD--EVTEAYYTTGHYSIFIK 110
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM
barrel), structural genomics, PSI-2, structure
initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens
str}
Length = 344
Score = 28.9 bits (65), Expect = 3.2
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 325 LIRHFET--SRSVDVPRVVYNI 344
HF+ S + ++P V+YN
Sbjct: 138 QKAHFKAILSAAPEIPAVIYNS 159
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A
{Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A*
1y8z_A*
Length = 401
Score = 28.7 bits (63), Expect = 3.3
Identities = 25/120 (20%), Positives = 39/120 (32%), Gaps = 12/120 (10%)
Query: 149 LQNTIEDFWRMIWTHQ-SKVILMITALFENSVEKCADYLPPSEVLDCHRVFGDFQITLKK 207
L N +++ H S + L E +V + +V+ H GDF L K
Sbjct: 101 LDNIKPSIRVVVYQHDHSVLSLRRNLGLEETVRRA-------DVIFSHSDNGDFNKVLMK 153
Query: 208 REVEKCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLWRELTHVW 267
+ E +FQ + +VR Y + N+ N W T W
Sbjct: 154 EWYPETVSLFDDIEEA---PTVYNFQPPMDIVKVRSTY-WKDVSEINMNINRWIGRTTTW 209
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin,
immunoglobulin-like fold, PSI beta barrel, structural
genomics; HET: NAG; 2.90A {Phleum pratense} SCOP:
b.7.3.1 b.52.1.3
Length = 241
Score = 28.3 bits (62), Expect = 4.4
Identities = 9/53 (16%), Positives = 15/53 (28%)
Query: 231 DFQITLKKREVREKYVISSLQIKNLETNLWRELTHVWYTNWPTTGVPNEESSL 283
+ L + V + ++ IK + W EL W W
Sbjct: 158 PNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPF 210
>2w25_A Probable transcriptional regulatory protein; transcription
regulation, mutant, RV3291C, Glu104Ala, DNA-binding;
2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A*
2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A
2qz8_A
Length = 150
Score = 27.6 bits (62), Expect = 4.4
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 6/32 (18%)
Query: 175 FENSVEKCADYLPPSEVLDCHRVFGDFQITLK 206
+E EV C+ V G+ L
Sbjct: 84 APARLEHI------EEVESCYSVAGEASYVLL 109
Score = 27.2 bits (61), Expect = 5.7
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 221 EVLDCHRVFGDFQITLK 237
EV C+ V G+ L
Sbjct: 93 EVESCYSVAGEASYVLL 109
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family;
2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Length = 141
Score = 27.5 bits (62), Expect = 4.5
Identities = 7/39 (17%), Positives = 11/39 (28%), Gaps = 5/39 (12%)
Query: 202 QITLKK---REVEKCADYLPPSEVLDCHRVFGDFQITLK 237
+ K EV + V + + GD I
Sbjct: 69 GVDTKPEKLFEVAEKLKEYD--FVKELYLSSGDHMIMAV 105
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix,
transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Length = 163
Score = 27.6 bits (62), Expect = 5.1
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 6/27 (22%)
Query: 175 FENSVEKCADYLPPSEVLDCHRVFGDF 201
F +V+K E+ +CH V GDF
Sbjct: 92 FNTAVQKL------EEIQECHLVSGDF 112
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom
protein structure initiative, midwest center for
structural genomics; 2.30A {Agrobacterium tumefaciens
str}
Length = 162
Score = 27.5 bits (62), Expect = 5.2
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 6/27 (22%)
Query: 175 FENSVEKCADYLPPSEVLDCHRVFGDF 201
F V + P EV++ +R+ GD
Sbjct: 82 FSEVVSE----FP--EVVEFYRMSGDV 102
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol
phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus
musculus} PDB: 3rgq_A*
Length = 157
Score = 27.4 bits (61), Expect = 5.2
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Query: 303 GPLVIHCSPGTGRTGTVLACDILIRHFETSRSVDVPRVVYNIRQCRAGAVATSQQYAFIY 362
+ +HC G R+ T++A LI+ + + I + R+ Q
Sbjct: 90 QCVYVHCKAGRSRSATMVAA-YLIQV----HNWSPEEAIEAIAKIRSHISIRPSQ----L 140
Query: 363 RVLNVYASKLTGGA 376
VL + ++T A
Sbjct: 141 EVLKEFHKEITARA 154
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A
immunoglobulin L sandwich, allergen; HET: NAG MAN FCA;
2.75A {Zea mays}
Length = 245
Score = 27.8 bits (61), Expect = 5.8
Identities = 8/60 (13%), Positives = 21/60 (35%)
Query: 212 KCADYLPPSEVLDCHRVFGDFQITLKKREVREKYVISSLQIKNLETNLWRELTHVWYTNW 271
+C V + + + + V + I ++I++ + W+ + W W
Sbjct: 139 RCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIW 198
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate
aldolase; sequestered tunnel, substrate channeling; HET:
NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Length = 312
Score = 28.0 bits (62), Expect = 5.9
Identities = 15/71 (21%), Positives = 21/71 (29%), Gaps = 10/71 (14%)
Query: 152 TIEDFWRMIWTHQSKV---ILMITALFENSVEKCADYLPPSEVLDCHRVFGDFQITLKKR 208
M+ Q+ V L F+ E +P + + L
Sbjct: 223 VAASVAEMVQAVQAYVPGYRLKQQVQFDVIPESAPLNIPGLGRFSGLKTS----VFL--- 275
Query: 209 EVEKCADYLPP 219
EVE A YLP
Sbjct: 276 EVEGAAHYLPA 286
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 28.1 bits (62), Expect = 6.6
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 19 VIPIPETRVRLCSGGEAASDSEDYINANYVRGPKGEEKFYIACQ--APLQNTIEDFWRMI 76
V+P+P VR + S ED + K Q AP + + ++ +++
Sbjct: 244 VLPVPPPSVRPSISVDGTSRGEDDLTHKLSDIIKANANVRRCEQEGAP-AHIVSEYEQLL 302
Query: 77 WTHQSKVILMI 87
Q V +
Sbjct: 303 ---QFHVATYM 310
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 27.8 bits (62), Expect = 7.1
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 277 PNEESSLIAFLIEARAHMKGAAGREAG--PLVIHCSPGTGRTGTVLACDILIRHFETSRS 334
P E++ IA A H EAG ++ G GR G L I + S
Sbjct: 684 PAEQTPRIAREAVALLH-------EAGIPKSALYLVTGDGRIGAALTAHPDIAGVVFTGS 736
Query: 335 VDVPRVVY 342
+V R +
Sbjct: 737 TEVARSIN 744
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu
genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A
2p6t_A
Length = 162
Score = 26.8 bits (60), Expect = 9.3
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 9/43 (20%)
Query: 159 MIWTHQSKVILMITALFENSVEKCADYLPPSEVLDCHRVFGDF 201
+ ++K F SV K P EVL C + G+
Sbjct: 75 RVSIRKAKDAR---EDFAASVRK----WP--EVLSCFALTGET 108
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.422
Gapped
Lambda K H
0.267 0.0418 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,982,943
Number of extensions: 354958
Number of successful extensions: 987
Number of sequences better than 10.0: 1
Number of HSP's gapped: 784
Number of HSP's successfully gapped: 199
Length of query: 380
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 285
Effective length of database: 4,049,298
Effective search space: 1154049930
Effective search space used: 1154049930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)