Query psy10361
Match_columns 236
No_of_seqs 157 out of 1829
Neff 11.1
Searched_HMMs 46136
Date Fri Aug 16 15:56:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10361.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10361hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.9 8.8E-23 1.9E-27 172.5 19.7 180 34-236 292-515 (1051)
2 PHA02785 IL-beta-binding prote 99.9 8.6E-21 1.9E-25 147.9 22.6 133 89-232 176-321 (326)
3 KOG3513|consensus 99.9 1.3E-21 2.7E-26 165.6 18.2 180 35-236 192-422 (1051)
4 KOG4221|consensus 99.8 1.3E-17 2.9E-22 141.7 18.1 179 35-235 95-326 (1381)
5 KOG4194|consensus 99.8 6.7E-18 1.4E-22 134.9 14.2 167 35-227 573-785 (873)
6 KOG4221|consensus 99.8 1.5E-17 3.3E-22 141.4 14.4 180 19-227 181-405 (1381)
7 PHA02826 IL-1 receptor-like pr 99.7 7.9E-16 1.7E-20 113.4 17.2 111 89-226 97-211 (227)
8 KOG4194|consensus 99.7 1.4E-16 3E-21 127.5 12.5 126 89-235 573-704 (873)
9 KOG4222|consensus 99.7 1.9E-15 4E-20 128.3 14.0 169 35-228 186-401 (1281)
10 cd05762 Ig8_MLCK Eighth immuno 99.6 2.1E-14 4.6E-19 92.2 11.4 83 146-236 7-92 (98)
11 cd05737 Ig_Myomesin_like_C C-t 99.6 5.7E-14 1.2E-18 89.4 10.8 76 146-228 8-83 (92)
12 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 4.2E-14 9.2E-19 88.6 9.3 74 148-228 4-77 (86)
13 cd04975 Ig4_SCFR_like Fourth i 99.6 1.1E-13 2.4E-18 89.1 11.0 76 147-227 11-89 (101)
14 KOG4222|consensus 99.5 6E-14 1.3E-18 119.3 12.0 134 70-227 163-302 (1281)
15 cd05851 Ig3_Contactin-1 Third 99.5 9E-14 2E-18 87.6 9.6 71 146-228 8-78 (88)
16 cd05745 Ig3_Peroxidasin Third 99.5 4.4E-14 9.5E-19 86.2 7.9 65 153-228 1-65 (74)
17 cd05852 Ig5_Contactin-1 Fifth 99.5 7.1E-14 1.5E-18 84.7 8.5 64 154-228 1-64 (73)
18 cd05892 Ig_Myotilin_C C-termin 99.5 1.1E-13 2.4E-18 84.1 9.0 66 157-228 1-66 (75)
19 cd05867 Ig4_L1-CAM_like Fourth 99.5 1.1E-13 2.5E-18 84.8 9.2 72 154-234 1-75 (76)
20 cd05868 Ig4_NrCAM Fourth immun 99.5 1.4E-13 3E-18 84.3 9.2 73 154-235 1-76 (76)
21 cd05854 Ig6_Contactin-2 Sixth 99.5 3E-13 6.5E-18 84.6 10.5 79 155-235 1-82 (85)
22 cd05735 Ig8_DSCAM Eight immuno 99.5 3.5E-13 7.5E-18 84.9 10.9 78 154-235 1-82 (88)
23 cd05771 IgC_Tapasin_R Tapasin- 99.5 5.8E-13 1.3E-17 91.5 12.6 123 91-226 2-131 (139)
24 cd05747 Ig5_Titin_like M5, fif 99.5 6.8E-13 1.5E-17 84.5 12.0 77 144-228 8-84 (92)
25 cd05891 Ig_M-protein_C C-termi 99.5 4.4E-13 9.5E-18 85.2 11.1 82 146-234 8-90 (92)
26 cd05760 Ig2_PTK7 Second immuno 99.5 2.5E-13 5.4E-18 83.4 9.2 71 157-236 1-76 (77)
27 PHA02785 IL-beta-binding prote 99.5 5E-13 1.1E-17 104.5 13.0 114 90-227 82-201 (326)
28 cd05730 Ig3_NCAM-1_like Third 99.5 4.6E-13 9.9E-18 85.9 10.4 79 148-235 12-93 (95)
29 cd04969 Ig5_Contactin_like Fif 99.5 2.5E-13 5.5E-18 82.6 8.7 64 154-228 1-64 (73)
30 cd05865 Ig1_NCAM-1 First immun 99.5 4.8E-13 1E-17 85.4 10.3 77 146-227 7-85 (96)
31 cd05893 Ig_Palladin_C C-termin 99.5 3.2E-13 6.8E-18 82.2 8.7 66 157-228 1-66 (75)
32 cd05870 Ig5_NCAM-2 Fifth immun 99.5 6E-13 1.3E-17 85.7 10.5 79 145-228 7-89 (98)
33 cd04972 Ig_TrkABC_d4 Fourth do 99.5 1.2E-12 2.6E-17 83.0 11.5 74 147-228 8-81 (90)
34 cd05857 Ig2_FGFR Second immuno 99.5 3E-13 6.6E-18 84.8 8.7 73 149-228 4-76 (85)
35 cd04978 Ig4_L1-NrCAM_like Four 99.5 4.1E-13 8.8E-18 82.4 9.0 73 154-235 1-76 (76)
36 cd05732 Ig5_NCAM-1_like Fifth 99.5 8.3E-13 1.8E-17 84.9 10.4 79 145-228 7-87 (96)
37 cd05728 Ig4_Contactin-2-like F 99.5 5.8E-13 1.3E-17 83.4 9.2 71 146-228 6-76 (85)
38 cd05723 Ig4_Neogenin Fourth im 99.5 6.4E-13 1.4E-17 80.3 9.0 62 156-228 1-62 (71)
39 cd05863 Ig2_VEGFR-3 Second imm 99.5 2.3E-13 5E-18 80.5 6.8 55 157-227 1-55 (67)
40 cd05763 Ig_1 Subgroup of the i 99.5 4.3E-13 9.3E-18 82.0 8.0 72 157-235 1-75 (75)
41 cd05740 Ig_CEACAM_D4 Fourth im 99.5 9.1E-13 2E-17 83.4 9.1 70 147-228 11-80 (91)
42 cd05743 Ig_Perlecan_D2_like Im 99.5 1.3E-12 2.8E-17 80.5 9.5 66 154-227 1-66 (78)
43 cd05866 Ig1_NCAM-2 First immun 99.5 1.9E-12 4E-17 81.9 10.4 74 146-228 7-81 (92)
44 cd04968 Ig3_Contactin_like Thi 99.4 1.9E-12 4.2E-17 81.7 10.4 71 146-228 8-78 (88)
45 cd05748 Ig_Titin_like Immunogl 99.4 1.7E-12 3.6E-17 79.2 9.8 65 156-228 1-65 (74)
46 cd05859 Ig4_PDGFR-alpha Fourth 99.4 6.3E-13 1.4E-17 85.7 8.1 82 148-234 12-99 (101)
47 cd05744 Ig_Myotilin_C_like Imm 99.4 1.5E-12 3.2E-17 79.5 9.3 66 157-228 1-66 (75)
48 PF07679 I-set: Immunoglobulin 99.4 2.6E-12 5.6E-17 81.5 10.7 74 146-227 7-80 (90)
49 cd05869 Ig5_NCAM-1 Fifth immun 99.4 2.9E-12 6.4E-17 82.4 10.7 75 149-228 12-88 (97)
50 cd07693 Ig1_Robo First immunog 99.4 3.9E-12 8.4E-17 82.3 11.2 81 146-228 8-89 (100)
51 cd05848 Ig1_Contactin-5 First 99.4 4.3E-12 9.4E-17 80.9 10.6 67 153-229 18-85 (94)
52 cd04977 Ig1_NCAM-1_like First 99.4 5.4E-12 1.2E-16 80.2 11.0 74 146-227 7-81 (92)
53 cd05858 Ig3_FGFR-2 Third immun 99.4 2.2E-12 4.9E-17 81.7 9.2 79 154-235 1-90 (90)
54 cd05855 Ig_TrkB_d5 Fifth domai 99.4 3.2E-12 6.9E-17 78.1 9.3 68 158-228 2-69 (79)
55 cd04970 Ig6_Contactin_like Six 99.4 3E-12 6.4E-17 80.3 9.5 78 155-234 1-81 (85)
56 cd05724 Ig2_Robo Second immuno 99.4 3.6E-12 7.9E-17 80.1 9.8 73 146-228 3-76 (86)
57 cd05758 Ig5_KIRREL3-like Fifth 99.4 8.1E-12 1.8E-16 80.5 11.5 85 143-229 5-91 (98)
58 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 2.7E-12 5.8E-17 78.2 8.6 63 157-228 1-63 (74)
59 cd05746 Ig4_Peroxidasin Fourth 99.4 2.3E-12 4.9E-17 77.4 8.0 62 157-229 1-62 (69)
60 cd05853 Ig6_Contactin-4 Sixth 99.4 3.6E-12 7.8E-17 79.0 8.4 79 155-235 1-82 (85)
61 cd05876 Ig3_L1-CAM Third immun 99.4 2.3E-12 4.9E-17 77.8 7.4 61 157-228 1-61 (71)
62 cd04976 Ig2_VEGFR Second immun 99.4 2.8E-12 6.2E-17 77.3 7.4 60 157-228 1-60 (71)
63 cd05726 Ig4_Robo Fhird immunog 99.4 4.1E-12 9E-17 80.5 8.4 74 154-235 1-82 (90)
64 cd05850 Ig1_Contactin-2 First 99.4 2.1E-11 4.5E-16 77.8 11.4 67 154-230 19-86 (94)
65 cd05773 Ig8_hNephrin_like Eigh 99.4 7.9E-12 1.7E-16 81.9 9.5 78 153-234 22-104 (109)
66 cd05722 Ig1_Neogenin First imm 99.4 9E-12 2E-16 79.8 9.5 74 146-228 6-85 (95)
67 cd05736 Ig2_Follistatin_like S 99.4 9.3E-12 2E-16 76.3 9.1 71 157-235 1-74 (76)
68 cd04974 Ig3_FGFR Third immunog 99.4 1.1E-11 2.4E-16 78.4 9.6 78 154-234 1-89 (90)
69 cd05898 Ig5_KIRREL3 Fifth immu 99.4 2.8E-11 6E-16 77.1 11.1 89 142-232 4-94 (98)
70 cd05725 Ig3_Robo Third immunog 99.4 4.3E-12 9.4E-17 76.2 7.0 60 157-228 1-60 (69)
71 cd05856 Ig2_FGFRL1-like Second 99.4 5.4E-12 1.2E-16 78.5 7.7 69 150-228 5-73 (82)
72 cd05864 Ig2_VEGFR-2 Second imm 99.3 3.6E-12 7.9E-17 76.3 6.5 58 157-227 1-58 (70)
73 cd05764 Ig_2 Subgroup of the i 99.3 1.2E-11 2.5E-16 75.4 8.9 63 154-227 1-64 (74)
74 cd04973 Ig1_FGFR First immunog 99.3 1.2E-11 2.6E-16 76.3 8.8 68 148-228 3-70 (79)
75 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 1.7E-11 3.7E-16 75.7 9.4 68 158-228 2-71 (81)
76 cd05749 Ig2_Tyro3_like Second 99.3 1E-11 2.2E-16 76.6 8.4 69 146-230 5-74 (81)
77 cd05731 Ig3_L1-CAM_like Third 99.3 7.9E-12 1.7E-16 75.5 7.1 60 157-227 1-60 (71)
78 cd05756 Ig1_IL1R_like First im 99.3 1.3E-11 2.9E-16 78.5 8.0 75 148-228 8-85 (94)
79 cd05849 Ig1_Contactin-1 First 99.3 3.8E-11 8.2E-16 76.3 10.0 64 154-228 19-83 (93)
80 cd05739 Ig3_RPTP_IIa_LAR_like 99.3 2.6E-11 5.6E-16 72.6 8.6 61 154-228 1-61 (69)
81 cd05752 Ig1_FcgammaR_like Frst 99.3 3.1E-11 6.7E-16 73.9 8.8 70 146-233 7-77 (78)
82 cd05742 Ig1_VEGFR_like First i 99.3 2.3E-11 5E-16 76.0 8.4 73 154-227 1-73 (84)
83 cd05733 Ig6_L1-CAM_like Sixth 99.3 1.7E-11 3.6E-16 75.2 7.6 65 157-229 1-69 (77)
84 cd05750 Ig_Pro_neuregulin Immu 99.3 2.2E-11 4.8E-16 74.4 8.1 68 157-229 1-69 (75)
85 cd07702 Ig2_VEGFR-1 Second imm 99.3 2E-11 4.3E-16 73.3 7.4 60 157-227 1-60 (72)
86 cd05874 Ig6_NrCAM Sixth immuno 99.3 3.3E-11 7.1E-16 73.8 8.3 65 157-229 1-69 (77)
87 cd05765 Ig_3 Subgroup of the i 99.3 3.3E-11 7.2E-16 74.8 8.0 67 154-228 1-72 (81)
88 cd05875 Ig6_hNeurofascin_like 99.3 5.9E-11 1.3E-15 72.7 8.7 65 157-229 1-69 (77)
89 cd05734 Ig7_DSCAM Seventh immu 99.3 4.3E-11 9.2E-16 73.9 7.8 64 157-228 1-69 (79)
90 cd04967 Ig1_Contactin First Ig 99.3 1.5E-10 3.2E-15 73.5 10.5 66 154-229 19-85 (91)
91 cd05895 Ig_Pro_neuregulin-1 Im 99.2 1.1E-10 2.4E-15 71.4 8.5 69 157-229 1-70 (76)
92 cd04979 Ig_Semaphorin_C Immuno 99.2 1.4E-10 3.1E-15 73.3 8.6 80 147-236 4-88 (89)
93 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 3.4E-10 7.3E-15 70.6 9.9 78 154-235 1-83 (84)
94 cd05882 Ig1_Necl-1 First (N-te 99.2 5.8E-10 1.2E-14 71.0 11.1 77 147-227 5-86 (95)
95 cd05862 Ig1_VEGFR First immuno 99.2 2.2E-10 4.7E-15 71.7 8.9 80 154-235 1-85 (86)
96 cd05873 Ig_Sema4D_like Immunog 99.2 2.2E-10 4.7E-15 71.3 7.7 69 146-226 3-71 (87)
97 cd07701 Ig1_Necl-3 First (N-te 99.2 1.2E-09 2.6E-14 69.7 11.1 79 147-229 5-88 (95)
98 cd05729 Ig2_FGFR_like Second i 99.1 3.5E-10 7.5E-15 70.8 8.0 73 149-228 4-76 (85)
99 cd05753 Ig2_FcgammaR_like Seco 99.1 2.3E-10 5.1E-15 71.1 7.0 65 148-227 8-72 (83)
100 cd05757 Ig2_IL1R_like Second i 99.1 4.4E-10 9.5E-15 71.1 7.6 69 149-227 5-76 (92)
101 cd05754 Ig3_Perlecan_like Thir 99.1 6.9E-10 1.5E-14 69.4 7.6 70 146-228 8-77 (85)
102 cd05727 Ig2_Contactin-2-like S 99.1 4.7E-10 1E-14 70.9 6.6 72 148-227 12-84 (96)
103 smart00408 IGc2 Immunoglobulin 99.1 1.2E-09 2.6E-14 63.8 7.9 63 153-227 1-63 (63)
104 PHA02826 IL-1 receptor-like pr 99.1 2.4E-09 5.1E-14 79.2 10.2 79 35-113 97-211 (227)
105 cd07690 Ig1_CD4 First immunogl 99.0 3E-09 6.4E-14 67.4 8.1 77 149-227 2-89 (94)
106 cd05717 Ig1_Necl-1-3_like Firs 99.0 1.1E-08 2.5E-13 65.3 11.0 80 147-230 5-89 (95)
107 cd05871 Ig_Semaphorin_classIII 99.0 7.9E-09 1.7E-13 65.3 8.8 77 149-235 6-89 (91)
108 PF00047 ig: Immunoglobulin do 99.0 5.1E-09 1.1E-13 61.7 7.3 63 154-222 1-64 (64)
109 cd05897 Ig2_IL1R2_like Second 98.9 3.3E-09 7.2E-14 67.1 6.4 72 149-227 5-79 (95)
110 cd05845 Ig2_L1-CAM_like Second 98.9 6.1E-09 1.3E-13 65.7 7.2 73 147-229 11-85 (95)
111 cd05860 Ig4_SCFR Fourth immuno 98.9 3.5E-08 7.6E-13 62.5 10.1 79 147-227 11-89 (101)
112 PF13895 Ig_2: Immunoglobulin 98.9 1.1E-08 2.3E-13 63.1 7.4 61 149-227 9-69 (80)
113 smart00409 IG Immunoglobulin. 98.9 9.5E-08 2.1E-12 59.2 11.7 72 148-227 3-75 (86)
114 smart00410 IG_like Immunoglobu 98.9 9.5E-08 2.1E-12 59.2 11.7 72 148-227 3-75 (86)
115 cd05885 Ig2_Necl-4 Second immu 98.9 1.2E-08 2.6E-13 62.2 6.9 66 157-227 2-67 (80)
116 cd05881 Ig1_Necl-2 First (N-te 98.9 1.2E-07 2.7E-12 60.0 11.5 82 147-232 5-91 (95)
117 cd05759 Ig2_KIRREL3-like Secon 98.9 2.8E-08 6E-13 61.7 8.2 68 156-226 1-69 (82)
118 cd05879 Ig_P0 Immunoglobulin ( 98.8 1.7E-07 3.7E-12 61.8 10.8 81 146-227 5-104 (116)
119 cd05872 Ig_Sema4B_like Immunog 98.7 8.5E-08 1.8E-12 59.3 7.5 63 148-223 5-67 (85)
120 cd04983 IgV_TCR_alpha_like Imm 98.7 2.4E-07 5.2E-12 60.8 9.4 78 146-226 5-93 (109)
121 cd05881 Ig1_Necl-2 First (N-te 98.7 4.6E-07 9.9E-12 57.4 9.7 50 72-122 45-94 (95)
122 cd05896 Ig1_IL1RAPL-1_like Fir 98.7 2.6E-07 5.6E-12 58.8 8.4 74 149-227 10-94 (104)
123 cd05883 Ig2_Necl-2 Second immu 98.7 2.5E-07 5.4E-12 56.6 8.0 66 157-226 2-67 (82)
124 cd05899 IgV_TCR_beta Immunoglo 98.6 4.3E-07 9.3E-12 59.7 9.2 75 146-225 5-94 (110)
125 cd05751 Ig1_LILRB1_like First 98.6 1.3E-07 2.8E-12 59.8 6.2 67 147-225 9-75 (91)
126 cd05882 Ig1_Necl-1 First (N-te 98.6 9E-07 2E-11 56.3 9.5 77 45-123 11-95 (95)
127 cd05714 Ig_CSPGs_LP Immunoglob 98.6 8.9E-07 1.9E-11 57.7 9.6 82 153-234 1-102 (106)
128 cd05878 Ig_Aggrecan_like Immun 98.6 9.6E-07 2.1E-11 57.9 9.7 82 153-234 1-106 (110)
129 cd05877 Ig_LP_like Immunoglobu 98.6 9.3E-07 2E-11 57.7 9.7 73 153-227 1-92 (106)
130 PHA03376 BARF1; Provisional 98.6 1.7E-05 3.7E-10 55.5 15.6 89 74-179 73-162 (221)
131 cd00098 IgC Immunoglobulin Con 98.6 2.2E-07 4.7E-12 59.4 6.0 76 152-227 11-86 (95)
132 cd05900 Ig_Aggrecan Immunoglob 98.6 1.6E-06 3.4E-11 56.9 9.9 75 153-227 1-98 (112)
133 cd05775 Ig_SLAM-CD84_like_N N- 98.6 3.8E-07 8.3E-12 58.4 6.9 70 153-228 3-86 (97)
134 cd05775 Ig_SLAM-CD84_like_N N- 98.5 1.6E-07 3.5E-12 60.1 5.0 59 1-59 22-84 (97)
135 cd05713 Ig_MOG_like Immunoglob 98.5 1.3E-06 2.7E-11 56.4 8.9 74 154-227 1-89 (100)
136 cd05735 Ig8_DSCAM Eight immuno 98.5 4.2E-06 9.2E-11 52.5 10.5 36 89-124 46-82 (88)
137 cd05852 Ig5_Contactin-1 Fifth 98.5 1.8E-06 3.9E-11 52.1 8.4 34 89-122 38-72 (73)
138 cd05715 Ig_P0-like Immunoglobu 98.5 3.3E-06 7.1E-11 56.0 10.4 81 146-227 5-104 (116)
139 cd05880 Ig_EVA1 Immunoglobulin 98.5 3E-06 6.5E-11 56.0 9.9 81 146-227 5-103 (115)
140 PF13927 Ig_3: Immunoglobulin 98.5 1.9E-07 4.2E-12 56.5 3.8 60 155-224 16-75 (75)
141 cd07701 Ig1_Necl-3 First (N-te 98.5 2.1E-06 4.5E-11 54.7 8.7 48 75-123 48-95 (95)
142 cd05741 Ig_CEACAM_D1_like Firs 98.5 1.2E-06 2.6E-11 55.5 7.6 67 154-228 1-82 (92)
143 cd00099 IgV Immunoglobulin var 98.5 3E-06 6.6E-11 55.0 9.5 76 150-227 2-91 (105)
144 cd05863 Ig2_VEGFR-3 Second imm 98.5 8.7E-07 1.9E-11 52.4 6.2 54 68-124 12-66 (67)
145 cd05755 Ig2_ICAM-1_like Second 98.5 1.4E-06 3E-11 55.6 7.5 73 149-227 11-86 (100)
146 cd05892 Ig_Myotilin_C C-termin 98.5 4.4E-06 9.6E-11 50.6 9.3 34 90-123 41-75 (75)
147 cd05774 Ig_CEACAM_D1 First imm 98.4 2.2E-06 4.7E-11 55.5 8.4 70 150-227 9-94 (105)
148 cd04980 IgV_L_kappa Immunoglob 98.4 3.3E-06 7.1E-11 55.1 8.7 76 146-225 7-93 (106)
149 cd05853 Ig6_Contactin-4 Sixth 98.4 2.3E-06 4.9E-11 53.1 7.5 36 89-124 46-82 (85)
150 cd05866 Ig1_NCAM-2 First immun 98.4 1.7E-05 3.8E-10 50.1 11.6 71 43-116 12-82 (92)
151 cd05893 Ig_Palladin_C C-termin 98.4 5.8E-06 1.3E-10 50.1 9.1 34 90-123 41-75 (75)
152 cd05864 Ig2_VEGFR-2 Second imm 98.4 7.6E-07 1.6E-11 53.2 5.0 55 69-123 13-68 (70)
153 cd05865 Ig1_NCAM-1 First immun 98.4 7.1E-06 1.5E-10 52.3 9.6 73 43-123 12-95 (96)
154 cd05718 Ig1_PVR_like First imm 98.4 3.4E-06 7.3E-11 54.1 8.2 79 155-235 1-98 (98)
155 cd05901 Ig_Versican Immunoglob 98.4 8.3E-06 1.8E-10 53.5 9.7 74 154-227 2-103 (117)
156 cd04982 IgV_TCR_gamma Immunogl 98.4 1.1E-05 2.3E-10 53.5 10.6 79 146-225 5-99 (116)
157 cd05902 Ig_Neurocan Immunoglob 98.4 6.6E-06 1.4E-10 53.7 9.1 81 154-234 2-106 (110)
158 cd05761 Ig2_Necl-1-4_like Seco 98.4 2.2E-06 4.7E-11 53.1 6.5 67 157-227 2-69 (82)
159 cd05894 Ig_C5_MyBP-C C5 immuno 98.3 1.1E-05 2.4E-10 50.4 9.5 34 89-122 51-85 (86)
160 cd04984 IgV_L_lambda Immunoglo 98.3 6.5E-06 1.4E-10 52.8 8.5 73 150-225 2-85 (98)
161 cd04970 Ig6_Contactin_like Six 98.3 1.1E-05 2.3E-10 50.3 9.2 37 88-124 45-82 (85)
162 cd04977 Ig1_NCAM-1_like First 98.3 1.8E-05 3.9E-10 50.1 10.3 70 43-122 12-91 (92)
163 cd05711 Ig_FcalphaRI Immunoglo 98.3 5.5E-06 1.2E-10 52.7 7.7 69 146-223 7-75 (94)
164 cd05854 Ig6_Contactin-2 Sixth 98.3 1.5E-05 3.3E-10 49.6 9.4 36 89-124 46-82 (85)
165 cd04983 IgV_TCR_alpha_like Imm 98.3 2.5E-06 5.4E-11 55.9 6.2 58 1-58 30-92 (109)
166 cd05762 Ig8_MLCK Eighth immuno 98.3 2.6E-05 5.7E-10 50.0 10.3 37 88-124 54-91 (98)
167 cd07700 IgV_CD8_beta Immunoglo 98.3 1.8E-05 3.8E-10 51.7 9.6 74 150-225 2-94 (107)
168 cd05884 Ig2_Necl-3 Second immu 98.3 4.5E-06 9.7E-11 51.7 6.4 66 157-226 2-69 (83)
169 cd05744 Ig_Myotilin_C_like Imm 98.3 2.3E-05 5E-10 47.5 9.4 34 89-122 40-74 (75)
170 cd04968 Ig3_Contactin_like Thi 98.3 7.1E-06 1.5E-10 51.5 7.3 36 88-123 51-87 (88)
171 cd05764 Ig_2 Subgroup of the i 98.3 1.3E-05 2.8E-10 48.5 8.2 34 89-122 39-73 (74)
172 smart00406 IGv Immunoglobulin 98.2 3E-06 6.6E-11 52.1 5.4 55 1-55 18-81 (81)
173 cd05716 Ig_pIgR Immunoglobulin 98.2 1.5E-05 3.3E-10 51.1 8.8 76 149-226 2-87 (98)
174 cd05851 Ig3_Contactin-1 Third 98.2 5.4E-06 1.2E-10 52.0 6.5 35 89-123 52-87 (88)
175 cd05730 Ig3_NCAM-1_like Third 98.2 2.2E-05 4.8E-10 50.0 9.5 36 89-124 57-93 (95)
176 cd05745 Ig3_Peroxidasin Third 98.2 1.1E-05 2.5E-10 48.7 7.7 34 89-122 39-73 (74)
177 cd04971 Ig_TrKABC_d5 Fifth dom 98.2 6.5E-06 1.4E-10 50.7 6.6 28 89-116 45-72 (81)
178 cd05717 Ig1_Necl-1-3_like Firs 98.2 2E-05 4.4E-10 50.2 9.1 47 76-123 49-95 (95)
179 PF07686 V-set: Immunoglobulin 98.2 1.2E-05 2.6E-10 52.8 8.2 78 146-225 8-101 (114)
180 cd07699 IgC_L Immunoglobulin C 98.2 3.5E-06 7.5E-11 54.2 5.4 75 152-226 15-89 (100)
181 cd04969 Ig5_Contactin_like Fif 98.2 2E-05 4.2E-10 47.6 8.3 34 89-122 38-72 (73)
182 cd05886 Ig1_Nectin-1_like Firs 98.2 4.1E-05 8.8E-10 49.0 10.1 77 156-234 2-98 (99)
183 cd05876 Ig3_L1-CAM Third immun 98.2 3.4E-06 7.3E-11 50.6 4.9 36 88-123 34-70 (71)
184 cd05740 Ig_CEACAM_D4 Fourth im 98.2 2.7E-05 5.8E-10 49.2 9.1 35 89-123 54-90 (91)
185 cd05857 Ig2_FGFR Second immuno 98.2 1.1E-05 2.4E-10 50.2 7.3 35 88-122 49-84 (85)
186 PF07679 I-set: Immunoglobulin 98.2 2.1E-05 4.5E-10 49.5 8.5 69 45-123 14-90 (90)
187 smart00407 IGc1 Immunoglobulin 98.2 1.3E-05 2.7E-10 48.7 7.1 70 157-226 2-71 (75)
188 cd05870 Ig5_NCAM-2 Fifth immun 98.2 2.6E-05 5.6E-10 50.0 8.9 34 89-122 63-97 (98)
189 cd05748 Ig_Titin_like Immunogl 98.2 1.3E-05 2.8E-10 48.5 7.0 35 88-122 38-73 (74)
190 cd05715 Ig_P0-like Immunoglobu 98.2 7.4E-06 1.6E-10 54.3 6.4 38 23-60 67-104 (116)
191 cd05855 Ig_TrkB_d5 Fifth domai 98.2 8.8E-06 1.9E-10 49.7 6.1 28 89-116 43-70 (79)
192 cd05763 Ig_1 Subgroup of the i 98.2 8.2E-06 1.8E-10 49.5 5.9 35 89-123 39-74 (75)
193 cd07705 Ig2_Necl-1 Second immu 98.2 1.4E-05 3.1E-10 49.4 7.0 67 157-227 2-70 (83)
194 cd05726 Ig4_Robo Fhird immunog 98.2 2.2E-05 4.8E-10 49.5 8.0 36 89-124 46-82 (90)
195 cd05725 Ig3_Robo Third immunog 98.2 1.2E-05 2.7E-10 47.8 6.5 34 89-122 34-68 (69)
196 cd04976 Ig2_VEGFR Second immun 98.2 6.2E-06 1.3E-10 49.5 5.2 36 89-124 34-70 (71)
197 cd05712 Ig_Siglec_N Immunoglob 98.1 4.4E-05 9.5E-10 50.8 9.7 79 146-225 6-102 (119)
198 cd05879 Ig_P0 Immunoglobulin ( 98.1 1.2E-05 2.6E-10 53.1 6.9 37 23-59 67-103 (116)
199 cd05888 Ig1_Nectin-4_like Frst 98.1 1.1E-05 2.4E-10 51.9 6.6 37 23-59 51-87 (100)
200 cd05723 Ig4_Neogenin Fourth im 98.1 4.2E-05 9E-10 45.8 8.6 33 90-122 37-70 (71)
201 cd05737 Ig_Myomesin_like_C C-t 98.1 6.1E-05 1.3E-09 47.6 9.7 33 89-121 57-90 (92)
202 cd05867 Ig4_L1-CAM_like Fourth 98.1 5.7E-05 1.2E-09 45.9 9.2 35 89-123 40-75 (76)
203 cd05738 Ig2_RPTP_IIa_LAR_like 98.1 5.4E-05 1.2E-09 45.7 9.0 35 89-123 37-73 (74)
204 cd05716 Ig_pIgR Immunoglobulin 98.1 4.8E-06 1E-10 53.4 4.6 58 1-58 25-86 (98)
205 cd00099 IgV Immunoglobulin var 98.1 8.6E-06 1.9E-10 52.9 5.7 39 21-59 52-90 (105)
206 cd05746 Ig4_Peroxidasin Fourth 98.1 1.1E-05 2.4E-10 48.1 5.6 28 89-116 35-62 (69)
207 cd05846 Ig1_MRC-OX-2_like Firs 98.1 2.6E-05 5.6E-10 49.9 7.3 78 154-234 1-96 (97)
208 cd07706 IgV_TCR_delta Immunogl 98.1 4.8E-05 1E-09 50.4 8.9 77 146-224 6-93 (116)
209 cd05728 Ig4_Contactin-2-like F 98.1 5.7E-05 1.2E-09 47.0 8.6 72 43-122 11-84 (85)
210 PF07686 V-set: Immunoglobulin 98.1 1.1E-05 2.4E-10 53.0 5.5 38 21-58 64-101 (114)
211 cd05732 Ig5_NCAM-1_like Fifth 98.1 7E-05 1.5E-09 47.7 9.1 35 88-122 60-95 (96)
212 cd05724 Ig2_Robo Second immuno 98.1 2.9E-05 6.4E-10 48.3 7.2 34 89-122 50-85 (86)
213 cd07706 IgV_TCR_delta Immunogl 98.1 8.7E-06 1.9E-10 54.0 5.0 57 1-57 32-93 (116)
214 cd05760 Ig2_PTK7 Second immuno 98.1 9.5E-05 2.1E-09 45.0 9.2 28 89-116 37-64 (77)
215 cd04972 Ig_TrkABC_d4 Fourth do 98.1 0.00012 2.5E-09 46.1 9.9 72 43-122 12-89 (90)
216 cd04978 Ig4_L1-NrCAM_like Four 98.0 6.3E-05 1.4E-09 45.6 8.3 36 88-123 39-75 (76)
217 cd04984 IgV_L_lambda Immunoglo 98.0 1.8E-05 3.9E-10 50.7 6.0 55 1-57 25-84 (98)
218 cd05847 IgC_CH2_IgE CH2 domain 98.0 2.1E-05 4.5E-10 49.9 6.1 73 154-226 14-86 (94)
219 cd05731 Ig3_L1-CAM_like Third 98.0 1.5E-05 3.3E-10 47.6 5.3 35 89-123 35-70 (71)
220 cd05868 Ig4_NrCAM Fourth immun 98.0 0.0001 2.2E-09 44.8 8.9 35 89-123 40-75 (76)
221 cd05869 Ig5_NCAM-1 Fifth immun 98.0 0.00013 2.7E-09 46.7 9.8 34 89-122 62-96 (97)
222 PHA02987 Ig domain OX-2-like p 98.0 3.9E-05 8.6E-10 53.9 7.8 74 148-225 24-107 (189)
223 cd04981 IgV_H Immunoglobulin ( 98.0 0.00012 2.5E-09 48.6 9.9 78 146-224 4-97 (117)
224 cd05880 Ig_EVA1 Immunoglobulin 98.0 2.5E-05 5.3E-10 51.7 6.6 37 23-59 66-102 (115)
225 cd05887 Ig1_Nectin-3_like Firs 98.0 0.00012 2.7E-09 46.4 9.4 78 155-235 1-96 (96)
226 cd04973 Ig1_FGFR First immunog 98.0 5.1E-05 1.1E-09 46.5 7.5 26 90-115 45-70 (79)
227 cd04975 Ig4_SCFR_like Fourth i 98.0 7.4E-05 1.6E-09 48.1 8.5 36 89-124 64-100 (101)
228 cd05889 Ig1_DNAM-1_like First 98.0 3.8E-05 8.3E-10 48.8 7.0 37 22-59 47-83 (96)
229 cd05886 Ig1_Nectin-1_like Firs 98.0 2.6E-05 5.6E-10 49.9 6.2 37 22-59 50-86 (99)
230 cd04974 Ig3_FGFR Third immunog 98.0 7.2E-05 1.6E-09 47.1 8.2 35 89-123 54-89 (90)
