BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10361
(236 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 20/157 (12%)
Query: 75 NDQRFRVINNPTSDDWTLQ---LKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDG 131
N QRF I S L+ L+ P +D IYEC V+ PH ++ + VL
Sbjct: 48 NSQRFETIEFDESAGAVLRIQPLRTP--RDENIYEC-VAQNPHGEVTVHAKLTVL----- 99
Query: 132 KYLLVPEPETDIIGGPEV-FIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGG 190
+ +P +I GP++ +E T + C +P+P I W + + + G
Sbjct: 100 REDQLPPGFPNIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDPSTSNGR 157
Query: 191 VNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA 227
+ + G L I+ + +D GKY+C +NS
Sbjct: 158 IKQLRSGG------LQIESSEETDQGKYECVASNSAG 188
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 25/204 (12%)
Query: 30 NPTSDDWTLQLKYPQHKDTGI------YECQVSFVRHRDIHLLTTGRYTYTNDQRFRVIN 83
P SD + +K P+ + TG+ + CQ + I + G+ + QRF VI
Sbjct: 1 GPGSDSKPVFVKVPEDQ-TGLSGGVASFVCQATGEPKPRITWMKKGKKVSS--QRFEVIE 57
Query: 84 NPTSDDWTLQLKYPQ-HKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETD 142
L+++ + +D IYEC + + + + T L + + L P D
Sbjct: 58 FDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEIN----TSAKLSVLEEDQLPSGFPTID 113
Query: 143 IIGGPEV-FIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETT 201
+ GP++ +E G T + C +P+P I W + + + G + +
Sbjct: 114 M--GPQLKVVEKGRTATMLCAAGGNPDP--EISWFKDFLPVDPAASNGRIKQLRS----- 164
Query: 202 VSYLLIQKARPSDNGKYQCNPANS 225
L I+ + SD GKY+C NS
Sbjct: 165 -GALQIESSEESDQGKYECVATNS 187
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 27/130 (20%)
Query: 100 KDTGIYECQV--STTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTI 157
+D G+Y C+V Q H + LTVV + KY PE + ++ G +
Sbjct: 280 EDEGVYTCEVDNGVGKPQKHSLKLTVV----SAPKYEQKPEKV--------IVVKQGQDV 327
Query: 158 NLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGK 217
+ C V P P + W+HN +S GG +T+ G L+I+ + D G
Sbjct: 328 TIPCKVTGLPAP--NVVWSHNAKPLS-----GGRATVTDSG------LVIKGVKNGDKGY 374
Query: 218 YQCNPANSQA 227
Y C N
Sbjct: 375 YGCRATNEHG 384
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 17/157 (10%)
Query: 75 NDQRFRVINNPTSDDWTLQ---LKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDG 131
++QRF VI L+ L+ P +D IYEC S + I ++ + V+ +
Sbjct: 48 SNQRFEVIEFDDGSGSVLRIQPLRTP--RDEAIYECVAS---NNVGEISVSTRLTVLRED 102
Query: 132 KYLLVPEPETDIIGGPEV-FIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGG 190
+ +P I GP++ +E T + C +P+P I W + + + G
Sbjct: 103 Q---IPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDTSNNNGR 157
Query: 191 VNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA 227
+ + + ++ L I+++ SD GKY+C NS
Sbjct: 158 IKQLRSE---SIGALQIEQSEESDQGKYECVATNSAG 191
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 83/202 (41%), Gaps = 25/202 (12%)
Query: 32 TSDDWTLQLKYPQHKDTGI------YECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNP 85
T D + +K P+ + TG+ + CQ + I + G+ + QRF VI
Sbjct: 2 TGDSKPVFIKVPEDQ-TGLSGGVASFVCQATGEPKPRITWMKKGKKV--SSQRFEVIEFD 58
Query: 86 TSDDWTLQLKYPQ-HKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDII 144
L+++ + +D IYEC + + + + T L + + + L P D+
Sbjct: 59 DGAGSVLRIQPLRVQRDEAIYECTATNSLGEIN----TSAKLSVLEEEQLPPGFPSIDM- 113
Query: 145 GGPEV-FIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVS 203
GP++ +E T + C +P+P I W + + + G + +
Sbjct: 114 -GPQLKVVEKARTATMLCAAGGNPDP--EISWFKDFLPVDPATSNGRIKQLRS------G 164
Query: 204 YLLIQKARPSDNGKYQCNPANS 225
L I+ + SD GKY+C NS
Sbjct: 165 ALQIESSEESDQGKYECVATNS 186
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 143 IIGG-PEVF-IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGET 200
++GG P+V I+ G +NLTC V +PP + W NE ++ D N+ E G T
Sbjct: 224 VLGGLPDVVTIQEGKALNLTCNVW--GDPPPEVSWLKNEKALASDDH---CNLKFEAGRT 278
Query: 201 TVSYLLIQKARPSDNGKY 218
+Y I +D+GKY
Sbjct: 279 --AYFTINGVSTADSGKY 294
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 19/165 (11%)
Query: 72 TYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDG 131
+Y +++RF + + L + + D G Y C V+ T + +++ NDG
Sbjct: 144 SYQDNRRFV-----SQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDG 198
Query: 132 KYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAI-ISYDSQRGG 190
+ EP+ ++ V E G+T+ L C +P P I W + I+ ++R
Sbjct: 199 -VMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVP--TILWRRADGKPIARKARRHK 255
Query: 191 VNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAKSVMVNVL 235
N I E I + D G Y+C NS+ K+V L
Sbjct: 256 SNGILE----------IPNFQQEDAGSYECVAENSRGKNVAKGQL 290
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 19/165 (11%)
Query: 72 TYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDG 131
+Y +++RF + + L + + D G Y C V+ T + +++ NDG
Sbjct: 143 SYQDNRRFV-----SQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDG 197
Query: 132 KYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAI-ISYDSQRGG 190
+ EP+ ++ V E G+T+ L C +P P I W + I+ ++R
Sbjct: 198 -VMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVP--TILWRRADGKPIARKARRHK 254
Query: 191 VNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAKSVMVNVL 235
N I E I + D G Y+C NS+ K+V L
Sbjct: 255 SNGILE----------IPNFQQEDAGSYECVAENSRGKNVAKGQL 289
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 16/148 (10%)
Query: 80 RVINNPTSDDWTLQLKYPQHKDTGIYECQV--STTPHQ-----AHYIYLTVVVLVINDGK 132
RV T + LQ+ P D G Y ++ T HQ + Y +
Sbjct: 49 RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQ 108
Query: 133 YLLVPEPETDIIGG-PEVF-IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGG 190
+ + ++GG P+V I+ G +NLTC V +PP + W NE + +Q
Sbjct: 109 AAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVW--GDPPPEVSWLKNEKAL---AQTDH 163
Query: 191 VNVITEKGETTVSYLLIQKARPSDNGKY 218
N+ E G T +Y I +D+GKY
Sbjct: 164 CNLKFEAGRT--AYFTINGVSTADSGKY 189
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 69/180 (38%), Gaps = 31/180 (17%)
Query: 47 DTGIYECQVSF-VRHRDIHLLT-TGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGI 104
++ + CQV+ + +DI + G N QR V+ N D TL + D GI
Sbjct: 18 ESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWN-DDDSSTLTIYNANIDDAGI 76
Query: 105 YECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVR 164
Y+C V T TV V + + P P+ + G + C V
Sbjct: 77 YKCVV--TAEDGTQSEATVNVKIFQKLMFKNAPTPQE---------FKEGEDAVIVCDV- 124
Query: 165 FSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTV----SYLLIQKARPSDNGKYQC 220
S PP I W H G +VI +K + +YL I+ + +D G Y+C
Sbjct: 125 VSSLPPT-IIWKHK-----------GRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRC 172
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 69/180 (38%), Gaps = 31/180 (17%)
Query: 47 DTGIYECQVSF-VRHRDIHLLT-TGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGI 104
++ + CQV+ + +DI + G N QR V+ N D TL + D GI
Sbjct: 18 ESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWN-DDDSSTLTIYNANIDDAGI 76
Query: 105 YECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVR 164
Y+C V T TV V + + P P+ + G + C V
Sbjct: 77 YKCVV--TAEDGTQSEATVNVKIFQKLMFKNAPTPQE---------FKEGEDAVIVCDV- 124
Query: 165 FSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTV----SYLLIQKARPSDNGKYQC 220
S PP I W H G +VI +K + +YL I+ + +D G Y+C
Sbjct: 125 VSSLPPT-IIWKHK-----------GRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRC 172
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 148 EVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLI 207
+VF++ G T+ C R +PP I W + G + V + G V Y +
Sbjct: 394 QVFVDEGHTVQFVC--RADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD-GTLEVRYAQV 450
Query: 208 QKARPSDNGKYQCNPANSQAKSVM 231
Q DNG Y C AN+ M
Sbjct: 451 Q-----DNGTYLCIAANAGGNDSM 469