231 cd05858 Ig3_FGFR-2 Third immun 98.0 7.2E-05 1.6E-09 47.1 8.2 34 90-123 55-89 (90)
232 cd05714 Ig_CSPGs_LP Immunoglob 98.0 2E-05 4.4E-10 51.3 5.7 28 31-58 63-90 (106)
233 cd07698 IgC_MHC_I_alpha3 Class 98.0 5.7E-05 1.2E-09 47.9 7.5 70 154-226 14-83 (93)
234 cd07700 IgV_CD8_beta Immunoglo 98.0 2.2E-05 4.7E-10 51.2 5.8 35 22-56 58-92 (107)
235 cd05859 Ig4_PDGFR-alpha Fourth 98.0 8.5E-05 1.8E-09 47.8 8.4 77 40-124 12-100 (101)
236 cd05713 Ig_MOG_like Immunoglob 98.0 0.00021 4.7E-09 45.9 10.2 36 88-123 63-99 (100)
237 cd05856 Ig2_FGFRL1-like Second 98.0 7.2E-05 1.6E-09 46.0 7.7 33 89-121 47-80 (82)
238 cd05720 Ig_CD8_alpha Immunoglo 98.0 6.2E-05 1.3E-09 48.8 7.7 70 151-225 3-91 (104)
239 cd05712 Ig_Siglec_N Immunoglob 98.0 2.1E-05 4.4E-10 52.4 5.5 36 22-57 66-101 (119)
240 cd05861 Ig1_PDGFR-alphabeta Fr 98.0 0.00016 3.5E-09 44.8 9.2 36 89-124 45-83 (84)
241 cd05899 IgV_TCR_beta Immunoglo 98.0 2.7E-05 5.9E-10 51.1 6.0 35 22-57 59-93 (110)
242 cd05743 Ig_Perlecan_D2_like Im 98.0 0.00012 2.6E-09 44.7 8.5 29 88-116 40-68 (78)
243 cd05752 Ig1_FcgammaR_like Frst 98.0 2.9E-05 6.4E-10 47.4 5.6 66 44-123 13-78 (78)
244 cd05768 IgC_CH4 CH4 domain (fo 98.0 2.3E-05 5E-10 50.5 5.3 73 153-226 15-91 (102)
245 cd05769 IgC_TCR_beta T cell re 98.0 3E-05 6.4E-10 51.0 5.8 74 153-226 17-92 (115)
246 cd05891 Ig_M-protein_C C-termi 97.9 0.00025 5.5E-09 44.8 9.7 33 90-122 58-91 (92)
247 cd05742 Ig1_VEGFR_like First i 97.9 8.6E-05 1.9E-09 46.1 7.4 35 89-123 48-83 (84)
248 cd05747 Ig5_Titin_like M5, fif 97.9 0.00028 6E-09 44.6 9.8 28 89-116 58-85 (92)
249 cd05718 Ig1_PVR_like First imm 97.9 4.9E-05 1.1E-09 48.6 6.3 35 22-57 49-83 (98)
250 cd05736 Ig2_Follistatin_like S 97.9 7.7E-05 1.7E-09 45.3 6.9 36 89-124 38-74 (76)
251 cd05757 Ig2_IL1R_like Second i 97.9 3.9E-05 8.5E-10 48.5 5.6 27 88-114 50-76 (92)
252 cd00096 Ig Immunoglobulin doma 97.9 7.4E-05 1.6E-09 43.9 6.7 66 157-226 1-66 (74)
253 cd05900 Ig_Aggrecan Immunoglob 97.9 7.4E-05 1.6E-09 49.0 7.0 36 23-58 60-96 (112)
254 cd05741 Ig_CEACAM_D1_like Firs 97.9 1.2E-05 2.6E-10 50.8 3.3 33 22-59 48-80 (92)
255 cd05878 Ig_Aggrecan_like Immun 97.9 4.6E-05 1E-09 49.9 6.0 58 1-58 29-94 (110)
256 cd07697 IgC_TCR_gamma T cell r 97.9 5.8E-05 1.3E-09 47.9 6.1 71 153-226 15-85 (96)
257 cd05756 Ig1_IL1R_like First im 97.9 3.6E-05 7.9E-10 48.9 5.2 34 89-122 59-93 (94)
258 cd05902 Ig_Neurocan Immunoglob 97.9 3.6E-05 7.8E-10 50.3 5.2 37 21-57 56-93 (110)
259 cd05889 Ig1_DNAM-1_like First 97.9 0.001 2.2E-08 42.3 11.7 47 77-124 48-94 (96)
260 cd05877 Ig_LP_like Immunoglobu 97.9 0.00011 2.3E-09 47.9 7.5 37 22-59 55-91 (106)
261 cd05766 IgC_MHC_II_beta Class 97.9 0.00022 4.9E-09 45.2 8.7 71 153-227 13-84 (94)
262 cd07690 Ig1_CD4 First immunogl 97.9 2.4E-05 5.2E-10 49.5 4.1 39 22-60 50-89 (94)
263 cd05772 IgC_SIRP Signal-regula 97.9 0.0002 4.4E-09 46.8 8.6 74 150-226 17-92 (111)
264 cd05895 Ig_Pro_neuregulin-1 Im 97.9 8E-05 1.7E-09 45.2 6.4 29 33-61 41-69 (76)
265 cd05750 Ig_Pro_neuregulin Immu 97.9 7.5E-05 1.6E-09 45.1 6.2 29 88-116 41-69 (75)
266 cd04980 IgV_L_kappa Immunoglob 97.9 4.2E-05 9E-10 49.8 5.3 54 1-56 33-91 (106)
267 smart00406 IGv Immunoglobulin 97.9 0.00017 3.6E-09 44.2 7.8 66 156-222 1-81 (81)
268 PF08205 C2-set_2: CD80-like C 97.8 4.6E-05 1E-09 47.8 5.2 70 154-227 14-85 (89)
269 cd05734 Ig7_DSCAM Seventh immu 97.8 7.1E-05 1.5E-09 45.8 5.9 34 89-122 43-78 (79)
270 cd05862 Ig1_VEGFR First immuno 97.8 0.00028 6.1E-09 44.0 8.5 36 89-124 49-85 (86)
271 cd05767 IgC_MHC_II_alpha Class 97.8 0.0002 4.4E-09 45.3 7.9 70 154-226 15-84 (94)
272 cd05887 Ig1_Nectin-3_like Firs 97.8 0.00046 9.9E-09 43.8 9.3 46 77-123 48-95 (96)
273 cd04982 IgV_TCR_gamma Immunogl 97.8 5.1E-05 1.1E-09 50.3 5.1 36 22-57 63-98 (116)
274 cd05846 Ig1_MRC-OX-2_like Firs 97.8 4.9E-05 1.1E-09 48.6 4.9 35 23-58 49-83 (97)
275 cd05770 IgC_beta2m Class I maj 97.8 0.00037 8.1E-09 44.0 8.5 70 153-226 14-83 (93)
276 cd07696 IgC_CH3 CH3 domain (th 97.8 0.00013 2.8E-09 46.5 6.2 75 151-226 11-86 (96)
277 cd07702 Ig2_VEGFR-1 Second imm 97.8 0.00028 6.1E-09 42.2 7.3 25 89-113 35-59 (72)
278 PHA03376 BARF1; Provisional 97.7 0.00013 2.7E-09 51.3 6.4 56 1-58 46-109 (221)
279 cd07694 Ig2_CD4 Second immunog 97.7 0.00031 6.8E-09 43.2 7.3 64 150-225 10-73 (88)
280 cd05765 Ig_3 Subgroup of the i 97.7 7.3E-05 1.6E-09 45.9 4.6 34 89-122 46-80 (81)
281 cd05871 Ig_Semaphorin_classIII 97.7 7E-05 1.5E-09 47.2 4.5 22 36-57 53-74 (91)
282 cd05773 Ig8_hNephrin_like Eigh 97.7 0.0015 3.3E-08 42.6 10.8 36 89-124 68-105 (109)
283 PF07654 C1-set: Immunoglobuli 97.7 0.00012 2.6E-09 45.3 5.3 70 154-226 8-77 (83)
284 cd05888 Ig1_Nectin-4_like Frst 97.7 0.00026 5.7E-09 45.5 6.9 47 77-123 51-99 (100)
285 cd05720 Ig_CD8_alpha Immunoglo 97.6 0.00013 2.7E-09 47.4 5.0 33 22-56 57-89 (104)
286 cd05774 Ig_CEACAM_D1 First imm 97.6 0.00014 3.1E-09 47.0 5.2 33 22-59 61-93 (105)
287 PF00047 ig: Immunoglobulin do 97.6 0.00011 2.3E-09 42.9 4.2 19 37-55 46-64 (64)
288 cd05849 Ig1_Contactin-1 First 97.6 0.0011 2.4E-08 42.0 9.0 28 89-116 56-84 (93)
289 cd05898 Ig5_KIRREL3 Fifth immu 97.6 0.00093 2E-08 42.6 8.5 74 43-116 13-91 (98)
290 cd05754 Ig3_Perlecan_like Thir 97.6 0.00032 7E-09 43.5 6.4 28 89-116 51-78 (85)
291 cd05733 Ig6_L1-CAM_like Sixth 97.6 0.00027 5.8E-09 43.0 5.8 28 89-116 38-69 (77)
292 cd07691 Ig_CD3_gamma_delta Imm 97.6 0.00044 9.5E-09 40.2 6.1 59 153-233 5-64 (69)
293 cd04981 IgV_H Immunoglobulin ( 97.6 0.00017 3.7E-09 47.8 5.2 36 22-57 62-97 (117)
294 cd05749 Ig2_Tyro3_like Second 97.6 0.00098 2.1E-08 41.0 8.2 63 43-116 10-73 (81)
295 cd05850 Ig1_Contactin-2 First 97.6 0.0026 5.7E-08 40.3 10.4 28 89-116 57-85 (94)
296 cd04986 IgC_CH2 CH2 domain (se 97.6 0.00019 4.2E-09 45.7 4.8 73 152-227 17-90 (99)
297 cd05753 Ig2_FcgammaR_like Seco 97.6 0.00031 6.8E-09 43.4 5.7 35 88-122 46-82 (83)
298 cd05897 Ig2_IL1R2_like Second 97.5 0.00028 6E-09 44.7 5.4 25 89-113 54-78 (95)
299 cd05901 Ig_Versican Immunoglob 97.5 0.00041 8.9E-09 45.6 6.3 38 22-59 64-102 (117)
300 cd05727 Ig2_Contactin-2-like S 97.5 0.00012 2.5E-09 46.5 3.6 27 34-60 58-84 (96)
301 cd05848 Ig1_Contactin-5 First 97.5 0.0025 5.4E-08 40.4 9.8 28 89-116 57-85 (94)
302 cd05758 Ig5_KIRREL3-like Fifth 97.5 0.002 4.2E-08 41.2 9.3 27 90-116 64-91 (98)
303 cd07692 Ig_CD3_epsilon Immunog 97.5 0.00019 4.1E-09 41.4 3.9 53 152-226 5-57 (65)
304 cd05721 IgV_CTLA-4 Immunoglobu 97.5 0.0003 6.6E-09 45.7 5.2 60 1-60 33-98 (115)
305 cd05771 IgC_Tapasin_R Tapasin- 97.5 0.00063 1.4E-08 46.6 7.2 22 36-57 1-22 (139)
306 cd05739 Ig3_RPTP_IIa_LAR_like 97.5 0.00098 2.1E-08 39.6 7.0 26 89-116 37-62 (69)
307 cd05874 Ig6_NrCAM Sixth immuno 97.5 0.00084 1.8E-08 40.8 6.8 28 89-116 38-69 (77)
308 cd05875 Ig6_hNeurofascin_like 97.5 0.0023 5E-08 38.9 8.7 28 89-116 38-69 (77)
309 cd07693 Ig1_Robo First immunog 97.5 0.0013 2.8E-08 42.0 8.0 29 95-123 69-99 (100)
310 cd04985 IgC_CH1 CH1 domain (fi 97.4 0.00084 1.8E-08 42.6 6.5 73 153-226 15-87 (95)
311 cd05873 Ig_Sema4D_like Immunog 97.4 0.00031 6.6E-09 43.8 4.1 22 37-58 49-70 (87)
312 cd05729 Ig2_FGFR_like Second i 97.4 0.0027 5.9E-08 39.1 8.4 34 89-122 50-84 (85)
313 cd04979 Ig_Semaphorin_C Immuno 97.4 0.0011 2.5E-08 41.4 6.5 34 91-124 52-87 (89)
314 KOG3515|consensus 97.3 0.00096 2.1E-08 57.0 7.6 169 37-226 14-186 (741)
315 cd05722 Ig1_Neogenin First imm 97.3 0.0024 5.2E-08 40.5 7.7 33 90-122 54-94 (95)
316 cd04967 Ig1_Contactin First Ig 97.3 0.0057 1.2E-07 38.4 9.3 28 89-116 57-85 (91)
317 PHA02987 Ig domain OX-2-like p 97.3 0.00088 1.9E-08 47.3 5.7 58 1-59 48-108 (189)
318 smart00410 IG_like Immunoglobu 97.3 0.0064 1.4E-07 36.9 9.2 34 89-122 50-84 (86)
319 smart00409 IG Immunoglobulin. 97.3 0.0064 1.4E-07 36.9 9.2 34 89-122 50-84 (86)
320 cd05721 IgV_CTLA-4 Immunoglobu 97.2 0.0037 8.1E-08 40.7 7.8 79 147-226 6-97 (115)
321 cd05896 Ig1_IL1RAPL-1_like Fir 97.2 0.0017 3.6E-08 41.6 6.1 34 89-122 69-103 (104)
322 cd07689 Ig2_VCAM-1 Second immu 97.2 0.0034 7.4E-08 39.7 7.2 74 151-227 12-87 (99)
323 PHA02633 hypothetical protein; 97.1 0.0016 3.4E-08 37.0 4.8 37 88-124 16-53 (63)
324 cd05845 Ig2_L1-CAM_like Second 97.1 0.00057 1.2E-08 43.2 3.3 37 19-60 46-83 (95)
325 cd05719 Ig2_PVR_like Second im 97.1 0.0028 6.1E-08 40.2 6.3 66 155-226 16-82 (95)
326 cd07703 Ig2_Nectin-2_like Seco 97.1 0.0028 6E-08 40.2 6.1 66 155-226 16-82 (95)
327 cd05872 Ig_Sema4B_like Immunog 97.0 0.00079 1.7E-08 41.7 3.2 31 20-56 37-67 (85)
328 cd07704 Ig2_Nectin-3-4_like Se 97.0 0.0044 9.5E-08 39.3 6.5 76 146-226 8-84 (97)
329 smart00408 IGc2 Immunoglobulin 96.9 0.0089 1.9E-07 33.9 6.7 26 88-113 37-62 (63)
330 cd05751 Ig1_LILRB1_like First 96.7 0.015 3.2E-07 36.5 7.4 25 88-112 51-75 (91)
331 PHA03269 envelope glycoprotein 96.7 0.085 1.8E-06 42.9 12.5 130 78-222 277-413 (566)
332 PF13895 Ig_2: Immunoglobulin 96.6 0.014 3.1E-07 35.2 6.3 66 44-122 12-79 (80)
333 KOG3515|consensus 96.5 0.0033 7.2E-08 53.9 4.2 68 148-227 16-83 (741)
334 PHA03271 envelope glycoprotein 96.5 0.23 5E-06 39.7 13.5 131 78-222 195-331 (490)
335 PF13927 Ig_3: Immunoglobulin 96.3 0.0068 1.5E-07 36.1 3.8 24 34-57 52-75 (75)
336 cd05860 Ig4_SCFR Fourth immuno 96.2 0.016 3.5E-07 37.0 5.1 35 90-124 65-100 (101)
337 PHA03273 envelope glycoprotein 96.1 0.2 4.4E-06 40.6 11.7 120 90-222 198-321 (486)
338 PHA02633 hypothetical protein; 96.0 0.0072 1.6E-07 34.3 2.5 24 34-57 16-39 (63)
339 PHA03270 envelope glycoprotein 96.0 0.26 5.7E-06 39.6 11.9 119 89-222 181-304 (466)
340 cd00096 Ig Immunoglobulin doma 96.0 0.0086 1.9E-07 34.6 3.2 27 32-58 39-65 (74)
341 cd05759 Ig2_KIRREL3-like Secon 95.4 0.039 8.5E-07 33.8 4.3 23 37-59 47-69 (82)
342 PHA03052 Hypothetical protein; 95.4 0.2 4.3E-06 29.0 6.7 39 147-185 5-44 (69)
343 PF11465 Receptor_2B4: Natural 95.3 0.023 4.9E-07 36.3 3.0 42 190-236 63-108 (108)
344 cd05885 Ig2_Necl-4 Second immu 94.6 0.09 2E-06 32.1 4.4 24 37-60 44-67 (80)
345 PF11465 Receptor_2B4: Natural 94.5 0.13 2.8E-06 32.9 4.8 37 88-124 69-105 (108)
346 PHA02982 hypothetical protein; 94.4 0.16 3.5E-06 36.6 5.8 76 148-227 33-124 (251)
347 PF08204 V-set_CD47: CD47 immu 94.2 0.11 2.4E-06 34.7 4.4 73 153-226 26-108 (130)
348 cd00098 IgC Immunoglobulin Con 94.2 0.07 1.5E-06 33.5 3.3 23 37-59 63-85 (95)
349 cd05711 Ig_FcalphaRI Immunoglo 93.2 0.12 2.7E-06 32.6 3.3 22 35-56 54-75 (94)
350 KOG1480|consensus 93.1 0.046 1E-06 46.9 1.4 71 146-227 136-207 (909)
351 KOG4597|consensus 93.0 0.26 5.6E-06 40.1 5.3 76 146-227 203-281 (560)
352 PHA02982 hypothetical protein; 92.8 2.8 6.1E-05 30.6 11.5 73 88-180 98-172 (251)
353 cd07691 Ig_CD3_gamma_delta Imm 91.7 0.55 1.2E-05 27.5 4.3 33 89-124 32-64 (69)
354 smart00407 IGc1 Immunoglobulin 91.5 1.1 2.4E-05 26.7 5.8 31 21-58 40-70 (75)
355 PHA03042 CD47-like protein; Pr 91.5 1 2.3E-05 34.0 6.5 60 154-226 31-93 (286)
356 cd05761 Ig2_Necl-1-4_like Seco 91.0 0.66 1.4E-05 28.3 4.5 23 37-59 46-68 (82)
357 PF07354 Sp38: Zona-pellucida- 90.8 0.43 9.3E-06 35.9 4.0 45 10-59 16-60 (271)
358 PF07354 Sp38: Zona-pellucida- 90.2 0.59 1.3E-05 35.2 4.3 49 170-226 12-60 (271)
359 cd07694 Ig2_CD4 Second immunog 89.4 1.6 3.4E-05 27.1 5.1 36 88-124 49-84 (88)
360 PHA02865 MHC-like TNF binding 88.8 1.5 3.2E-05 34.6 5.7 23 156-178 216-238 (338)
361 PF06328 Lep_receptor_Ig: Ig-l 88.0 4.7 0.0001 25.1 6.7 66 148-221 12-80 (89)
362 cd05847 IgC_CH2_IgE CH2 domain 87.9 1.6 3.5E-05 27.5 4.7 22 37-58 64-85 (94)
363 cd07705 Ig2_Necl-1 Second immu 87.8 1.7 3.6E-05 26.6 4.6 23 37-59 47-69 (83)
364 PF08204 V-set_CD47: CD47 immu 87.6 0.15 3.2E-06 34.2 -0.2 57 1-59 49-108 (130)
365 cd05884 Ig2_Necl-3 Second immu 87.6 1.9 4.1E-05 26.5 4.7 23 37-59 47-69 (83)
366 PHA02914 Immunoglobulin-like d 85.2 6.4 0.00014 31.8 7.4 79 148-226 273-369 (500)
367 cd07699 IgC_L Immunoglobulin C 85.0 2.4 5.3E-05 27.0 4.4 31 21-58 58-88 (100)
368 cd07698 IgC_MHC_I_alpha3 Class 84.3 5.4 0.00012 24.9 5.7 20 37-59 64-83 (93)
369 cd05770 IgC_beta2m Class I maj 84.2 5 0.00011 25.3 5.5 29 20-58 54-82 (93)
370 cd07696 IgC_CH3 CH3 domain (th 83.6 3.4 7.4E-05 26.2 4.6 22 37-58 64-85 (96)
371 PF11049 KSHV_K1: Glycoprotein 82.3 4.6 9.9E-05 23.4 4.1 50 158-230 2-51 (71)
372 PHA02914 Immunoglobulin-like d 81.0 29 0.00062 28.3 12.9 120 88-227 344-468 (500)
373 cd05767 IgC_MHC_II_alpha Class 80.7 8.9 0.00019 24.2 5.7 30 19-58 54-83 (94)
374 cd05883 Ig2_Necl-2 Second immu 80.4 11 0.00024 23.1 7.3 36 89-124 43-80 (82)
375 PF05790 C2-set: Immunoglobuli 79.8 11 0.00023 23.0 5.6 23 204-226 44-67 (80)
376 PHA03189 UL14 tegument protein 79.2 23 0.00051 27.6 8.2 79 146-226 59-156 (348)
377 PHA03112 IL-18 binding protein 76.1 22 0.00047 24.3 6.6 76 152-227 36-120 (141)
378 cd05772 IgC_SIRP Signal-regula 70.7 14 0.00029 24.2 4.7 22 37-59 70-92 (111)
379 PF01688 Herpes_gI: Alphaherpe 67.3 11 0.00023 26.5 3.7 24 34-57 122-145 (161)
380 cd05890 Ig2_Nectin-1_like Seco 67.0 30 0.00064 22.0 5.9 70 156-233 22-97 (98)
381 PHA03269 envelope glycoprotein 65.3 84 0.0018 26.5 13.8 32 22-53 275-306 (566)
382 PHA03042 CD47-like protein; Pr 64.3 41 0.00089 25.9 6.5 62 46-112 31-92 (286)
383 PHA03240 envelope glycoprotein 60.3 35 0.00076 25.1 5.3 25 203-227 105-129 (258)
384 PHA03282 envelope glycoprotein 59.3 12 0.00025 31.0 3.1 23 34-56 331-353 (540)
385 PHA03282 envelope glycoprotein 56.9 15 0.00033 30.4 3.4 30 22-57 116-145 (540)
386 PF06214 SLAM: Signaling lymph 55.2 26 0.00055 22.8 3.6 30 22-55 93-122 (126)
387 PF08205 C2-set_2: CD80-like C 54.2 47 0.001 20.1 6.6 22 37-58 62-83 (89)
388 cd05755 Ig2_ICAM-1_like Second 54.1 56 0.0012 20.9 7.3 25 89-114 61-86 (100)
389 cd05766 IgC_MHC_II_beta Class 52.4 56 0.0012 20.4 7.2 18 45-62 13-30 (94)
390 KOG1480|consensus 47.9 11 0.00023 33.4 1.4 28 89-116 182-209 (909)
391 PHA03290 envelope glycoprotein 45.2 34 0.00075 27.0 3.6 26 33-58 126-151 (357)
392 KOG0613|consensus 42.5 78 0.0017 30.0 5.9 135 89-228 277-418 (1205)
393 PHA03289 envelope glycoprotein 42.3 44 0.00095 26.3 3.7 25 34-58 120-144 (352)
394 KOG0200|consensus 42.2 2.3E+02 0.0049 25.0 8.6 24 88-111 11-34 (609)
395 PHA03291 envelope glycoprotein 42.0 68 0.0015 25.7 4.7 26 34-59 127-152 (401)
396 PF01688 Herpes_gI: Alphaherpe 41.6 84 0.0018 22.2 4.8 36 88-123 122-158 (161)
397 PHA03286 envelope glycoprotein 38.5 35 0.00075 28.3 2.9 30 24-56 298-327 (492)
398 PHA03292 envelope glycoprotein 38.5 48 0.001 26.8 3.6 25 34-58 126-150 (413)
399 PHA03283 envelope glycoprotein 38.4 40 0.00086 28.5 3.2 24 33-56 312-335 (542)
400 PF02480 Herpes_gE: Alphaherpe 36.4 35 0.00077 28.5 2.7 86 88-177 87-189 (439)
401 PF02480 Herpes_gE: Alphaherpe 36.2 27 0.00058 29.2 2.0 23 34-56 267-289 (439)
402 KOG0305|consensus 29.9 67 0.0015 27.2 3.3 55 2-66 350-404 (484)
403 PHA03281 envelope glycoprotein 28.2 72 0.0016 27.3 3.1 24 33-56 472-495 (642)
404 PF06832 BiPBP_C: Penicillin-B 27.1 1.6E+02 0.0034 18.0 9.2 58 156-233 31-88 (89)
405 COG5475 Uncharacterized small 26.6 1.3E+02 0.0028 16.9 3.6 21 205-227 20-40 (60)
406 PHA03286 envelope glycoprotein 26.3 4E+02 0.0086 22.5 13.0 89 89-177 126-225 (492)
407 PHA03281 envelope glycoprotein 24.1 4.8E+02 0.01 22.7 9.1 84 89-177 297-394 (642)
408 PHA03271 envelope glycoprotein 23.9 4.4E+02 0.0094 22.1 15.7 34 22-55 193-226 (490)
409 PHA03290 envelope glycoprotein 22.4 2.7E+02 0.0058 22.4 5.0 37 88-124 127-164 (357)
410 KOG4597|consensus 21.6 1E+02 0.0022 25.9 2.9 37 88-124 255-292 (560)
411 PHA03289 envelope glycoprotein 21.5 2.6E+02 0.0057 22.3 4.8 36 89-124 121-157 (352)
412 PHA03292 envelope glycoprotein 21.4 2.4E+02 0.0051 23.1 4.7 37 88-124 126-163 (413)
No 1
>KOG3513|consensus
Probab=99.91 E-value=8.8e-23 Score=172.54 Aligned_cols=180 Identities=23% Similarity=0.323 Sum_probs=131.0
Q ss_pred CceEEEEcCCCCCCCeeEEEEEEEEecceeEE----------------------------------ecceeeEEecCCcE
Q psy10361 34 DDWTLQLKYPQHKDTGIYECQVSFVRHRDIHL----------------------------------LTTGRYTYTNDQRF 79 (236)
Q Consensus 34 ~~~~L~i~~~~~~D~G~Y~C~v~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~ 79 (236)
.+-+|+|.+++.+|+|.|+|.+.+.++..... .+-.++.|.+++..
T Consensus 292 ~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~p 371 (1051)
T KOG3513|consen 292 YGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEP 371 (1051)
T ss_pred cccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCee
Confidence 35699999999999999999999876542110 02235777777644
Q ss_pred EEEcCC----CCCcEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEEEEEEeeCCcccccCCCcccccCC--CcEEEe
Q psy10361 80 RVINNP----TSDDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVVVLVINDGKYLLVPEPETDIIGG--PEVFIE 152 (236)
Q Consensus 80 ~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 152 (236)
.....+ .-..+.|.|.+++..|+|.|+|.|.|..+.. +.+.|+|+. . .+.+...+ ....+.
T Consensus 372 l~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a----------~--~P~f~~~p~~~~~~a~ 439 (1051)
T KOG3513|consen 372 LEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLA----------S--APVFPLNPVERKVMAV 439 (1051)
T ss_pred cCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEc----------c--CCCCCCCccceEEEEE
Confidence 332111 1235689999999999999999999998765 788999982 1 11122222 234667
Q ss_pred cCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC---ce
Q psy10361 153 NGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA---KS 229 (236)
Q Consensus 153 ~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g---~~ 229 (236)
.|.++.+.|...+.|+| .+.|.+++..+. ..+++.+. +++ +|.|.+++.+|+|.|+|.|.|.+| ..
T Consensus 440 ~g~~v~i~C~~~asP~p--~~~W~k~~~~~~---~~~r~~i~-edG-----tL~I~n~t~~DaG~YtC~A~N~~G~a~~~ 508 (1051)
T KOG3513|consen 440 VGGTVTIDCKPFASPKP--KVSWLKGGEKLL---QSGRIRIL-EDG-----TLEISNVTRSDAGKYTCVAENKLGKAEST 508 (1051)
T ss_pred eCCeEEEeeccCCCCcc--eEEEEcCCcccc---cCceEEEC-CCC-----cEEecccCcccCcEEEEEEEcccCccceE
Confidence 89999999999999665 999999988442 23455544 444 799999999999999999999998 45
Q ss_pred EEEEEcC
Q psy10361 230 VMVNVLN 236 (236)
Q Consensus 230 ~~~~v~~ 236 (236)
+.|.|.|
T Consensus 509 ~~L~Vkd 515 (1051)
T KOG3513|consen 509 GNLIVKD 515 (1051)
T ss_pred EEEEEec
Confidence 5666654
No 2
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.89 E-value=8.6e-21 Score=147.85 Aligned_cols=133 Identities=20% Similarity=0.297 Sum_probs=90.4
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-----eEEEEEEEEEEeeCCcccccCCCcccccCCCcEEEecCCeEEEEeEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-----HYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVV 163 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-----~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~ 163 (236)
+..|.|.+++.+|+|.|+|.+.+..+.. ..+.|.|. .+..++.+..+....+..|+.+.|.|.+
T Consensus 176 ~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~-----------~~~~pp~~~~p~~~~~~~G~~v~L~C~a 244 (326)
T PHA02785 176 PGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVR-----------DRIIPPTMQLPEGVVTSIGSNLTIACRV 244 (326)
T ss_pred CCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEe-----------ccCCCceecCCCcEEecCCCcEEEEEEE
Confidence 4579999999999999999999865432 22334443 1122233444566777889999999999
Q ss_pred eeCCCC-CCeEEEeecCeEEeeecC--CCceEEEee-----cCcceEEEEEEcccCCCCCeEEEEEeCCCCCceEEE
Q psy10361 164 RFSPEP-PAYIFWNHNEAIISYDSQ--RGGVNVITE-----KGETTVSYLLIQKARPSDNGKYQCNPANSQAKSVMV 232 (236)
Q Consensus 164 ~~~p~p-~~~v~W~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~ 232 (236)
.+.|.| .+.+.|+++|..+..... .+++..... ........|.|.+++.+|.|.|+|.|.|..|..+..
T Consensus 245 ~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~~~ 321 (326)
T PHA02785 245 SLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISKTV 321 (326)
T ss_pred ECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceEee
Confidence 988643 248999999987743211 112222111 001124579999999999999999999999755544
No 3
>KOG3513|consensus
Probab=99.89 E-value=1.3e-21 Score=165.64 Aligned_cols=180 Identities=22% Similarity=0.321 Sum_probs=130.1
Q ss_pred ceEEEEcCCCCCCCeeEEEEEEEEecce------eEE---------------------------------------ecce
Q psy10361 35 DWTLQLKYPQHKDTGIYECQVSFVRHRD------IHL---------------------------------------LTTG 69 (236)
Q Consensus 35 ~~~L~i~~~~~~D~G~Y~C~v~~~~~~~------~~~---------------------------------------~~~~ 69 (236)
+..|.|.+|..+|.+.|.|.+....... ..+ .|..
T Consensus 192 ~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P 271 (1051)
T KOG3513|consen 192 NGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTP 271 (1051)
T ss_pred cceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCC
Confidence 5699999999999999999887521100 000 0223
Q ss_pred eeEEecCCc-EEE-EcCCCCCcEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEEEEEEeeCCcccccCCCcccccCC
Q psy10361 70 RYTYTNDQR-FRV-INNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVVVLVINDGKYLLVPEPETDIIGG 146 (236)
Q Consensus 70 ~~~~~~~~~-~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~ 146 (236)
.+.|.+.+. ... .-........|.|.+++.+|.|.|.|.|.|..+.. ....+.|. ..+..+..+
T Consensus 272 ~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~-------------a~P~w~~~~ 338 (1051)
T KOG3513|consen 272 QIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVY-------------APPYWLQKP 338 (1051)
T ss_pred cEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEe-------------cCchhhccc
Confidence 455554322 110 00011245689999999999999999999998754 67777877 333455567
Q ss_pred CcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 147 ~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
....+..|+++.|.|.+.|.|.| .+.|++++.++.......+.. ..++ .|.|+++...|+|+|.|.|.|.+
T Consensus 339 ~d~~~~~gs~v~~eC~a~g~P~p--~v~WlkNg~pl~~~~r~~~~~--i~~g-----~L~is~v~~~dsg~YQC~A~Nk~ 409 (1051)
T KOG3513|consen 339 QDTEADTGSNVTLECKASGKPNP--TVKWLKNGEPLEPAERDPRYK--IDDG-----TLIISNVQESDSGVYQCIAENKY 409 (1051)
T ss_pred ceeEecCCCCeEEEEEecCCCCC--ceEEeeCCeecCccCCCcceE--EeCC-----EEEEEecccccCeEEEeeeeccc
Confidence 78889999999999999999554 999999999986533322233 2333 79999999999999999999999
Q ss_pred C---ceEEEEEcC
Q psy10361 227 A---KSVMVNVLN 236 (236)
Q Consensus 227 g---~~~~~~v~~ 236 (236)
| +++.|.|++
T Consensus 410 G~i~anA~L~V~a 422 (1051)
T KOG3513|consen 410 GTIYANAELKVLA 422 (1051)
T ss_pred ceEeeeeEEEEEc
Confidence 9 667777763
No 4
>KOG4221|consensus
Probab=99.79 E-value=1.3e-17 Score=141.73 Aligned_cols=179 Identities=27% Similarity=0.377 Sum_probs=124.2
Q ss_pred ceEEEEcCCCC-----CCCeeEEEEEEEEe-----cce-----------------eEE--------------ecceeeEE
Q psy10361 35 DWTLQLKYPQH-----KDTGIYECQVSFVR-----HRD-----------------IHL--------------LTTGRYTY 73 (236)
Q Consensus 35 ~~~L~i~~~~~-----~D~G~Y~C~v~~~~-----~~~-----------------~~~--------------~~~~~~~~ 73 (236)
|.+|.|.++.. -|.|.|+|.+.-.. .+. ..+ .+...+.|
T Consensus 95 NgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w 174 (1381)
T KOG4221|consen 95 NGSLYISSVLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMW 174 (1381)
T ss_pred CCceeEeeecccccccccCceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCccCceeEE
Confidence 67999999888 89999999876321 000 000 12234556
Q ss_pred ecCC-------cEEEEcCCCCCcEEEEEcCCCCCCCEEEEEEeecCCC--ceeEEEEEEEEEEeeCCcccccCCCccccc
Q psy10361 74 TNDQ-------RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPH--QAHYIYLTVVVLVINDGKYLLVPEPETDII 144 (236)
Q Consensus 74 ~~~~-------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~ 144 (236)
.++. |+... .++.|.|.++++.|.|.|.|.+.+... .+..+.|+|. +.+... ....++.
T Consensus 175 ~kn~~pl~~~~r~i~l-----psG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~-----s~~~~~--~~~~fl~ 242 (1381)
T KOG4221|consen 175 LKNDQPLPLDSRVIVL-----PSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVL-----SDPGAL--NKLVFLD 242 (1381)
T ss_pred ecccccccCCCcEEEc-----CCCcEEecccccCCCceEEEEEecCCcCCccceeEEEec-----CCcccc--cceeeec
Confidence 5543 33333 466899999999999999999988653 3477788887 111111 1122345
Q ss_pred CCCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCC
Q psy10361 145 GGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPAN 224 (236)
Q Consensus 145 ~~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n 224 (236)
.+....+..|+++.|.|-+.+.|+ +.|.|.+++..+..++ .++.+... +.|.|++++..|+|.|+|+|.|
T Consensus 243 ~p~~~~v~~g~~v~leCvvs~~p~--p~v~Wlrng~~i~~ds--~rivl~g~------~slliS~a~~~dSg~YtC~Atn 312 (1381)
T KOG4221|consen 243 EPSNAVVVEGDDVVLECVVSGVPK--PSVKWLRNGEKISVDS--YRIVLVGG------SSLLISNATDDDSGKYTCRATN 312 (1381)
T ss_pred CCCccccccCCcEEEEEEecCCCC--CceEEeeCCeeeeecc--eEEEEecc------cceEEeccccccCceEEEEecC
Confidence 566778899999999999999955 4999999999887643 33443322 3799999999999999999999
Q ss_pred CC--C-ceEEEEEc
Q psy10361 225 SQ--A-KSVMVNVL 235 (236)
Q Consensus 225 ~~--g-~~~~~~v~ 235 (236)
.. + +++.|.|+
T Consensus 313 ~~D~idasaev~V~ 326 (1381)
T KOG4221|consen 313 TNDSIDASAEVTVL 326 (1381)
T ss_pred CCcccccceEEEEE
Confidence 43 2 55566554
No 5
>KOG4194|consensus
Probab=99.78 E-value=6.7e-18 Score=134.92 Aligned_cols=167 Identities=22% Similarity=0.330 Sum_probs=120.6
Q ss_pred ceEEEEcCCCCCCCeeEEEEEEEEeccee---------------------EEe--------------cceeeEEecCC--
Q psy10361 35 DWTLQLKYPQHKDTGIYECQVSFVRHRDI---------------------HLL--------------TTGRYTYTNDQ-- 77 (236)
Q Consensus 35 ~~~L~i~~~~~~D~G~Y~C~v~~~~~~~~---------------------~~~--------------~~~~~~~~~~~-- 77 (236)
..-|.+.||...|.|.|.|.+.+..+++. .+. |.+.+.|.+++
T Consensus 573 ~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggt 652 (873)
T KOG4194|consen 573 TAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGT 652 (873)
T ss_pred hheeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCC
Confidence 35799999999999999999998655431 000 12234554443
Q ss_pred --------cEEEEcCCCCCcEEEEEcCCCCCCCEEEEEEeecCCCc-eeEEEEEEEEEEeeCCcccccCCCcccccCCCc
Q psy10361 78 --------RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQ-AHYIYLTVVVLVINDGKYLLVPEPETDIIGGPE 148 (236)
Q Consensus 78 --------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (236)
|..+.+ .+..+-|.+++.+|+|.|+|.|.|..+. +..+.|.|. +.+.+..+...
T Consensus 653 dFPAA~eRRl~Vmp----edd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~-------------e~p~f~~PL~~ 715 (873)
T KOG4194|consen 653 DFPAARERRLHVMP----EDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVL-------------ETPSFSIPLED 715 (873)
T ss_pred CCchhhhheeeecC----CCCEEEEecccccccceeEEeeeccccceeeceEEEEe-------------cCCcccccccc
Confidence 222222 3557889999999999999999997754 577888888 22223333456
Q ss_pred EEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 149 VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 149 ~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
..+..|+++.|.|.+.+.|. .+...|+++..++... .++...+.+. -|.+.+...+|+|.|+|..+|..|
T Consensus 716 ~~V~~get~vlqC~a~~~~a-~pr~~W~k~d~pil~t---~rh~f~d~dQ-----llvv~~~~~~daG~yTcem~~~~~ 785 (873)
T KOG4194|consen 716 QLVVVGETLVLQCLAEGAPA-DPRLEWFKEDKPILIT---ERHTFPDGDQ-----LLVVKENLVEDAGIYTCEMSNTLG 785 (873)
T ss_pred eEEEecceEEEEEecCCCCC-CccccccCCCCceEEe---ecccCCCCCe-----EEEEEehhhhhcceEEEEEEeecc
Confidence 78889999999999998852 3699999999888652 1233333332 578888999999999999999987
No 6
>KOG4221|consensus
Probab=99.76 E-value=1.5e-17 Score=141.41 Aligned_cols=180 Identities=22% Similarity=0.285 Sum_probs=127.2
Q ss_pred ecCCcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEEecc-----------------------------------ee
Q psy10361 19 YTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRHR-----------------------------------DI 63 (236)
Q Consensus 19 ~~~~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~~~~-----------------------------------~~ 63 (236)
...+.|+.+.. +..|+|.+++++|.|.|+|.+..-..+ ++
T Consensus 181 l~~~~r~i~lp-----sG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v 255 (1381)
T KOG4221|consen 181 LPLDSRVIVLP-----SGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDV 255 (1381)
T ss_pred ccCCCcEEEcC-----CCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcE
Confidence 44556777776 459999999999999999988752210 00
Q ss_pred EE------ecceeeEEecCCcEEEEcCC---CCCcEEEEEcCCCCCCCEEEEEEeecCC-CceeEEEEEEEEEEeeCCcc
Q psy10361 64 HL------LTTGRYTYTNDQRFRVINNP---TSDDWTLQLKYPQHKDTGIYECQVSTTP-HQAHYIYLTVVVLVINDGKY 133 (236)
Q Consensus 64 ~~------~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~ 133 (236)
.+ ++...+.|..+++....+.. ......|.|.+++..|+|.|+|.|.|.. ...+.+.|+|+
T Consensus 256 ~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~--------- 326 (1381)
T KOG4221|consen 256 VLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVL--------- 326 (1381)
T ss_pred EEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEE---------
Confidence 00 12345777777654433210 1245679999999999999999999854 34466788888
Q ss_pred cccCCCcccccCCCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCC
Q psy10361 134 LLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213 (236)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 213 (236)
.++.++..+......++.+++|.|.+.+.| .+.+.|+++|..+.. .....+ ..++ .|.|..+-..
T Consensus 327 ----a~P~~~~~p~~l~A~e~~die~ec~~~g~p--~p~v~w~kNgd~~ip---sdy~ki-~~~~-----~lrIlgi~~s 391 (1381)
T KOG4221|consen 327 ----APPGFTKAPTTLVAHESMDIEFECPVSGKP--IPTVRWYKNGDRIIP---SDYFKI-VGGG-----NLRILGIVKS 391 (1381)
T ss_pred ----cCCCCCCCCcceeeeeccceeEeCCCCCCC--cceEEEEecCcccCc---ccceEe-cCCC-----CcEEEEEecc
Confidence 233344556677778899999999999984 459999999987743 122222 2222 3777788889
Q ss_pred CCeEEEEEeCCCCC
Q psy10361 214 DNGKYQCNPANSQA 227 (236)
Q Consensus 214 d~G~y~C~a~n~~g 227 (236)
|.|.|.|.++|..|
T Consensus 392 deg~yQcvaen~~G 405 (1381)
T KOG4221|consen 392 DEGFYQCVAENDAG 405 (1381)
T ss_pred cchhhhhhhccCcc
Confidence 99999999999998
No 7
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.73 E-value=7.9e-16 Score=113.37 Aligned_cols=111 Identities=23% Similarity=0.307 Sum_probs=82.1
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCc-eeEEEEEEEEEEeeCCcccccCCCcccccCCCcEEEecCCeEEEEeEEeeCC
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQ-AHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSP 167 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p 167 (236)
+..|.|.+++.+|+|.|+|.+.|..+. ...+.|.|. .+ .....+.+|+++.|.|.+.+.+
T Consensus 97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~-------------~~------~~~~~~~~G~~v~L~C~~~~~~ 157 (227)
T PHA02826 97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFD-------------SG------TINYQFNSGKDSKLHCYGTDGI 157 (227)
T ss_pred CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEe-------------cC------CccceEecCCCEEEEeeCCCCc
Confidence 568999999999999999999996644 345555554 11 1134567899999999986321
Q ss_pred ---CCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 168 ---EPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 168 ---~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
.|.+.+.|++++..+... .+..+.... .+|.|.++..+|+|.|+|.|....
T Consensus 158 ~~~~p~p~I~WyKng~~l~~~---~r~~~~~~~-----~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 158 SSTFKDYTLTWYKNGNIVLYT---DRIQLRNNN-----STLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred cccCCCceEEEEECCEECCCC---CCEEEeCCC-----CEEEECcCCHHhCEEEEEEEEEeE
Confidence 245699999999987532 233333222 279999999999999999999875
No 8
>KOG4194|consensus
Probab=99.71 E-value=1.4e-16 Score=127.53 Aligned_cols=126 Identities=21% Similarity=0.361 Sum_probs=103.1
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce--eEEEEEEEEEEeeCCcccccCCCcccccCCCcEEEecCCeEEEEeEEeeC
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA--HYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFS 166 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 166 (236)
...|.+.+|...|.|.|+|.+.|.++.. ..+.++|. ..+.+...|.++.+..|..+.|.|.+.|.
T Consensus 573 ~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~-------------~~PsFtktP~dltl~tg~mArl~CaAtG~ 639 (873)
T KOG4194|consen 573 TAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVN-------------QAPSFTKTPEDLTLRTGQMARLECAATGH 639 (873)
T ss_pred hheeeeeeeecccCceEEEEEecccCcchhheeEEEee-------------ccCccccCcccceeecccceeeeeeccCC
Confidence 4579999999999999999999988764 78888888 34446667888999999999999999999
Q ss_pred CCCCCeEEEeecCeE-EeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC---ceEEEEEc
Q psy10361 167 PEPPAYIFWNHNEAI-ISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA---KSVMVNVL 235 (236)
Q Consensus 167 p~p~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g---~~~~~~v~ 235 (236)
|. |++.|.++|.. .+...+ .+..+..++. .+.|.+++.+|.|.|+|.|.|.+| ..+++.|+
T Consensus 640 P~--PeIawqkdggtdFPAA~e-RRl~Vmpedd-----~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~ 704 (873)
T KOG4194|consen 640 PR--PEIAWQKDGGTDFPAARE-RRLHVMPEDD-----VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVL 704 (873)
T ss_pred CC--cceeehhcCCCCCchhhh-heeeecCCCC-----EEEEecccccccceeEEeeeccccceeeceEEEEe
Confidence 55 59999998765 433233 3666666665 799999999999999999999998 55566665
No 9
>KOG4222|consensus
Probab=99.66 E-value=1.9e-15 Score=128.25 Aligned_cols=169 Identities=22% Similarity=0.353 Sum_probs=119.4
Q ss_pred ceEEEEcCCCCCCCeeEEEEEEEEecce---------------------eEEe--------------cceeeEEecCC--
Q psy10361 35 DWTLQLKYPQHKDTGIYECQVSFVRHRD---------------------IHLL--------------TTGRYTYTNDQ-- 77 (236)
Q Consensus 35 ~~~L~i~~~~~~D~G~Y~C~v~~~~~~~---------------------~~~~--------------~~~~~~~~~~~-- 77 (236)
...|.|.+++..|+|.|.|...+..+.. ..++ +...++|..+.
T Consensus 186 gG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~ 265 (1281)
T KOG4222|consen 186 GGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPS 265 (1281)
T ss_pred CCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCC
Confidence 3499999999999999999887643221 1111 12345665432
Q ss_pred ----cEEEEcCCCCCcEEEEEcCCCCCCCEEEEEEeecCCC-ceeEEEEEEEEEEeeCCcccccCCCcccccCCCcEEEe
Q psy10361 78 ----RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPH-QAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIE 152 (236)
Q Consensus 78 ----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (236)
|+.+.. .+.+|.|.+++..|+|.|.|.+.+..+ ......++|+ .++-+...+....+.
T Consensus 266 ~P~~ry~i~~----d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~-------------apP~f~kkp~dq~v~ 328 (1281)
T KOG4222|consen 266 LPRSRYSILD----DTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQ-------------APPSFGKKPRDQKVA 328 (1281)
T ss_pred CCccceeeee----ccccccccccCCCcccceeeeccccccccccccceEEe-------------cCcccccccCccccc
Confidence 333332 246899999999999999999999764 4577788888 232333344556777
Q ss_pred cCCeEEEEeEEeeCCCCCCeEEEeecCeEEeee-----cCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 153 NGSTINLTCVVRFSPEPPAYIFWNHNEAIISYD-----SQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 153 ~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
.|..+.|.|.+.+. |++.++|.+.+..-... ...++..+.... +|+|.+++..|.|.|.|...+.+|
T Consensus 329 lg~~vt~pc~~~gn--P~PavfW~keg~q~llf~~~p~~~~~r~svs~~g------~L~it~v~~~d~g~Yvcq~~~~~~ 400 (1281)
T KOG4222|consen 329 LGGTVTFPCETLGN--PPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTG------TLTITNVRQSDEGYYVCQTQTSAG 400 (1281)
T ss_pred cCceEEeeeecCCC--CCcceEEeccCcceecccCCCCCcCccceecCCC------CcccccccccccceEeeccccccc
Confidence 89999999999999 55699999987543221 222233332222 799999999999999999888877
Q ss_pred c
Q psy10361 228 K 228 (236)
Q Consensus 228 ~ 228 (236)
.
T Consensus 401 s 401 (1281)
T KOG4222|consen 401 S 401 (1281)
T ss_pred c
Confidence 4
No 10
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.61 E-value=2.1e-14 Score=92.24 Aligned_cols=83 Identities=19% Similarity=0.317 Sum_probs=64.6
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCC
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANS 225 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~ 225 (236)
+....+..|+.+.|.|.+.|. |++.+.|++++..+... .++...... ..+.|+|.++..+|+|.|+|.|.|.
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~--p~p~v~W~kdg~~l~~~---~~~~~~~~~---~~s~L~I~~~~~~D~G~Ytc~a~N~ 78 (98)
T cd05762 7 PEDMKVRAGESVELFCKVTGT--QPITCTWMKFRKQIQEG---EGIKIENTE---NSSKLTITEGQQEHCGCYTLEVENK 78 (98)
T ss_pred CcCEEEECCCEEEEEEEEccc--CCCceEEEECCEEecCC---CcEEEEecC---CeeEEEECCCChhhCEEEEEEEEcC
Confidence 456788999999999999998 45699999999988532 233333222 2358999999999999999999999
Q ss_pred CC---ceEEEEEcC
Q psy10361 226 QA---KSVMVNVLN 236 (236)
Q Consensus 226 ~g---~~~~~~v~~ 236 (236)
+| .++.|.|++
T Consensus 79 ~G~~~~~~~l~V~~ 92 (98)
T cd05762 79 LGSRQAQVNLTVVD 92 (98)
T ss_pred CCceeEEEEEEEec
Confidence 99 455666653
No 11
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.57 E-value=5.7e-14 Score=89.43 Aligned_cols=76 Identities=30% Similarity=0.414 Sum_probs=58.6
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCC
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANS 225 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~ 225 (236)
+..+.+.+|+++.|.|.+.|.| .+.+.|++++..+... .+.......+ ...+|.|.++..+|+|.|+|.|.|.
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P--~p~v~W~k~g~~l~~~---~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~ 80 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDP--DPEVSWLKNDQALALS---DHYNVKVEQG--KYASLTIKGVSSEDSGKYGIVVKNK 80 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecC--CCeEEEEECCEECccC---CCEEEEEcCC--CEEEEEEccCChhhCEEEEEEEEEC
Confidence 3456888999999999999995 4599999999887532 2333322222 2357999999999999999999999
Q ss_pred CCc
Q psy10361 226 QAK 228 (236)
Q Consensus 226 ~g~ 228 (236)
.|.
T Consensus 81 ~G~ 83 (92)
T cd05737 81 YGG 83 (92)
T ss_pred CCc
Confidence 983
No 12
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.56 E-value=4.2e-14 Score=88.63 Aligned_cols=74 Identities=20% Similarity=0.385 Sum_probs=58.5
Q ss_pred cEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 148 EVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 148 ~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
.+.+..|+.+.|.|.+.|.| .|.+.|++++.++.... .++...... ..+.|.|.++..+|+|.|+|.|.|..|
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P--~P~v~W~k~~~~i~~~~--~r~~~~~~~---~~~~L~I~~~~~~D~G~Y~c~a~N~~G 76 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEP--APTVTWSRGDKAFTETE--GRVRVESYK---DLSSFVIEGAEREDEGVYTITVTNPVG 76 (86)
T ss_pred EEEEEcCCEEEEEeeEeecC--CCeEEEEECCEECccCC--CeEEEEEcC---CeEEEEECCCccCcCEEEEEEEEeCCC
Confidence 46778999999999999994 45999999998885421 234333222 245899999999999999999999999
Q ss_pred c
Q psy10361 228 K 228 (236)
Q Consensus 228 ~ 228 (236)
.
T Consensus 77 ~ 77 (86)
T cd05894 77 E 77 (86)
T ss_pred c
Confidence 3
No 13
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.55 E-value=1.1e-13 Score=89.10 Aligned_cols=76 Identities=26% Similarity=0.395 Sum_probs=58.6
Q ss_pred CcEEEecCCeEEEEeEEee-CCCCCCeEEEeecCeEEeeecCCCceEEEeec--CcceEEEEEEcccCCCCCeEEEEEeC
Q psy10361 147 PEVFIENGSTINLTCVVRF-SPEPPAYIFWNHNEAIISYDSQRGGVNVITEK--GETTVSYLLIQKARPSDNGKYQCNPA 223 (236)
Q Consensus 147 ~~~~~~~g~~~~l~C~~~~-~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~y~C~a~ 223 (236)
..+.+..|+++.|.|.+.| . |++.+.|++++.++... ........+ .....+.|.|..+..+|+|.|+|.|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~--P~p~v~W~Kdg~~i~~~---~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~ 85 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYP--PPPHINWTYDNRTLTNK---LTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLAS 85 (101)
T ss_pred ceEEEECCCCEEEEEEEEecC--CCCccEEEeCCeeCCCC---cceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEE
Confidence 4678889999999999999 6 55699999999988531 122212111 11234689999999999999999999
Q ss_pred CCCC
Q psy10361 224 NSQA 227 (236)
Q Consensus 224 n~~g 227 (236)
|..|
T Consensus 86 N~~G 89 (101)
T cd04975 86 NSDA 89 (101)
T ss_pred CCCc
Confidence 9999
No 14
>KOG4222|consensus
Probab=99.55 E-value=6e-14 Score=119.31 Aligned_cols=134 Identities=17% Similarity=0.301 Sum_probs=102.6
Q ss_pred eeEEecCCcEEEEcC----CCCCcEEEEEcCCCCCCCEEEEEEeecCCCc--eeEEEEEEEEEEeeCCcccccCCCcccc
Q psy10361 70 RYTYTNDQRFRVINN----PTSDDWTLQLKYPQHKDTGIYECQVSTTPHQ--AHYIYLTVVVLVINDGKYLLVPEPETDI 143 (236)
Q Consensus 70 ~~~~~~~~~~~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~ 143 (236)
.+.|.+++....... .....+.|.|.++...|+|.|.|.+.|..+. +...+|+|+ +.+.+.
T Consensus 163 tvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~-------------e~P~f~ 229 (1281)
T KOG4222|consen 163 TVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ-------------EKPWFW 229 (1281)
T ss_pred cceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeec-------------cCCccc
Confidence 466666664443111 0124568999999999999999999998753 477888888 555566
Q ss_pred cCCCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeC
Q psy10361 144 IGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPA 223 (236)
Q Consensus 144 ~~~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~ 223 (236)
..+..+.+..|..+.++|.+.|.| .+.+.|.+.+..+. ..+..+..+.. +|.|.++...|.|.|.|.+.
T Consensus 230 ~rp~~~~v~~g~~~~f~c~v~GdP--~P~Vrwkk~~~~~P----~~ry~i~~d~q-----tl~i~r~tp~deg~y~C~a~ 298 (1281)
T KOG4222|consen 230 KRPKDLAVLVGAAAEFDCRVGGDP--QPTVRWKKDDPSLP----RSRYSILDDTQ-----TLRIDRVTPTDEGTYVCPAE 298 (1281)
T ss_pred cccccceeecccccccccccCCCC--CCceeeeccCCCCC----ccceeeeeccc-----cccccccCCCcccceeeecc
Confidence 667788899999999999999984 45999999765543 34555555533 79999999999999999999
Q ss_pred CCCC
Q psy10361 224 NSQA 227 (236)
Q Consensus 224 n~~g 227 (236)
|.+|
T Consensus 299 n~vG 302 (1281)
T KOG4222|consen 299 NLVG 302 (1281)
T ss_pred cccc
Confidence 9997
No 15
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.54 E-value=9e-14 Score=87.61 Aligned_cols=71 Identities=21% Similarity=0.405 Sum_probs=55.7
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCC
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANS 225 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~ 225 (236)
+.+..+.+|+++.|.|.+.|.|. +.+.|++++..+.. ..++ ...+ ..|.|.++..+|.|.|+|.|.|.
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~--P~v~W~k~~~~~~~---~~~~--~~~~-----~~L~I~~v~~~D~G~Y~C~A~N~ 75 (88)
T cd05851 8 FKDTYALKGQNVTLECFALGNPV--PVIRWRKILEPMPA---TAEI--SMSG-----AVLKIFNIQPEDEGTYECEAENI 75 (88)
T ss_pred cccEEEeCCCcEEEEEEecccCC--CEEEEEECCcCCCC---CCEE--ecCC-----CEEEECcCChhhCEEEEEEEEcC
Confidence 44677889999999999999954 59999999876532 1111 1222 27999999999999999999999
Q ss_pred CCc
Q psy10361 226 QAK 228 (236)
Q Consensus 226 ~g~ 228 (236)
.|.
T Consensus 76 ~G~ 78 (88)
T cd05851 76 KGK 78 (88)
T ss_pred CCc
Confidence 993
No 16
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.54 E-value=4.4e-14 Score=86.16 Aligned_cols=65 Identities=25% Similarity=0.450 Sum_probs=51.6
Q ss_pred cCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCc
Q psy10361 153 NGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAK 228 (236)
Q Consensus 153 ~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 228 (236)
+|+++.|.|.+.|.| .|.+.|++++..+... .+... ... .+|.|.++..+|.|.|+|.|.|.+|.
T Consensus 1 eG~~v~l~C~~~g~P--~p~i~W~k~g~~~~~~---~~~~~-~~~-----~~L~I~~v~~~D~G~Y~C~A~N~~G~ 65 (74)
T cd05745 1 EGQTVDFLCEAQGYP--QPVIAWTKGGSQLSVD---RRHLV-LSS-----GTLRISRVALHDQGQYECQAVNIVGS 65 (74)
T ss_pred CCCeEEEEeECCEec--CCEEEEEECCEECCCC---CCeEE-ccC-----CeEEEeeCCHHhCEEEEEEEEeCCCc
Confidence 589999999999995 4599999999877431 12222 222 27999999999999999999999993
No 17
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.54 E-value=7.1e-14 Score=84.68 Aligned_cols=64 Identities=20% Similarity=0.492 Sum_probs=51.2
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCc
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAK 228 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 228 (236)
|+++.|.|.+.|.| .+.+.|++++..+.. ..++.+. .++ +|.|.++..+|.|.|+|.|.|..|.
T Consensus 1 G~~~~l~C~~~g~P--~p~v~W~k~~~~l~~---~~r~~~~-~~g-----~L~I~~v~~~D~G~Y~C~A~N~~G~ 64 (73)
T cd05852 1 GGRVIIECKPKAAP--KPKFSWSKGTELLVN---NSRISIW-DDG-----SLEILNITKLDEGSYTCFAENNRGK 64 (73)
T ss_pred CCeEEEEEecceeC--CCEEEEEeCCEeccc---CCCEEEc-CCC-----EEEECcCChhHCEEEEEEEECCCCc
Confidence 67899999999985 459999999887642 2344432 232 7999999999999999999999993
No 18
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.53 E-value=1.1e-13 Score=84.13 Aligned_cols=66 Identities=23% Similarity=0.536 Sum_probs=50.7
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCc
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAK 228 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 228 (236)
+.|.|.+.|.|. |.+.|++++..+.... .++.+...+. ...+|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 v~l~C~v~G~P~--P~i~W~k~~~~i~~~~--~r~~~~~~~~--g~~~L~I~~~~~~D~G~Y~C~A~N~~G~ 66 (75)
T cd05892 1 VKLECQISAIPP--PKIFWKRNNEMVQYNT--DRISLYQDNS--GRVTLLIKNVNKKDAGWYTVSAVNEAGV 66 (75)
T ss_pred CEEEEEEEecCC--CeEEEEECCEECcCCC--CeEEEEEcCC--CcEEEEECCCChhhCEEEEEEEEcCcCe
Confidence 479999999954 5999999998875322 2444433322 2247999999999999999999999994
No 19
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.53 E-value=1.1e-13 Score=84.76 Aligned_cols=72 Identities=31% Similarity=0.491 Sum_probs=54.3
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC---ceE
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA---KSV 230 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g---~~~ 230 (236)
|+.+.|.|.+.|.| .|.+.|++++..+.......+.. ...+ .|.|.++..+|+|.|+|.|.|..| ..+
T Consensus 1 G~~v~l~C~~~G~P--~p~i~W~k~g~~i~~~~~~~~~~--~~~~-----~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 71 (76)
T cd05867 1 GETARLDCQVEGIP--TPNITWSINGAPIEGTDPDPRRH--VSSG-----ALILTDVQPSDTAVYQCEARNRHGNLLANA 71 (76)
T ss_pred CCeEEEEEEeeEeC--CCeEEEEECCEECCCCCCCceEE--eeCC-----EEEECCCChhhCEEEEEEEECCCCeEEEEE
Confidence 68899999999995 45999999998775422111222 2232 799999999999999999999999 344
Q ss_pred EEEE
Q psy10361 231 MVNV 234 (236)
Q Consensus 231 ~~~v 234 (236)
.|.|
T Consensus 72 ~l~V 75 (76)
T cd05867 72 HVHV 75 (76)
T ss_pred EEEE
Confidence 5555
No 20
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.53 E-value=1.4e-13 Score=84.27 Aligned_cols=73 Identities=25% Similarity=0.400 Sum_probs=54.5
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC---ceE
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA---KSV 230 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g---~~~ 230 (236)
|+++.|.|.+.|.| .|.+.|++++..+.... ...... .+. ..|.|.++..+|.|.|+|.|.|..| .++
T Consensus 1 g~~~~l~C~a~G~P--~P~i~W~k~g~~i~~~~-~~~~~~-~~~-----~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~ 71 (76)
T cd05868 1 GEDGTLICRANGNP--KPSISWLTNGVPIEIAP-TDPSRK-VDG-----DTIIFSKVQERSSAVYQCNASNEYGYLLANA 71 (76)
T ss_pred CCCEEEEEEeeEeC--CCeEEEEECCEEccccC-CCceEE-ecC-----CEEEECCCCHhhCEEEEEEEEcCCCEEEEEE
Confidence 67899999999995 45999999998875321 111111 122 2688999999999999999999999 455
Q ss_pred EEEEc
Q psy10361 231 MVNVL 235 (236)
Q Consensus 231 ~~~v~ 235 (236)
.|.|+
T Consensus 72 ~l~v~ 76 (76)
T cd05868 72 FVNVL 76 (76)
T ss_pred EEEeC
Confidence 56654
No 21
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.52 E-value=3e-13 Score=84.57 Aligned_cols=79 Identities=23% Similarity=0.377 Sum_probs=56.1
Q ss_pred CeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC---ceEE
Q psy10361 155 STINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA---KSVM 231 (236)
Q Consensus 155 ~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g---~~~~ 231 (236)
+++.|.|.+.|.|.|...+.|++++..+.......+....... ...++|.|.+++..|+|.|+|.|.|.+| .++.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~ 78 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVK--ETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASAT 78 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEec--ceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEE
Confidence 4689999999998776679999999887542222222111110 1224899999999999999999999998 4445
Q ss_pred EEEc
Q psy10361 232 VNVL 235 (236)
Q Consensus 232 ~~v~ 235 (236)
|.|.
T Consensus 79 L~V~ 82 (85)
T cd05854 79 LVVR 82 (85)
T ss_pred EEEE
Confidence 5553
No 22
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.52 E-value=3.5e-13 Score=84.90 Aligned_cols=78 Identities=24% Similarity=0.422 Sum_probs=58.1
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEe-ecCcceEEEEEEcccCCCCCeEEEEEeCCCCC---ce
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVIT-EKGETTVSYLLIQKARPSDNGKYQCNPANSQA---KS 229 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g---~~ 229 (236)
|+.+.|.|.+.|. |++.+.|++++..+... ..+..... ..+....+.|.|.++..+|+|.|+|.|.|..| ..
T Consensus 1 g~~~~l~C~~~g~--p~~~i~W~k~~~~i~~~--~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~ 76 (88)
T cd05735 1 GQKKEMSCTAHGE--KPIIVRWEKEDRIINPE--MSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGI 76 (88)
T ss_pred CCeEEEEEEEECC--CCCEEEEeeCCEECCCC--CCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEE
Confidence 6889999999998 55699999999876432 12333222 22334557899999999999999999999999 44
Q ss_pred EEEEEc
Q psy10361 230 VMVNVL 235 (236)
Q Consensus 230 ~~~~v~ 235 (236)
+.|.|.
T Consensus 77 ~~L~V~ 82 (88)
T cd05735 77 IQLTVQ 82 (88)
T ss_pred EEEEEe
Confidence 455554
No 23
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.51 E-value=5.8e-13 Score=91.51 Aligned_cols=123 Identities=20% Similarity=0.250 Sum_probs=76.8
Q ss_pred EEEEcCCCCCCCEEEEEEeecCCCc-eeEEEEEEEEEEeeCCcccccCCCcccccCCCcEEEecCCeEEEEeEEeeCCCC
Q psy10361 91 TLQLKYPQHKDTGIYECQVSTTPHQ-AHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEP 169 (236)
Q Consensus 91 ~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p 169 (236)
+|.|.+++.+|+|.|.|.+.+..+. ...+.|.|. .| +...+. +.......|+.+.|.|.+.+.+.+
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~-----------~~-P~v~~~-~~~~~~~~~~~~~L~C~a~g~~P~ 68 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVS-----------EP-PRVRLS-LEKLVSMIEEPQTLICHIAGYYPL 68 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEe-----------cC-CceEEe-CCCceeecCCcEEEEEEECCCCCC
Confidence 5899999999999999999876543 366777776 22 222222 223333478889999999986312
Q ss_pred CCeEEEeecCeEEee-----ec-CCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 170 PAYIFWNHNEAIISY-----DS-QRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 170 ~~~v~W~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
...+.|++++..... .. .........+......+.|.+..-...+...|+|.+.+..