>pdb|4FOM|A Chain A, Crystal Structure Of Human Nectin-3 Full Ectodomain
(D1-D3)
Length = 308
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 81 VINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPE 140
+ N + +D T+ L D+G Y C+ T P TV VLV EP
Sbjct: 65 LFKNYSLNDATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLV----------EPT 114
Query: 141 TDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFW 175
+I GP+ I+ G+ + + +P A+I W
Sbjct: 115 VSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDW 149
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 12/88 (13%)
Query: 89 DWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPE 148
D ++ L+ D G YEC+VST P + L + VLV P + GP
Sbjct: 78 DGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLV----------PPLPSLNPGPA 127
Query: 149 VFIENGSTINLTCVVRFSPEPPAYIFWN 176
+ G T+ +C SP P + W+
Sbjct: 128 LEEGQGLTLAASCTAEGSPAP--SVTWD 153
>pdb|2QQN|H Chain H, Neuropilin-1 B1 Domain In Complex With A Vegf-Blocking Fab
Length = 230
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 19/122 (15%)
Query: 68 TGRYTYTNDQ---RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVV 124
G YT D RF + + + + LQ+ + +DT +Y C P Y ++ V
Sbjct: 54 AGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARGELP----YYRMSKV 109
Query: 125 VLVINDGKYLLVPEPETDIIGGPEVF-------IENGSTINLTCVVR-FSPEPPAYIFWN 176
+ V G + V T GP VF +G T L C+V+ + PE P + WN
Sbjct: 110 MDVWGQGTLVTVSSASTK---GPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PVTVSWN 165
Query: 177 HN 178
Sbjct: 166 SG 167
>pdb|3BEW|A Chain A, 10mer Crystal Structure Of Chicken Mhc Class I Haplotype
B21
pdb|3BEW|D Chain D, 10mer Crystal Structure Of Chicken Mhc Class I Haplotype
B21
Length = 271
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 147 PEVFI---ENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVS 203
PEV + E + L+C P + W + A+ D+Q GG I G+ T
Sbjct: 182 PEVRVWGKEADGILTLSCRAHGFYPRPIVVSWLKDGAVRGQDAQSGG---IVPNGDGTYH 238
Query: 204 YLLIQKARPSDNGKYQCN 221
+ A+P D KYQC
Sbjct: 239 TWVTIDAQPGDGDKYQCR 256
>pdb|3BEV|A Chain A, 11mer Structure Of An Mhc Class I Molecule From B21
Chickens Illustrate Promiscuous Peptide Binding
Length = 274
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 147 PEVFI---ENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVS 203
PEV + E + L+C P + W + A+ D+Q GG I G+ T
Sbjct: 182 PEVRVWGKEADGILTLSCRAHGFYPRPIVVSWLKDGAVRGQDAQSGG---IVPNGDGTYH 238
Query: 204 YLLIQKARPSDNGKYQCN 221
+ A+P D KYQC
Sbjct: 239 TWVTIDAQPGDGDKYQCR 256
>pdb|2YF6|A Chain A, Complex Of A B21 Chicken Mhc Class I Molecule And A 10mer
Chicken Peptide
pdb|2YEZ|A Chain A, Complex Of A B21 Chicken Mhc Class I Molecule And A 10mer
Chicken Peptide
pdb|2YF1|A Chain A, Complex Of A B21 Chicken Mhc Class I Molecule And A 11mer
Chicken Peptide
pdb|2YF5|A Chain A, Complex Of A B21 Chicken Mhc Class I Molecule And A 10mer
Chicken Peptide
Length = 329
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 147 PEVFI---ENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVS 203
PEV + E + L+C P + W + A+ D+Q GG I G+ T
Sbjct: 203 PEVRVWGKEADGILTLSCRAHGFYPRPIVVSWLKDGAVRGQDAQSGG---IVPNGDGTYH 259
Query: 204 YLLIQKARPSDNGKYQC 220
+ A+P D KYQC
Sbjct: 260 TWVTIDAQPGDGDKYQC 276
>pdb|2X7L|H Chain H, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|A Chain A, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|C Chain C, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|J Chain J, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|E Chain E, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|G Chain G, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
Length = 231
Score = 33.9 bits (76), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 20/119 (16%)
Query: 68 TGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLV 127
+G Y + + R + TS TL+L P +DT Y C TT + I+
Sbjct: 55 SGSEWYASWAKGRFTISDTSTTVTLKLTSPTTEDTATYFCAADTTDNGYFTIW------- 107
Query: 128 INDGKYLLVPEPETDIIGGPEVF-------IENGSTINLTCVVR-FSPEPPAYIFWNHN 178
G + V T GP VF +G T L C+V+ + PE P + WN
Sbjct: 108 -GPGTLVTVSSASTK---GPSVFPLAPSAKSTSGGTAALGCLVKDYFPE-PVTVSWNSG 161
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 22/132 (16%)
Query: 99 HK-DTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTI 157
HK D G+Y+C+ S I T V+V ++L E T +G T+
Sbjct: 90 HKPDEGLYQCEASLG-DSGSIISRTAKVMVAGPLRFLSQTESITAFMG---------DTV 139
Query: 158 NLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGK 217
L C V P P I W N+ ++ V V+ L I + +P D+G
Sbjct: 140 LLKCEVIGDPMP--TIHWQKNQQDLNPIPGDSRVVVLPSGA------LQISRLQPGDSGV 191
Query: 218 YQC---NPANSQ 226
Y+C NPA+++
Sbjct: 192 YRCSARNPASTR 203
>pdb|1YPZ|E Chain E, Immune Receptor
pdb|1YPZ|G Chain G, Immune Receptor
Length = 207
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 91 TLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVF 150
TL ++ Q +D+G Y C + T H + L LV G + V EP++ P VF
Sbjct: 72 TLHIRDAQLEDSGTYFC-AADTWHISEGYELGTDKLVFGQGTQVTV-EPKSQPPAKPSVF 129
Query: 151 IENGSTINLTCVVR-FSPEPPAYIFWNHNEAIISYD 185
I T N+ C+V+ F P+ I ++ I+ +D
Sbjct: 130 IMKNGT-NVACLVKDFYPK-EVTISLRSSKKIVEFD 163
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 150 FIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQK 209
IE G T+ +TC +P P I+W N+ + + R + +L I+
Sbjct: 121 VIEVGHTVLMTCKAIGNPTP--NIYWIKNQTKVDMSNPRYSLKD---------GFLQIEN 169
Query: 210 ARPSDNGKYQCNPANSQA 227
+R D GKY+C NS
Sbjct: 170 SREEDQGKYECVAENSMG 187
>pdb|1FRG|H Chain H, Crystal Structure, Sequence, And Epitope Mapping Of A
Peptide Complex Of An Anti-Influenza Ha Peptide Antibody
Fab 26(Slash)9: Fine-Tuning Antibody Specificity
Length = 220
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 19/138 (13%)
Query: 55 VSFVRH---RDIHLLTT----GRYTYTNDQ---RFRVINNPTSDDWTLQLKYPQHKDTGI 104
+S+VRH + + + T G YTY D RF + + + L++ + +D G+
Sbjct: 34 MSWVRHTPDKRLEWVATISNGGGYTYYQDSVKGRFTISRDNAKNTLFLEMTSLKSEDAGL 93
Query: 105 YECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPE--PETDIIGGPEVFIENGSTINLTCV 162
Y C + + Y LV P P + G GS++ L C+
Sbjct: 94 YYCARRERYDEKGFAYWGRGTLVTVSAAKTTAPSVYPLAPVCGD-----TTGSSVTLGCL 148
Query: 163 VR-FSPEPPAYIFWNHNE 179
V+ + PE P + WN
Sbjct: 149 VKGYFPE-PVTLTWNSGS 165
>pdb|4E0R|A Chain A, Structure Of The Chicken Mhc Class I Molecule Bf20401
pdb|4E0R|D Chain D, Structure Of The Chicken Mhc Class I Molecule Bf20401
pdb|4G42|A Chain A, Structure Of The Chicken Mhc Class I Molecule Bf20401
Complexed To Pepitde P8d
pdb|4G42|D Chain D, Structure Of The Chicken Mhc Class I Molecule Bf20401
Complexed To Pepitde P8d
pdb|4G43|A Chain A, Structure Of The Chicken Mhc Class I Molecule Bf20401
Complexed To P5e
pdb|4G43|D Chain D, Structure Of The Chicken Mhc Class I Molecule Bf20401
Complexed To P5e
Length = 275
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 147 PEVFI---ENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVS 203
PEV + E + L+C P + W + A+ D+ GG I G+ T
Sbjct: 185 PEVRVWGKEADGILTLSCRAHGFYPRPIVVSWLKDGAVRGQDAHSGG---IVPNGDGTYH 241
Query: 204 YLLIQKARPSDNGKYQC 220
+ +A+P D KYQC
Sbjct: 242 TWVTIEAQPGDGDKYQC 258
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 11/77 (14%)
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
IE G T+ +TC +P P I+W N+ + + R + +L I+ +
Sbjct: 124 IEVGHTVLMTCKAIGNPTP--NIYWIKNQTKVDMSNPRYSLKD---------GFLQIENS 172
Query: 211 RPSDNGKYQCNPANSQA 227
R D GKY+C NS
Sbjct: 173 REEDQGKYECVAENSMG 189
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 20/155 (12%)
Query: 75 NDQRFRVINNPTSDDWTLQ---LKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDG 131
N QRF I S L+ L+ P +D +YEC + I + + V+ +