T Consensus 69 ~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 69 DVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred CeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 358999998754211 00 0001111112223455677776555555669999998765
No 24
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.51 E-value=6.8e-13 Score=84.47 Aligned_cols=77 Identities=23% Similarity=0.344 Sum_probs=59.8
Q ss_pred cCCCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeC
Q psy10361 144 IGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPA 223 (236)
Q Consensus 144 ~~~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~ 223 (236)
..+....+..|+.+.|.|.+.+.|. +.+.|++++..+.. . .+..+.... ..+.|.|.++..+|+|.|.|.|.
T Consensus 8 ~~p~~~~~~~G~~~~L~C~~~g~P~--p~v~W~k~g~~l~~-~--~~~~~~~~~---~~~~L~i~~~~~~D~G~Y~C~a~ 79 (92)
T cd05747 8 TKPRSLTVSEGESARFSCDVDGEPA--PTVTWMREGQIIVS-S--QRHQITSTE---YKSTFEISKVQMSDEGNYTVVVE 79 (92)
T ss_pred ccCccEEEeCCCcEEEEEEEeecCC--CEEEEEECCEECCC-C--CcEEEEEcC---CeeEEEECCCCcccCEeEEEEEE
Confidence 4456788999999999999999954 58999999987643 1 233332221 23589999999999999999999
Q ss_pred CCCCc
Q psy10361 224 NSQAK 228 (236)
Q Consensus 224 n~~g~ 228 (236)
|..|.
T Consensus 80 N~~G~ 84 (92)
T cd05747 80 NSEGK 84 (92)
T ss_pred cCCCC
Confidence 99994
No 25
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.51 E-value=4.4e-13 Score=85.21 Aligned_cols=82 Identities=33% Similarity=0.442 Sum_probs=60.8
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCC
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANS 225 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~ 225 (236)
+..+.+.+|+.+.|.|.+.+.| .+.+.|++++..+.. ..++......+ ..++|.|.+++.+|+|.|+|.|.|.
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P--~p~i~W~k~~~~~~~---~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~ 80 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNP--DPEVIWFKNDQDIEL---SEHYSVKLEQG--KYASLTIKGVTSEDSGKYSINVKNK 80 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeC--CCeEEEEECCEECCC---CCCEEEEEcCC--CEEEEEECCCChhhCEEEEEEEEeC
Confidence 3467889999999999999985 458999999987643 12233322222 2357999999999999999999999
Q ss_pred CC-ceEEEEE
Q psy10361 226 QA-KSVMVNV 234 (236)
Q Consensus 226 ~g-~~~~~~v 234 (236)
+| ..+.+.|
T Consensus 81 ~G~~~~~~~v 90 (92)
T cd05891 81 YGGETVDVTV 90 (92)
T ss_pred CCceeeEEEE
Confidence 98 3444443
No 26
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.51 E-value=2.5e-13 Score=83.39 Aligned_cols=71 Identities=21% Similarity=0.458 Sum_probs=53.0
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC-----ceEE
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA-----KSVM 231 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g-----~~~~ 231 (236)
+.|.|.+.|.| .|.+.|++++..+.... ......... ..|.|.++..+|+|.|.|.|.|.+| ..++
T Consensus 1 v~L~C~~~g~P--~p~v~W~k~g~~l~~~~--~~~~~~~~~-----~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~ 71 (77)
T cd05760 1 VTLRCHIDGHP--RPTYQWFRDGTPLSDGQ--GNYSVSSKE-----RTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFT 71 (77)
T ss_pred CEEEEEeeecC--CCcEEEEECCEECCCCC--ccEEEeCCC-----CEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEE
Confidence 47999999995 45999999998874321 222322222 2799999999999999999999998 3456
Q ss_pred EEEcC
Q psy10361 232 VNVLN 236 (236)
Q Consensus 232 ~~v~~ 236 (236)
|.|+|
T Consensus 72 l~v~d 76 (77)
T cd05760 72 LSIID 76 (77)
T ss_pred EEEec
Confidence 66765
No 27
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.50 E-value=5e-13 Score=104.51 Aligned_cols=114 Identities=20% Similarity=0.292 Sum_probs=77.8
Q ss_pred EEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEEEEEEeeCCcccccCCCcccccCCCcEEEecCCeEEEEeEE-----
Q psy10361 90 WTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVV----- 163 (236)
Q Consensus 90 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~----- 163 (236)
..|.|.++..+|+|.|+|.+.|..+.. ..+.|+|.. ..++. .........+.+|..+.|.|..
T Consensus 82 ~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~----------~~~~~-~~~~~~~~~~~~g~~~~i~C~~~~~~~ 150 (326)
T PHA02785 82 SNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVS----------VSESN-IDLISYPQIVNERSTGEMVCPNINAFI 150 (326)
T ss_pred ceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEe----------cCCCc-cceeeccceecccCcEEEECCChhhcc
Confidence 358899999999999999999987543 567777762 11110 0011223456689999999972
Q ss_pred eeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 164 RFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 164 ~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
.+. |++.+.|+++.. +. ..+.... .. ..|.|.++..+|.|.|+|.|.|..|
T Consensus 151 ~~~--~~~~i~W~k~~~-~~----~~r~~~~-~~-----~~L~i~~v~~~d~G~Y~C~~~n~~g 201 (326)
T PHA02785 151 ASN--VNADIIWSGHRR-LR----NKRLKQR-TP-----GIITIEDVRKNDAGYYTCVLKYIYG 201 (326)
T ss_pred cCC--CCceEEEccCCc-cC----CcceEec-CC-----CeEEEeecChhhCeEEEEEEEeccC
Confidence 234 556999987542 21 1222221 12 2799999999999999999999887
No 28
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.50 E-value=4.6e-13 Score=85.87 Aligned_cols=79 Identities=16% Similarity=0.302 Sum_probs=59.4
Q ss_pred cEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 148 EVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 148 ~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
...+..|+++.|.|.+.|.| .+.+.|++++..+... ..+....... +.|.|.++..+|.|.|+|.|.|..|
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P--~p~v~W~k~g~~~~~~--~~~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (95)
T cd05730 12 NATANLGQSVTLACDADGFP--EPTMTWTKDGEPIESG--EEKYSFNEDG-----SEMTILDVDKLDEAEYTCIAENKAG 82 (95)
T ss_pred ceEEeCCCCEEEEEeccEeC--CCEEEEEECCEECcCC--CCEEEEeCCC-----CEEEECCCChhhCEEEEEEEEcCCC
Confidence 45778999999999999984 4599999999877432 1222222222 3799999999999999999999999
Q ss_pred ---ceEEEEEc
Q psy10361 228 ---KSVMVNVL 235 (236)
Q Consensus 228 ---~~~~~~v~ 235 (236)
.++.|.|+
T Consensus 83 ~~~~~~~L~V~ 93 (95)
T cd05730 83 EQEAEIHLKVF 93 (95)
T ss_pred eEEEEEEEEEE
Confidence 34455553
No 29
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.50 E-value=2.5e-13 Score=82.57 Aligned_cols=64 Identities=25% Similarity=0.492 Sum_probs=51.2
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCc
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAK 228 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 228 (236)
|+++.|.|.+.+. |.+.+.|++++..+.. ..+..+. ..+ .|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~--P~p~v~W~k~~~~~~~---~~~~~~~-~~~-----~L~i~~v~~~D~G~Y~C~a~N~~G~ 64 (73)
T cd04969 1 GGDVIIECKPKAA--PKPTISWSKGTELLTN---SSRICIW-PDG-----SLEILNVTKSDEGKYTCFAENFFGK 64 (73)
T ss_pred CCeEEEEEeeeEc--CCCEEEEEECCEEccc---CCCEEEC-CCC-----eEEEccCChhHCEEEEEEEECCCCc
Confidence 6789999999998 4459999999987743 2233332 222 6999999999999999999999993
No 30
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.50 E-value=4.8e-13 Score=85.43 Aligned_cols=77 Identities=22% Similarity=0.297 Sum_probs=55.9
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeEEEee-cCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCC
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNH-NEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPAN 224 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n 224 (236)
+....+..|+++.|.|.+.|.|. ++.+.|++ ++..+... ..++.....+. ..++|.|.++..+|+|.|+|.|.|
T Consensus 7 p~~~~v~~G~~v~l~C~v~G~P~-~p~i~W~~~~g~~l~~~--~~r~~v~~~~~--~~~~L~I~~v~~~D~G~YtC~A~N 81 (96)
T cd05865 7 PSQGEISVGESKFFLCQVAGEAK-DKDISWFSPNGEKLTPN--QQRISVVRNDD--YSSTLTIYNANIDDAGIYKCVVSN 81 (96)
T ss_pred CCccEECCCCeEEEEEEEeCCCC-CCEEEEECCCCcCcccc--CCeEEEEeCCC--CceEEEEeccChhhCEEEEEEEEc
Confidence 33456788999999999999853 35999998 66655321 11333222221 235899999999999999999999
Q ss_pred CC-C
Q psy10361 225 SQ-A 227 (236)
Q Consensus 225 ~~-g 227 (236)
.. |
T Consensus 82 ~~~g 85 (96)
T cd05865 82 EDEG 85 (96)
T ss_pred CCCC
Confidence 97 5
No 31
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.49 E-value=3.2e-13 Score=82.23 Aligned_cols=66 Identities=26% Similarity=0.437 Sum_probs=50.0
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCc
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAK 228 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 228 (236)
+.|.|.+.|.|. |.+.|++++..+.... .++....... ....|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 v~l~C~v~G~P~--P~v~W~k~~~~l~~~~--~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 66 (75)
T cd05893 1 VRLECRVSGVPH--PQIFWKKENESLTHNT--DRVSMHQDNC--GYICLLIQGATKEDAGWYTVSAKNEAGI 66 (75)
T ss_pred CEEEEEEeEecC--CEEEEEECCEECCCCC--CeEEEEEcCC--CEEEEEECCCCHHHCEEEEEEEEcCCCE
Confidence 479999999954 5999999998875321 2344332221 2346999999999999999999999993
No 32
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.49 E-value=6e-13 Score=85.75 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=56.8
Q ss_pred CCCcEEEecCCeEEEEeEEeeCCCCCCeEEEeec--CeEEeee--cCCCceEEEeecCcceEEEEEEcccCCCCCeEEEE
Q psy10361 145 GGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHN--EAIISYD--SQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC 220 (236)
Q Consensus 145 ~~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C 220 (236)
.+.+..+.+|+++.|.|.+.|.| .+.+.|++. +..+... ...+++...... ....|.|.++..+|+|.|+|
T Consensus 7 ~~~~~~~~~G~~v~l~C~~~G~P--~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~---~~~~L~I~~v~~~D~G~Y~C 81 (98)
T cd05870 7 QLKNETTVENGAATLSCKAEGEP--IPEITWKRASDGHTFSEGDKSPDGRIEVKGQH---GESSLHIKDVKLSDSGRYDC 81 (98)
T ss_pred eeccEEEcCCCcEEEEEecccCC--CCeEEEEECCCCceeccCCcCcCceEEEeecC---CeeEEEEeeCCcCCCEEEEE
Confidence 34567888999999999999984 459999984 3333211 111233332211 23479999999999999999
Q ss_pred EeCCCCCc
Q psy10361 221 NPANSQAK 228 (236)
Q Consensus 221 ~a~n~~g~ 228 (236)
.|.|..|.
T Consensus 82 ~A~N~~G~ 89 (98)
T cd05870 82 EAASRIGG 89 (98)
T ss_pred EEeccCCc
Confidence 99999994
No 33
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.49 E-value=1.2e-12 Score=83.01 Aligned_cols=74 Identities=14% Similarity=0.227 Sum_probs=56.4
Q ss_pred CcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 147 ~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
....+..|+.+.|.|.+.|.| .+.+.|++++..+... ...... . ......|.|.++..+|.|.|+|.|.|..
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~P--~p~v~W~~~g~~~~~~---~~~~~~-~--~~~~~~L~I~~v~~~D~g~Y~C~A~N~~ 79 (90)
T cd04972 8 NATVVYEGGTATIRCTAEGSP--LPKVEWIIAGLIVIQT---RTDTLE-T--TVDIYNLQLSNITSETQTTVTCTAENPV 79 (90)
T ss_pred cCEEEcCCCcEEEEEEEEEcC--CCeEEEEECCEEccCC---ccEEEE-e--cCCEEEEEEecCCcccCEEEEEEEECCC
Confidence 345688999999999999994 4599999999876421 111111 1 1134589999999999999999999999
Q ss_pred Cc
Q psy10361 227 AK 228 (236)
Q Consensus 227 g~ 228 (236)
|.
T Consensus 80 G~ 81 (90)
T cd04972 80 GQ 81 (90)
T ss_pred Cc
Confidence 94
No 34
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.49 E-value=3e-13 Score=84.85 Aligned_cols=73 Identities=22% Similarity=0.402 Sum_probs=54.8
Q ss_pred EEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCc
Q psy10361 149 VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAK 228 (236)
Q Consensus 149 ~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 228 (236)
..+..|+.+.|.|.+.|. |.+.+.|++++..+............. ....|.|.++..+|+|.|+|.|.|..|.
T Consensus 4 ~~v~~G~~~~L~C~~~g~--P~p~i~W~k~g~~l~~~~~~~~~~~~~-----~~~~l~i~~~~~~D~G~Y~C~a~N~~G~ 76 (85)
T cd05857 4 HAVPAANTVKFRCPAAGN--PTPTMRWLKNGKEFKQEHRIGGYKVRN-----QHWSLIMESVVPSDKGNYTCVVENEYGS 76 (85)
T ss_pred EEcCCCCEEEEEEEcCCC--CCCEEEEEECCEECCCCCceeeeEEeC-----CceEEEEccCCcccCEEEEEEEEeCCCE
Confidence 456789999999999998 556999999998875422111111111 1247999999999999999999999993
No 35
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.48 E-value=4.1e-13 Score=82.40 Aligned_cols=73 Identities=26% Similarity=0.425 Sum_probs=54.6
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC---ceE
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA---KSV 230 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g---~~~ 230 (236)
|+++.|.|.+.|.| .|.+.|++++..+...... ....... ..|.|.++..+|.|.|+|.|.|..| .++
T Consensus 1 G~~~~l~C~~~g~P--~p~i~W~~~g~~~~~~~~~--~~~~~~~-----~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~ 71 (76)
T cd04978 1 GETGRLDCEAEGIP--QPTITWRLNGVPIEELPPD--PRRRVDG-----GTLILSNVQPNDTAVYQCNASNVHGYLLANA 71 (76)
T ss_pred CCeEEEEEEceeeC--CCEEEEEECCEECCCCCCc--ceEEccC-----CEEEECCCChhhCEEEEEEEEccCCeEEEeE
Confidence 68899999999985 4599999999877542211 1112222 3799999999999999999999998 444
Q ss_pred EEEEc
Q psy10361 231 MVNVL 235 (236)
Q Consensus 231 ~~~v~ 235 (236)
.|.|+
T Consensus 72 ~l~V~ 76 (76)
T cd04978 72 FVHVV 76 (76)
T ss_pred EEEEC
Confidence 55553
No 36
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.48 E-value=8.3e-13 Score=84.87 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=57.6
Q ss_pred CCCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeec--CCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEe
Q psy10361 145 GGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDS--QRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNP 222 (236)
Q Consensus 145 ~~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a 222 (236)
......+.+|+++.|.|.+.+. |.+.+.|++++..+.... ..++..... ....+.|.|.++..+|.|.|.|.|
T Consensus 7 ~~~~~~~~~g~~v~l~C~~~g~--p~p~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~a 81 (96)
T cd05732 7 YLENQTAVELEQITLTCEAEGD--PIPEITWRRATRNFSEGDKSLDGRIVVRG---HARVSSLTLKDVQLTDAGRYDCEA 81 (96)
T ss_pred ecCceeEecCCcEEEEEEEeEc--CCCcEEEEECCcccCCCCccccceEEEeC---CccEEEEEECcCCcCcCEEeEEEE
Confidence 3445678899999999999998 445999999885553211 112222211 113458999999999999999999
Q ss_pred CCCCCc
Q psy10361 223 ANSQAK 228 (236)
Q Consensus 223 ~n~~g~ 228 (236)
.|..|.
T Consensus 82 ~N~~G~ 87 (96)
T cd05732 82 SNRIGG 87 (96)
T ss_pred EeCCCC
Confidence 999993
No 37
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.47 E-value=5.8e-13 Score=83.44 Aligned_cols=71 Identities=27% Similarity=0.406 Sum_probs=56.9
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCC
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANS 225 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~ 225 (236)
+....+..|+++.|.|.+.|.|. +.+.|++++..+.. ..++.. ..+ .|.|.++..+|.|.|+|.|.|.
T Consensus 6 p~~~~~~~G~~~~l~C~~~g~p~--p~v~W~k~g~~~~~---~~~~~~--~~~-----~L~i~~~~~~D~G~Y~C~a~N~ 73 (85)
T cd05728 6 ISDTEADIGSSLRWECKASGNPR--PAYRWLKNGQPLAS---ENRIEV--EAG-----DLRITKLSLSDSGMYQCVAENK 73 (85)
T ss_pred CCccEEcCCCcEEEEEEeeEeCC--CEEEEEECCEECCC---CCeEEE--eCC-----EEEEeeCCHHHCEEEEEEEECC
Confidence 44577889999999999999954 59999999987743 123332 232 7999999999999999999999
Q ss_pred CCc
Q psy10361 226 QAK 228 (236)
Q Consensus 226 ~g~ 228 (236)
.|.
T Consensus 74 ~G~ 76 (85)
T cd05728 74 HGT 76 (85)
T ss_pred CCe
Confidence 993
No 38
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.47 E-value=6.4e-13 Score=80.25 Aligned_cols=62 Identities=23% Similarity=0.385 Sum_probs=48.0
Q ss_pred eEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCc
Q psy10361 156 TINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAK 228 (236)
Q Consensus 156 ~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 228 (236)
++.|.|.+.|.| .|.+.|++++..+.. ..+....... .|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 ~v~l~C~~~G~P--~p~v~W~k~g~~~~~---~~~~~~~~~~------~l~i~~v~~~D~G~Y~C~A~N~~G~ 62 (71)
T cd05723 1 DVIFECEVTGKP--TPTVKWVKNGDMVIP---SDYFKIVKEH------NLQVLGLVKSDEGFYQCIAENDVGN 62 (71)
T ss_pred CEEEEEEEEEeC--CCEEEEEECCeECCC---CCCEEEEecC------CEEEEcCCcccCEEEEEEEEcCCCE
Confidence 478999999994 459999999987643 1233332222 5888899999999999999999993
No 39
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.47 E-value=2.3e-13 Score=80.53 Aligned_cols=55 Identities=25% Similarity=0.346 Sum_probs=45.6
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
+.|.|.+.|.| .|.+.|++++..+.. +. ....|.|.++..+|+|.|+|.|.|..|
T Consensus 1 ~~l~c~v~g~P--~P~v~W~kdg~~l~~---~~-----------~~~~L~i~~v~~~D~G~YtC~a~N~~g 55 (67)
T cd05863 1 VKLPVKVAAYP--PPEFQWYKDGKLISG---KH-----------SQHSLQIKDVTEASAGTYTLVLWNSAA 55 (67)
T ss_pred CEEEEEEEEeC--CCEEEEEECCEECcc---cC-----------CcCEEEECCCCHHHCEEEEEEEEECCc
Confidence 47999999995 459999999988742 10 113799999999999999999999998
No 40
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.46 E-value=4.3e-13 Score=82.01 Aligned_cols=72 Identities=21% Similarity=0.418 Sum_probs=50.8
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC---ceEEEE
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA---KSVMVN 233 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g---~~~~~~ 233 (236)
+.|.|.+.|.| .|.+.|++++..........++.....+. .|.|.++..+|+|.|.|.|.|..| .++.|.
T Consensus 1 a~l~C~~~G~P--~P~v~W~k~~~~~~~~~~~~~~~~~~~~~-----~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~ 73 (75)
T cd05763 1 ARLECAATGHP--TPQIAWQKDGGTDFPAARERRMHVMPEDD-----VFFIVDVKIEDTGVYSCTAQNTAGSISANATLT 73 (75)
T ss_pred CEeEeeccccc--CCEEEEEeCCCccCCcccccceEEecCCC-----EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEE
Confidence 47999999994 45999999886432211122333322232 799999999999999999999998 455565
Q ss_pred Ec
Q psy10361 234 VL 235 (236)
Q Consensus 234 v~ 235 (236)
|+
T Consensus 74 V~ 75 (75)
T cd05763 74 VL 75 (75)
T ss_pred EC
Confidence 53
No 41
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.45 E-value=9.1e-13 Score=83.41 Aligned_cols=70 Identities=23% Similarity=0.461 Sum_probs=55.9
Q ss_pred CcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 147 ~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
..+.+.+|+++.|.|.+.|. .| .+.|++++..+.. .+..+.... .+|.|.++..+|.|.|.|.|.|..
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~-~p--~i~W~kng~~l~~----~~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~N~~ 78 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ-AT--YIWWVNNGSLLVP----PRLQLSNDN-----RTLTFNNVTRSDTGHYQCEASNEV 78 (91)
T ss_pred CccccccCCcEEEEEEeCCC-CC--EEEEEECCEECCC----CCEEEeCCC-----CEEEECcCChhhCEEEEEEEEcCC
Confidence 35678899999999999987 44 9999999987642 233333232 279999999999999999999999
Q ss_pred Cc
Q psy10361 227 AK 228 (236)
Q Consensus 227 g~ 228 (236)
|.
T Consensus 79 G~ 80 (91)
T cd05740 79 SN 80 (91)
T ss_pred CC
Confidence 84
No 42
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.45 E-value=1.3e-12 Score=80.49 Aligned_cols=66 Identities=29% Similarity=0.526 Sum_probs=51.3
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
|+++.|.|.+.|.| .|.+.|++++..+.. ..++...... ....|.|.++..+|.|.|.|.|.|..|
T Consensus 1 G~~v~l~C~~~g~P--~p~v~W~~~~~~~~~---~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G 66 (78)
T cd05743 1 GETVEFTCVATGVP--TPIINWRLNWGHVPD---SARVSITSEG---GYGTLTIRDVKESDQGAYTCEAINTRG 66 (78)
T ss_pred CCEEEEEEEEEEec--CCEEEEEECCeECCC---CCCEEEEECC---CEEEEEECCCChHHCEEEEEEEEecCC
Confidence 68899999999995 459999999876642 1233332222 235799999999999999999999998
No 43
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.45 E-value=1.9e-12 Score=81.91 Aligned_cols=74 Identities=27% Similarity=0.332 Sum_probs=55.7
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeEEEeec-CeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCC
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHN-EAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPAN 224 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n 224 (236)
+....+..|+++.|.|.+.|. |. .+.|+++ +..+.. . .++...... ....|.|.++..+|+|.|+|.|.|
T Consensus 7 ~~~~~v~~G~~v~l~C~~~G~--P~-~v~W~k~~g~~~~~-~--~r~~~~~~g---~~~~L~I~~v~~~D~G~Y~C~A~N 77 (92)
T cd05866 7 LSKVELSVGESKFFTCTAIGE--PE-SIDWYNPQGEKIVS-S--QRVVVQKEG---VRSRLTIYNANIEDAGIYRCQATD 77 (92)
T ss_pred ecceEEcCCCeEEEEEEEEEe--CC-eEEEEeCCCeEecC-C--CCEEEEeCC---CeeEEEEecCChHHCEEEEEEEEc
Confidence 345678889999999999998 54 8999974 555532 2 234433222 235799999999999999999999
Q ss_pred CCCc
Q psy10361 225 SQAK 228 (236)
Q Consensus 225 ~~g~ 228 (236)
..|.
T Consensus 78 ~~G~ 81 (92)
T cd05866 78 AKGQ 81 (92)
T ss_pred CCCc
Confidence 9984
No 44
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.45 E-value=1.9e-12 Score=81.68 Aligned_cols=71 Identities=20% Similarity=0.426 Sum_probs=55.1
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCC
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANS 225 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~ 225 (236)
+....+.+|+++.|.|.+.|.| .+.+.|++++..+.. ..... ... ..|.|.++..+|+|.|.|.|.|.
T Consensus 8 p~~~~~~~g~~v~l~C~~~g~P--~p~v~W~k~~~~~~~---~~~~~--~~~-----~~L~i~~v~~~D~G~Y~C~a~N~ 75 (88)
T cd04968 8 PKDTYALKGQNVTLECFALGNP--VPQIKWRKVDGSMPS---SAEIS--MSG-----AVLKIPNIQFEDEGTYECEAENI 75 (88)
T ss_pred CCceEEeCCCcEEEEEEeeEeC--CCEEEEEECCCcCCC---ccEEE--EeC-----CEEEECCCCcccCEEEEEEEEEC
Confidence 4456778999999999999994 459999998765532 11111 122 37999999999999999999999
Q ss_pred CCc
Q psy10361 226 QAK 228 (236)
Q Consensus 226 ~g~ 228 (236)
.|.
T Consensus 76 ~G~ 78 (88)
T cd04968 76 KGK 78 (88)
T ss_pred CCc
Confidence 993
No 45
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.45 E-value=1.7e-12 Score=79.17 Aligned_cols=65 Identities=23% Similarity=0.421 Sum_probs=50.0
Q ss_pred eEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCc
Q psy10361 156 TINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAK 228 (236)
Q Consensus 156 ~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 228 (236)
.+.|.|.+.|.| .|.+.|++++..+.. ..+....... ..+.|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 ~~~l~c~~~G~P--~p~v~W~k~g~~l~~---~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 65 (74)
T cd05748 1 SVRLEVPISGRP--TPTVTWSKDGKPLKL---SGRVQIETTA---SSTSLVIKNAERSDSGKYTLTLKNPAGE 65 (74)
T ss_pred CEEEEeeEeeeC--CCeEEEEECCEEcCC---CCeEEEEECC---CeEEEEECCCCcCcCEEEEEEEECCCcc
Confidence 368999999995 459999999988732 1233332222 2368999999999999999999999993
No 46
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.45 E-value=6.3e-13 Score=85.72 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=59.7
Q ss_pred cEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeec---CcceEEEEEEcccCCCCCeEEEEEeCC
Q psy10361 148 EVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEK---GETTVSYLLIQKARPSDNGKYQCNPAN 224 (236)
Q Consensus 148 ~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~v~~~d~G~y~C~a~n 224 (236)
...+..|+.+.|.|.+.|.| +|.+.|++++.++.... +....... .....++|.|.++..+|+|.|+|.|.|
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P--~P~v~W~kdg~~l~~~~---~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N 86 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYP--PPQIRWLKDNRTLIENL---TEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQN 86 (101)
T ss_pred eEEEecCCcEEEEEEEEEeC--CCceEEEECCEECcCCc---ceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEc
Confidence 46777899999999999995 45999999999885321 11111111 011335899999999999999999999
Q ss_pred CCCc---eEEEEE
Q psy10361 225 SQAK---SVMVNV 234 (236)
Q Consensus 225 ~~g~---~~~~~v 234 (236)
..|. ++.|.|
T Consensus 87 ~~g~~~~t~~l~V 99 (101)
T cd05859 87 EDAVKSYTFALQI 99 (101)
T ss_pred CCceEEEEEEEEE
Confidence 9984 444444
No 47
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.44 E-value=1.5e-12 Score=79.48 Aligned_cols=66 Identities=27% Similarity=0.549 Sum_probs=49.7
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCc
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAK 228 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 228 (236)
+.|.|.+.|.|. |.+.|++++..+.... .++.+..... ...+|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 v~L~C~v~G~P~--P~v~W~k~~~~i~~~~--~r~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 66 (75)
T cd05744 1 VRLECRVSAIPP--PQIFWKKNNEMLTYNT--DRISLYQDNC--GRICLLIQNANKEDAGWYTVSAVNEAGV 66 (75)
T ss_pred CEEEEEEeecCC--CeEEEEECCEECCCCC--CcEEEEEcCC--CeEEEEECCCCcccCEEEEEEEEcCCCc
Confidence 479999999954 5999999998875322 2333322221 2346999999999999999999999993
No 48
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.44 E-value=2.6e-12 Score=81.53 Aligned_cols=74 Identities=26% Similarity=0.484 Sum_probs=60.5
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCC
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANS 225 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~ 225 (236)
+....+..|+++.|.|.+.+. |.+.+.|++++..+.. . .+....... ..++|.|.++..+|.|.|+|.|.|.
T Consensus 7 ~~~~~v~~G~~~~l~c~~~~~--p~~~v~W~~~~~~l~~-~--~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~~~n~ 78 (90)
T PF07679_consen 7 PKDVTVKEGESVTLECEVSGN--PPPTVTWYKNGRPLTS-S--QRYQIESDG---GSSSLTIKNVTREDAGTYTCVASNS 78 (90)
T ss_dssp SSEEEEETTSEEEEEEEEEES--SSSEEEEEETTEEEES-S--SSEEEEEET---TEEEEEESSESGGGSEEEEEEEEET
T ss_pred cCCEEEeCCCEEEEEEEEEeC--CCCcccccccccceee-e--eeeeeeccc---ceeEEccCCCChhhCEEEEEEEEEC
Confidence 456788999999999999998 4459999999998865 2 233333333 4568999999999999999999999
Q ss_pred CC
Q psy10361 226 QA 227 (236)
Q Consensus 226 ~g 227 (236)
.|
T Consensus 79 ~g 80 (90)
T PF07679_consen 79 SG 80 (90)
T ss_dssp TE
T ss_pred CC
Confidence 98
No 49
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.44 E-value=2.9e-12 Score=82.36 Aligned_cols=75 Identities=27% Similarity=0.425 Sum_probs=54.1
Q ss_pred EEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecC--CCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 149 VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQ--RGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 149 ~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
..+..|+.+.|.|.+.|.| .|.+.|++++..+..... .+++..... ...+.|.|.++..+|+|.|+|.|.|..
T Consensus 12 ~~~~~g~~v~l~C~~~G~P--~P~v~W~~~~~~~~~~~~~~~~~~~v~~~---~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 86 (97)
T cd05869 12 TAMELEEQITLTCEASGDP--IPSITWRTSTRNISSEEKTLDGHIVVRSH---ARVSSLTLKYIQYTDAGEYLCTASNTI 86 (97)
T ss_pred eEEEcCCCEEEEEEeeEeC--CCEEEEEECCccccCCccccCccEEEEcC---ccEEEEEEecCccCcCEEEEEEEecCC
Confidence 3445689999999999994 459999998876532111 122222111 133589999999999999999999999
Q ss_pred Cc
Q psy10361 227 AK 228 (236)
Q Consensus 227 g~ 228 (236)
|.
T Consensus 87 G~ 88 (97)
T cd05869 87 GQ 88 (97)
T ss_pred CC
Confidence 93
No 50
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.43 E-value=3.9e-12 Score=82.33 Aligned_cols=81 Identities=20% Similarity=0.357 Sum_probs=53.6
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecC-CCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCC
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQ-RGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPAN 224 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n 224 (236)
+....+.+|+++.|.|.+.|.|. +.+.|++++..+..... .........++......+....+..+|.|.|+|.|.|
T Consensus 8 p~~~~v~~G~~~~l~C~~~g~P~--p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N 85 (100)
T cd07693 8 PSDLIVSKGDPATLNCKAEGRPT--PTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHN 85 (100)
T ss_pred CceeEEcCCCeEEEEeeCCcCCC--CEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEc
Confidence 45678889999999999999854 59999999988754110 1111222222211111222223468999999999999
Q ss_pred CCCc
Q psy10361 225 SQAK 228 (236)
Q Consensus 225 ~~g~ 228 (236)
..|.
T Consensus 86 ~~G~ 89 (100)
T cd07693 86 SLGE 89 (100)
T ss_pred cccc
Confidence 9984
No 51
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.42 E-value=4.3e-12 Score=80.94 Aligned_cols=67 Identities=25% Similarity=0.402 Sum_probs=50.5
Q ss_pred cCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccC-CCCCeEEEEEeCCCCCce
Q psy10361 153 NGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKAR-PSDNGKYQCNPANSQAKS 229 (236)
Q Consensus 153 ~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~y~C~a~n~~g~~ 229 (236)
+|+++.|.|.+.|.| .+.+.|++++..+... .. ......++ .|.|.++. .+|.|.|+|.|.|.+|..