Sbjct: 48 NSQRFETIEFDESAGAVLRIQPLRTP--RDENVYEC---VAQNSVGEITVHAKLTVLRED 102
Query: 132 KYLLVPEPETDIIGGPEV-FIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGG 190
+ +P +I GP++ +E T + C +P+P I W + + + G
Sbjct: 103 Q---LPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDPSASNGR 157
Query: 191 VNVITEKGETTVSYLLIQKARPSDNGKYQCNPANS 225
+ + L I+ + +D GKY+C NS
Sbjct: 158 IKQLRS------GALQIESSEETDQGKYECVATNS 186
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 20/155 (12%)
Query: 75 NDQRFRVINNPTSDDWTLQ---LKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDG 131
N QRF I S L+ L+ P +D +YEC + I + + V+ +
Sbjct: 48 NSQRFETIEFDESAGAVLRIQPLRTP--RDENVYEC---VAQNSVGEITVHAKLTVLRED 102
Query: 132 KYLLVPEPETDIIGGPEV-FIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGG 190
+ +P +I GP++ +E T + C +P+P I W + + + G
Sbjct: 103 Q---LPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDPSASNGR 157
Query: 191 VNVITEKGETTVSYLLIQKARPSDNGKYQCNPANS 225
+ + L I+ + +D GKY+C NS
Sbjct: 158 IKQLRS------GALQIESSEETDQGKYECVATNS 186
>pdb|3EO9|H Chain H, Crystal Structure The Fab Fragment Of Efalizumab
Length = 219
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 18/117 (15%)
Query: 70 RYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVIN 129
RY RF + + + + LQ+ + +DT +Y C + Y Y T
Sbjct: 59 RYNQKFKDRFTISVDKSKNTLYLQMNSLRAEDTAVYYCA------RGIYFYGTTYFDYWG 112
Query: 130 DGKYLLVPEPETDIIGGPEVF-------IENGSTINLTCVVR-FSPEPPAYIFWNHN 178
G + V T GP VF +G T L C+V+ + PE P + WN
Sbjct: 113 QGTLVTVSSASTK---GPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PVTVSWNSG 165
>pdb|3EOA|H Chain H, Crystal Structure The Fab Fragment Of Efalizumab In
Complex With Lfa-1 I Domain, Form I
pdb|3EOA|B Chain B, Crystal Structure The Fab Fragment Of Efalizumab In
Complex With Lfa-1 I Domain, Form I
pdb|3EOB|H Chain H, Crystal Structure The Fab Fragment Of Efalizumab In
Complex With Lfa-1 I Domain, Form Ii
pdb|3EOB|B Chain B, Crystal Structure The Fab Fragment Of Efalizumab In
Complex With Lfa-1 I Domain, Form Ii
Length = 220
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 18/117 (15%)
Query: 70 RYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVIN 129
RY RF + + + + LQ+ + +DT +Y C + Y Y T
Sbjct: 59 RYNQKFKDRFTISVDKSKNTLYLQMNSLRAEDTAVYYCA------RGIYFYGTTYFDYWG 112
Query: 130 DGKYLLVPEPETDIIGGPEVF-------IENGSTINLTCVVR-FSPEPPAYIFWNHN 178
G + V T GP VF +G T L C+V+ + PE P + WN
Sbjct: 113 QGTLVTVSSASTK---GPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PVTVSWNSG 165
>pdb|1BZ7|B Chain B, Fab Fragment From Murine Ascites
Length = 217
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 17/117 (14%)
Query: 71 YTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVIND 130
Y T RF + + + LQ+ + +DT IY C T ++ Y +
Sbjct: 60 YADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAIYYCTRGGTGTRSLYYF-----DYWGQ 114
Query: 131 GKYLLVPEPETDIIGGPEVF-------IENGSTINLTCVVR-FSPEPPAYIFWNHNE 179
G L+V T GP VF +G T L C+V+ + PE P + WN
Sbjct: 115 GATLIVSSASTK---GPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PVTVSWNSGA 167
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 20/155 (12%)
Query: 75 NDQRFRVINNPTSDDWTLQ---LKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDG 131
N QRF I S L+ L+ P +D +YEC + I + + V+ +
Sbjct: 48 NSQRFETIEFDESAGAVLRIQPLRTP--RDENVYEC---VAQNSVGEITVHAKLTVLRED 102
Query: 132 KYLLVPEPETDIIGGPEV-FIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGG 190
+ +P +I GP++ +E T + C +P+P I W + + + G
Sbjct: 103 Q---LPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDPSASNGR 157
Query: 191 VNVITEKGETTVSYLLIQKARPSDNGKYQCNPANS 225
+ + L I+ + +D GKY+C NS
Sbjct: 158 IKQLRS------GALQIESSEETDQGKYECVATNS 186
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 13/106 (12%)
Query: 91 TLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDG-KYLLVPEPETDIIGGPEV 149
LQ++ + D G YEC + + + + V V N ++ ++P + GG
Sbjct: 165 ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGG--- 221
Query: 150 FIENGSTINLTCVVRFSPEPPAYIFWNHN-EAIISYDSQRGGVNVI 194
+N+TCV SP P Y+ W E + D G NV+
Sbjct: 222 ------NVNITCVAVGSPMP--YVKWMQGAEDLTPEDDMPVGRNVL 259
>pdb|1IND|H Chain H, How The Anti-(Metal Chelate) Antibody Cha255 Is Specific
For The Metal Ion Of Its Antigen: X-Ray Structures For
Two Fab'(Slash)hapten Complexes With Different Metals In
The Chelate
pdb|1INE|H Chain H, How The Anti-(Metal Chelate) Antibody Cha255 Is Specific
For The Metal Ion Of Its Antigen: X-Ray Structures For
Two Fab'(Slash)hapten Complexes With Different Metals In
The Chelate
Length = 226
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 71 YTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVIND 130
Y+ + RF + + ++ LQL + +DT +Y C H H +TV
Sbjct: 60 YSASVKGRFTISRDNAQNNLYLQLNSLRSEDTALYFCASHRFVHWGHGTLVTVSAKTTPP 119
Query: 131 GKYLLVPEPETDIIGGPEVFIENGSTINLTCVVR-FSPEPPAYIFWNHNE 179
Y L P + S + L C+V+ + PE P + WN
Sbjct: 120 SVYPLAPGSAA----------QTNSMVTLGCLVKGYFPE-PVTVTWNSGS 158
>pdb|1IGF|H Chain H, Crystal Structures Of An Antibody To A Peptide And Its
Complex With Peptide Antigen At 2.8 Angstroms
pdb|2IGF|H Chain H, Crystal Structures Of An Antibody To A Peptide And Its
Complex With Peptide Antigen At 2.8 Angstroms
pdb|1IGF|J Chain J, Crystal Structures Of An Antibody To A Peptide And Its
Complex With Peptide Antigen At 2.8 Angstroms
Length = 221
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 18/140 (12%)
Query: 52 ECQVSFVRHRDIHLL-------TTGRYTYTNDQ---RFRVINNPTSDDWTLQLKYPQHKD 101
C +S+VR L + G YT+ D RF + N + +LQ+ + +D
Sbjct: 31 RCAMSWVRQTPEKRLEWVAGISSGGSYTFYPDTVKGRFIISRNNARNTLSLQMSSLRSED 90
Query: 102 TGIYEC-QVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLT 160
T IY C + S+ P Y + L ++ K P + P + S + L
Sbjct: 91 TAIYYCTRYSSDPFYFDY-WGQGTTLTVSSAKT----TPPSVYPLAPGSAAQTNSMVTLG 145
Query: 161 CVVR-FSPEPPAYIFWNHNE 179
C+V+ + PE P + WN
Sbjct: 146 CLVKGYFPE-PVTVTWNSGS 164
>pdb|3NZH|H Chain H, Crystal Structure Of Anti-Emmprin Antibody 5f6 Fab
Length = 226
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 25/116 (21%)
Query: 71 YTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVIND 130
Y + RF + + + LQ+ + +DTGIY C TP + Y
Sbjct: 63 YAESVKGRFTISRDDSKSSVYLQMNNLRAEDTGIYYC----TPDGSDY---------WGQ 109
Query: 131 GKYLLVPEPETDIIGGPEVF-------IENGSTINLTCVVR-FSPEPPAYIFWNHN 178
G L V T GP VF +G T L C+V+ + PE P + WN
Sbjct: 110 GTTLTVSSASTK---GPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PVTVSWNSG 161
>pdb|1EJO|H Chain H, Fab Fragment Of Neutralising Monoclonal Antibody 4c4
Complexed With G-H Loop From Fmdv
Length = 220
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 12/117 (10%)
Query: 69 GRYTYTNDQ---RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVV 125
G YTY D RF + ++ LQ+ + +DT +Y C +
Sbjct: 55 GAYTYYPDSVKGRFTISDDNAESTLYLQMSSLRSEDTAMYYCVRRAFDSDVGFASWGHRT 114
Query: 126 LVINDGKYLLVPE--PETDIIGGPEVFIENGSTINLTCVVR-FSPEPPAYIFWNHNE 179
LV P P + GG GS++ L C+V+ + PE P + WN
Sbjct: 115 LVTVSAAKTTAPSVYPLAPVCGG-----TTGSSVTLGCLVKGYFPE-PVTLTWNSGS 165
>pdb|1TZI|B Chain B, Crystal Structure Of The Fab Yads2 Complexed With H-Vegf
Length = 222
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 19/110 (17%)
Query: 78 RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVP 137
RF + + + + LQ+ + +DT +Y C S+ + A Y G + V
Sbjct: 67 RFTISADTSKNTAYLQMNSLRAEDTAVYYCSRSSYAYYAAMDYW-------GQGTLVTVS 119
Query: 138 EPETDIIGGPEVF-------IENGSTINLTCVVR-FSPEPPAYIFWNHNE 179
T GP VF +G T L C+V+ + PE P + WN
Sbjct: 120 SASTK---GPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PVTVSWNSGA 165
>pdb|3INU|H Chain H, Crystal Structure Of An Unbound Kz52 Neutralizing
Anti-Ebolavirus Antibody.