T Consensus 18 ~g~~v~l~C~~~G~P--~P~i~W~k~g~~l~~~-~~--~~~~~~~g-----~L~i~~~~~~~D~G~Y~C~A~N~~G~~ 85 (94)
T cd05848 18 DEKKVILNCEARGNP--VPTYRWLRNGTEIDTE-SD--YRYSLIDG-----NLIISNPSEVKDSGRYQCLATNSIGSI 85 (94)
T ss_pred CCCEEEEEEEeeecC--CCEEEEEECCeECccC-CC--ceEEeeCC-----eEEEccCCccCcCEEEEEEEEcCCCeE
Confidence 478999999999995 4599999999887431 11 22222233 68888875 699999999999999944
No 52
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.42 E-value=5.4e-12 Score=80.17 Aligned_cols=74 Identities=23% Similarity=0.324 Sum_probs=54.7
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeEEEee-cCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCC
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNH-NEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPAN 224 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n 224 (236)
+....+..|+++.|.|.+.|. |+ .+.|++ ++..+.. ..+....... ...++|.|.+++.+|.|.|+|.|.|
T Consensus 7 p~~~~v~~G~~~~l~C~~~G~--p~-~i~W~~~~~~~~~~---~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~A~N 78 (92)
T cd04977 7 PSQGEISVGESKFFLCQVIGE--PK-DISWFSPNGEKLVT---QQQISVVQND--DVRSTLTIYNANIEDAGIYKCVATD 78 (92)
T ss_pred cCcEEECCCCeEEEEEEeEee--CC-eEEEECCCCCEecc---CCCEEEEeCC--CCEEEEEEecCCcccCEEEEEEEEc
Confidence 345678899999999999998 43 899997 4554432 1222322222 2446899999999999999999999
Q ss_pred CCC
Q psy10361 225 SQA 227 (236)
Q Consensus 225 ~~g 227 (236)
..|
T Consensus 79 ~~g 81 (92)
T cd04977 79 AKG 81 (92)
T ss_pred CCC
Confidence 976
No 53
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.42 E-value=2.2e-12 Score=81.70 Aligned_cols=79 Identities=27% Similarity=0.411 Sum_probs=52.5
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEeec----CeEEeeecCCCceEEEeecCc----ceEEEEEEcccCCCCCeEEEEEeCCC
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNHN----EAIISYDSQRGGVNVITEKGE----TTVSYLLIQKARPSDNGKYQCNPANS 225 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~~----~~~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~d~G~y~C~a~n~ 225 (236)
|+++.|.|.+.+.| .|.+.|++. +..+.... .....+....+. ...+.|.|.+++.+|+|.|+|.|.|.
T Consensus 1 G~~v~L~C~~~g~P--~P~i~W~k~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 77 (90)
T cd05858 1 GSTVEFVCKVYSDA--QPHIQWLKHVEKNGSKYGPDG-LPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNS 77 (90)
T ss_pred CCeEEEEEEEecCC--CCEEEEEEecccCCcEeCCCC-CeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeC
Confidence 67899999999995 459999984 33332111 001111111110 12257999999999999999999999
Q ss_pred CC---ceEEEEEc
Q psy10361 226 QA---KSVMVNVL 235 (236)
Q Consensus 226 ~g---~~~~~~v~ 235 (236)
.| .++.|.|+
T Consensus 78 ~G~~~~~a~L~V~ 90 (90)
T cd05858 78 IGISHHSAWLTVL 90 (90)
T ss_pred CCcccceEEEEEC
Confidence 98 45566664
No 54
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.42 E-value=3.2e-12 Score=78.10 Aligned_cols=68 Identities=16% Similarity=0.229 Sum_probs=48.8
Q ss_pred EEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCc
Q psy10361 158 NLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAK 228 (236)
Q Consensus 158 ~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 228 (236)
.+.|.+.|.|. |.+.|++++..+... ..................|.|.++..+|+|.|+|.|.|..|.
T Consensus 2 ~i~~~v~G~P~--Pti~W~kng~~l~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~ 69 (79)
T cd05855 2 CIPFTVKGNPK--PTLQWFHEGAILNES-EYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGE 69 (79)
T ss_pred eEEEEEeEeCC--CceEEEECCEECCCC-cceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcc
Confidence 36899999954 599999999988542 111111111122223468999999999999999999999993
No 55
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.42 E-value=3e-12 Score=80.27 Aligned_cols=78 Identities=23% Similarity=0.408 Sum_probs=54.2
Q ss_pred CeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC---ceEE
Q psy10361 155 STINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA---KSVM 231 (236)
Q Consensus 155 ~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g---~~~~ 231 (236)
+++.|.|.+.+.|.|...+.|++++..+.............. ......|.|.+++.+|+|.|+|.|.|.+| .++.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 78 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGG--KDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASAD 78 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEec--ccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEE
Confidence 468999999999766557899999988754322111111100 01224799999999999999999999998 3445
Q ss_pred EEE
Q psy10361 232 VNV 234 (236)
Q Consensus 232 ~~v 234 (236)
|.|
T Consensus 79 l~V 81 (85)
T cd04970 79 LIV 81 (85)
T ss_pred EEE
Confidence 554
No 56
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.41 E-value=3.6e-12 Score=80.10 Aligned_cols=73 Identities=26% Similarity=0.491 Sum_probs=56.4
Q ss_pred CCcEEEecCCeEEEEeEE-eeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCC
Q psy10361 146 GPEVFIENGSTINLTCVV-RFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPAN 224 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~-~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n 224 (236)
+....+.+|+++.|.|.+ .+. |.+.+.|++++..+.... .+..... + ..|.|.++..+|.|.|+|.|.|
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~--p~p~i~W~k~g~~~~~~~--~~~~~~~-~-----~~L~I~~~~~~D~G~Y~C~a~N 72 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGH--PEPTVSWRKDGQPLNLDN--ERVRIVD-D-----GNLLIAEARKSDEGTYKCVATN 72 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCC--CCCEEEEEECCEECCCCC--CCEEEcc-C-----CEEEEeECCcccCEEEEEEEEe
Confidence 345678899999999998 677 455999999998775421 2233222 2 2799999999999999999999
Q ss_pred CCCc
Q psy10361 225 SQAK 228 (236)
Q Consensus 225 ~~g~ 228 (236)
..|.
T Consensus 73 ~~G~ 76 (86)
T cd05724 73 MVGE 76 (86)
T ss_pred ccCc
Confidence 9984
No 57
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.41 E-value=8.1e-12 Score=80.46 Aligned_cols=85 Identities=25% Similarity=0.381 Sum_probs=60.4
Q ss_pred ccCCCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeec-CcceEEEEEEcccCCCC-CeEEEE
Q psy10361 143 IIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEK-GETTVSYLLIQKARPSD-NGKYQC 220 (236)
Q Consensus 143 ~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~v~~~d-~G~y~C 220 (236)
+..+....+..|+++.|.|.+.|.|.| ..+.|++++..+.... ..++.+.... .....+.|.|.++..+| .|.|.|
T Consensus 5 i~~~~~~~~~~G~~v~L~C~~~g~P~P-~~v~W~~~~~~i~~~~-~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C 82 (98)
T cd05758 5 ITSEATQYAILGDKGRVECFIFSTPPP-DRIVWTWKENELESGS-SGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNC 82 (98)
T ss_pred EcCCCcEEEeCCCcEEEEEEEcccCCC-CEeEEEECCEEccCCC-CCCEEEEEecCCCceEEEEEECCccccccceeEEE
Confidence 333455677899999999999998533 2699999998775422 1234433321 12234689999999855 899999
Q ss_pred EeCCCCCce
Q psy10361 221 NPANSQAKS 229 (236)
Q Consensus 221 ~a~n~~g~~ 229 (236)
.|.|..|..
T Consensus 83 ~A~N~~G~~ 91 (98)
T cd05758 83 TAWNSFGSG 91 (98)
T ss_pred EEEcCCCcc
Confidence 999999953
No 58
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.41 E-value=2.7e-12 Score=78.17 Aligned_cols=63 Identities=25% Similarity=0.467 Sum_probs=48.3
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCc
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAK 228 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 228 (236)
+.|.|.+.|.| .|.+.|++++..+... ...++.. ...+ .|.|.+++.+|+|.|.|.|.|..|.
T Consensus 1 a~l~C~~~G~P--~p~v~W~k~~~~~~~~-~~~~~~~-~~~g-----~L~i~~~~~~D~G~Y~C~a~N~~G~ 63 (74)
T cd05738 1 ATMLCAASGNP--DPEITWFKDFLPVDTT-SNGRIKQ-LRSG-----ALQIENSEESDQGKYECVATNSAGT 63 (74)
T ss_pred CEEEEEEeEec--CCEEEEEECCEECccC-CCCCEEE-cCCc-----EEEECCCChhhCEEEEEEEECCCCc
Confidence 47999999994 4599999999876431 2223333 2232 6999999999999999999999984
No 59
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.40 E-value=2.3e-12 Score=77.39 Aligned_cols=62 Identities=23% Similarity=0.547 Sum_probs=48.1
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCce
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAKS 229 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~ 229 (236)
+.|.|.+.|.| .+.+.|++++..+.. ..++... .. ..|.|.++..+|+|.|+|.|.|.+|..
T Consensus 1 v~L~C~~~g~P--~p~i~W~k~g~~~~~---~~~~~~~-~~-----~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 62 (69)
T cd05746 1 VQIPCSAQGDP--EPTITWNKDGVQVTE---SGKFHIS-PE-----GYLAIRDVGVADQGRYECVARNTIGYA 62 (69)
T ss_pred CEeEecceEeC--CCEEEEEECCEECCC---CCCEEEC-CC-----CEEEECcCChhhCEEEEEEEECCCCcE
Confidence 47999999995 459999999987643 2233322 22 279999999999999999999999943
No 60
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.39 E-value=3.6e-12 Score=79.00 Aligned_cols=79 Identities=19% Similarity=0.330 Sum_probs=56.1
Q ss_pred CeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC---ceEE
Q psy10361 155 STINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA---KSVM 231 (236)
Q Consensus 155 ~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g---~~~~ 231 (236)
+++.|.|.+.+.|.+++.+.|++++..+.......+...... ....+.|.|.+++.+|+|.|+|.|.|.++ .++.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~--~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~ 78 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGG--QDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAAD 78 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEecc--CCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEE
Confidence 468899999887667789999999999864221122222111 01123799999999999999999999997 4455
Q ss_pred EEEc
Q psy10361 232 VNVL 235 (236)
Q Consensus 232 ~~v~ 235 (236)
|.|.
T Consensus 79 L~V~ 82 (85)
T cd05853 79 LIVR 82 (85)
T ss_pred EEEe
Confidence 5553
No 61
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.39 E-value=2.3e-12 Score=77.82 Aligned_cols=61 Identities=21% Similarity=0.487 Sum_probs=46.7
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCc
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAK 228 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 228 (236)
+.|.|.+.|.| .|.+.|++++..+... +....... .+|.|.++..+|.|.|+|.|.|..|.
T Consensus 1 ~~L~C~~~G~P--~P~v~W~k~~~~~~~~----~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~N~~G~ 61 (71)
T cd05876 1 LVLECIAEGLP--TPEVHWDRIDGPLSPN----RTKKLNNN-----KTLQLDNVLESDDGEYVCTAENSEGS 61 (71)
T ss_pred CEEEEEeeEec--CCeEEEEECCcCCCCC----ceeEEcCC-----CEEEEcccCHHhCEEEEEEEEcCCCe
Confidence 46999999994 4599999998765321 11222222 37999999999999999999999994
No 62
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.38 E-value=2.8e-12 Score=77.31 Aligned_cols=60 Identities=30% Similarity=0.422 Sum_probs=47.0
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCc
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAK 228 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 228 (236)
+.|.|.+.|.| .+.+.|++++..+... .+ . .... .+|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 ~~l~c~v~g~P--~p~v~W~k~g~~l~~~---~~-~-~~~~-----~~L~I~~v~~~D~G~YtC~a~N~~g~ 60 (71)
T cd04976 1 VRLPVKVKAYP--PPEIQWYKNGKLISEK---NR-T-KKSG-----HSLTIKDVTEEDAGNYTVVLTNKQAK 60 (71)
T ss_pred CEEEeEEEEeC--CCEEEEEECCEECCCC---CE-E-EcCC-----CEEEECcCCHHHCEEEEEEEEcCCcc
Confidence 46999999995 4599999999887532 11 1 1222 37999999999999999999999983
No 63
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.38 E-value=4.1e-12 Score=80.49 Aligned_cols=74 Identities=23% Similarity=0.387 Sum_probs=52.9
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEeecCeEEeee-----cCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC-
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYD-----SQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA- 227 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g- 227 (236)
|+++.|.|.+.+.| .+.+.|++++..+... ....++... .. ..|.|.++..+|+|.|.|.|.|..|
T Consensus 1 G~~v~L~C~~~g~P--~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~-~~-----~~L~I~~v~~~D~G~Y~C~a~N~~G~ 72 (90)
T cd05726 1 GRTVTFQCEATGNP--QPAIFWQKEGSQNLLFSYQPPQSSSRFSVS-QT-----GDLTITNVQRSDVGYYICQTLNVAGS 72 (90)
T ss_pred CCEEEEEEECCccC--CCEEEEEeCCCcceeecccCCCCCCeEEEC-CC-----CeEEEeeCChhhCEEEEEEEEcCCCc
Confidence 68899999999985 4599999987643210 112223321 12 2699999999999999999999998
Q ss_pred --ceEEEEEc
Q psy10361 228 --KSVMVNVL 235 (236)
Q Consensus 228 --~~~~~~v~ 235 (236)
..+.|.|.
T Consensus 73 ~~~~~~l~V~ 82 (90)
T cd05726 73 ILTKAYLEVT 82 (90)
T ss_pred eEEEEEEEEe
Confidence 34555554
No 64
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.37 E-value=2.1e-11 Score=77.82 Aligned_cols=67 Identities=30% Similarity=0.529 Sum_probs=49.8
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccC-CCCCeEEEEEeCCCCCceE
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKAR-PSDNGKYQCNPANSQAKSV 230 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~y~C~a~n~~g~~~ 230 (236)
|+++.|.|.+.|.| .+.+.|++++..+... ...+... ..+ .|.|.++. ..|.|.|.|.|.|..|...
T Consensus 19 g~~v~l~C~a~g~P--~p~i~W~~~g~~l~~~-~~~~~~~--~~g-----~L~I~~~~~~~D~G~Y~C~A~N~~G~~~ 86 (94)
T cd05850 19 EEKVTLGCRARASP--PATYRWKMNGTEIKFA-PESRYTL--VAG-----NLVINNPQKARDAGSYQCLAINRCGTVV 86 (94)
T ss_pred CCeEEEEeEceeCC--CCEEEEEECCEECccC-CCceEEE--ECC-----eEEEccCCccCcCEEEEEEEEcCcCcEE
Confidence 46899999999994 4599999999887532 1122222 232 68888765 6999999999999999443
No 65
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.37 E-value=7.9e-12 Score=81.93 Aligned_cols=78 Identities=19% Similarity=0.305 Sum_probs=55.1
Q ss_pred cCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEE-eecCcceEEEEEEcccC-CCCCeEEEEEeCCCCCc--
Q psy10361 153 NGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVI-TEKGETTVSYLLIQKAR-PSDNGKYQCNPANSQAK-- 228 (236)
Q Consensus 153 ~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~i~~v~-~~d~G~y~C~a~n~~g~-- 228 (236)
.|.++.|.|.+.|. |.+.+.|++++..+..... ++... ...+....+.|.|.++. .+|.|.|+|.|.|.+|.
T Consensus 22 ~g~~v~L~C~a~G~--P~p~i~W~k~g~~l~~~~~--r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~ 97 (109)
T cd05773 22 GSSDANLVCQAQGV--PRVQFRWAKNGVPLDLGNP--RYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDS 97 (109)
T ss_pred CCCEEEEEEECccc--CCCEEEEEECCEECCCCCC--eEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCc
Confidence 46799999999998 5569999999988753222 22211 11122234679999997 58999999999999983
Q ss_pred -eEEEEE
Q psy10361 229 -SVMVNV 234 (236)
Q Consensus 229 -~~~~~v 234 (236)
++.|.|
T Consensus 98 ~~i~L~~ 104 (109)
T cd05773 98 LDIQLVS 104 (109)
T ss_pred EEEEEEe
Confidence 344444
No 66
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.36 E-value=9e-12 Score=79.79 Aligned_cols=74 Identities=24% Similarity=0.472 Sum_probs=53.7
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEccc-----CCCCCeEEEE
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA-----RPSDNGKYQC 220 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v-----~~~d~G~y~C 220 (236)
+....+.+|+++.|.|.+.+.| .+.+.|++++..+.... ..+.... .++ .|.|.++ ...|.|.|.|
T Consensus 6 P~~~~~~~g~~v~l~C~v~g~P--~p~i~W~k~g~~l~~~~-~~~~~~~-~~~-----~l~i~~v~~~~~~~~D~G~Y~C 76 (95)
T cd05722 6 PSDIVAVRGGPVVLNCSAEGEP--PPKIEWKKDGVLLNLVS-DERRQQL-PNG-----SLLITSVVHSKHNKPDEGFYQC 76 (95)
T ss_pred CCCeEEcCCCCEEEeeecccCC--CCEEEEEECCeECcccc-CcceEEc-cCC-----eEEEeeeeccCCCCCcCEEEEE
Confidence 4456677899999999999984 56999999998875421 1122222 222 4556555 6899999999
Q ss_pred EeCCC-CCc
Q psy10361 221 NPANS-QAK 228 (236)
Q Consensus 221 ~a~n~-~g~ 228 (236)
.|.|. .|.
T Consensus 77 ~a~N~~~G~ 85 (95)
T cd05722 77 VAQNDSLGS 85 (95)
T ss_pred EEECCccCc
Confidence 99999 884
No 67
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.36 E-value=9.3e-12 Score=76.27 Aligned_cols=71 Identities=24% Similarity=0.308 Sum_probs=52.0
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC---ceEEEE
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA---KSVMVN 233 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g---~~~~~~ 233 (236)
+.|.|.+.|.| .+.+.|++++..+... ...+....... ..|.|.++..+|.|.|+|.|.|..| ..+.|.
T Consensus 1 ~~L~C~v~g~P--~p~v~W~k~~~~l~~~-~~~~~~~~~~~-----~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (76)
T cd05736 1 ASLRCHAEGIP--LPRLTWLKNGMDITPK-LSKQLTLIANG-----SELHISNVRYEDTGAYTCIAKNEAGVDEDISSLF 72 (76)
T ss_pred CEeEeEeeecC--CCEEEEEECCEECCCC-CCccEEEeCCC-----CEEEECcCCcccCEEEEEEEEcCCCCcceEEEEE
Confidence 36899999984 4599999999877532 22233332222 3799999999999999999999998 444555
Q ss_pred Ec
Q psy10361 234 VL 235 (236)
Q Consensus 234 v~ 235 (236)
|.
T Consensus 73 V~ 74 (76)
T cd05736 73 VE 74 (76)
T ss_pred EE
Confidence 53
No 68
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.36 E-value=1.1e-11 Score=78.43 Aligned_cols=78 Identities=23% Similarity=0.372 Sum_probs=51.0
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEeecC----eEEeeecCCCceEEEee---cC-cceEEEEEEcccCCCCCeEEEEEeCCC
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNHNE----AIISYDSQRGGVNVITE---KG-ETTVSYLLIQKARPSDNGKYQCNPANS 225 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~~~----~~~~~~~~~~~~~~~~~---~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~ 225 (236)
|+++.|.|.+.|.|. |.+.|++++ ..+...... ....... .. ......|.|.++..+|+|.|+|.|.|.
T Consensus 1 G~~v~l~C~v~g~P~--P~i~W~k~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 77 (90)
T cd04974 1 GSDVEFHCKVYSDAQ--PHIQWLKHVEVNGSKYGPDGLP-YVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNS 77 (90)
T ss_pred CCcEEEEEEEeCCCC--CeEEEEEecccCCceeCCCCCc-eEEEEEecCCcccccccceEEEeccccccCcEEEEEeecc
Confidence 678999999999954 599999964 222111100 1111110 00 011237999999999999999999999
Q ss_pred CC---ceEEEEE
Q psy10361 226 QA---KSVMVNV 234 (236)
Q Consensus 226 ~g---~~~~~~v 234 (236)
.| .++.|.|
T Consensus 78 ~G~~~~sa~L~V 89 (90)
T cd04974 78 IGPSHHSAWLTV 89 (90)
T ss_pred cCcccCCEEEEe
Confidence 99 4556665
No 69
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.35 E-value=2.8e-11 Score=77.06 Aligned_cols=89 Identities=20% Similarity=0.342 Sum_probs=64.8
Q ss_pred cccCCCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEee-cCcceEEEEEEcccCCCC-CeEEE
Q psy10361 142 DIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITE-KGETTVSYLLIQKARPSD-NGKYQ 219 (236)
Q Consensus 142 ~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~d-~G~y~ 219 (236)
.|.......+..|+++.|.|.+.+.|. +..+.|.+.+..+... ..+++.+... ......+.|+|.++...| .|.|.
T Consensus 4 ~i~~~~s~~~~~G~~~~L~C~~~s~P~-P~~i~W~w~~~~i~~~-~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~ 81 (98)
T cd05898 4 IISSEQVQYAVRGERGKVKCFIGSTPP-PDRIAWAWKENVLESG-TSERYTVERTSTGSGVLSTLTINNIMEADFQTHYN 81 (98)
T ss_pred EEecCceEEEeCCCcEEEEEEEccCCC-CcEEEEEEccccccCC-CCCCEEEEEEccCCCcEEEEEECCCccccCCcEEE
Confidence 444456778889999999999988763 4578999888766442 2235554433 223466899999998777 78999
Q ss_pred EEeCCCCCceEEE
Q psy10361 220 CNPANSQAKSVMV 232 (236)
Q Consensus 220 C~a~n~~g~~~~~ 232 (236)
|.|.|.+|..-..
T Consensus 82 C~a~N~~G~d~~~ 94 (98)
T cd05898 82 CTAWNSFGSGTAI 94 (98)
T ss_pred EEEEeCCccceEE
Confidence 9999999965443
No 70
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.35 E-value=4.3e-12 Score=76.19 Aligned_cols=60 Identities=22% Similarity=0.578 Sum_probs=46.6
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCc
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAK 228 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 228 (236)
+.|.|.+.|. |++.+.|++++..+. ..+.... ... .|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 v~l~C~~~g~--P~p~v~W~k~~~~~~----~~~~~~~-~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~ 60 (69)
T cd05725 1 VEFQCEVGGD--PVPTVLWRKEDGELP----KGRAEIL-DDK-----SLKIRNVTAGDEGSYTCEAENMVGK 60 (69)
T ss_pred CEEEEECccC--CCCEEEEEECCccCC----CCcEEEe-eCC-----EEEECcCChhHCEEEEEEEEcCCCc
Confidence 4799999998 445999999976552 1233333 222 7999999999999999999999993
No 71
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.35 E-value=5.4e-12 Score=78.53 Aligned_cols=69 Identities=23% Similarity=0.413 Sum_probs=52.3
Q ss_pred EEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCc
Q psy10361 150 FIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAK 228 (236)
Q Consensus 150 ~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 228 (236)
....|+++.|.|.+.+.| .+.+.|++++..+..... ... . ....+|.|.++..+|+|.|+|.|.|..|.
T Consensus 5 ~~~~G~~v~L~C~~~g~p--~p~i~W~k~~~~~~~~~~---~~~--~---~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~ 73 (82)
T cd05856 5 ARPVGSSVRLKCVASGNP--RPDITWLKDNKPLTPTEI---GES--R---KKKWTLSLKNLKPEDSGKYTCHVSNRAGE 73 (82)
T ss_pred eccCCCeEEEEEEeeEeC--CCcEEEEECCcCCcCCcc---cee--c---CceEEEEEccCChhhCEEEEEEEEcCCcc
Confidence 456799999999999985 458999999876643111 110 1 12257999999999999999999999993
No 72
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.35 E-value=3.6e-12 Score=76.31 Aligned_cols=58 Identities=19% Similarity=0.276 Sum_probs=46.2
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
+.|.|.+.|.| .|.+.|++++.++... .. .. .. ..|.|.++..+|+|.|+|.|.|..|
T Consensus 1 ~~~~c~v~G~P--~P~v~W~k~g~~l~~~---~~--~~-~~-----~~L~I~~v~~~D~G~YtC~a~N~~G 58 (70)
T cd05864 1 VKIPVKYYGYP--PPEVKWYKNGQLIVLN---HT--FK-RG-----VHLTIYEVTEKDAGNYTVVLTNPIT 58 (70)
T ss_pred CEEEeEEEEeC--CCEEEEEECCEECCCC---CE--Ec-cC-----CEEEECcCCHHHCEEEEEEEEECCC
Confidence 36899999995 4599999999987431 11 11 11 2699999999999999999999998
No 73
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.35 E-value=1.2e-11 Score=75.42 Aligned_cols=63 Identities=29% Similarity=0.469 Sum_probs=47.4
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEee-cCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNH-NEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
|+.+.|.|.+.+. |.+.+.|++ ++..+.. . .+... ..++ +|.|..+..+|.|.|+|.|.|..|
T Consensus 1 G~~~~l~C~~~g~--P~p~v~W~~~~~~~~~~-~--~~~~~-~~~~-----~L~i~~~~~~D~G~Y~C~a~N~~G 64 (74)
T cd05764 1 GQRATLRCKARGD--PEPAIHWISPDGKLISN-S--SRTLV-YDNG-----TLDILITTVKDTGSFTCIASNAAG 64 (74)
T ss_pred CCeEEEEEEccCc--CCCEEEEEeCCCEEecC-C--CeEEE-ecCC-----EEEEEECChhhCEEEEEEEECCCC
Confidence 6889999999988 455999997 4554422 1 12222 2222 799999999999999999999998
No 74
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.34 E-value=1.2e-11 Score=76.31 Aligned_cols=68 Identities=19% Similarity=0.375 Sum_probs=53.6
Q ss_pred cEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 148 EVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 148 ~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
...+.+|+.+.|.|.+.+. + +.+.|++++..+.. ..+... .. ..|.|.++..+|+|.|+|.|.|..|
T Consensus 3 ~~~~~~G~~v~l~C~~~~~--~-~~v~W~k~g~~l~~---~~~~~~--~~-----~~L~I~~~~~~DsG~Y~C~a~n~~g 69 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD--V-QSINWTKDGVQLGE---NNRTRI--TG-----EEVQIKDAVPRDSGLYACVTSSPSG 69 (79)
T ss_pred cEEecCCCCEEEEEEecCC--C-ceEEEeeCCcCCCC---CceEEE--eC-----CEEEECCCChhhCEEEEEEEeCCCC
Confidence 4567889999999999885 2 38999999988743 123332 22 2799999999999999999999998
Q ss_pred c
Q psy10361 228 K 228 (236)
Q Consensus 228 ~ 228 (236)
.
T Consensus 70 ~ 70 (79)
T cd04973 70 S 70 (79)
T ss_pred c
Confidence 4
No 75
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.34 E-value=1.7e-11 Score=75.70 Aligned_cols=68 Identities=19% Similarity=0.277 Sum_probs=48.2
Q ss_pred EEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEee--cCcceEEEEEEcccCCCCCeEEEEEeCCCCCc
Q psy10361 158 NLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITE--KGETTVSYLLIQKARPSDNGKYQCNPANSQAK 228 (236)
Q Consensus 158 ~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 228 (236)
.|.|.+.|.| .|.+.|++++..+.... ......... ........|.|.++..+|+|.|+|.|.|.+|.
T Consensus 2 ~i~~~v~G~P--~P~v~W~k~g~~i~~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~ 71 (81)
T cd04971 2 CIPFTVRGNP--KPTLTWYHNGAVLNESD-YIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQ 71 (81)
T ss_pred eEEEEeEeeC--CCcEEEEECCEECcCCC-ceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCC
Confidence 3689999995 45999999999885422 111111111 01123457999999999999999999999994
No 76
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.34 E-value=1e-11 Score=76.58 Aligned_cols=69 Identities=17% Similarity=0.349 Sum_probs=52.5
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCC-eEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCC
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPA-YIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPAN 224 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n 224 (236)
+....+..|+++.|.|.+.|. |.| .+.|++++..+.. ... . ..+.|.|..+ .|.|.|.|.|.|
T Consensus 5 P~~~~v~~G~~v~l~C~a~G~--P~P~~I~W~k~g~~l~~---~~~----~-----~~s~L~i~~~--~d~g~Y~C~A~N 68 (81)
T cd05749 5 PEDLSVTANTPFNLTCQAVGP--PEPVEILWWQGGSPLGD---PPA----P-----SPSVLNVPGL--NETSKFSCEAHN 68 (81)
T ss_pred CCceEEcCCCCEEEEEEeeee--cCCeEEEEEECCEECCC---CCC----C-----CCCEEEEccc--cCCeEEEEEEEe
Confidence 456788999999999999999 445 6999999987742 000 0 1136888876 578999999999
Q ss_pred CCCceE
Q psy10361 225 SQAKSV 230 (236)
Q Consensus 225 ~~g~~~ 230 (236)
.+|...
T Consensus 69 ~~G~~~ 74 (81)
T cd05749 69 AKGVTT 74 (81)
T ss_pred ccCcEE
Confidence 999443
No 77
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.33 E-value=7.9e-12 Score=75.53 Aligned_cols=60 Identities=22% Similarity=0.377 Sum_probs=45.9
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
+.|.|.+.|.| .+.+.|++++..+.. .+....... ..|.|.++..+|.|.|+|.|.|..|
T Consensus 1 v~l~C~~~g~P--~p~v~W~k~~~~~~~----~~~~~~~~~-----~~L~i~~v~~~D~G~Y~C~a~N~~G 60 (71)
T cd05731 1 LLLECIAEGLP--TPEISWIKIGGELPA----DRTKFENFN-----KTLKIDNVSEEDDGEYRCTASNSLG 60 (71)
T ss_pred CEEEEEeeEec--CCeEEEEECCeECCC----CceeEecCC-----CEEEECCCCHHHCEEEEEEEEeCCc
Confidence 46999999995 459999999876532 112211112 3799999999999999999999998
No 78
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.32 E-value=1.3e-11 Score=78.50 Aligned_cols=75 Identities=19% Similarity=0.355 Sum_probs=53.7
Q ss_pred cEEEecCCeEEEEeEEeeCC---CCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCC
Q psy10361 148 EVFIENGSTINLTCVVRFSP---EPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPAN 224 (236)
Q Consensus 148 ~~~~~~g~~~~l~C~~~~~p---~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n 224 (236)
...+.+|+.+.|.|.+.+.. .|.+.+.|++++..+.... .........+ ..|.|.++..+|+|.|+|.+.|
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~-~~~~r~~~~~-----~~L~I~~~~~~DsG~Y~C~~~N 81 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPT-EERSRMHQQK-----DLLWFLPAALEDSGLYTCVVRN 81 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccc-cccceeeecC-----CeEEEccCCcccCeEEEEEEcC
Confidence 45677899999999998821 1445899999986543211 1111111222 2799999999999999999999
Q ss_pred CCCc
Q psy10361 225 SQAK 228 (236)
Q Consensus 225 ~~g~ 228 (236)
..|.
T Consensus 82 ~~g~ 85 (94)
T cd05756 82 STYC 85 (94)
T ss_pred CCcc
Confidence 9983
No 79
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.31 E-value=3.8e-11 Score=76.31 Aligned_cols=64 Identities=23% Similarity=0.411 Sum_probs=48.7
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccC-CCCCeEEEEEeCCCCCc
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKAR-PSDNGKYQCNPANSQAK 228 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~y~C~a~n~~g~ 228 (236)
++.+.|.|.+.|.| .+.+.|++++..+... ..+.. ..++ .|.|.++. .+|+|.|.|.|.|..|.
T Consensus 19 ~~~v~l~C~a~G~P--~P~i~W~k~~~~i~~~--~~~~~--~~~g-----~L~I~~~~~~~D~G~Y~C~A~N~~G~ 83 (93)
T cd05849 19 EGKVSVNCRARANP--FPIYKWRKNNLDIDLT--NDRYS--MVGG-----NLVINNPDKYKDAGRYVCIVSNIYGK 83 (93)
T ss_pred CCeEEEeCcCccCC--CCEEEEEECCEEccCC--CCeEE--EECC-----EEEECcCCcCCCCEEEEEEEEeCcce
Confidence 45799999999994 4599999999877431 12222 2233 79999885 68999999999999983
No 80
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.31 E-value=2.6e-11 Score=72.56 Aligned_cols=61 Identities=21% Similarity=0.463 Sum_probs=45.8
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCc
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAK 228 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 228 (236)
|+++.|.|.+.|.|. |.+.|++++..+... .+.. ... ..|.|.++ .|.|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~a~G~P~--P~v~W~k~g~~l~~~---~~~~--~~~-----~~L~i~~~--~d~G~Y~C~A~N~~G~ 61 (69)
T cd05739 1 GGSVNLTCVAVGAPM--PYVKWMKGGEELTKE---DEMP--VGR-----NVLELTNI--YESANYTCVAISSLGM 61 (69)
T ss_pred CCeEEEEEEeeecCC--CEEEEEECCEECCCc---ccee--cCc-----cEEEEecc--ccCeeEEEEEEeCCCE
Confidence 678999999999954 599999999876321 1111 111 26888886 4799999999999994
No 81
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.30 E-value=3.1e-11 Score=73.95 Aligned_cols=70 Identities=29% Similarity=0.471 Sum_probs=53.6
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCC
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANS 225 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~ 225 (236)
|+...+.+|+++.|.|.+.+.|. +..+.|++++..+.. .. ..|.|.++ .+|+|.|+|.|.|.
T Consensus 7 P~~~~v~~G~~V~L~C~~~~~p~-~~~~~W~kng~~l~~-----------~~-----~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 7 PPWTTIFQGEKVTLTCNGFNSPE-QNSTQWYHNGKLLET-----------TT-----NSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CCCeEeeCCCCEEEEEeCCCCCC-CccEEEEECCEEeec-----------cC-----CeEEEeec-ccCCEEeEEECCCC
Confidence 45577889999999999988753 246999999987632 11 26889999 99999999999987
Q ss_pred C-CceEEEE
Q psy10361 226 Q-AKSVMVN 233 (236)
Q Consensus 226 ~-g~~~~~~ 233 (236)
. ...+.|.