pdb|3INU|M Chain M, Crystal Structure Of An Unbound Kz52 Neutralizing
Anti-Ebolavirus Antibody
Length = 226
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 14/109 (12%)
Query: 78 RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVP 137
RF + + + LQ+ + +DT +Y C V P Y + V + G + V
Sbjct: 67 RFTISRDNAENSLYLQMNSLRAEDTAVYYC-VREGPRATGY-SMADVFDIWGQGTMVTVS 124
Query: 138 EPETDIIGGPEVF-------IENGSTINLTCVVR-FSPEPPAYIFWNHN 178
T GP VF +G T L C+V+ + PE P + WN
Sbjct: 125 SASTK---GPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PVTVSWNSG 169
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
+ GS + L V P P + + E S D Q I+++G+ + LLI +A
Sbjct: 115 VRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQ------ISQEGD--LYSLLIAEA 166
Query: 211 RPSDNGKYQCNPANSQAKS 229
P D+G Y N NS ++
Sbjct: 167 YPEDSGTYSVNATNSVGRA 185
>pdb|3IDX|H Chain H, Crystal Structure Of Hiv-Gp120 Core In Complex With
Cd4-Binding Site Antibody B13, Space Group C222
pdb|3IDY|H Chain H, Crystal Structure Of Hiv-Gp120 Core In Complex With
Cd4-Binding Site Antibody B13, Space Group C2221
pdb|3IDY|B Chain B, Crystal Structure Of Hiv-Gp120 Core In Complex With
Cd4-Binding Site Antibody B13, Space Group C2221
Length = 231
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 16/122 (13%)
Query: 69 GRYTYTNDQ---RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVV 125
GR Y D RF + + + + L++ + +DT +Y C HY LT
Sbjct: 55 GRNKYYADSVKGRFSISRDNSKNTLYLEMNSLRAEDTAVYYCARDIGLKGEHYDILTAYG 114
Query: 126 L-VINDGKYLLVPEPETDIIGGPEVF-------IENGSTINLTCVVR-FSPEPPAYIFWN 176
G + V T GP VF +G T L C+V+ + PE P + WN
Sbjct: 115 PDYWGQGALVTVSSASTK---GPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PVTVSWN 170
Query: 177 HN 178
Sbjct: 171 SG 172
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
+ GS + L V P P + + E S D Q I+++G+ + LLI +A
Sbjct: 115 VRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQ------ISQEGD--LYSLLIAEA 166
Query: 211 RPSDNGKYQCNPANSQAKS 229
P D+G Y N NS ++
Sbjct: 167 YPEDSGTYSVNATNSVGRA 185
>pdb|3H0T|B Chain B, Hepcidin-Fab Complex
Length = 237
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 22/116 (18%)
Query: 73 YTNDQRFRVINNP--TSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVIND 130
Y + R+ NP + + ++LQL +DT +Y C A I + + V
Sbjct: 63 YAVSVQSRITINPDTSKNQFSLQLNSVTPEDTAVYYC--------ARGIVFSYAMDVWGQ 114
Query: 131 GKYLLVPEPETDIIGGPEVF-------IENGSTINLTCVVR-FSPEPPAYIFWNHN 178
G + V T GP VF +G T L C+V+ + PE P + WN
Sbjct: 115 GTTVTVSSASTK---GPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PVTVSWNSG 166
>pdb|1I85|A Chain A, Crystal Structure Of The Ctla-4B7-2 Complex
pdb|1I85|B Chain B, Crystal Structure Of The Ctla-4B7-2 Complex
pdb|1NCN|A Chain A, The Receptor-Binding Domain Of Human B7-2
pdb|1NCN|B Chain B, The Receptor-Binding Domain Of Human B7-2
Length = 110
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 33 SDDWTLQLKYPQHKDTGIYEC 53
SD WTL+L Q KD G+Y+C
Sbjct: 66 SDSWTLRLHNLQIKDKGLYQC 86
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 87 SDDWTLQLKYPQHKDTGIYEC 107
SD WTL+L Q KD G+Y+C
Sbjct: 66 SDSWTLRLHNLQIKDKGLYQC 86
>pdb|1Q1J|H Chain H, Crystal Structure Analysis Of Anti-Hiv-1 Fab 447-52d In
Complex With V3 Peptide
pdb|1Q1J|I Chain I, Crystal Structure Analysis Of Anti-Hiv-1 Fab 447-52d In
Complex With V3 Peptide
pdb|3C2A|H Chain H, Antibody Fab Fragment 447-52d In Complex With Ug1033
Peptide
pdb|3C2A|I Chain I, Antibody Fab Fragment 447-52d In Complex With Ug1033
Peptide
Length = 231
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 22/122 (18%)
Query: 71 YTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYEC------QVSTTPHQAHYIYLTVV 124
Y + RF + + + + LQ+ + +DT +Y C + +Y Y+
Sbjct: 62 YAASVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYSCTTDGFIMIRGVSEDYYYYYMD-- 119
Query: 125 VLVINDGKYLLVPEPETDIIGGPEVF-------IENGSTINLTCVVR-FSPEPPAYIFWN 176
V G + V T GP VF +G T L C+V+ + PE P + WN
Sbjct: 120 --VWGKGTTVTVSSASTK---GPSVFPLAPCSRSTSGGTAALGCLVKDYFPE-PVTVSWN 173
Query: 177 HN 178
Sbjct: 174 SG 175
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 47/133 (35%), Gaps = 20/133 (15%)
Query: 53 CQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWT--LQLKYPQHKDTGIYECQVS 110
C V DI + G DQ + ++ W L LK + D G Y CQV
Sbjct: 24 CSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSE---QHWIGFLSLKSVERSDAGRYWCQVE 80
Query: 111 TTPHQ--AHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPE 168
+ ++LTV +G EP+ ++ + + L+C PE
Sbjct: 81 DGGETEISQPVWLTV------EGVPFFTVEPK-------DLAVPPNAPFQLSCEAVGPPE 127
Query: 169 PPAYIFWNHNEAI 181
P ++W I
Sbjct: 128 PVTIVWWRGTTKI 140
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 33/156 (21%)
Query: 81 VINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPE 140
+ +N T+D ++LK +D G Y C + + + + L V E
Sbjct: 616 MFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVV----------RQLTVLERV 665
Query: 141 TDIIGGPEVFIEN-----GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVIT 195
I G +EN G +I ++C +P PP +++ NE ++ DS ++
Sbjct: 666 APTITGN---LENQTTSIGESIEVSCTASGNP-PPQIMWFKDNETLVE-DS-----GIVL 715
Query: 196 EKGETTVSYLLIQKARPSDNGKYQCNPANSQAKSVM 231
+ G L I++ R D G Y C QA SV+
Sbjct: 716 KDGNRN---LTIRRVRKEDEGLYTC-----QACSVL 743
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
G ++ L C + S PP +FW N ++ +++ R + + T LLI+
Sbjct: 30 GDSVKLEC--QISAIPPPKLFWKRNNEMVQFNTDR----ISLYQDNTGRVTLLIKDVNKK 83
Query: 214 DNGKYQCNPAN 224
D G Y + N
Sbjct: 84 DAGWYTVSAVN 94
>pdb|3GHB|H Chain H, Crystal Structure Of Anti-Hiv-1 Fab 447-52d In Complex
With V3 Peptide W2rw020
pdb|3GHB|I Chain I, Crystal Structure Of Anti-Hiv-1 Fab 447-52d In Complex
With V3 Peptide W2rw020
Length = 235
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 22/122 (18%)
Query: 71 YTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYEC------QVSTTPHQAHYIYLTVV 124
Y + RF + + + + LQ+ + +DT +Y C + +Y Y+
Sbjct: 62 YAASVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYSCTTDGFIMIRGVSEDYYYYYMD-- 119
Query: 125 VLVINDGKYLLVPEPETDIIGGPEVF-------IENGSTINLTCVVR-FSPEPPAYIFWN 176
V G + V T GP VF +G T L C+V+ + PE P + WN
Sbjct: 120 --VWGKGTTVTVSSASTK---GPSVFPLAPCSRSTSGGTAALGCLVKDYFPE-PVTVSWN 173
Query: 177 HN 178
Sbjct: 174 SG 175
>pdb|2W60|A Chain A, Anti Citrullinated Collagen Type 2 Antibody Acc4
Length = 218
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 68 TGRYTYTND--QRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVV 125
TG TYT+D RF ++ LQ+ +++DT Y C +TT + Y + +
Sbjct: 55 TGEPTYTDDFKGRFAFSLESSASTAFLQINNLKNEDTATYFCARATTATELAY-WGQGTL 113
Query: 126 LVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVR-FSPEPPAYIFWNHNE 179
+ ++ K P + P + S + L C+V+ + PE P + WN
Sbjct: 114 VTVSAAKT----TPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPE-PVTVTWNSGS 163
>pdb|2W65|A Chain A, Anti Citrullinated Collagen Type 2 Antibody Acc4 In
Complex With A Citrullinated Peptide
pdb|2W65|C Chain C, Anti Citrullinated Collagen Type 2 Antibody Acc4 In
Complex With A Citrullinated Peptide
Length = 218
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 68 TGRYTYTND--QRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVV 125
TG TYT+D RF ++ LQ+ +++DT Y C +TT + Y + +
Sbjct: 55 TGEPTYTDDFKGRFAFSLESSASTAFLQINNLKNEDTATYFCARATTATELAY-WGQGTL 113
Query: 126 LVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVR-FSPEPPAYIFWNHNE 179
+ ++ K P + P + S + L C+V+ + PE P + WN
Sbjct: 114 VTVSAAKT----TPPSVYPLAPGSAAQRNSMVTLGCLVKGYFPE-PVTVTWNSGS 163
>pdb|3FN0|H Chain H, Crystal Structure Of Hiv-1 Neutralizing Human Fab Z13e1 In
Complex With A 12-Residue Peptide Containing The Z13e1
Epitope On Gp41
Length = 231
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 19/123 (15%)
Query: 68 TGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYEC---QVSTTPHQAHYIYLTVV 124
T +Y + + R + + + + ++L+L DT IY C + + +Y Y+
Sbjct: 57 TTKYNPSLESRITISRDISKNQFSLRLNSVTAADTAIYYCARVAIGVSGFLNYYYYMD-- 114
Query: 125 VLVINDGKYLLVPEPETDIIGGPEVF-------IENGSTINLTCVVR-FSPEPPAYIFWN 176
V G + V T GP VF +G T L C+V+ + PE P + WN
Sbjct: 115 --VWGSGTAVTVSSASTK---GPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PVTVSWN 168
Query: 177 HNE 179
Sbjct: 169 SGA 171
>pdb|1IFH|H Chain H, A Detailed Analysis Of The Free And Bound Conformation Of
An Antibody: X-Ray Structures Of Anti-Peptide Fab
17(Slash)9 And Three Different Fab-Peptide Complexes
pdb|1HIL|B Chain B, Structural Evidence For Induced Fit As A Mechanism For
Antigen-Antibody Recognition
pdb|1HIL|D Chain D, Structural Evidence For Induced Fit As A Mechanism For
Antigen-Antibody Recognition
pdb|1HIM|L Chain L, Structural Evidence For Induced Fit As A Mechanism For
Antibody-Antigen Recognition
pdb|1HIM|M Chain M, Structural Evidence For Induced Fit As A Mechanism For
Antibody-Antigen Recognition
pdb|1HIN|H Chain H, Structural Evidence For Induced Fit As A Mechanism For
Antibody-Antigen Recognition
Length = 220
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 12/117 (10%)
Query: 69 GRYTYTNDQ---RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVV 125
G YTY D RF + + + LQ+ + +D+ +Y C + + Y
Sbjct: 55 GGYTYYPDSVKGRFTISRDNAKNTLYLQMSSLKSEDSAMYYCARRERYDENGFAYWGQGT 114
Query: 126 LVINDGKYLLVPE--PETDIIGGPEVFIENGSTINLTCVVR-FSPEPPAYIFWNHNE 179
LV P P + G GS++ L C+V+ + PE P + WN
Sbjct: 115 LVTVSAAKTTAPSVYPLAPVCGD-----TTGSSVTLGCLVKGYFPE-PVTLTWNSGS 165
>pdb|4DW2|H Chain H, The Crystal Structure Of Upa In Complex With The Fab
Fragment Of Mab- 112
Length = 212
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 18/126 (14%)
Query: 59 RHRDIHLLTTGRYTYTNDQ---RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQ 115
R + +T G TY +D RF + + + +LQ+ + +DT +Y C+ +
Sbjct: 44 RLEWVASITNGGSTYYSDSVKGRFIISRDNARNILSLQMSSLRSEDTAMYYCERGELTYA 103
Query: 116 AHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVF-IENGSTINLTCVVR-FSPEPPAYI 173
Y G + V +T P V+ + GS + L C+V+ + PE P +
Sbjct: 104 MDYW---------GQGTTVTVSSAKTTP---PSVYPLAPGSMVTLGCLVKGYFPE-PVTV 150
Query: 174 FWNHNE 179
WN
Sbjct: 151 TWNSGS 156
>pdb|3Q1S|H Chain H, Hiv-1 Neutralizing Antibody Z13e1 In Complex With Epitope
Display Protein
Length = 230
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 19/123 (15%)
Query: 68 TGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYEC---QVSTTPHQAHYIYLTVV 124
T +Y + + R + + + + ++L+L DT IY C + + +Y Y+
Sbjct: 56 TTKYNPSLESRITISRDISKNQFSLRLNSVTAADTAIYYCARVAIGVSGFLNYYYYMD-- 113
Query: 125 VLVINDGKYLLVPEPETDIIGGPEVF-------IENGSTINLTCVVR-FSPEPPAYIFWN 176
V G + V T GP VF +G T L C+V+ + PE P + WN
Sbjct: 114 --VWGSGTAVTVSSASTK---GPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PVTVSWN 167
Query: 177 HNE 179
Sbjct: 168 SGA 170
>pdb|2YWZ|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 111
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 8/115 (6%)
Query: 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRV 81
DQ R I T + T++ H C +S L +T T + R+
Sbjct: 4 DQTPRTITKETGESLTIKCVLKDH------SCGLSSTTWYRTQLGSTNEKTISIGGRYDE 57
Query: 82 INNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLV 136
+ S ++L++ + +D+G Y+CQ +P + Y Y ++ V G L V
Sbjct: 58 TVDKGSKSFSLRISDLRVEDSGTYKCQADYSP--SCYSYPSLESAVEGAGTVLTV 110
>pdb|3KDM|H Chain H, Crystal Structure Of Human Anti-Steroid Fab 5f2 In Complex
With Testosterone
pdb|3KDM|B Chain B, Crystal Structure Of Human Anti-Steroid Fab 5f2 In Complex
With Testosterone
Length = 225
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 20/123 (16%)
Query: 68 TGRYTYTNDQ---RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVV 124
+G TY D RF + + + + LQ+ + +DT +Y C + P Y Y
Sbjct: 54 SGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC--ARDPGLWDYYY---G 108
Query: 125 VLVINDGKYLLVPEPETDIIGGPEVF-------IENGSTINLTCVVR-FSPEPPAYIFWN 176
+ V G + V T GP VF +G T L C+V+ + PE P + WN
Sbjct: 109 MDVWGQGTLVTVSSASTK---GPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PVTVSWN 164
Query: 177 HNE 179
Sbjct: 165 SGA 167
>pdb|3GJE|H Chain H, Rational Development Of High-Affinity T-Cell Receptor-Like
Antibodies
pdb|3GJE|B Chain B, Rational Development Of High-Affinity T-Cell Receptor-Like
Antibodies
pdb|3GJF|H Chain H, Rational Development Of High-Affinity T-Cell Receptor-Like
Antibodies
pdb|3GJF|M Chain M, Rational Development Of High-Affinity T-Cell Receptor-Like
Antibodies
Length = 220
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 30/143 (20%)
Query: 54 QVSFVRHRD-------IHLLTTGRYTYTNDQ---RFRVINNPTSDDWTLQLKYPQHKDTG 103
Q+S+VR ++++G T D RF + + + + LQ+ + +DT
Sbjct: 33 QMSWVRQAPGKGLEWVSGIVSSGGSTAYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTA 92
Query: 104 IYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVF-------IENGST 156
+Y C P+ ++ G + V T GP VF +G T
Sbjct: 93 VYYCAGELLPYYGMDVW--------GQGTTVTVSSASTK---GPSVFPLAPSSKSTSGGT 141
Query: 157 INLTCVVR-FSPEPPAYIFWNHN 178
L C+V+ + PE P + WN
Sbjct: 142 AALGCLVKDYFPE-PVTVSWNSG 163
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 31/153 (20%)
Query: 78 RFRVINNPTSDDWT-----LQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGK 132
++R ++ S WT LQ+ +D G YEC+ + + TV G+
Sbjct: 239 KWRKVDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRD-----TV------QGR 287
Query: 133 YLLVPEPE-TDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGV 191
++ +PE +I E I GS + C P P + W N ++ ++ V
Sbjct: 288 IIVQAQPEWLKVISDTEADI--GSNLRWGCAAAGKPRP--TVRWLRNGEPLASQNR---V 340
Query: 192 NVITEKGETTVSYLLIQKARPSDNGKYQCNPAN 224
V+ G+ S L ++ D+G YQC N
Sbjct: 341 EVLA--GDLRFSKLSLE-----DSGMYQCVAEN 366
>pdb|1QKZ|H Chain H, Fab Fragment (Mn14c11.6) In Complex With A Peptide Antigen
Derived From Neisseria Meningitidis P1.7 Serosubtype
Antigen And Domain Ii From Streptococcal Protein G
Length = 219
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 13/117 (11%)
Query: 69 GRYTYTNDQ---RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVV 125
G YTY D RF + + ++ LQ+ + +DTG+Y C + +
Sbjct: 55 GAYTYYPDSVKGRFTISRDNAKNNLYLQMNSLKSEDTGMYYCARDPLEYYGMDYWGQGTS 114
Query: 126 LVINDGKYLLVPE--PETDIIGGPEVFIENGSTINLTCVVR-FSPEPPAYIFWNHNE 179
+ ++ K P P + G GS++ L C+V+ + PE P + WN
Sbjct: 115 VAVSSAK-TTAPSVYPLAPVCGD-----TTGSSVTLGCLVKGYFPE-PVTVTWNSGS 164
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 153 NGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARP 212
G L C VR +P P I W N I Y E V+ L IQ A P
Sbjct: 25 EGQDFVLQCSVRGTPVP--RITWLLNGQPIQY---------ARSTCEAGVAELHIQDALP 73
Query: 213 SDNGKYQCNPANS 225
D+G Y C N+
Sbjct: 74 EDHGTYTCLAENA 86
>pdb|3HAE|H Chain H, Rational Development Of High-Affinity T-Cell Receptor-Like
Antibodies
pdb|3HAE|I Chain I, Rational Development Of High-Affinity T-Cell Receptor-Like
Antibodies
pdb|3HAE|O Chain O, Rational Development Of High-Affinity T-Cell Receptor-Like
Antibodies
pdb|3HAE|T Chain T, Rational Development Of High-Affinity T-Cell Receptor-Like
Antibodies
Length = 220
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 20/109 (18%)
Query: 78 RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVP 137
RF + + + + LQ+ + +DT +Y C P+ ++ G + V
Sbjct: 67 RFTISRDNSKNTLYLQMNSLRAEDTAVYYCAGELLPYYGMDVW--------GQGTTVTVS 118
Query: 138 EPETDIIGGPEVF-------IENGSTINLTCVVR-FSPEPPAYIFWNHN 178
T GP VF +G T L C+V+ + PE P + WN
Sbjct: 119 SASTK---GPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PVTVSWNSG 163
>pdb|3PL6|C Chain C, Structure Of Autoimmune Tcr Hy.1b11 In Complex With
Hla-Dq1 And Mbp 85-99
Length = 206
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Query: 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRV 81
DQR V N T+ ++L + Q +D+ +Y C S + + T R T +
Sbjct: 58 DQRIAVTLNKTAKHFSLHITETQPEDSAVYFCAASSFGNEKLTFGTGTRLTIIPN----- 112
Query: 82 INNPTSDDWTLQLKYPQHKDTGI-----YECQVSTTPHQAHYIYLT 122
I NP D QL+ + D + ++ Q + + + +Y+T
Sbjct: 113 IQNP--DPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYIT 156
>pdb|1W72|H Chain H, Crystal Structure Of Hla-A1:mage-A1 In Complex With Fab-
Hyb3
pdb|1W72|I Chain I, Crystal Structure Of Hla-A1:mage-A1 In Complex With Fab-
Hyb3
Length = 223
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 17/109 (15%)
Query: 78 RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVP 137
RF + + + LQ+ + +DT +Y C HY Y + + G + V
Sbjct: 67 RFTISRDNAKNSLYLQMNSLRAEDTAVYYCARG---RGFHYYYYGMDIW--GQGTTVTVS 121
Query: 138 EPETDIIGGPEVF-------IENGSTINLTCVVR-FSPEPPAYIFWNHN 178