T Consensus 69 ~~S~~v~l~ 77 (78)
T cd05752 69 SLSDPVHLE 77 (78)
T ss_pred cCCCCEEEe
Confidence 4 2445544
No 82
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.30 E-value=2.3e-11 Score=76.02 Aligned_cols=73 Identities=19% Similarity=0.239 Sum_probs=50.5
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
|+++.|.|.+.+.+.|++.+.|.+++..+.......... .........+.|.|.+++.+|+|.|.|.|.|..|
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~-~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~ 73 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQ-SLSEATELSSTLTIPNATLKDSGTYTCAASSGTM 73 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeeccc-ccccceEEEEEEEECCCChhhCEEEEEEEccCCC
Confidence 688999999999855566999998775442110000000 0011112446899999999999999999999998
No 83
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.30 E-value=1.7e-11 Score=75.25 Aligned_cols=65 Identities=23% Similarity=0.483 Sum_probs=47.2
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCC----CCCeEEEEEeCCCCCce
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARP----SDNGKYQCNPANSQAKS 229 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~----~d~G~y~C~a~n~~g~~ 229 (236)
+.|.|.+.|. |.+.+.|++++..+... ...++......+ .|.|..+.. +|+|.|.|.|.|.+|..
T Consensus 1 i~l~C~~~G~--P~P~v~W~k~g~~l~~~-~~~~~~~~~~~g-----~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05733 1 IVIKCEAKGN--PPPTFSWTRNGTHFDPE-KDPRVTMKPDSG-----TLVIDNMNGGRAEDYEGEYQCYASNELGTA 69 (77)
T ss_pred CEEEeeCccc--CCCeEEEEECCeECCCC-CCCCEEEeCCCC-----EEEEeccCCCCCcCCCEEEEEEEEcCCCcE
Confidence 4799999999 45599999999877432 122333333333 788888754 68999999999999943
No 84
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.30 E-value=2.2e-11 Score=74.40 Aligned_cols=68 Identities=21% Similarity=0.366 Sum_probs=49.0
Q ss_pred EEEEeEEee-CCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCce
Q psy10361 157 INLTCVVRF-SPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAKS 229 (236)
Q Consensus 157 ~~l~C~~~~-~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~ 229 (236)
+.|.|.+.+ . |++.+.|++++..+..........+... .....|.|.++..+|.|.|+|.|.|..|..
T Consensus 1 ~~l~C~~~g~~--P~p~~~W~k~g~~l~~~~~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 69 (75)
T cd05750 1 LVLKCEATSEY--PSLRFKWFKDGKELNRKNKPRNIKIRNK---KKNSELQINKAKLADSGEYTCVVENILGND 69 (75)
T ss_pred CEEEEEccCCC--CCceEEEEcCCeeccccCCcceEEEEec---CceEEEEEccCCcccCeEEEEEEEEcCCce
Confidence 369999998 7 5569999999988754221111111111 133589999999999999999999999943
No 85
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.29 E-value=2e-11 Score=73.28 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=45.9
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
+.|.|.+.|.| +|.+.|++++.++.... .+. .... .+|.|.++..+|+|.|+|.|.|...
T Consensus 1 ~~l~c~v~g~P--~P~v~W~kdg~~l~~~~--~~~--~~~~-----~~L~I~~v~~~D~G~YtC~a~~~~~ 60 (72)
T cd07702 1 YRLTPKVKAFP--APEVIWLKDGLPAAEKC--SRY--HVDG-----YSLVIKDVTEEDAGIYTILLGIKQY 60 (72)
T ss_pred CeEEeeEEEcC--CCeEEEEECCEECCCCC--cEE--EeCC-----CEEEECcCCHHHCEEEEEEEEcccc
Confidence 36899999995 45999999998774311 122 1222 2799999999999999999999964
No 86
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.29 E-value=3.3e-11 Score=73.81 Aligned_cols=65 Identities=23% Similarity=0.456 Sum_probs=46.1
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCC----CCCeEEEEEeCCCCCce
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARP----SDNGKYQCNPANSQAKS 229 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~----~d~G~y~C~a~n~~g~~ 229 (236)
+.|.|.+.|. |.|.+.|++++..+.. ....+......++ +|.|..+.. .|.|.|+|.|.|..|..
T Consensus 1 ~~l~C~a~G~--P~P~i~W~k~g~~l~~-~~~~~~~~~~~~g-----~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05874 1 IVIQCEAKGK--PPPSFSWTRNGTHFDI-DKDPKVTMKPNTG-----TLVINIMNGEKAEAYEGVYQCTARNERGAA 69 (77)
T ss_pred CEEEeeCccc--CCCeEEEEECCeECCC-cCCCCEEEeCCCc-----eEEEeccccCCCCCCCEEEEEEEEcCCCeE
Confidence 4799999999 4559999999987743 2222333333333 677777654 37899999999999953
No 87
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.27 E-value=3.3e-11 Score=74.78 Aligned_cols=67 Identities=34% Similarity=0.590 Sum_probs=46.7
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEeecCe---EEeeecC--CCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCc
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNHNEA---IISYDSQ--RGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAK 228 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 228 (236)
|+++.|.|.+.+.| .+.+.|++++. .+..... ..+... .. ...|.|.++..+|+|.|.|.|.|..|.
T Consensus 1 G~~v~l~C~~~g~P--~p~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 72 (81)
T cd05765 1 GETASFHCDVTGRP--PPEITWEKQVHGKENLIMRPNHVRGNVVV-TN-----IGQLVIYNAQPQDAGLYTCTARNSGGL 72 (81)
T ss_pred CCcEEEEeeccccC--CCcEEEEecCCCCcceeecCCcccCCEEE-cc-----ccEEEEccCCcccCEEEEEEEecCCce
Confidence 68899999999984 45999998742 1111000 011111 11 147999999999999999999999994
No 88
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.27 E-value=5.9e-11 Score=72.67 Aligned_cols=65 Identities=22% Similarity=0.408 Sum_probs=45.9
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccC----CCCCeEEEEEeCCCCCce
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKAR----PSDNGKYQCNPANSQAKS 229 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~----~~d~G~y~C~a~n~~g~~ 229 (236)
+.|.|.+.|.| .|.+.|++++..+.. ....++.....++ +|.|..+. .+|+|.|.|.|.|..|..
T Consensus 1 ~~l~C~~~G~P--~P~v~W~k~g~~~~~-~~~~~~~~~~~~~-----~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05875 1 IIIECEAKGNP--VPTFQWTRNGKFFNV-AKDPRVSMRRRSG-----TLVIDFSGGGRPEDYEGEYQCFARNNLGTA 69 (77)
T ss_pred CEEEEeccccC--CCEEEEEECCEEccC-cCCCcEEEeCCCc-----eEEEeccCCCCCCCCCEEEEEEEEeccceE
Confidence 46999999995 459999999987642 1222333322332 78888764 246999999999999943
No 89
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.26 E-value=4.3e-11 Score=73.88 Aligned_cols=64 Identities=23% Similarity=0.467 Sum_probs=45.1
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeec-----CCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCc
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDS-----QRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAK 228 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 228 (236)
+.|.|.+.|.|. |.+.|++++....... ..++.... .+ .+|.|.++..+|.|.|.|.|.|..|.
T Consensus 1 v~l~C~~~G~P~--P~v~W~~~~~~~~~~~~~~~~~~~r~~~~-~~-----~~L~I~~v~~~D~G~Y~C~a~N~~G~ 69 (79)
T cd05734 1 VTLNCSAEGYPP--PTIVWKHSKGRGHPQHTHTCCLAGRIQLL-SN-----GSLLIKHVLEEDSGYYLCKVSNDVGA 69 (79)
T ss_pred CEeEeeCeEeCC--CEEEEEECCCccccccccccccCCCEEEe-cC-----CeEEECcCCcccCEEEEEEEEeCCCC
Confidence 479999999954 5999999643221100 11233322 22 37999999999999999999999984
No 90
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.26 E-value=1.5e-10 Score=73.52 Aligned_cols=66 Identities=27% Similarity=0.453 Sum_probs=49.2
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccC-CCCCeEEEEEeCCCCCce
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKAR-PSDNGKYQCNPANSQAKS 229 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~y~C~a~n~~g~~ 229 (236)
++++.|.|.+.+. |.+.+.|++++..+... ...... ..++ .|.|.++. .+|.|.|+|.|.|..|..
T Consensus 19 ~~~~~l~C~~~g~--p~p~i~W~k~~~~l~~~-~~~~~~--~~~~-----~L~i~~~~~~~d~G~Y~C~a~N~~G~~ 85 (91)
T cd04967 19 EGKVSLNCRARGS--PPPTYRWLMNGTEIDDE-PDSRYS--LVGG-----NLVISNPSKAKDAGRYQCLASNIVGTV 85 (91)
T ss_pred CCEEEEEEeeeEc--CCCEEEEEECCEECCCC-CCCCEE--EECC-----EEEEecCCccCCCEEEEEEEEcCCCEE
Confidence 4679999999998 45699999999877432 112222 2232 68888876 489999999999999953
No 91
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.23 E-value=1.1e-10 Score=71.44 Aligned_cols=69 Identities=23% Similarity=0.360 Sum_probs=48.3
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeec-CCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCce
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDS-QRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAKS 229 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~ 229 (236)
+.|.|.+.+. .|.+.+.|++++..+.... ...++.... ....+.|.|.++..+|+|.|.|.|.|..|..
T Consensus 1 ~~L~C~a~~~-~p~~~~~W~~~g~~i~~~~~~~~~~~~~~---~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~ 70 (76)
T cd05895 1 LVLRCETVSE-YPSLRFKWFKNGKEIGAKNKPDNKIKIRK---KKKSSELQISKASLADNGEYKCMVSSKLGND 70 (76)
T ss_pred CEEEEecccC-CCCCceEEEECCcccccCCCCCceEEEEe---CCcEEEEEECcCCcccCEEEEEEEEeCCCce
Confidence 3699998653 2556999999998875321 111222111 1134589999999999999999999999843
No 92
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.21 E-value=1.4e-10 Score=73.26 Aligned_cols=80 Identities=21% Similarity=0.384 Sum_probs=57.0
Q ss_pred CcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecC-CCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCC
Q psy10361 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQ-RGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANS 225 (236)
Q Consensus 147 ~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~ 225 (236)
..+.+.+|+++.|.|.+.+ |.+.+.|++++..+..... ..+.. .... .|.|.++..+|+|.|.|.|.+.
T Consensus 4 ~~~~v~~g~~v~L~C~~~~---p~~~i~W~k~~~~~~~~~~~~~~~~--~~~~-----~L~I~~~~~~D~G~Y~C~a~~~ 73 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS---NLASVVWLFQGGPLQRKEEPEERLL--VTED-----GLLIRSVSPADAGVYTCQSVEH 73 (89)
T ss_pred eEEEEECCCcEEEEEeCCC---CCceEEEEECCcccccccCcCceEE--EcCC-----CEEEccCCHHHCEEEEEEEecC
Confidence 3467788999999999865 3358999999876643210 11222 1222 5999999999999999999987
Q ss_pred CC----ceEEEEEcC
Q psy10361 226 QA----KSVMVNVLN 236 (236)
Q Consensus 226 ~g----~~~~~~v~~ 236 (236)
.+ .+..|.|++
T Consensus 74 ~~~~~~~~~~l~V~~ 88 (89)
T cd04979 74 GFKQTLATYSLNVLE 88 (89)
T ss_pred ccceeEeEEEEEEec
Confidence 64 556777763
No 93
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.20 E-value=3.4e-10 Score=70.59 Aligned_cols=78 Identities=26% Similarity=0.349 Sum_probs=52.1
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC-----c
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA-----K 228 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g-----~ 228 (236)
|+++.|.|.+.+. |.+.+.|.+.+...... ...............++|.|.+++.+|+|.|.|.|.|..+ .
T Consensus 1 Ge~~~l~C~~~~~--~~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~ 76 (84)
T cd05861 1 GETITVNCIVQGN--EVVDFSWTYPGKDIGKG--IPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFK 76 (84)
T ss_pred CCcEEEEEEEECC--CccEEEEEECCccCCCC--ceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeE
Confidence 7889999999997 44699999876432110 0000000111122456899999999999999999998764 4
Q ss_pred eEEEEEc
Q psy10361 229 SVMVNVL 235 (236)
Q Consensus 229 ~~~~~v~ 235 (236)
++.|.|.
T Consensus 77 sv~i~V~ 83 (84)
T cd05861 77 KVNITVH 83 (84)
T ss_pred EEEEEEe
Confidence 5566664
No 94
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.20 E-value=5.8e-10 Score=70.98 Aligned_cols=77 Identities=18% Similarity=0.359 Sum_probs=54.1
Q ss_pred CcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeec-----CCCceEEEeecCcceEEEEEEcccCCCCCeEEEEE
Q psy10361 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDS-----QRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCN 221 (236)
Q Consensus 147 ~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~ 221 (236)
.+..+..|+++.|.|.+.+.| .+.+.|++++..+.... ...++.+.... .....|.|.++..+|+|.|+|.
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~--~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~L~I~nV~~~D~G~YtC~ 80 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHD--NSSLQWSNTAQQTLYFGEKRALRDNRIQLVKST--PTELIISISNVQLSDEGEYTCS 80 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCC--CCeEEEeccCccEEEeCCeEEEeCCeEEEEeCC--CceEEEEECCCCcccCEEEEEE
Confidence 457888999999999999985 45899998876432111 11222221111 1345899999999999999999
Q ss_pred eCCCCC
Q psy10361 222 PANSQA 227 (236)
Q Consensus 222 a~n~~g 227 (236)
+.....
T Consensus 81 ~~t~~~ 86 (95)
T cd05882 81 IFTMPV 86 (95)
T ss_pred EEeecc
Confidence 988443
No 95
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.20 E-value=2.2e-10 Score=71.72 Aligned_cols=80 Identities=21% Similarity=0.305 Sum_probs=53.9
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEeecCeEEeee--cCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC---c
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYD--SQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA---K 228 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g---~ 228 (236)
|+++.|.|.+.+.+.+...+.|...+...... ....+... .......+.|.|.+++.+|+|.|+|.|.|..| .
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~--~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~ 78 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSL--QEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKN 78 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccc--cccceeeeEEEEecCCcccCEEEEEEEeecceEecc
Confidence 68899999999876566688998876543110 00000010 11112456899999999999999999999887 4
Q ss_pred eEEEEEc
Q psy10361 229 SVMVNVL 235 (236)
Q Consensus 229 ~~~~~v~ 235 (236)
+..|.|.
T Consensus 79 ~t~~~V~ 85 (86)
T cd05862 79 STIVIVH 85 (86)
T ss_pred cEEEEEe
Confidence 5556654
No 96
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.17 E-value=2.2e-10 Score=71.35 Aligned_cols=69 Identities=22% Similarity=0.403 Sum_probs=53.4
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCC
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANS 225 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~ 225 (236)
|....+..|+++.|.|.+.+ |.+.+.|++++..+.... .++. .. ++ .|.|.++..+|+|.|+|.|.+.
T Consensus 3 P~~~~v~~G~~v~L~C~~~~---~~~~i~W~~ng~~i~~~~--~r~~-~~-~~-----~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS---NLARVVWKFDGKVLTPES--AKYL-LY-RD-----GLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred cceEEEECCCCEEEEEECCC---CCCeEEEEECCEECCCCC--ceEE-EE-CC-----cEEEeCCCHHHCEEEEEEEEec
Confidence 44677889999999999753 345899999999886432 2333 22 33 6999999999999999999888
Q ss_pred C
Q psy10361 226 Q 226 (236)
Q Consensus 226 ~ 226 (236)
.
T Consensus 71 ~ 71 (87)
T cd05873 71 S 71 (87)
T ss_pred c
Confidence 5
No 97
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.16 E-value=1.2e-09 Score=69.68 Aligned_cols=79 Identities=23% Similarity=0.382 Sum_probs=54.1
Q ss_pred CcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEee-e----cCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEE
Q psy10361 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISY-D----SQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCN 221 (236)
Q Consensus 147 ~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~ 221 (236)
.++.+.+|+++.|.|.+.+.| .+.+.|++.+..+.. . ...+++..... .....+|.|.+++.+|+|.|.|.
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p--~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~--~~~~~sL~I~~v~~~DsG~Y~C~ 80 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQND--NTSLQWSNPAQQTLYFDDKKALRDNRIELVRA--SWHELSISISDVSLSDEGQYTCS 80 (95)
T ss_pred ceEEEecCCcEEEEEEEecCC--ceEEEEeCCCCeEEEEcCcccccCCCEEEEEC--CCCcEEEEECcCCcccCEEEEEE
Confidence 467889999999999999884 458999865433211 1 11223332111 11335899999999999999999
Q ss_pred eCCCCCce
Q psy10361 222 PANSQAKS 229 (236)
Q Consensus 222 a~n~~g~~ 229 (236)
+.+..+.+
T Consensus 81 ~~t~~~~~ 88 (95)
T cd07701 81 LFTMPVKT 88 (95)
T ss_pred eEeecCcc
Confidence 99865533
No 98
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.14 E-value=3.5e-10 Score=70.78 Aligned_cols=73 Identities=25% Similarity=0.380 Sum_probs=53.2
Q ss_pred EEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCc
Q psy10361 149 VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAK 228 (236)
Q Consensus 149 ~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 228 (236)
..+..|+.+.|.|.+.+. |.+.+.|++++..+.... .... .........|.|.++..+|.|.|.|.+.|..|.
T Consensus 4 ~~~~~G~~~~l~C~~~~~--p~~~v~W~k~~~~~~~~~---~~~~--~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~ 76 (85)
T cd05729 4 HAVPAGSTVRLKCPASGN--PRPTITWLKDGKPFKKEH---RIGG--YKVRKKKWTLILESVVPSDSGKYTCIVENKYGS 76 (85)
T ss_pred eEecCCCcEEEEEEcCCC--CCCeEEEEECCEECcccC---ceeE--EEccCcEEEEEEeECCcccCEEEEEEEEECCce
Confidence 345679999999999988 445899999987764311 1111 111112347999999999999999999999984
No 99
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.14 E-value=2.3e-10 Score=71.07 Aligned_cols=65 Identities=22% Similarity=0.307 Sum_probs=50.3
Q ss_pred cEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 148 EVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 148 ~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
...+.+|+++.|.|.+.... +...+.|++++..+.... ....|.|.+++.+|+|.|.|.+.+..|
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~-~~~~~~w~k~g~~~~~~~--------------~~~~l~I~~~~~~dsG~Y~C~~~~~~~ 72 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNK-PVYKVTYYRDGKAKKYSH--------------SNSNLSIPQATLSDSGSYHCSGIIGSY 72 (83)
T ss_pred cceecCCCCEEEEeeCCCCC-cceEEEEEECCeEccccC--------------CCceEEECccCHHHCEEEEEEEEeCCc
Confidence 34678999999999985421 445899999987653210 113799999999999999999999996
No 100
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.12 E-value=4.4e-10 Score=71.08 Aligned_cols=69 Identities=17% Similarity=0.263 Sum_probs=52.2
Q ss_pred EEEecCCeEEEEeEEeeCCC---CCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCC
Q psy10361 149 VFIENGSTINLTCVVRFSPE---PPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANS 225 (236)
Q Consensus 149 ~~~~~g~~~~l~C~~~~~p~---p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~ 225 (236)
..+..|+++.|.|...+.+. |.+.+.|++++.++... +.... .+ ..|.|.++..+|+|.|+|.|.|.
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~----~~~~~-~~-----~~L~I~~v~~~DsG~YtC~~~n~ 74 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD----RKRFV-KG-----SKLLIQNVTEEDAGNYTCKLTFT 74 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCC----ccEEe-cC-----CEEEEeeCChhhCEEEEEEEEec
Confidence 45678999999998754321 45699999999887531 11111 22 27999999999999999999999
Q ss_pred CC
Q psy10361 226 QA 227 (236)
Q Consensus 226 ~g 227 (236)
.+
T Consensus 75 ~~ 76 (92)
T cd05757 75 HN 76 (92)
T ss_pred CC
Confidence 86
No 101
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.09 E-value=6.9e-10 Score=69.45 Aligned_cols=70 Identities=17% Similarity=0.347 Sum_probs=53.3
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCC
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANS 225 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~ 225 (236)
+....+.+|++++|.|.+.+.+ |.+.+.|++++..+.. +. ...+ ..|.|.++..+|+|.|.|.|.|.
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~-~~~~i~W~~~~~~~~~-----~~--~~~~-----~~L~I~~v~~~DsG~Y~C~a~n~ 74 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKS-PAYTLVWTRVGGGLPS-----RA--MDFN-----GILTIRNVQLSDAGTYVCTGSNM 74 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCC-CCcEEEEEECCCcCCC-----cc--cccC-----CEEEECCCCHHHCEEEEEEEecc
Confidence 4456788999999999997532 5569999998865421 11 1112 37999999999999999999999
Q ss_pred CCc
Q psy10361 226 QAK 228 (236)
Q Consensus 226 ~g~ 228 (236)
.|.
T Consensus 75 ~g~ 77 (85)
T cd05754 75 LDT 77 (85)
T ss_pred CCe
Confidence 984
No 102
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.08 E-value=4.7e-10 Score=70.89 Aligned_cols=72 Identities=28% Similarity=0.355 Sum_probs=54.2
Q ss_pred cEEEecCCeEEEEeEE-eeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 148 EVFIENGSTINLTCVV-RFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 148 ~~~~~~g~~~~l~C~~-~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
...+.+|+.+.|.|.. .+. |.+.+.|++++..+... ...+......+| .|.+.+++.+|.|.|.|.|.|..
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~--P~p~~~W~k~~~~~~~~-~d~r~~~~~~~G-----~L~fs~v~~~D~g~Y~C~A~n~~ 83 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHY--PDLSYRWLLNEFPNFIP-EDGRRFVSQTNG-----NLYIAKVEASDRGNYSCFVSSPS 83 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCC--CCCEEEEEECCcccccc-cCCCeEEeCCCC-----cEEEeecCHhhCceeEEEEEecc
Confidence 4678889999999966 556 55699999998654321 122333433344 79999999999999999999997
Q ss_pred C
Q psy10361 227 A 227 (236)
Q Consensus 227 g 227 (236)
+
T Consensus 84 ~ 84 (96)
T cd05727 84 S 84 (96)
T ss_pred c
Confidence 5
No 103
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.08 E-value=1.2e-09 Score=63.80 Aligned_cols=63 Identities=25% Similarity=0.454 Sum_probs=47.8
Q ss_pred cCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 153 NGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 153 ~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
+|+++.|.|.+.+. |.+.+.|++++..+. ......... ..|.|.++..+|.|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~-----~~~~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGD--PVPNITWLKDGKPLP-----ESNRLSASG-----STLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccC--CCCeEEEEECCEECC-----CCCEEecCC-----cEEEEeeCCcccCEEEEEEEecCCC
Confidence 47899999998776 455899999887764 111111222 3799999999999999999999865
No 104
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.05 E-value=2.4e-09 Score=79.21 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=53.7
Q ss_pred ceEEEEcCCCCCCCeeEEEEEEEEecce----------------------eEEe-----------cceeeEEecCCcEEE
Q psy10361 35 DWTLQLKYPQHKDTGIYECQVSFVRHRD----------------------IHLL-----------TTGRYTYTNDQRFRV 81 (236)
Q Consensus 35 ~~~L~i~~~~~~D~G~Y~C~v~~~~~~~----------------------~~~~-----------~~~~~~~~~~~~~~~ 81 (236)
+.+|.|.+++.+|+|.|.|++.+..+.. ..+. +...+.|.+++....
T Consensus 97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~ 176 (227)
T PHA02826 97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVL 176 (227)
T ss_pred CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECC
Confidence 5699999999999999999998733210 0110 123567777664332
Q ss_pred EcCC---CCCcEEEEEcCCCCCCCEEEEEEeecCC
Q psy10361 82 INNP---TSDDWTLQLKYPQHKDTGIYECQVSTTP 113 (236)
Q Consensus 82 ~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 113 (236)
.... ...+..|.|.+++.+|+|.|+|.+....
T Consensus 177 ~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 177 YTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred CCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 1110 0134589999999999999999998753
No 105
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.01 E-value=3e-09 Score=67.37 Aligned_cols=77 Identities=16% Similarity=0.292 Sum_probs=51.1
Q ss_pred EEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeec-----------CCCceEEEeecCcceEEEEEEcccCCCCCeE
Q psy10361 149 VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDS-----------QRGGVNVITEKGETTVSYLLIQKARPSDNGK 217 (236)
Q Consensus 149 ~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 217 (236)
+.+..|++++|.|.+.+. +.+.+.|++++....... ...+.............+|+|.+++.+|+|.
T Consensus 2 v~~~~G~~VtL~C~~s~~--~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgt 79 (94)
T cd07690 2 VLGKKGDTAELPCTASQK--KSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDT 79 (94)
T ss_pred eEeeCCCCEEEEEEeCCC--CCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEE
Confidence 346789999999999877 456999997653321100 0111111111001234679999999999999
Q ss_pred EEEEeCCCCC
Q psy10361 218 YQCNPANSQA 227 (236)
Q Consensus 218 y~C~a~n~~g 227 (236)
|.|.+.|..+
T Consensus 80 Y~C~v~~~~~ 89 (94)
T cd07690 80 YICEVEDKKE 89 (94)
T ss_pred EEEEECCccc
Confidence 9999999875
No 106
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.01 E-value=1.1e-08 Score=65.31 Aligned_cols=80 Identities=18% Similarity=0.383 Sum_probs=53.2
Q ss_pred CcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEee-ec----CCCceEEEeecCcceEEEEEEcccCCCCCeEEEEE
Q psy10361 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISY-DS----QRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCN 221 (236)
Q Consensus 147 ~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~ 221 (236)
+.+.+.+|+++.|.|.+.+.+ .+.+.|++.+..+.. .. ...+....... .....|.|.+++.+|+|.|.|.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~L~I~~v~~~DsG~Y~C~ 80 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNND--NSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFS--ANELSISISNVSLSDEGRYTCS 80 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCC--CceEEEeCCCCcEEEeccccccccCcEEEEcCC--CCeeEEEEccCCcccCEEEEEE
Confidence 456788999999999998774 348999864332211 00 11233322111 1235799999999999999999
Q ss_pred eCCCCCceE
Q psy10361 222 PANSQAKSV 230 (236)
Q Consensus 222 a~n~~g~~~ 230 (236)
+.+....+.
T Consensus 81 ~~~~~~~~~ 89 (95)
T cd05717 81 LYTMPVQTA 89 (95)
T ss_pred EecCCCceE
Confidence 998765333
No 107
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.97 E-value=7.9e-09 Score=65.30 Aligned_cols=77 Identities=21% Similarity=0.332 Sum_probs=50.5
Q ss_pred EEEecCCeEEEEeEEeeCCCCCCeEEEeecCe--EEeeec-CCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCC-
Q psy10361 149 VFIENGSTINLTCVVRFSPEPPAYIFWNHNEA--IISYDS-QRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPAN- 224 (236)
Q Consensus 149 ~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n- 224 (236)
+...+|+++.|.|.. +. |.+.+.|++... ...... ...+... .. ..|.|.++..+|+|.|+|.+.|
T Consensus 6 ~~~~eG~~v~L~C~~-~~--p~p~v~Wykq~~g~~~~~~~~~~~r~~~--~~-----~~L~I~~~~~~DsG~Y~C~a~~~ 75 (91)
T cd05871 6 VYGVENNSTFLECLP-KS--PQASVKWLFQRGGDQRKEEVKTEERLIH--TE-----RGLLLRSLQRSDAGVYTCTAVEH 75 (91)
T ss_pred EEEecCCcEEEEEEC-CC--CCceEEEEEECCCCCccccccccccEEE--ec-----CeEEEeeCChhHCEEEEEEEEcc
Confidence 456789999999996 45 556999998432 111100 1112221 12 2699999999999999999974
Q ss_pred CCC---ceEEEEEc
Q psy10361 225 SQA---KSVMVNVL 235 (236)
Q Consensus 225 ~~g---~~~~~~v~ 235 (236)
..+ ..++|.|+
T Consensus 76 ~~~~~~~~~~l~v~ 89 (91)
T cd05871 76 SFSQTLAKYTLHVI 89 (91)
T ss_pred CCeEEEEEEEEEEe
Confidence 555 34566665
No 108
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.96 E-value=5.1e-09 Score=61.68 Aligned_cols=63 Identities=30% Similarity=0.565 Sum_probs=42.4
Q ss_pred CCeEEEEeEE-eeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEe
Q psy10361 154 GSTINLTCVV-RFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNP 222 (236)
Q Consensus 154 g~~~~l~C~~-~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a 222 (236)
|+.+.|.|.+ .+. +...+.|++++....... ..............|.|.++..+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~--~~~~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGP--PPTTVTWSKNGQSLPEGS----TTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESS--STSEEEEEETTTTTSEEE----EEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCC--CCcEEEEEECCccccCcc----eeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 444 557999999986543211 11111111111124999999999999999986
No 109
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.94 E-value=3.3e-09 Score=67.06 Aligned_cols=72 Identities=15% Similarity=0.299 Sum_probs=50.9
Q ss_pred EEEecCCeEEEEeEE-eeC--CCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCC
Q psy10361 149 VFIENGSTINLTCVV-RFS--PEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANS 225 (236)
Q Consensus 149 ~~~~~g~~~~l~C~~-~~~--p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~ 225 (236)
..+..|.+..|.|+- .+. +.+.+.+.|++++.++..... +....... ..|.|.++..+|+|.|+|.|.+.
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~--~~~~~~~~-----~~L~I~~v~~~D~G~YtC~~~~~ 77 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNE--KFYSLKGS-----TYLHIIDVSLNDSGYYTCKLQFT 77 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCc--ceEecCCC-----CEEEEEEcChhhCEEEEEEEEEe
Confidence 456678899999973 233 335569999999988753211 11111112 26999999999999999999999
Q ss_pred CC
Q psy10361 226 QA 227 (236)
Q Consensus 226 ~g 227 (236)
.|
T Consensus 78 ~~ 79 (95)
T cd05897 78 HE 79 (95)
T ss_pred eC
Confidence 75
No 110
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.93 E-value=6.1e-09 Score=65.71 Aligned_cols=73 Identities=19% Similarity=0.374 Sum_probs=55.4
Q ss_pred CcEEEecCCeEEEEeE-EeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCe-EEEEEeCC
Q psy10361 147 PEVFIENGSTINLTCV-VRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNG-KYQCNPAN 224 (236)
Q Consensus 147 ~~~~~~~g~~~~l~C~-~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~y~C~a~n 224 (236)
....+.+|+.+.|.|. ..+.|. +.+.|+.++..... ...++... .+| .|.|.+++.+|.| .|.|.|.|
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~--P~i~W~~~~~~~i~--~~~Ri~~~-~~G-----nL~fs~v~~~D~g~~Y~C~a~~ 80 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVP--LRIYWMNSDLLHIT--QDERVSMG-QNG-----NLYFANVEEQDSHPDYICHAHF 80 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCC--CEEEEECCCCcccc--ccccEEEC-CCc-----eEEEEEEehhhCCCCeEEEEEc
Confidence 4678899999999997 588854 59999987654332 23344433 334 7999999999999 89999999
Q ss_pred CCCce
Q psy10361 225 SQAKS 229 (236)
Q Consensus 225 ~~g~~ 229 (236)
....+
T Consensus 81 ~~~~~ 85 (95)
T cd05845 81 PGLRT 85 (95)
T ss_pred ccccc
Confidence 98644
No 111
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.91 E-value=3.5e-08 Score=62.54 Aligned_cols=79 Identities=22% Similarity=0.331 Sum_probs=58.8
Q ss_pred CcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 147 ~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
..+.+.+|+++.|.|.+.++|.| ..+.|.+++..+..... ..............+.|.+..+..+|+|.|+|.|.|..
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p-~~~~W~~~~~~l~~~~~-~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~ 88 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKP-EHQQWIYMNRTLTNTSD-HYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSD 88 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCC-eeeEEEcCCcccCcccc-ceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCC
Confidence 45778999999999999999643 23999999877643222 11221111223467899999999999999999999998
Q ss_pred C
Q psy10361 227 A 227 (236)
Q Consensus 227 g 227 (236)
.
T Consensus 89 ~ 89 (101)
T cd05860 89 A 89 (101)
T ss_pred C
Confidence 6
No 112
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.90 E-value=1.1e-08 Score=63.08 Aligned_cols=61 Identities=33% Similarity=0.660 Sum_probs=48.8
Q ss_pred EEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 149 VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 149 ~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
..+..|+++.|.|.+.+. |...+.|++++..+... . + .+.+..+..+|.|.|.|.+.+..+
T Consensus 9 ~~v~~g~~~~l~C~~~~~--p~~~~~w~~~~~~~~~~-~---------~------~~~~~~~~~~~~g~y~C~~~~~~~ 69 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGN--PPPQVQWYKNGSPINSS-Q---------N------GLFIPNVSPEDSGNYTCRASNGSG 69 (80)
T ss_dssp SEEETTSEEEEEEEEESS--SSSEEEEEETTEEEEEE-S---------S------EEEESSEEGGGTEEEEEEEEETTE
T ss_pred eEEeCCCcEEEEEEEEcc--cceeeeeeeeeeeeeee-e---------e------eeeeeeeccccCEEEEEEEEeCCC
Confidence 457889999999999977 44699999998776521 1 1 266788899999999999999765
No 113
>smart00409 IG Immunoglobulin.