T GP VF +G T L C+V+ + PE P + WN
Sbjct: 122 SASTK---GPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PVTVSWNSG 166
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 12/129 (9%)
Query: 92 LQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFI 151
L+++ + +D G+Y+C V A + G++ +P E +
Sbjct: 391 LRIESVKKEDKGMYQCFVRNDRESAE-----ASAELKLGGRF----DPPVIRQAFQEETM 441
Query: 152 ENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKAR 211
E G ++ L CV +P P I W + I+ + + +T G+ VSYL I
Sbjct: 442 EPGPSVFLKCVAGGNPTPE--ISWELDGKKIANNDRYQVGQYVTVNGDV-VSYLNITSVH 498
Query: 212 PSDNGKYQC 220
+D G Y+C
Sbjct: 499 ANDGGLYKC 507
>pdb|1R24|B Chain B, Fab From Murine Igg3 Kappa
pdb|1R24|D Chain D, Fab From Murine Igg3 Kappa
Length = 217
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 68/170 (40%), Gaps = 19/170 (11%)
Query: 71 YTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVIND 130
Y T RF + + + LQ+ + +DT IY C T ++ Y +
Sbjct: 60 YADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAIYYCTRGGTGTRSLYYF-----DYWGQ 114
Query: 131 GKYLLVPEPETDIIGGPEVFI-------ENGSTINLTCVVRFSPEPPAYIFWNHNEAIIS 183
G L+V T P V+ +GS++ L C+V+ P + WN+ +
Sbjct: 115 GATLIVSSATTT---APSVYPLVPGCSDTSGSSVTLGCLVKGYFPGPVTVKWNYG----A 167
Query: 184 YDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAKSVMVN 233
S V+ + + G ++S L+ + + CN A+ +K+ ++
Sbjct: 168 LSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVICNVAHPASKTDLIK 217
>pdb|2NZ9|D Chain D, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
pdb|2NZ9|F Chain F, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
Length = 224
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 24/121 (19%)
Query: 69 GRYTYTNDQ---RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVV 125
G YTY +D RF + + + LQ+ + +DT IY C + Y Y +
Sbjct: 55 GSYTYYSDSVEGRFTTSRDNSKNTLYLQMNSLRAEDTAIYYC--------SRYRYDDAMD 106
Query: 126 LVINDGKYLLVPEPETDIIGGPEVF-------IENGSTINLTCVVR-FSPEPPAYIFWNH 177
G + V T GP VF +G T L C+V+ + PE P + WN
Sbjct: 107 Y-WGQGTLVTVSSASTK---GPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PVTVSWNS 161
Query: 178 N 178
Sbjct: 162 G 162
>pdb|3HI5|H Chain H, Crystal Structure Of Fab Fragment Of Al-57
pdb|3HI6|H Chain H, Crystal Structure Of Intermediate Affinity I Domain Of
Integrin Lfa-1 With The Fab Fragment Of Its Antibody
Al-57
pdb|3HI6|X Chain X, Crystal Structure Of Intermediate Affinity I Domain Of
Integrin Lfa-1 With The Fab Fragment Of Its Antibody
Al-57
Length = 220
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 22/126 (17%)
Query: 64 HLLTTGRYTYTNDQ---RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIY 120
++ +G TY D RF + + + + LQ+ + +DT +Y C S Y +
Sbjct: 50 YIWPSGGNTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCASS-------YDF 102
Query: 121 LTVVVLVINDGKYLLVPEPETDIIGGPEVF-------IENGSTINLTCVVR-FSPEPPAY 172
+ + G + V T GP VF + ST L C+V+ + PE P
Sbjct: 103 WSNAFDIWGQGTMVTVSSASTK---GPSVFPLAPCSRSTSESTAALGCLVKDYFPE-PVT 158
Query: 173 IFWNHN 178
+ WN
Sbjct: 159 VSWNSG 164
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 19/82 (23%)
Query: 139 PETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKG 198
P+T II P+ +G+ +NL+C +P P Y + G+ +
Sbjct: 559 PDTPIISPPDSSYLSGANLNLSCHSASNPSP-------------QYSWRINGI----PQQ 601
Query: 199 ETTVSYLLIQKARPSDNGKYQC 220
T V L I K P++NG Y C
Sbjct: 602 HTQV--LFIAKITPNNNGTYAC 621
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 69 GRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHY 118
G T D R + + N LQ++Y + DTG Y C ST +A +
Sbjct: 46 GVLVSTQDSRIKQLEN-----GVLQIRYAKLGDTGRYTCIASTPSGEATW 90
>pdb|2NYY|D Chain D, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Cr1
Length = 223
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 24/121 (19%)
Query: 69 GRYTYTNDQ---RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVV 125
G YTY +D RF + + + LQ+ + +DT IY C + Y Y +
Sbjct: 55 GSYTYYSDSVEGRFTTSRDNSKNTLYLQMNSLRAEDTAIYYC--------SRYRYDDAMD 106
Query: 126 LVINDGKYLLVPEPETDIIGGPEVF-------IENGSTINLTCVVR-FSPEPPAYIFWNH 177
G + V T GP VF +G T L C+V+ + PE P + WN
Sbjct: 107 Y-WGQGTLVTVSSASTK---GPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PVTVSWNS 161
Query: 178 N 178
Sbjct: 162 G 162
>pdb|1LO4|H Chain H, Retro-Diels-Alderase Catalytic Antibody 9d9
Length = 220
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 9/126 (7%)
Query: 58 VRHRDIHLLTTGRYTYTNDQ---RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPH 114
+R + ++ G Y +D RF + + + TLQ+ + +DT IY C T+
Sbjct: 43 MRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSEDTAIYYCARGTSFV 102
Query: 115 QAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVR-FSPEPPAYI 173
+ ++ + ++ K P + P GS++ L C+V+ + PE P +
Sbjct: 103 RYFDVWGAGTTVTVSSAK---TTAPSVYPL-APVCGDTTGSSVTLGCLVKGYFPE-PVTL 157
Query: 174 FWNHNE 179
WN
Sbjct: 158 TWNSGS 163
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 4 VRHRDIHLLTTGRYTYTNDQ---RFRVINNPTSDDWTLQLKYPQHKDTGIYECQ--VSFV 58
+R + ++ G Y +D RF + + + TLQ+ + +DT IY C SFV
Sbjct: 43 MRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSEDTAIYYCARGTSFV 102
Query: 59 RHRDI 63
R+ D+
Sbjct: 103 RYFDV 107
>pdb|3IJH|B Chain B, Structure Of S67-27 In Complex With Ko
pdb|3IJH|D Chain D, Structure Of S67-27 In Complex With Ko
pdb|3IJS|B Chain B, Structure Of S67-27 In Complex With Tsbp
pdb|3IJS|D Chain D, Structure Of S67-27 In Complex With Tsbp
pdb|3IJY|B Chain B, Structure Of S67-27 In Complex With Kdo(2.8)kdo
pdb|3IJY|D Chain D, Structure Of S67-27 In Complex With Kdo(2.8)kdo
pdb|3IKC|B Chain B, Structure Of S67-27 In Complex With
Kdo(2.8)-7-O-Methyl-Kdo
pdb|3IKC|D Chain D, Structure Of S67-27 In Complex With
Kdo(2.8)-7-O-Methyl-Kdo
Length = 226
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 75/184 (40%), Gaps = 15/184 (8%)
Query: 55 VSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPH 114
+ F+R++ T Y+ + RF + + + LQ+ + +D+ Y C +P
Sbjct: 48 LGFIRNKAKGYTT--EYSASVKGRFTISRDNSQSILYLQMNTLRAEDSATYYCARDISPS 105
Query: 115 QAHY----IYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVR-FSPEP 169
Y Y LV P + G + +GS++ L C+V+ + PE
Sbjct: 106 YGVYYEGFAYWGQGTLVTVSAATTTAPSVYPLVPGCSDT---SGSSVTLGCLVKGYFPE- 161
Query: 170 PAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAKS 229
P + WN+ + S V+ + + G ++S L+ + + CN A+ +K+
Sbjct: 162 PVTVKWNYG----ALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVICNVAHPASKT 217
Query: 230 VMVN 233
++
Sbjct: 218 ELIK 221
>pdb|1UZ8|B Chain B, Anti-Lewis X Fab Fragment In Complex With Lewis X
pdb|1UZ8|H Chain H, Anti-Lewis X Fab Fragment In Complex With Lewis X
Length = 212
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 21/166 (12%)
Query: 71 YTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVIND 130
YT + +F + + + LQ+ + +DT +Y C T ++
Sbjct: 60 YTPSLKDKFIISRDNAKNTLYLQMSKVRSEDTALYYCARETGTRFDYW----------GQ 109
Query: 131 GKYLLVPEPETDIIGGPEVF--IENGSTINLTCVVR-FSPEPPAYIFWNHNEAIISYDSQ 187
G L V T P V+ + GS++ L C+V+ + PE P + WN+ + S
Sbjct: 110 GTTLTVSSATTT---APSVYPLVPGGSSVTLGCLVKGYFPE-PVTVKWNYG----ALSSG 161
Query: 188 RGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAKSVMVN 233
V+ + + G ++S L+ + + CN A+ +K+ ++
Sbjct: 162 VRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVICNVAHPASKTELIK 207
>pdb|3FFD|A Chain A, Structure Of Parathyroid Hormone-Related Protein Complexed
To A Neutralizing Monoclonal Antibody
Length = 218
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Query: 69 GRYTYTNDQ---RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVV 125
G YTY D RF + + + LQ+ + +DT ++ C TT ++ Y
Sbjct: 55 GSYTYYPDSVKGRFTISRDNAKNTLYLQMSSLKSEDTAMFYCARQTT--MTYFAYWGQGT 112
Query: 126 LV-INDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVR-FSPEPPAYIFWNHNE 179
LV ++ K P + P + S + L C+V+ + PE P + WN
Sbjct: 113 LVTVSAAKT----TPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPE-PVTVTWNSGS 163
>pdb|1B2W|H Chain H, Comparison Of The Three-Dimensional Structures Of A
Humanized And A Chimeric Fab Of An Anti-Gamma-Interferon
Antibody
Length = 220
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 22/109 (20%)
Query: 78 RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVP 137
RF + + + + LQ+ + +DT +Y C P A + T+V + K
Sbjct: 67 RFTISRDKSKNTLYLQMNSLRPEDTAVYYCARGFLPWFADWGQGTLVTVSSASTK----- 121
Query: 138 EPETDIIGGPEVF-------IENGSTINLTCVVR-FSPEPPAYIFWNHN 178
GP VF +G T L C+V+ + PE P + WN
Sbjct: 122 --------GPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PVTVSWNSG 161
>pdb|2O1B|A Chain A, Structure Of Aminotransferase From Staphylococcus Aureus
Length = 404
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 121 LTVVVLVINDGKYLLVPEPE-TDIIGGPEVFIENGSTINLTCVVRFSPEPPAYI 173
+ V VIN G Y+L+P+P TD + G V + +G + L EPP Y+
Sbjct: 123 VAVPTCVINPGDYVLLPDPGYTDYLAG--VLLADGKPVPLNL------EPPHYL 168
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 140 ETDIIGGP-EVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKG 198
E+ +G P + G T L C ++ EPP + + + DS + V + ++
Sbjct: 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61
Query: 199 E--TTVSYLLIQKARPSDNGKYQC 220
+ VS L I + SD G+YQC
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQYQC 85
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 149 VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQ 208
V + +G+ L CVV EPP + W ++ S+R ++ + LL+
Sbjct: 24 VRVVSGAEAELKCVVLG--EPPPVVVWEKGGQQLAA-SER-----LSFPADGAEHGLLLT 75
Query: 209 KARPSDNGKYQCNPAN 224
A P+D G Y C N
Sbjct: 76 AALPTDAGVYVCRARN 91
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 149 VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQ 208
V + +G+ L CVV EPP + W ++ S+R ++ + LL+
Sbjct: 24 VRVVSGAEAELKCVVLG--EPPPVVVWEKGGQQLAA-SER-----LSFPADGAEHGLLLT 75
Query: 209 KARPSDNGKYQCNPAN 224
A P+D G Y C N
Sbjct: 76 AALPTDAGVYVCRARN 91
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 149 VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQ 208
V + +G+ L CVV EPP + W ++ S+R ++ + LL+
Sbjct: 23 VRVVSGAEAELKCVVLG--EPPPVVVWEKGGQQLAA-SER-----LSFPADGAEHGLLLT 74
Query: 209 KARPSDNGKYQCNPAN 224
A P+D G Y C N
Sbjct: 75 AALPTDAGVYVCRARN 90
>pdb|3MJ7|B Chain B, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
Length = 225
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 63 IHLLTTGRYTYTN---DQRFRV---INNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA 116
+ +L +G Y N D + RV N+ S D ++ + Q D G Y+C+V P A
Sbjct: 53 VIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVA 112
Query: 117 HYIYLTVVVL 126
+ +L V++
Sbjct: 113 NKKFLLTVLV 122
>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
Receptor Junctional Adhesion Molecule-Like Protein, Jaml
pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
Length = 268
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 71/173 (41%), Gaps = 38/173 (21%)
Query: 68 TGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLV 127
TGR+ R ++ + +D +L L+ Q D GIY C++ +++ + V + V
Sbjct: 66 TGRF----QNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIR-LKNESMVMKKPVELWV 120
Query: 128 INDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPA----YIFWN----HNE 179
+ PE D+ + G T + C ++ + E ++F + E
Sbjct: 121 L--------PEEPRDL------RVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEE 166
Query: 180 AIISYDS-QRGGV--------NVITEKGETTV--SYLLIQKARPSDNGKYQCN 221
++SYDS R G N + G+ + + +Q + SD G Y C+
Sbjct: 167 TVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCS 219
>pdb|3JZ7|A Chain A, Crystal Structure Of The Extracellular Domains Of
Coxsackie & Adenovirus Receptor From Mouse (Mcar)
Length = 214
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 63 IHLLTTGRYTYTN---DQRFRV---INNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA 116
+ +L +G Y N D + RV N+ S D ++ + Q D G Y+C+V P A
Sbjct: 51 VIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVA 110
Query: 117 HYIYLTVVVL 126
+ +L V++
Sbjct: 111 NKKFLLTVLV 120
>pdb|2I26|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I26|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I26|P Chain P, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I27|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain
pdb|2I27|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain
Length = 121
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 152 ENGSTINLTCVVRFSPEPPAYIFW------NHNEAIISYDSQRGGVNVITEKGETTVSYL 205
E G ++ + CV+R S + +W + NE IS +GG V T + L
Sbjct: 13 ETGESLTINCVLRDSNCALSSTYWYRKKSGSTNEESIS----KGGRYVETVNSGSKSFSL 68
Query: 206 LIQKARPSDNGKYQCNP 222
I D+G Y+C P
Sbjct: 69 RINDLTVEDSGTYRCKP 85
>pdb|4HWU|A Chain A, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
pdb|4HWU|B Chain B, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
Length = 95
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 20/93 (21%)
Query: 147 PEVFI-ENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVS-Y 204
PE ++ G ++ L C+++ + A+IS+ + GV++ + Y
Sbjct: 8 PEAYVVAPGESLELQCMLK-------------DAAVISW--TKDGVHLGPNNRTVLIGEY 52
Query: 205 LLIQKARPSDNGKYQCNPA---NSQAKSVMVNV 234
L I+ A P D+G Y C A +S+ MVNV
Sbjct: 53 LQIKGATPRDSGLYACTAARTVDSETWIFMVNV 85
>pdb|3ULS|H Chain H, Crystal Structure Of Fab12
pdb|3ULS|B Chain B, Crystal Structure Of Fab12
pdb|3ULU|D Chain D, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|D Chain D, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 226
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 22/117 (18%)
Query: 73 YTNDQRFRVINNP--TSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVIND 130
Y + R+ NP + + ++LQL +DT +Y C A Y Y +
Sbjct: 63 YAVSVKSRITINPDTSKNQFSLQLNSVTPEDTAVYYC--------ARYSYPFYSIDYWGQ 114
Query: 131 GKYLLVPEPETDIIGGPEVF-------IENGSTINLTCVVR-FSPEPPAYIFWNHNE 179
G + V T GP VF + ST L C+V+ + PE P + WN
Sbjct: 115 GTLVTVSSASTK---GPSVFPLAPCSRSTSESTAALGCLVKDYFPE-PVTVSWNSGA 167
>pdb|2QHR|H Chain H, Crystal Structure Of The 13f6-1-2 Fab Fragment Bound To
Its Ebola Virus Glycoprotein Peptide Epitope
Length = 222
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 13/119 (10%)
Query: 69 GRYTYTNDQ---RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVV 125
G YTY D RF + + + LQ+ + +DT +Y C +HY +
Sbjct: 55 GGYTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSEDTAMYYCSRHIYYGSSHYYAMD--- 111
Query: 126 LVINDGKYLLVPEPETDIIG----GPEVFIENGSTINLTCVVR-FSPEPPAYIFWNHNE 179
G + V +T P GS++ L C+V+ + PE P + WN
Sbjct: 112 -YWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPE-PVTLTWNSGS 168
>pdb|3GHE|H Chain H, Crystal Structure Of Anti-Hiv-1 Fab 537-10d In Complex
With V3 Peptide Mn
Length = 233
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 78 RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHY--IYLTVVVLVINDGKYLL 135
RF + + + LQ+ + +DT +Y C + + H Y + V G +
Sbjct: 67 RFTISRDNAKNSLFLQMNSLRAEDTAVYFCAREFSSYTDHLEYYYDYYYMDVWGKGTTVT 126
Query: 136 VPEPETDIIGGPEVF-------IENGSTINLTCVVR-FSPEPPAYIFWNHN 178
V T GP VF +G T L C+V+ + PE P + WN
Sbjct: 127 VSSASTK---GPSVFPLAPCSRSTSGGTAALGCLVKDYFPE-PVTVSWNSG 173
>pdb|1HH1|A Chain A, The Structure Of Hjc, A Holliday Junction Resolving Enzyme
From Sulfolobus Solfataricus
Length = 143
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 138 EPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEK 197
+P DII ++NG I + R E Y+ E II + + GG + K
Sbjct: 38 DPIPDIIA-----LKNGVIILIEMKSRKDIEGKIYVRREQAEGIIEFARKSGGSLFLGVK 92
Query: 198 GETTVSYLLIQKARPSDNGKYQCN 221
+ ++ +K R ++ G Y +
Sbjct: 93 KPGVLKFIPFEKLRRTETGNYVAD 116
>pdb|1UWX|H Chain H, P1.2 Serosubtype Antigen Derived From N. Meningitidis Pora
In Complex With Fab Fragment
pdb|1UWX|M Chain M, P1.2 Serosubtype Antigen Derived From N. Meningitidis Pora
In Complex With Fab Fragment
Length = 225
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 12/119 (10%)
Query: 68 TGRYTYTND--QRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVV 125
TG TY +D RF ++ LQ+ +++DT Y C + + Y Y
Sbjct: 55 TGESTYADDFKGRFAFSLETSASTAYLQINNVKNEDTATYFCARGFYYYGSRYFYFDY-- 112
Query: 126 LVINDGKYLLVPEPETDIIG----GPEVFIENGSTINLTCVVR-FSPEPPAYIFWNHNE 179
G L V +T P GS++ L C+V+ + PE P + WN
Sbjct: 113 --WGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPE-PVTLTWNSGS 168
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 148 EVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNV---ITEKGETTVSY 204
E ENG + L C P P I W A+ + G ++ I KG+ S