Probab=98.89 E-value=9.5e-08 Score=59.23 Aligned_cols=72 Identities=29% Similarity=0.595 Sum_probs=54.3
Q ss_pred cEEEecCCeEEEEeEEeeCCCCCCeEEEeec-CeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 148 EVFIENGSTINLTCVVRFSPEPPAYIFWNHN-EAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 148 ~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
...+..|+++.|.|.+.+. +.+.+.|+++ +..+. ...+........ ...|.|.++..+|+|.|.|.+.+..
T Consensus 3 ~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~~~~v~---~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~v~~~~ 74 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGS--PPPEVTWYKQGGKLLA---ESGRFSVSRSGS---NSTLTISNVTPEDSGTYTCAATNSS 74 (86)
T ss_pred cEEEeCCCeEEEEEEEccC--CCCeEEEEECCCEEcC---CCCcEEEEEcCC---eeEEEEEeeccccCeEEEEEEEcCC
Confidence 3566789999999999887 5569999998 66553 122333333321 4579999999999999999999887
Q ss_pred C
Q psy10361 227 A 227 (236)
Q Consensus 227 g 227 (236)
+
T Consensus 75 ~ 75 (86)
T smart00409 75 G 75 (86)
T ss_pred C
Confidence 6
No 114
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.89 E-value=9.5e-08 Score=59.23 Aligned_cols=72 Identities=29% Similarity=0.595 Sum_probs=54.3
Q ss_pred cEEEecCCeEEEEeEEeeCCCCCCeEEEeec-CeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 148 EVFIENGSTINLTCVVRFSPEPPAYIFWNHN-EAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 148 ~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
...+..|+++.|.|.+.+. +.+.+.|+++ +..+. ...+........ ...|.|.++..+|+|.|.|.+.+..
T Consensus 3 ~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~~~~v~---~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~v~~~~ 74 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGS--PPPEVTWYKQGGKLLA---ESGRFSVSRSGS---NSTLTISNVTPEDSGTYTCAATNSS 74 (86)
T ss_pred cEEEeCCCeEEEEEEEccC--CCCeEEEEECCCEEcC---CCCcEEEEEcCC---eeEEEEEeeccccCeEEEEEEEcCC
Confidence 3566789999999999887 5569999998 66553 122333333321 4579999999999999999999887
Q ss_pred C
Q psy10361 227 A 227 (236)
Q Consensus 227 g 227 (236)
+
T Consensus 75 ~ 75 (86)
T smart00410 75 G 75 (86)
T ss_pred C
Confidence 6
No 115
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.88 E-value=1.2e-08 Score=62.22 Aligned_cols=66 Identities=17% Similarity=0.279 Sum_probs=47.9
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
++|+|...+. .|++.+.|++++.++..... ...........++|.+......|++.|+|.|.|+.+
T Consensus 2 ~~L~C~s~~s-kP~a~i~W~k~~~~l~~~~~----~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~ 67 (80)
T cd05885 2 VELTCLSPRS-KPAATLRWYRDRKELKGVIS----QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPAL 67 (80)
T ss_pred EEEEEeCCCc-cCCCeEEEEECCEECCCCcc----cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhh
Confidence 6899998653 47789999999998853211 001111123456799988888999999999999986
No 116
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.87 E-value=1.2e-07 Score=59.99 Aligned_cols=82 Identities=13% Similarity=0.232 Sum_probs=56.4
Q ss_pred CcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeee-----cCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEE
Q psy10361 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYD-----SQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCN 221 (236)
Q Consensus 147 ~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~ 221 (236)
.++.+.+|+++.|.|.+.+... ..+.|++.+..+... ....+....... ....+|.|.+++.+|+|.|.|.
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~--~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~--~~~~tL~I~~vq~~D~G~Y~Cq 80 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDD--SVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFS--SNELRVSLSNVSLSDEGRYFCQ 80 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCc--cEEEEEecCCcEEEecCccccCCcCEEEEeCC--CCEEEEEECcCCcccCEEEEEE
Confidence 3577889999999999987643 368898777443211 112244433212 2456799999999999999999
Q ss_pred eCCCCCceEEE
Q psy10361 222 PANSQAKSVMV 232 (236)
Q Consensus 222 a~n~~g~~~~~ 232 (236)
+......+..+
T Consensus 81 v~t~p~~~~~~ 91 (95)
T cd05881 81 LYTDPPQEAYT 91 (95)
T ss_pred EEcccCeEEEE
Confidence 98776544443
No 117
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.85 E-value=2.8e-08 Score=61.67 Aligned_cols=68 Identities=26% Similarity=0.436 Sum_probs=45.6
Q ss_pred eEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecC-cceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 156 TINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKG-ETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 156 ~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
++.|.|.+.+. .|.+.+.|++++..+.... .......... ....+.|.+.....+|.|.|+|.|.|..
T Consensus 1 ~~~L~C~v~g~-~P~~~v~W~~~g~~l~~~~--~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~ 69 (82)
T cd05759 1 PYNLTCRARGA-KPAAEIIWFRDGEVLDGAT--YSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEA 69 (82)
T ss_pred CEEEEEEEeCc-cCCCEEEEEECCEEccCce--eeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCcc
Confidence 36899999874 1445999999998774311 1111112211 2334678888777788899999999987
No 118
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.79 E-value=1.7e-07 Score=61.83 Aligned_cols=81 Identities=17% Similarity=0.295 Sum_probs=53.6
Q ss_pred CCcEEEecCCeEEEEeEEeeCC--CCCCeEEEeec---------------CeEEee--ecCCCceEEEeecCcceEEEEE
Q psy10361 146 GPEVFIENGSTINLTCVVRFSP--EPPAYIFWNHN---------------EAIISY--DSQRGGVNVITEKGETTVSYLL 206 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p--~p~~~v~W~~~---------------~~~~~~--~~~~~~~~~~~~~~~~~~~~L~ 206 (236)
++.+.+..|+++.|.|...... .+...+.|... +..... ..-++|+.+..+. .....+|.
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~-~~~daSI~ 83 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNP-SRKDGSIV 83 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCC-CcCeeEEE
Confidence 3456778899999999997642 23458999432 222110 0112344433222 33556899
Q ss_pred EcccCCCCCeEEEEEeCCCCC
Q psy10361 207 IQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 207 i~~v~~~d~G~y~C~a~n~~g 227 (236)
|.+++.+|.|.|+|.+.|+-+
T Consensus 84 I~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 84 IHNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred EccCCcccCEEEEEEEEcCCC
Confidence 999999999999999999874
No 119
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.74 E-value=8.5e-08 Score=59.31 Aligned_cols=63 Identities=24% Similarity=0.394 Sum_probs=48.9
Q ss_pred cEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeC
Q psy10361 148 EVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPA 223 (236)
Q Consensus 148 ~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~ 223 (236)
...+..|+++.|.|...+. .+.+.|++++..+..+ .++.. ... -|.|..+..+|+|.|.|.+.
T Consensus 5 ~~tv~~g~~v~L~C~~~s~---~A~v~W~~ng~~l~~~---~r~~~-~~~------GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN---LASPVWLFNGTPLNAQ---FSYRV-GTD------GLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred EEEEecCCCEEEECCCCCC---CccEEEEECCcccCCC---cceEE-eCC------CCEEEECCHhhCEEEEEEEe
Confidence 4678889999999999764 3499999999987432 23332 333 38899999999999999976
No 120
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.70 E-value=2.4e-07 Score=60.78 Aligned_cols=78 Identities=24% Similarity=0.413 Sum_probs=53.3
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeE-----Eeee------cCCCceEEEeecCcceEEEEEEcccCCCC
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAI-----ISYD------SQRGGVNVITEKGETTVSYLLIQKARPSD 214 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~-----~~~~------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d 214 (236)
+..+.+.+|++++|.|.+.+. +...+.|++.... +... ...++..+.... .....+|.|.+++.+|
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~--~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~-~~~~~~L~I~~~~~~D 81 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTS--TFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDK-SRKSSSLHISAAQLSD 81 (109)
T ss_pred CCceEEcCCCCEEEEEEECCC--CccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcc-cCCEEEEEECCCCHHH
Confidence 345678899999999999876 4458999985321 1110 112334333222 2345789999999999
Q ss_pred CeEEEEEeCCCC
Q psy10361 215 NGKYQCNPANSQ 226 (236)
Q Consensus 215 ~G~y~C~a~n~~ 226 (236)
+|.|.|.+.+..
T Consensus 82 sG~Y~C~~~~~~ 93 (109)
T cd04983 82 SAVYFCALSESG 93 (109)
T ss_pred CEEEEEEEecCC
Confidence 999999998763
No 121
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.68 E-value=4.6e-07 Score=57.39 Aligned_cols=50 Identities=32% Similarity=0.515 Sum_probs=39.1
Q ss_pred EEecCCcEEEEcCCCCCcEEEEEcCCCCCCCEEEEEEeecCCCceeEEEEE
Q psy10361 72 TYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLT 122 (236)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~ 122 (236)
.+..+.|+..... ....++|.|.+++.+|+|.|.|.+...+..+..+.+.
T Consensus 45 ~~~~d~Rf~~~~~-~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p~~~~~~~~~ 94 (95)
T cd05881 45 RPLKDSRFQLVNF-SSNELRVSLSNVSLSDEGRYFCQLYTDPPQEAYTTIT 94 (95)
T ss_pred cccCCcCEEEEeC-CCCEEEEEECcCCcccCEEEEEEEEcccCeEEEEEEE
Confidence 4457888887642 3468899999999999999999999877776555554
No 122
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.67 E-value=2.6e-07 Score=58.83 Aligned_cols=74 Identities=18% Similarity=0.300 Sum_probs=49.5
Q ss_pred EEEecCCeEEEEeEEe------eCC---CCCCeEEEeecCeEEeeecC--CCceEEEeecCcceEEEEEEcccCCCCCeE
Q psy10361 149 VFIENGSTINLTCVVR------FSP---EPPAYIFWNHNEAIISYDSQ--RGGVNVITEKGETTVSYLLIQKARPSDNGK 217 (236)
Q Consensus 149 ~~~~~g~~~~l~C~~~------~~p---~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 217 (236)
..+.+|+.+.|.|..- +++ .+...+.|++++..+....+ .........+ ..|.|.++..+|+|.
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~-----~~Lwf~Pa~~eDSG~ 84 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE-----DSIWFRPAELQDSGL 84 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC-----CEEEEEeCChhhCeE
Confidence 5677899999999861 110 12237999999755533221 0101222223 279999999999999
Q ss_pred EEEEeCCCCC
Q psy10361 218 YQCNPANSQA 227 (236)
Q Consensus 218 y~C~a~n~~g 227 (236)
|+|.+.|.-.
T Consensus 85 Y~C~~rN~t~ 94 (104)
T cd05896 85 YTCVLRNSTY 94 (104)
T ss_pred EEEEECCCCc
Confidence 9999999985
No 123
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.67 E-value=2.5e-07 Score=56.65 Aligned_cols=66 Identities=23% Similarity=0.289 Sum_probs=45.9
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
+.|.|.+.|. .|++.|.|++++.++.... ...-...++....++|.+..-...|+..|+|.|.|+.
T Consensus 2 ~~L~C~s~gS-kP~A~I~W~k~~~~l~~~~---~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 2 IELNCTAMAS-KPAATIRWFKGNKELTGKS---TVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred EEEEEEecCC-CCCCEEEEEECCEECcCcc---cceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence 6899999774 4778999999998885321 1111223445567788886555555559999999976
No 124
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.64 E-value=4.3e-07 Score=59.68 Aligned_cols=75 Identities=19% Similarity=0.360 Sum_probs=50.1
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCe--E---Eeee----------cCCCceEEEeecCcceEEEEEEccc
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEA--I---ISYD----------SQRGGVNVITEKGETTVSYLLIQKA 210 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~--~---~~~~----------~~~~~~~~~~~~~~~~~~~L~i~~v 210 (236)
+..+.+.+|++++|.|.+.+ + ...+.|++... . +... ....+...... .....+|.|.++
T Consensus 5 p~~~~v~~G~~v~l~C~~~~-~--~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~L~I~~~ 79 (110)
T cd05899 5 PRYLIKGRGQSVTLRCSQTS-G--HDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRP--SLTRSSLTIKSA 79 (110)
T ss_pred CCceEEcCCCcEEEEEEECC-C--CCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECc--CCCccEEEECCC
Confidence 44578889999999999976 3 34899998542 1 1110 00122222111 114568999999
Q ss_pred CCCCCeEEEEEeCCC
Q psy10361 211 RPSDNGKYQCNPANS 225 (236)
Q Consensus 211 ~~~d~G~y~C~a~n~ 225 (236)
+.+|+|.|.|.+.+.
T Consensus 80 ~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 80 EPEDSAVYLCASSLG 94 (110)
T ss_pred ChhhCEEEEEEeeCC
Confidence 999999999999875
No 125
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.63 E-value=1.3e-07 Score=59.82 Aligned_cols=67 Identities=12% Similarity=0.278 Sum_probs=48.4
Q ss_pred CcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCC
Q psy10361 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANS 225 (236)
Q Consensus 147 ~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~ 225 (236)
+...+..|++++|.|.... +...+.|+++|....... .........+.|.+++.+|+|.|+|...+.
T Consensus 9 p~~vV~~G~~VtL~C~~~~---~~~~f~l~k~g~~~~~~~---------~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 9 PSSVVPLGKPVTLRCQGPY---GAVEYRLYREGSTFAVKK---------PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCCccCCCCcEEEEEecCC---CCCEEEEEECCCCccccc---------cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 3456789999999998853 445899999886532110 001123357999999999999999999886
No 126
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.60 E-value=9e-07 Score=56.31 Aligned_cols=77 Identities=21% Similarity=0.333 Sum_probs=47.2
Q ss_pred CCCCeeEEEEEE--------EEecceeEEecceeeEEecCCcEEEEcCCCCCcEEEEEcCCCCCCCEEEEEEeecCCCce
Q psy10361 45 HKDTGIYECQVS--------FVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA 116 (236)
Q Consensus 45 ~~D~G~Y~C~v~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 116 (236)
.+|+..+.|.+. |.+.... ++..+......+.|+.+.... ...+.|.|.+++.+|+|.|+|.+......+
T Consensus 11 ~G~tv~L~C~v~g~~~~~v~W~k~~~~-~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~nV~~~D~G~YtC~~~t~~~~~ 88 (95)
T cd05882 11 VGGTVTLKCGVKEHDNSSLQWSNTAQQ-TLYFGEKRALRDNRIQLVKST-PTELIISISNVQLSDEGEYTCSIFTMPVRT 88 (95)
T ss_pred cCCcEEEEEEEeCCCCCeEEEeccCcc-EEEeCCeEEEeCCeEEEEeCC-CceEEEEECCCCcccCEEEEEEEEeecccc
Confidence 456666677554 4443221 112222233345565543322 246899999999999999999999866666
Q ss_pred eEEEEEE
Q psy10361 117 HYIYLTV 123 (236)
Q Consensus 117 ~~~~l~v 123 (236)
+.+.|.|
T Consensus 89 ~~~~~~v 95 (95)
T cd05882 89 AKATVTV 95 (95)
T ss_pred EEEEEEC
Confidence 6565543
No 127
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.59 E-value=8.9e-07 Score=57.74 Aligned_cols=82 Identities=23% Similarity=0.395 Sum_probs=50.9
Q ss_pred cCCeEEEEeEEeeCC----CCCCeEEEeecC-----e-EEeeec-------CCCceEEEeecCcceEEEEEEcccCCCCC
Q psy10361 153 NGSTINLTCVVRFSP----EPPAYIFWNHNE-----A-IISYDS-------QRGGVNVITEKGETTVSYLLIQKARPSDN 215 (236)
Q Consensus 153 ~g~~~~l~C~~~~~p----~p~~~v~W~~~~-----~-~~~~~~-------~~~~~~~~~~~~~~~~~~L~i~~v~~~d~ 215 (236)
.|++++|.|.....+ .....+.|++.. . .+.... ...+..+..........+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999987653 124589999862 1 111100 01111111111122457899999999999
Q ss_pred eEEEEEeCCCCC---ceEEEEE
Q psy10361 216 GKYQCNPANSQA---KSVMVNV 234 (236)
Q Consensus 216 G~y~C~a~n~~g---~~~~~~v 234 (236)
|.|.|.+.+..+ ..+.|.|
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V 102 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEV 102 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEE
Confidence 999999998876 3445554
No 128
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.59 E-value=9.6e-07 Score=57.90 Aligned_cols=82 Identities=22% Similarity=0.344 Sum_probs=51.4
Q ss_pred cCCeEEEEeEEeeCCCC--------CCeEEEeecC--eEE--e---------eecCCCceEEEeecCcceEEEEEEcccC
Q psy10361 153 NGSTINLTCVVRFSPEP--------PAYIFWNHNE--AII--S---------YDSQRGGVNVITEKGETTVSYLLIQKAR 211 (236)
Q Consensus 153 ~g~~~~l~C~~~~~p~p--------~~~v~W~~~~--~~~--~---------~~~~~~~~~~~~~~~~~~~~~L~i~~v~ 211 (236)
.|+++.|.|.....+.+ ...+.|++.. ... . ...-++|..+..........+|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 38899999999765321 3579999852 111 1 0011234343222222344689999999
Q ss_pred CCCCeEEEEEeCCCCC---ceEEEEE
Q psy10361 212 PSDNGKYQCNPANSQA---KSVMVNV 234 (236)
Q Consensus 212 ~~d~G~y~C~a~n~~g---~~~~~~v 234 (236)
.+|+|.|.|.+..... ..+.|.|
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V 106 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEV 106 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEE
Confidence 9999999999987643 4555555
No 129
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.59 E-value=9.3e-07 Score=57.65 Aligned_cols=73 Identities=22% Similarity=0.423 Sum_probs=47.8
Q ss_pred cCCeEEEEeEEeeCC----CCCCeEEEeecCe------EEeee---------cCCCceEEEeecCcceEEEEEEcccCCC
Q psy10361 153 NGSTINLTCVVRFSP----EPPAYIFWNHNEA------IISYD---------SQRGGVNVITEKGETTVSYLLIQKARPS 213 (236)
Q Consensus 153 ~g~~~~l~C~~~~~p----~p~~~v~W~~~~~------~~~~~---------~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 213 (236)
.|++++|.|.....| .....+.|++... .+... ...+++.+... .....+|.|.+++.+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~--~~~~~sL~I~~v~~~ 78 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRA--HDLDASLVITDLRLE 78 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCC--CCCcEEEEEccCChH
Confidence 489999999987653 1234799998531 11110 01123333211 123468999999999
Q ss_pred CCeEEEEEeCCCCC
Q psy10361 214 DNGKYQCNPANSQA 227 (236)
Q Consensus 214 d~G~y~C~a~n~~g 227 (236)
|+|.|.|.+.+..+
T Consensus 79 DsG~Y~C~v~~~~~ 92 (106)
T cd05877 79 DYGRYRCEVIDGLE 92 (106)
T ss_pred HCEEEEEEEEeccc
Confidence 99999999998887
No 130
>PHA03376 BARF1; Provisional
Probab=98.57 E-value=1.7e-05 Score=55.54 Aligned_cols=89 Identities=19% Similarity=0.298 Sum_probs=52.6
Q ss_pred ecCCcEEEEcCCCCCcEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEEEEEEeeCCcccccCCCcccccCCCcEEEe
Q psy10361 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIE 152 (236)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (236)
.+.+++.+.... ++.+|.|.+++.+|.|.|+|.++...... ....|++. .| -...+.. ......
T Consensus 73 EyRGrtD~~~~~--gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V-----------~~-~~Lsv~a-~~~dFp 137 (221)
T PHA03376 73 PFRGFFDIHRSA--NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV-----------KP-LTLSVHS-ERSQFP 137 (221)
T ss_pred ccccEEEEEecC--CeEEEEEEeeeecCCceEEEEEEcCCCceeeeeeeeee-----------ec-ceEEEEe-ccccCC
Confidence 344555554332 78899999999999999999997755322 33334443 00 0000000 000001
Q ss_pred cCCeEEEEeEEeeCCCCCCeEEEeecC
Q psy10361 153 NGSTINLTCVVRFSPEPPAYIFWNHNE 179 (236)
Q Consensus 153 ~g~~~~l~C~~~~~p~p~~~v~W~~~~ 179 (236)
.-+...+.|...|.|.| .+.|.-+.
T Consensus 138 ~~~~~~i~C~sggfP~P--~~~Wle~~ 162 (221)
T PHA03376 138 DFSVLTVTCTVNAFPHP--HVQWLMPE 162 (221)
T ss_pred CCCeeEEEEecCCcCCc--hheecccc
Confidence 13556899998788665 99998654
No 131
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.56 E-value=2.2e-07 Score=59.35 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=51.1
Q ss_pred ecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 152 ENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 152 ~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
..|+.+.|.|.+.+...+...+.|++++..+.............+......+.|.+......+.+.|+|.|.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 3578999999999873124689999999887542211112212222234556777777667799999999998764
No 132
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.56 E-value=1.6e-06 Score=56.87 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=48.3
Q ss_pred cCCeEEEEeEEeeCCCC----------CCeEEEeecCe----EEe-e--------ecCCCceEEEeecCcceEEEEEEcc
Q psy10361 153 NGSTINLTCVVRFSPEP----------PAYIFWNHNEA----IIS-Y--------DSQRGGVNVITEKGETTVSYLLIQK 209 (236)
Q Consensus 153 ~g~~~~l~C~~~~~p~p----------~~~v~W~~~~~----~~~-~--------~~~~~~~~~~~~~~~~~~~~L~i~~ 209 (236)
.|++++|.|.......+ .+.+.|++... .+. . ..-++|..+..........+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 48999999998753211 35899997421 111 0 1112345443311122346899999
Q ss_pred cCCCCCeEEEEEeCCCCC
Q psy10361 210 ARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 210 v~~~d~G~y~C~a~n~~g 227 (236)
++.+|+|.|.|.+.+.+.
T Consensus 81 l~~sDsG~Y~C~V~~g~~ 98 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIE 98 (112)
T ss_pred cccccCEEEEEEEecCCC
Confidence 999999999999998865
No 133
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.56 E-value=3.8e-07 Score=58.40 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=47.2
Q ss_pred cCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecC--------------CCceEEEeecCcceEEEEEEcccCCCCCeEE
Q psy10361 153 NGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQ--------------RGGVNVITEKGETTVSYLLIQKARPSDNGKY 218 (236)
Q Consensus 153 ~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y 218 (236)
.|++|+|.|.... +.....+.|++....+..... +.+..+. ....+|.|.+++.+|+|.|
T Consensus 3 ~G~sVtL~c~~~~-~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~-----~~~~sL~I~~~~~~DsG~Y 76 (97)
T cd05775 3 LGGSVTLPLNIPD-GTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFS-----QNDYSLQISNLKMEDAGSY 76 (97)
T ss_pred cCCeEEEeCCCCC-CcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEec-----CCceeEEECCCchHHCEEE
Confidence 5899999998754 123458999987543322111 0122221 1235899999999999999
Q ss_pred EEEeCCCCCc
Q psy10361 219 QCNPANSQAK 228 (236)
Q Consensus 219 ~C~a~n~~g~ 228 (236)
.|.+.+..|.
T Consensus 77 ~c~v~~~~~~ 86 (97)
T cd05775 77 RAEINTKNGV 86 (97)
T ss_pred EEEEEcCCCC
Confidence 9999988773
No 134
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.55 E-value=1.6e-07 Score=60.15 Aligned_cols=59 Identities=17% Similarity=0.374 Sum_probs=40.4
Q ss_pred CeeEeeCCeEEEEec----ceEecCCcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEEe
Q psy10361 1 VSFVRHRDIHLLTTG----RYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVR 59 (236)
Q Consensus 1 v~w~~~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~~ 59 (236)
|.|++..+..++... ......+++|..+...+..+++|+|++++.+|+|.|.|++....
T Consensus 22 v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~~~ 84 (97)
T cd05775 22 ITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINTKN 84 (97)
T ss_pred EEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEcCC
Confidence 579988666665554 22233344443333224467999999999999999999998654
No 135
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.53 E-value=1.3e-06 Score=56.36 Aligned_cols=74 Identities=19% Similarity=0.292 Sum_probs=45.3
Q ss_pred CCeEEEEeEEeeCC-CCCCeEEEeecCe--EEeee------------cCCCceEEEeecCcceEEEEEEcccCCCCCeEE
Q psy10361 154 GSTINLTCVVRFSP-EPPAYIFWNHNEA--IISYD------------SQRGGVNVITEKGETTVSYLLIQKARPSDNGKY 218 (236)
Q Consensus 154 g~~~~l~C~~~~~p-~p~~~v~W~~~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y 218 (236)
|+++.|.|...... .....+.|++... .+... .-+++..+..........+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 68899999885321 1123688987552 11100 011233332221122346899999999999999
Q ss_pred EEEeCCCCC
Q psy10361 219 QCNPANSQA 227 (236)
Q Consensus 219 ~C~a~n~~g 227 (236)
.|.+.|..+
T Consensus 81 ~C~v~~~~~ 89 (100)
T cd05713 81 TCFFQSDGF 89 (100)
T ss_pred EEEEecCCc
Confidence 999998765
No 136
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.50 E-value=4.2e-06 Score=52.50 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=31.4
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVV 124 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v~ 124 (236)
...|.|.+++.+|+|.|+|.|.|..+.. ..+.|.|.
T Consensus 46 ~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~ 82 (88)
T cd05735 46 ISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQ 82 (88)
T ss_pred EEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEe
Confidence 3679999999999999999999998765 67778877
No 137
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.50 E-value=1.8e-06 Score=52.12 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLT 122 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~ 122 (236)
+++|.|.+++.+|+|.|+|.|.|..+.. ..+.|+
T Consensus 38 ~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 38 DGSLEILNITKLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred CCEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence 4579999999999999999999988754 555554
No 138
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.49 E-value=3.3e-06 Score=56.01 Aligned_cols=81 Identities=22% Similarity=0.372 Sum_probs=50.7
Q ss_pred CCcEEEecCCeEEEEeEEeeCCC--CCCeEEEeecCe------EEeeec---------C--CCceEEEeecCcceEEEEE
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPE--PPAYIFWNHNEA------IISYDS---------Q--RGGVNVITEKGETTVSYLL 206 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~--p~~~v~W~~~~~------~~~~~~---------~--~~~~~~~~~~~~~~~~~L~ 206 (236)
+..+.+..|++++|.|....... ....+.|++... .+.... . .+++.+. .+......+|+
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~-~~~~~~~~sL~ 83 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWV-GNPSRKDASIV 83 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEe-cCCcCCeeEEE
Confidence 45677889999999998864321 124699986321 111100 0 0122221 11122346899
Q ss_pred EcccCCCCCeEEEEEeCCCCC
Q psy10361 207 IQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 207 i~~v~~~d~G~y~C~a~n~~g 227 (236)
|.+++.+|+|.|.|.+.|.-.
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred EeeCCcccCEEEEEEEEeCCC
Confidence 999999999999999998753
No 139
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.48 E-value=3e-06 Score=56.03 Aligned_cols=81 Identities=27% Similarity=0.403 Sum_probs=50.7
Q ss_pred CCcEEEecCCeEEEEeEEeeCCC-C-CCeEEEeec----Ce--EEeeecC----------CCceEEEeecCcceEEEEEE
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPE-P-PAYIFWNHN----EA--IISYDSQ----------RGGVNVITEKGETTVSYLLI 207 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~-p-~~~v~W~~~----~~--~~~~~~~----------~~~~~~~~~~~~~~~~~L~i 207 (236)
+..+.+.+|+++.|.|.....+. + ...+.|++. +. .+..... .+++.+.. +......+|+|
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~-~~~~~~~sL~I 83 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDG-NIMRRDASILI 83 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEec-CCcCCceEEEE
Confidence 45678889999999999865421 1 236999752 21 1211100 11222211 11123467999
Q ss_pred cccCCCCCeEEEEEeCCCCC
Q psy10361 208 QKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 208 ~~v~~~d~G~y~C~a~n~~g 227 (236)
.+++.+|+|.|.|.+.|..+
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred eeCChhhCEEEEEEEEeCCC
Confidence 99999999999999998764
No 140
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.47 E-value=1.9e-07 Score=56.52 Aligned_cols=60 Identities=30% Similarity=0.537 Sum_probs=40.0
Q ss_pred CeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCC
Q psy10361 155 STINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPAN 224 (236)
Q Consensus 155 ~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n 224 (236)
..+.|.|.+.+.+ +.+.+.|+ ......... ........+.|.|.++..+|.|.|+|.|.|
T Consensus 16 ~~~~l~C~~~~~~-~~~~~~W~-~~~~~~~~~--------~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 16 GSVTLTCSAEGGP-PPPSISWY-DSNPSFNSN--------SRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEEESSEE-SSEEEEEE-TEEEEEEEE--------EEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred eeEEEEEEEcccc-CCeEEEEE-ecCCceeee--------eeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 3399999998874 25689999 111111100 011112345899999999999999999976
No 141
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.47 E-value=2.1e-06 Score=54.74 Aligned_cols=48 Identities=25% Similarity=0.490 Sum_probs=34.9
Q ss_pred cCCcEEEEcCCCCCcEEEEEcCCCCCCCEEEEEEeecCCCceeEEEEEE
Q psy10361 75 NDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTV 123 (236)
Q Consensus 75 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v 123 (236)
.++|+..... ....++|.|.+++.+|+|.|.|.+.+....+....|.|
T Consensus 48 ~~~r~~~~~~-~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~~~~~~l~v 95 (95)
T cd07701 48 RDNRIELVRA-SWHELSISISDVSLSDEGQYTCSLFTMPVKTSKAYLTV 95 (95)
T ss_pred cCCCEEEEEC-CCCcEEEEECcCCcccCEEEEEEeEeecCccEEEEEEC
Confidence 3456655322 22567899999999999999999998666666666654
No 142
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.47 E-value=1.2e-06 Score=55.48 Aligned_cols=67 Identities=18% Similarity=0.230 Sum_probs=46.1
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEeecCeEEee---------------ecCCCceEEEeecCcceEEEEEEcccCCCCCeEE
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISY---------------DSQRGGVNVITEKGETTVSYLLIQKARPSDNGKY 218 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y 218 (236)
|++|+|.|..... +...+.|++....... ....++..+..+ .+|.|.+++.+|+|.|
T Consensus 1 G~~VtL~c~~~~~--~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~------~sL~I~~l~~~DsG~Y 72 (92)
T cd05741 1 GESVTLPVSNLPE--NLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN------GSLLIQNLTKEDSGTY 72 (92)
T ss_pred CCcEEEEcccCCC--CCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC------ceEEEccCCchhcEEE
Confidence 7899999988653 5568999986532110 011123332221 4899999999999999
Q ss_pred EEEeCCCCCc
Q psy10361 219 QCNPANSQAK 228 (236)
Q Consensus 219 ~C~a~n~~g~ 228 (236)
.|.+....|.
T Consensus 73 ~c~v~~~~~~ 82 (92)
T cd05741 73 TLQIISTNGV 82 (92)
T ss_pred EEEEEcCCCc
Confidence 9999998763
No 143
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.46 E-value=3e-06 Score=55.04 Aligned_cols=76 Identities=22% Similarity=0.443 Sum_probs=50.6
Q ss_pred EEecCCeEEEEeEEeeCCCCCCeEEEeecCe-----EEeee---------cCCCceEEEeecCcceEEEEEEcccCCCCC
Q psy10361 150 FIENGSTINLTCVVRFSPEPPAYIFWNHNEA-----IISYD---------SQRGGVNVITEKGETTVSYLLIQKARPSDN 215 (236)
Q Consensus 150 ~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~-----~~~~~---------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~ 215 (236)
.+.+|++++|.|..... .+...+.|++... .+... ....+..+.... .....+|.|.+++.+|+
T Consensus 2 ~v~~G~~v~L~C~~~~~-~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~sL~I~~v~~~D~ 79 (105)
T cd00099 2 SVSEGESVTLSCTYSGS-FSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDS-SKSSFTLTISSLQPEDS 79 (105)
T ss_pred eecCCCCEEEEEEEeCC-cCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEec-cCCEEEEEECCCCHHHC
Confidence 46789999999999864 1335899998542 11110 112233332222 12456899999999999
Q ss_pred eEEEEEeCCCCC
Q psy10361 216 GKYQCNPANSQA 227 (236)
Q Consensus 216 G~y~C~a~n~~g 227 (236)
|.|.|.+.+..+
T Consensus 80 G~Y~C~v~~~~~ 91 (105)
T cd00099 80 AVYYCAVSLSGG 91 (105)
T ss_pred EEEEEEEecCCC
Confidence 999999988764
No 144
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.46 E-value=8.7e-07 Score=52.36 Aligned_cols=54 Identities=15% Similarity=0.237 Sum_probs=38.3
Q ss_pred ceeeEEecCCcEEEEcCCCCCcEEEEEcCCCCCCCEEEEEEeecCCCc-eeEEEEEEE
Q psy10361 68 TGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQ-AHYIYLTVV 124 (236)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~v~ 124 (236)
...+.|.++++.... ......|.|.++..+|+|.|+|.|.|..+. +....+++.