Sbjct: 10 ETTYENGQ-VTLVCDAEGEPIPE--ITWK--RAVDGFTFTEGDKSLDGRIEVKGQHGSSS 64
Query: 205 LLIQKARPSDNGKYQCNPAN 224
L I+ + SD+G+Y C A+
Sbjct: 65 LHIKDVKLSDSGRYDCEAAS 84
>pdb|2IJ0|E Chain E, Structural Basis Of T Cell Specificity And Activation By
The Bacterial Superantigen Toxic Shock Syndrome Toxin-1
pdb|2IJ0|C Chain C, Structural Basis Of T Cell Specificity And Activation By
The Bacterial Superantigen Toxic Shock Syndrome Toxin-1
Length = 118
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 16/95 (16%)
Query: 149 VFIENGSTINLTCVVRFSPEPPAYIFWNH---NEAIISYDSQRGGVNVITEKG------- 198
V +++G+++ + C R +FW ++++ + G N I E+G
Sbjct: 11 VIVKSGTSVKIEC--RSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFL 68
Query: 199 ----ETTVSYLLIQKARPSDNGKYQCNPANSQAKS 229
T+S L + A P D+G Y C+ S
Sbjct: 69 INHASPTLSTLTVTSAHPEDSGFYVCSALAGSGSS 103
>pdb|3UJJ|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 4025 In Complex
With Con A Peptide
Length = 213
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEA------IISYDSQR--GGVNVITEKG 198
P V + G T +TC PE Y +W ++ II DS+R G +
Sbjct: 8 PSVSVSPGQTARITCSGDALPE--KYAYWYQQKSGQAPVLIIYEDSKRPSGIPERFSGSR 65
Query: 199 ETTVSYLLIQKARPSDNGKYQCNPANS 225
T++ L I A+ D Y C NS
Sbjct: 66 SGTMATLTISGAQVDDEADYYCYSTNS 92
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 148 EVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNV---ITEKGETTVSY 204
E ENG + L C P P I W A+ + G ++ I KG+ S
Sbjct: 10 ETTYENGQ-VTLVCDAEGEPIPE--ITWKR--AVDGFTFTEGDKSLDGRIEVKGQHGSSS 64
Query: 205 LLIQKARPSDNGKYQCNPAN 224
L I+ + SD+G+Y C A+
Sbjct: 65 LHIKDVKLSDSGRYDCEAAS 84
>pdb|4G6A|C Chain C, Structure Of The Hepatitis C Virus Envelope Glycoprotein
E2 Antigenic Region 412-423 Bound To The Broadly
Neutralizing Antibody Ap33
pdb|4G6A|H Chain H, Structure Of The Hepatitis C Virus Envelope Glycoprotein
E2 Antigenic Region 412-423 Bound To The Broadly
Neutralizing Antibody Ap33
Length = 224
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 20/111 (18%)
Query: 77 QRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLV 136
R + + + + + LQL +DT Y C + TT A + G + V
Sbjct: 66 SRISITRDTSKNQYYLQLNSVTTEDTATYYCALITTTTYAMDYW--------GQGTTVTV 117
Query: 137 PEPETDIIGGPEVF-------IENGSTINLTCVVR-FSPEPPAYIFWNHNE 179
T GP VF +G T L C+V+ + PE P + WN
Sbjct: 118 SSASTK---GPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PVTVSWNSGA 164
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 48 TGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDW 90
TG+ FV D TT ++ +RF++INN D W
Sbjct: 21 TGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWW 63
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 148 EVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNV---ITEKGETTVSY 204
E ENG + L C P P I W A+ + G ++ I KG+ S
Sbjct: 104 ETTYENGQ-VTLVCDAEGEPIPE--ITWKR--AVDGFTFTEGDKSLDGRIEVKGQHGSSS 158
Query: 205 LLIQKARPSDNGKYQCNPAN 224
L I+ + SD+G+Y C A+
Sbjct: 159 LHIKDVKLSDSGRYDCEAAS 178
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 19/98 (19%)
Query: 137 PEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITE 196
P P + E+ +E G T++LTC+ P ++ W E
Sbjct: 10 PSPPSIHPAQSELIVEAGDTLSLTCI------DPDFVRWTFK-------------TYFNE 50
Query: 197 KGETTVSYLLIQKARPSDNGKYQCNPANSQAKSVMVNV 234
E + + +KA + G Y C+ +N S+ V V
Sbjct: 51 MVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFV 88
>pdb|1NPU|A Chain A, Crystal Structure Of The Extracellular Domain Of Murine
Pd-1
pdb|3BP5|A Chain A, Crystal Structure Of The Mouse Pd-1 And Pd-L2 Complex
Length = 117
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 12 LTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYEC 53
+ G D RF++I P D+ + + + D+GIY C
Sbjct: 49 FSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLC 90
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 66 LTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYEC 107
+ G D RF++I P D+ + + + D+GIY C
Sbjct: 49 FSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLC 90
>pdb|3BP6|A Chain A, Crystal Structure Of The Mouse Pd-1 Mutant And Pd-L2
Complex
pdb|3RNK|A Chain A, Crystal Structure Of The Complex Between Mouse Pd-1
Mutant And Pd-L2 Igv Domain
pdb|3SBW|A Chain A, Crystal Structure Of The Complex Between The
Extracellular Domains Of Mouse Pd-1 Mutant And Human
Pd-L1
pdb|3SBW|B Chain B, Crystal Structure Of The Complex Between The
Extracellular Domains Of Mouse Pd-1 Mutant And Human
Pd-L1
Length = 117
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 12 LTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYEC 53
+ G D RF++I P D+ + + + D+GIY C
Sbjct: 49 FSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLC 90
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 66 LTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYEC 107
+ G D RF++I P D+ + + + D+GIY C
Sbjct: 49 FSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLC 90
>pdb|3RNQ|A Chain A, Crystal Structure Of The Complex Between The
Extracellular Domains Of Mouse Pd-1 Mutant And Pd-L2
Length = 117
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 12 LTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYEC 53
+ G D RF++I P D+ + + + D+GIY C
Sbjct: 49 FSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLC 90
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 66 LTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYEC 107
+ G D RF++I P D+ + + + D+GIY C
Sbjct: 49 FSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLC 90
>pdb|2BRR|H Chain H, Complex Of The Neisserial Pora P1.4 Epitope Peptide And
Two Fab-Fragments (Antibody Mn20b9.34)
pdb|2BRR|Y Chain Y, Complex Of The Neisserial Pora P1.4 Epitope Peptide And
Two Fab-Fragments (Antibody Mn20b9.34)
Length = 225
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 68 TGRYTYTND--QRFRVINNPTSDDWTLQLKYPQHKDTGIYECQ----VSTTPHQAHYIYL 121
TG TY +D +RF ++ LQ+ +++DT Y C ST P+ A +
Sbjct: 55 TGEPTYADDFKERFAFSLETSASAAYLQINNLKNEDTATYFCARDYYGSTYPYYAMDYWG 114
Query: 122 TVVVLVINDGKYLLVPE--PETDIIGGPEVFIENGSTINLTCVVR-FSPEPPAYIFWNHN 178
+ ++ K P P + G GS++ L C+V+ + PE P + WN
Sbjct: 115 QGTTVTVSSAK-TTAPSVYPLAPVCGD-----TTGSSVTLGCLVKGYFPE-PVTLTWNSG 167
Query: 179 E 179
Sbjct: 168 S 168
>pdb|3AAZ|B Chain B, Crystal Structure Of The Humanized Recombinant Fab
Fragment Of A Murine; Antibody
pdb|3AAZ|L Chain L, Crystal Structure Of The Humanized Recombinant Fab
Fragment Of A Murine; Antibody
Length = 229
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 33/155 (21%)
Query: 80 RVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEP 139
R + + D+TL++ + +D G+Y C ++V L G L +
Sbjct: 66 RFSGSGSGTDFTLKISRVEAEDVGVYYC-----------FQASLVPLTFGQGTKLEIKR- 113
Query: 140 ETDIIGGPEVFI-------ENGSTINLTCVV-RFSPEPPAYIFWNHNEAIISYDSQRGGV 191
+ P VFI T ++ C++ F P A + W + A+ S +SQ
Sbjct: 114 ---TVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPR-EAKVQWKVDNALQSGNSQES-- 167
Query: 192 NVITEKGETTVSY-----LLIQKARPSDNGKYQCN 221
+TE+ +Y L + KA + Y C
Sbjct: 168 --VTEQDSKDSTYSLSSTLTLSKADYEKHKVYACE 200
>pdb|3BIK|B Chain B, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIK|C Chain C, Crystal Structure Of The Pd-1PD-L1 Complex
Length = 134
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYEC 53
D RF++I P D+ + + + D+GIY C
Sbjct: 69 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLC 100
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 76 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYEC 107
D RF++I P D+ + + + D+GIY C
Sbjct: 69 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLC 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,735,704
Number of Sequences: 62578
Number of extensions: 347556
Number of successful extensions: 2555
Number of sequences better than 100.0: 144
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 129
Number of HSP's that attempted gapping in prelim test: 2453
Number of HSP's gapped (non-prelim): 242
length of query: 236
length of database: 14,973,337
effective HSP length: 96
effective length of query: 140
effective length of database: 8,965,849
effective search space: 1255218860
effective search space used: 1255218860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)