T Consensus 12 ~P~v~W~kdg~~l~~---~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 12 PPEFQWYKDGKLISG---KHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CCEEEEEECCEECcc---cCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 345677777654421 123568999999999999999999998764 355555553
No 145
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.46 E-value=1.4e-06 Score=55.55 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=48.2
Q ss_pred EEEecCCeEEEEeEEeeCCCCCCe--EEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCe-EEEEEeCCC
Q psy10361 149 VFIENGSTINLTCVVRFSPEPPAY--IFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNG-KYQCNPANS 225 (236)
Q Consensus 149 ~~~~~g~~~~l~C~~~~~p~p~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~y~C~a~n~ 225 (236)
..+.+|+.++|.|.+.+. .|.+. +.|++++..+...... ..........++|.+. +.++|.| .|+|.|.+.
T Consensus 11 ~~~~eG~~~tL~C~v~g~-~P~a~L~i~W~rG~~~l~~~~~~----~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~ 84 (100)
T cd05755 11 SWQPVGKNYTLQCDVPGV-APRQNLTVVLLRGNETLSRQPFG----DNTKSPVNAPATITIT-VDREDHGANFSCETELD 84 (100)
T ss_pred CcccCCCcEEEEEEEcCc-CCCCcEEEEEeeCCEEcccceec----cccCCCceeEEEEEEe-cchhhCCcEEEEEEEec
Confidence 356789999999999764 25555 7999999888432111 0011122344567665 4566666 999999999
Q ss_pred CC
Q psy10361 226 QA 227 (236)
Q Consensus 226 ~g 227 (236)
++
T Consensus 85 l~ 86 (100)
T cd05755 85 LR 86 (100)
T ss_pred cC
Confidence 85
No 146
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.45 E-value=4.4e-06 Score=50.64 Aligned_cols=34 Identities=29% Similarity=0.278 Sum_probs=28.4
Q ss_pred EEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEE
Q psy10361 90 WTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTV 123 (236)
Q Consensus 90 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v 123 (236)
.+|.|.+++.+|+|.|+|.|.|..+.. ..+.|.|
T Consensus 41 ~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 41 VTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred EEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 479999999999999999999988765 5555543
No 147
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.45 E-value=2.2e-06 Score=55.48 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=48.1
Q ss_pred EEecCCeEEEEeEEeeCCCCCCeEEEeecCe-----EEee-ec----------CCCceEEEeecCcceEEEEEEcccCCC
Q psy10361 150 FIENGSTINLTCVVRFSPEPPAYIFWNHNEA-----IISY-DS----------QRGGVNVITEKGETTVSYLLIQKARPS 213 (236)
Q Consensus 150 ~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~-----~~~~-~~----------~~~~~~~~~~~~~~~~~~L~i~~v~~~ 213 (236)
.+.+|+++.|.|.. .|.+...+.|+++.. .+.. .. ..++..+.. ++ +|.|.+++.+
T Consensus 9 ~~~~G~~V~L~v~~--~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~-ng-----SL~I~~v~~~ 80 (105)
T cd05774 9 QVAEGENVLLLVHN--LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYP-NG-----SLLIQNVTQK 80 (105)
T ss_pred cccCCCCEEEEecC--CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeC-CC-----cEEEecCCcc
Confidence 45679999999865 355666899999631 2211 00 123333322 32 7999999999
Q ss_pred CCeEEEEEeCCCCC
Q psy10361 214 DNGKYQCNPANSQA 227 (236)
Q Consensus 214 d~G~y~C~a~n~~g 227 (236)
|.|.|+|.+.+...
T Consensus 81 D~G~Y~~~v~~~~~ 94 (105)
T cd05774 81 DTGFYTLQTITTNF 94 (105)
T ss_pred cCEEEEEEEEeCCc
Confidence 99999999988873
No 148
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.41 E-value=3.3e-06 Score=55.07 Aligned_cols=76 Identities=17% Similarity=0.369 Sum_probs=49.5
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCe-----EEeeec------CCCceEEEeecCcceEEEEEEcccCCCC
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEA-----IISYDS------QRGGVNVITEKGETTVSYLLIQKARPSD 214 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~-----~~~~~~------~~~~~~~~~~~~~~~~~~L~i~~v~~~d 214 (236)
+..+.+.+|++++|.|.+.+.. ....+.|++... .+.... ...+..... ......|.|.+++.+|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~-~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~~~~~D 82 (106)
T cd04980 7 PATLSVSPGESATISCKASQSV-SSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG---SGTDFTLTISRVEPED 82 (106)
T ss_pred CCcEEECCCCCEEEEEEECCCC-CCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec---cCCEEEEEECCCChHH
Confidence 4456788999999999987552 134799997531 111100 011222211 1244679999999999
Q ss_pred CeEEEEEeCCC
Q psy10361 215 NGKYQCNPANS 225 (236)
Q Consensus 215 ~G~y~C~a~n~ 225 (236)
+|.|.|.+.+.
T Consensus 83 sg~Y~Ca~~~~ 93 (106)
T cd04980 83 AAVYYCQQYGT 93 (106)
T ss_pred CEEEEEEEeCC
Confidence 99999998765
No 149
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.41 E-value=2.3e-06 Score=53.10 Aligned_cols=36 Identities=28% Similarity=0.303 Sum_probs=31.3
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCc-eeEEEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQ-AHYIYLTVV 124 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~v~ 124 (236)
.+.|.|.+++.+|+|.|+|.|.|.... +....|.|.
T Consensus 46 ~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~ 82 (85)
T cd05853 46 AGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVR 82 (85)
T ss_pred CCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEe
Confidence 457999999999999999999998754 477888887
No 150
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.41 E-value=1.7e-05 Score=50.07 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=41.0
Q ss_pred CCCCCCeeEEEEEEEEecceeEEecceeeEEecCCcEEEEcCCCCCcEEEEEcCCCCCCCEEEEEEeecCCCce
Q psy10361 43 PQHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA 116 (236)
Q Consensus 43 ~~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 116 (236)
+..++.-.+.|.+..... .......+........|+..... .....|.|.+++.+|+|.|+|.|.|..+..
T Consensus 12 v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~--g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 12 LSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKE--GVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred EcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeC--CCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 455778888887754221 11111000001111223333211 123589999999999999999999988765
No 151
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.41 E-value=5.8e-06 Score=50.13 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=28.0
Q ss_pred EEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEE
Q psy10361 90 WTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTV 123 (236)
Q Consensus 90 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v 123 (236)
..|.|.+++.+|+|.|+|.|.|..+.. ..+.|.|
T Consensus 41 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 41 ICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred EEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 369999999999999999999988764 5555543
No 152
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.40 E-value=7.6e-07 Score=53.21 Aligned_cols=55 Identities=13% Similarity=0.183 Sum_probs=35.1
Q ss_pred eeeEEecCCcEEEEcCCCCCcEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEE
Q psy10361 69 GRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTV 123 (236)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v 123 (236)
..+.|.++++.............|.|.++..+|+|.|+|.|.|..+.. ....+++
T Consensus 13 P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 13 PEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 345666555432111111124579999999999999999999988643 4444444
No 153
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.39 E-value=7.1e-06 Score=52.33 Aligned_cols=73 Identities=21% Similarity=0.354 Sum_probs=45.0
Q ss_pred CCCCCCeeEEEEEEEEecceeEEecceeeEEec-CC--------cEEEEcCCCCCcEEEEEcCCCCCCCEEEEEEeecCC
Q psy10361 43 PQHKDTGIYECQVSFVRHRDIHLLTTGRYTYTN-DQ--------RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTP 113 (236)
Q Consensus 43 ~~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 113 (236)
+..++...+.|++...... ..+.|.+ ++ ++..... ......|.|.+++.+|+|.|+|.|.|..
T Consensus 12 v~~G~~v~l~C~v~G~P~~-------p~i~W~~~~g~~l~~~~~r~~v~~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~ 83 (96)
T cd05865 12 ISVGESKFFLCQVAGEAKD-------KDISWFSPNGEKLTPNQQRISVVRN-DDYSSTLTIYNANIDDAGIYKCVVSNED 83 (96)
T ss_pred ECCCCeEEEEEEEeCCCCC-------CEEEEECCCCcCccccCCeEEEEeC-CCCceEEEEeccChhhCEEEEEEEEcCC
Confidence 3457888889988653211 1233432 22 2222211 1124689999999999999999999986
Q ss_pred -Cce-eEEEEEE
Q psy10361 114 -HQA-HYIYLTV 123 (236)
Q Consensus 114 -~~~-~~~~l~v 123 (236)
+.. ..+.|.|
T Consensus 84 ~g~~~~s~~l~v 95 (96)
T cd05865 84 EGESEATVNVKI 95 (96)
T ss_pred CCcEEEEEEEEE
Confidence 443 5555554
No 154
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.39 E-value=3.4e-06 Score=54.10 Aligned_cols=79 Identities=23% Similarity=0.339 Sum_probs=48.0
Q ss_pred CeEEEEeEEeeCC-CCCCeEEEeecCeE----Eeee----------cCCCceEEEeecCcceEEEEEEcccCCCCCeEEE
Q psy10361 155 STINLTCVVRFSP-EPPAYIFWNHNEAI----ISYD----------SQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQ 219 (236)
Q Consensus 155 ~~~~l~C~~~~~p-~p~~~v~W~~~~~~----~~~~----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~ 219 (236)
+++.|.|.....+ .....+.|++.... +... ...+++.+... .....+|.|.+++.+|+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~--~~~~~sL~I~~v~~~D~G~Y~ 78 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNS--SLEDATISISNLRLEDEGNYI 78 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCC--CCCceEEEEccCCcccCEEEE
Confidence 4689999987643 12347999986531 1000 01223222211 113468999999999999999
Q ss_pred EEeCC-CCC---ceEEEEEc
Q psy10361 220 CNPAN-SQA---KSVMVNVL 235 (236)
Q Consensus 220 C~a~n-~~g---~~~~~~v~ 235 (236)
|.+.+ +.| ..+.|.|+
T Consensus 79 C~v~~~~~g~~~~~~~l~V~ 98 (98)
T cd05718 79 CEFATFPQGNRQKVTTLTVL 98 (98)
T ss_pred EEEEeCCCCcEEEEEEEEeC
Confidence 99864 445 44556664
No 155
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.37 E-value=8.3e-06 Score=53.49 Aligned_cols=74 Identities=24% Similarity=0.343 Sum_probs=49.7
Q ss_pred CCeEEEEeEEeeCCC---------CCCeEEEeecC----------eEEe---------eecCCCceEEEeecCcceEEEE
Q psy10361 154 GSTINLTCVVRFSPE---------PPAYIFWNHNE----------AIIS---------YDSQRGGVNVITEKGETTVSYL 205 (236)
Q Consensus 154 g~~~~l~C~~~~~p~---------p~~~v~W~~~~----------~~~~---------~~~~~~~~~~~~~~~~~~~~~L 205 (236)
|.++.|.|...-.|. ....|.|.+-. ..+. ....+++..+..........+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 678899998875542 12478898741 1111 1122456666544333345799
Q ss_pred EEcccCCCCCeEEEEEeCCCCC
Q psy10361 206 LIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 206 ~i~~v~~~d~G~y~C~a~n~~g 227 (236)
.|.+++.+|.|.|.|.+.+...
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~ 103 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIE 103 (117)
T ss_pred EEcccccccCEEEEEEEEECCc
Confidence 9999999999999999988875
No 156
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.37 E-value=1.1e-05 Score=53.52 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=50.8
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecC--eE---Ee-eec----------CCCceEEEeecCcceEEEEEEcc
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNE--AI---IS-YDS----------QRGGVNVITEKGETTVSYLLIQK 209 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~--~~---~~-~~~----------~~~~~~~~~~~~~~~~~~L~i~~ 209 (236)
+..+.+.+|++++|.|.+.+...+...+.|++.. .. +. ... ...+.....+. ......|.|.+
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~L~I~~ 83 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDV-GKSTSTLTIQN 83 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEEC-CCCEEEEEEEE
Confidence 3456778899999999997621244589999852 11 11 000 12233322221 12456899999
Q ss_pred cCCCCCeEEEEEeCCC
Q psy10361 210 ARPSDNGKYQCNPANS 225 (236)
Q Consensus 210 v~~~d~G~y~C~a~n~ 225 (236)
++.+|+|.|.|.+...
T Consensus 84 ~~~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 84 LEKEDSATYYCAYWES 99 (116)
T ss_pred CCHHHCEEEEEEEecC
Confidence 9999999999998753
No 157
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.36 E-value=6.6e-06 Score=53.70 Aligned_cols=81 Identities=22% Similarity=0.350 Sum_probs=52.5
Q ss_pred CCeEEEEeEEeeCCC-----CCCeEEEeecC-----eEE--e---------eecCCCceEEEeecCcceEEEEEEcccCC
Q psy10361 154 GSTINLTCVVRFSPE-----PPAYIFWNHNE-----AII--S---------YDSQRGGVNVITEKGETTVSYLLIQKARP 212 (236)
Q Consensus 154 g~~~~l~C~~~~~p~-----p~~~v~W~~~~-----~~~--~---------~~~~~~~~~~~~~~~~~~~~~L~i~~v~~ 212 (236)
|+++.|.|...-.|. ..+.+.|.+.. ... . ...-++|..+..........+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 788999999764332 13589998751 111 1 11223566655433334567999999999
Q ss_pred CCCeEEEEEeCCCCC---ceEEEEE
Q psy10361 213 SDNGKYQCNPANSQA---KSVMVNV 234 (236)
Q Consensus 213 ~d~G~y~C~a~n~~g---~~~~~~v 234 (236)
+|.|.|.|.+..... ..+.|.|
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V 106 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEV 106 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEE
Confidence 999999999988664 3444444
No 158
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.36 E-value=2.2e-06 Score=53.07 Aligned_cols=67 Identities=22% Similarity=0.216 Sum_probs=42.4
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeec-CcceEEEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEK-GETTVSYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
+.|.|.+.+. .|.+.+.|++++..+.... .......+ .....+.|.+.....++.+.|+|.|.|...
T Consensus 2 ~~L~C~~~~~-~P~~~v~W~~~~~~l~~~~---~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l 69 (82)
T cd05761 2 VELTCTSSGS-KPAATIRWFKGDKELKGVK---LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPAL 69 (82)
T ss_pred EEEEEEecCc-CcCCeEEEEECCEEccCce---eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhc
Confidence 5899999765 2556999999998874211 11111111 123445566655555566799999999874
No 159
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.34 E-value=1.1e-05 Score=50.37 Aligned_cols=34 Identities=12% Similarity=0.298 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLT 122 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~ 122 (236)
...|.|.++..+|+|.|+|.|.|..+.. ..+.|.
T Consensus 51 ~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~ 85 (86)
T cd05894 51 LSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVK 85 (86)
T ss_pred eEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEE
Confidence 5689999999999999999999988754 444444
No 160
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.33 E-value=6.5e-06 Score=52.82 Aligned_cols=73 Identities=19% Similarity=0.359 Sum_probs=46.3
Q ss_pred EEecCCeEEEEeEEeeCCCCCCeEEEeecCe--E---Eeee------cCCCceEEEeecCcceEEEEEEcccCCCCCeEE
Q psy10361 150 FIENGSTINLTCVVRFSPEPPAYIFWNHNEA--I---ISYD------SQRGGVNVITEKGETTVSYLLIQKARPSDNGKY 218 (236)
Q Consensus 150 ~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~--~---~~~~------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y 218 (236)
.+.+|+++.|.|...........+.|++... . +... ....+...... .....|+|.+++.+|+|.|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~---~~~~~L~I~~~~~~Dsg~Y 78 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKS---GNTASLTISGAQTEDEADY 78 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEcc---CCEEEEEECCCChhhCEEE
Confidence 3568999999999865311223799997442 1 1110 00112222111 1456899999999999999
Q ss_pred EEEeCCC
Q psy10361 219 QCNPANS 225 (236)
Q Consensus 219 ~C~a~n~ 225 (236)
.|.+.+.
T Consensus 79 ~C~~~~~ 85 (98)
T cd04984 79 YCQVWDS 85 (98)
T ss_pred EEEEccC
Confidence 9998864
No 161
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.33 E-value=1.1e-05 Score=50.33 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=31.1
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecCCCc-eeEEEEEEE
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTTPHQ-AHYIYLTVV 124 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~v~ 124 (236)
..+.|.|.+++.+|+|.|+|.|.|..+. +..+.|.|.
T Consensus 45 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 82 (85)
T cd04970 45 SNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVR 82 (85)
T ss_pred ccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEE
Confidence 3568999999999999999999997754 467777776
No 162
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.32 E-value=1.8e-05 Score=50.10 Aligned_cols=70 Identities=17% Similarity=0.299 Sum_probs=43.4
Q ss_pred CCCCCCeeEEEEEEEEecceeEEecceeeEEec-CC-------cEEEEcCCCCCcEEEEEcCCCCCCCEEEEEEeecCCC
Q psy10361 43 PQHKDTGIYECQVSFVRHRDIHLLTTGRYTYTN-DQ-------RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPH 114 (236)
Q Consensus 43 ~~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 114 (236)
+..++...+.|.+.... . .+.|.. ++ ++.... .......|.|.+++.+|+|.|+|.|.|..+
T Consensus 12 v~~G~~~~l~C~~~G~p-~--------~i~W~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g 81 (92)
T cd04977 12 ISVGESKFFLCQVIGEP-K--------DISWFSPNGEKLVTQQQISVVQ-NDDVRSTLTIYNANIEDAGIYKCVATDAKG 81 (92)
T ss_pred ECCCCeEEEEEEeEeeC-C--------eEEEECCCCCEeccCCCEEEEe-CCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence 44678888899886431 1 223332 22 222211 122346899999999999999999999854
Q ss_pred ce--eEEEEE
Q psy10361 115 QA--HYIYLT 122 (236)
Q Consensus 115 ~~--~~~~l~ 122 (236)
.. ..+.|.
T Consensus 82 ~~~~~sv~l~ 91 (92)
T cd04977 82 TESEATVNLK 91 (92)
T ss_pred CcceeEEEEE
Confidence 33 444443
No 163
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.31 E-value=5.5e-06 Score=52.66 Aligned_cols=69 Identities=12% Similarity=0.235 Sum_probs=46.3
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeC
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPA 223 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~ 223 (236)
.+...+..|++++|.|.... +...+.|++++...... ...........+.+.|..++.+|+|.|.|...
T Consensus 7 ~p~~vV~~G~~VTL~C~~~~---~~~~f~l~k~g~~~~~~------~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 7 HPSPVVPSGENVTLQCHSDI---RFDRFILYKEGRSKPVL------HLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred cCCCccCCCCeEEEEEecCC---CCCEEEEEECCCCCCce------ecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 44456778999999997754 33479999988643210 00000001234578999999999999999963
No 164
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.30 E-value=1.5e-05 Score=49.61 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=31.2
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVV 124 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v~ 124 (236)
.+.|.|.+++.+|+|.|+|.|.|..+.. ..+.|.|.
T Consensus 46 ~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~ 82 (85)
T cd05854 46 IGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVR 82 (85)
T ss_pred EeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEE
Confidence 4689999999999999999999988654 77778877
No 165
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.30 E-value=2.5e-06 Score=55.89 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=40.9
Q ss_pred CeeEeeCC---eE-EEEecc-eEecCCcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEE
Q psy10361 1 VSFVRHRD---IH-LLTTGR-YTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFV 58 (236)
Q Consensus 1 v~w~~~~~---~~-~~~~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~ 58 (236)
|.|++... .. ++.... ......+||.+.......+++|+|.+++.+|+|.|.|.+...
T Consensus 30 v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~ 92 (109)
T cd04983 30 LFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSES 92 (109)
T ss_pred EEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecC
Confidence 57998642 22 222211 111356899887765668999999999999999999998753
No 166
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=98.27 E-value=2.6e-05 Score=49.96 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=32.2
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEEE
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVV 124 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v~ 124 (236)
....|.|.++..+|+|.|+|.+.|..+.. ..+.|.|.
T Consensus 54 ~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~ 91 (98)
T cd05762 54 NSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVV 91 (98)
T ss_pred CeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEe
Confidence 35689999999999999999999998765 67888887
No 167
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.27 E-value=1.8e-05 Score=51.66 Aligned_cols=74 Identities=18% Similarity=0.416 Sum_probs=46.0
Q ss_pred EEecCCeEEEEeEEeeCCCCCCeEEEeecCeE---------EeeecC----------CCceEEEeecCcceEEEEEEccc
Q psy10361 150 FIENGSTINLTCVVRFSPEPPAYIFWNHNEAI---------ISYDSQ----------RGGVNVITEKGETTVSYLLIQKA 210 (236)
Q Consensus 150 ~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~---------~~~~~~----------~~~~~~~~~~~~~~~~~L~i~~v 210 (236)
.+.+|++++|.|...+.. ....+.|++.... +..... ..+...... .......|+|.++
T Consensus 2 ~v~~G~~vtL~C~~~~~~-~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~-~~~~~~~L~I~~~ 79 (107)
T cd07700 2 LVQTNNTVKLSCEAKGIS-ENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVT-SDSSRYRLHINRV 79 (107)
T ss_pred EEcCCCCEEEEEEEecCC-CCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEE-CCCCEEEEEECCC
Confidence 467899999999986532 2247999975321 100000 112221111 1123467999999
Q ss_pred CCCCCeEEEEEeCCC
Q psy10361 211 RPSDNGKYQCNPANS 225 (236)
Q Consensus 211 ~~~d~G~y~C~a~n~ 225 (236)
+.+|+|.|.|...+.
T Consensus 80 ~~~Dsg~YyCa~~~~ 94 (107)
T cd07700 80 KPEDSGTYFCMTVGS 94 (107)
T ss_pred CHHHCEEEEEeEcCC
Confidence 999999999998644
No 168
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.27 E-value=4.5e-06 Score=51.66 Aligned_cols=66 Identities=24% Similarity=0.231 Sum_probs=42.6
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeec--CcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEK--GETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
+.|.|.+.+.. |...+.|++++..+.... ........ .....+.|.+..-...+...|+|.+.+..
T Consensus 2 ~~LtC~a~gf~-P~~~itW~kng~~l~~~~---~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSK-PAADIRWFKNDKEIKDVK---YLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCcc-CCCEEEEEECCEECcCce---eeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 57999998753 558999999998874311 11111111 12345567766544555669999999986
No 169
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.26 E-value=2.3e-05 Score=47.54 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=27.9
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLT 122 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~ 122 (236)
...|.|.+++.+|+|.|+|.|.|..+.. ..+.|.
T Consensus 40 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 74 (75)
T cd05744 40 RICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD 74 (75)
T ss_pred eEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence 3479999999999999999999988754 555554
No 170
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.26 E-value=7.1e-06 Score=51.48 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=29.6
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEE
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTV 123 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v 123 (236)
....|.|.+++.+|+|.|+|.+.|..+.. ....|.|
T Consensus 51 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 51 SGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV 87 (88)
T ss_pred eCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence 35689999999999999999999988764 5566655
No 171
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.25 E-value=1.3e-05 Score=48.49 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=27.3
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLT 122 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~ 122 (236)
...|.|..++.+|+|.|+|.|.|..+.. ..+.|.
T Consensus 39 ~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05764 39 NGTLDILITTVKDTGSFTCIASNAAGEATATVELH 73 (74)
T ss_pred CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 4579999999999999999999988654 444443
No 172
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.25 E-value=3e-06 Score=52.09 Aligned_cols=55 Identities=29% Similarity=0.463 Sum_probs=38.7
Q ss_pred CeeEeeCC---eEEEEec---ceEe---cCCcceEEeecCCCCceEEEEcCCCCCCCeeEEEEE
Q psy10361 1 VSFVRHRD---IHLLTTG---RYTY---TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQV 55 (236)
Q Consensus 1 v~w~~~~~---~~~~~~~---~~~~---~~~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v 55 (236)
|.|++... +.++... ...+ ....|+.+.......+++|+|.+++.+|+|.|.|.+
T Consensus 18 v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 18 VSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred EEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence 47998752 2333322 2222 235788887765578899999999999999999974
No 173
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.25 E-value=1.5e-05 Score=51.10 Aligned_cols=76 Identities=18% Similarity=0.302 Sum_probs=49.9
Q ss_pred EEEecCCeEEEEeEEeeCCCCCCeEEEeecCeE----Eee------ecCCCceEEEeecCcceEEEEEEcccCCCCCeEE
Q psy10361 149 VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAI----ISY------DSQRGGVNVITEKGETTVSYLLIQKARPSDNGKY 218 (236)
Q Consensus 149 ~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~----~~~------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y 218 (236)
+.+.+|++++|.|..... .+...+.|++.... +.. ....++..+.. +......+|.|.+++.+|+|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~-~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~-~~~~~~~~L~I~~v~~~DsG~Y 79 (98)
T cd05716 2 VTGELGGSVTIPCPYPPK-NRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTD-DPDNGVFTVTLNQLRKEDAGWY 79 (98)
T ss_pred EEEEeCCeEEEEeeCCCC-CCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEe-cCCCCEEEEEEcCCCHHHCEEE
Confidence 356789999999988642 13347899986421 110 01123444322 2223557899999999999999
Q ss_pred EEEeCCCC
Q psy10361 219 QCNPANSQ 226 (236)
Q Consensus 219 ~C~a~n~~ 226 (236)
.|.+....
T Consensus 80 ~C~~~~~~ 87 (98)
T cd05716 80 WCGVGDDG 87 (98)
T ss_pred EEEcccCC
Confidence 99988765
No 174
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.24 E-value=5.4e-06 Score=52.03 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTV 123 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v 123 (236)
+..|.|.+++.+|+|.|+|.|.|..+.. ..+.|.|
T Consensus 52 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 87 (88)
T cd05851 52 GAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYV 87 (88)
T ss_pred CCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence 4579999999999999999999988754 4555554
No 175
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.24 E-value=2.2e-05 Score=49.98 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=30.5
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVV 124 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v~ 124 (236)
...|.|.+++.+|+|.|+|.|.|..+.. ..+.|.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 93 (95)
T cd05730 57 GSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVF 93 (95)
T ss_pred CCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEE
Confidence 3479999999999999999999998764 66777775
No 176
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.24 E-value=1.1e-05 Score=48.73 Aligned_cols=34 Identities=29% Similarity=0.351 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLT 122 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~ 122 (236)
.+.|.|.+++.+|+|.|+|.|.|..+.. ..+.|.
T Consensus 39 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 73 (74)
T cd05745 39 SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLT 73 (74)
T ss_pred CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence 4589999999999999999999987654 445554
No 177
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.24 E-value=6.5e-06 Score=50.74 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=25.2
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA 116 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 116 (236)
.+.|.|.+++.+|+|.|+|.|.|..+..
T Consensus 45 ~~~L~I~~~~~~D~G~YtC~A~N~~G~~ 72 (81)
T cd04971 45 HGCLQFDNPTHVNNGNYTLVASNEYGQD 72 (81)
T ss_pred EEEEEECCCCcccCeEEEEEEEeCCCCe
Confidence 4579999999999999999999988764
No 178
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.23 E-value=2e-05 Score=50.19 Aligned_cols=47 Identities=26% Similarity=0.482 Sum_probs=33.5
Q ss_pred CCcEEEEcCCCCCcEEEEEcCCCCCCCEEEEEEeecCCCceeEEEEEE
Q psy10361 76 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTV 123 (236)
Q Consensus 76 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v 123 (236)
++|+.... .......|.|.+++.+|+|.|.|.+.+....++...|+|
T Consensus 49 ~~r~~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~v 95 (95)
T cd05717 49 DNRIQLVN-FSANELSISISNVSLSDEGRYTCSLYTMPVQTAKATVTV 95 (95)
T ss_pred cCcEEEEc-CCCCeeEEEEccCCcccCEEEEEEEecCCCceEEEEEEC
Confidence 45665532 122457899999999999999999988765565555553
No 179
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.22 E-value=1.2e-05 Score=52.83 Aligned_cols=78 Identities=26% Similarity=0.522 Sum_probs=51.7
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCe-----EEe-e----------ecCCCceEEEeecCcceEEEEEEcc
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEA-----IIS-Y----------DSQRGGVNVITEKGETTVSYLLIQK 209 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~-----~~~-~----------~~~~~~~~~~~~~~~~~~~~L~i~~ 209 (236)
+..+.+.+|+++.|.|... .+.....+.|++... .+. . ....++..+... ......+|.|.+
T Consensus 8 ~~~v~~~~G~~v~L~C~~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~sL~i~~ 85 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYS-SSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGN-GSQNNFSLTIKN 85 (114)
T ss_dssp ESEEEEETTSEEEEEEEEE-SSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEE-TTTTEEEEEESS
T ss_pred CCeEEEecCCCEEEEEEEe-CCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeec-ccCCeEEEEECC
Confidence 3457888999999999998 222445899998432 111 0 011123332222 223456899999
Q ss_pred cCCCCCeEEEEEeCCC
Q psy10361 210 ARPSDNGKYQCNPANS 225 (236)
Q Consensus 210 v~~~d~G~y~C~a~n~ 225 (236)
++.+|+|.|.|.+...
T Consensus 86 l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 86 LQPSDSGTYFCQVSTS 101 (114)
T ss_dssp ESGGGEEEEEEEEEES
T ss_pred CCcCcCEEEEEEEEEC
Confidence 9999999999998877
No 180
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.22 E-value=3.5e-06 Score=54.20 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=46.4
Q ss_pred ecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 152 ENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 152 ~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
..++.+.|.|.+.+...+...+.|+++|..+.............+......+.|.+..-...+...|+|.+....
T Consensus 15 ~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 15 EKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred ccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 346778999999986323568999999988743211111121112223445566665544445669999998765
No 181
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.21 E-value=2e-05 Score=47.55 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=27.9
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLT 122 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~ 122 (236)
...|.|.+++.+|+|.|+|.+.|..+.. ..+.|.
T Consensus 38 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (73)
T cd04969 38 DGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS 72 (73)
T ss_pred CCeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence 3579999999999999999999988754 455554
No 182
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.21 E-value=4.1e-05 Score=49.03 Aligned_cols=77 Identities=14% Similarity=0.211 Sum_probs=47.0
Q ss_pred eEEEEeEEeeCCC--CCCeEEEeecC----eEEeeec----------CCCceEEEeecCcceEEEEEEcccCCCCCeEEE
Q psy10361 156 TINLTCVVRFSPE--PPAYIFWNHNE----AIISYDS----------QRGGVNVITEKGETTVSYLLIQKARPSDNGKYQ 219 (236)
Q Consensus 156 ~~~l~C~~~~~p~--p~~~v~W~~~~----~~~~~~~----------~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~ 219 (236)
++.|.|.....+. ....+.|.+.. ..+.... -++|+.+.. ......+|.|.+++.+|.|.|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~--~~~~daSi~i~nl~~~D~G~Y~ 79 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKN--PSFEDGTISLSRLELEDEGVYI 79 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcC--CCCCcceEEEcCCccccCEEEE
Confidence 5789998874311 12268998742 1221111 123444331 1224468999999999999999
Q ss_pred EEeCC-CCC---ceEEEEE
Q psy10361 220 CNPAN-SQA---KSVMVNV 234 (236)
Q Consensus 220 C~a~n-~~g---~~~~~~v 234 (236)
|.+.+ +.| ..+.|.|
T Consensus 80 C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 80 CEFATFPTGNRESQLNLTV 98 (99)
T ss_pred EEEEeCCCCCeEEEEEEEE
Confidence 99999 455 4445555
No 183
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.21 E-value=3.4e-06 Score=50.65 Aligned_cols=36 Identities=33% Similarity=0.447 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEE
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTV 123 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v 123 (236)
....|.|.+++.+|+|.|+|.|.|..+.. ..+.|.|
T Consensus 34 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 34 NNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 35689999999999999999999988764 4455544
No 184
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.21 E-value=2.7e-05 Score=49.16 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce--eEEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA--HYIYLTV 123 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~l~v 123 (236)
...|.|.+++.+|+|.|.|.|.|..+.. ..+.|.|
T Consensus 54 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 54 NRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred CCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 4579999999999999999999988653 5555554
No 185
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.20 E-value=1.1e-05 Score=50.23 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEE
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLT 122 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~ 122 (236)
..+.|.|.+++.+|+|.|+|.+.|..+.. ..+.|.
T Consensus 49 ~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05857 49 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 84 (85)
T ss_pred CceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence 35679999999999999999999988754 455554
No 186
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.19 E-value=2.1e-05 Score=49.46 Aligned_cols=69 Identities=26% Similarity=0.420 Sum_probs=44.8
Q ss_pred CCCCeeEEEEEEEEecceeEEecceeeEEecC-------CcEEEEcCCCCCcEEEEEcCCCCCCCEEEEEEeecCCCce-
Q psy10361 45 HKDTGIYECQVSFVRHRDIHLLTTGRYTYTND-------QRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA- 116 (236)
Q Consensus 45 ~~D~G~Y~C~v~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~- 116 (236)
.++...+.|.+...... .+.|..+ .++...... ....|.|.+++.+|+|.|+|.+.+..+..
T Consensus 14 ~G~~~~l~c~~~~~p~~--------~v~W~~~~~~l~~~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~ 83 (90)
T PF07679_consen 14 EGESVTLECEVSGNPPP--------TVTWYKNGRPLTSSQRYQIESDG--GSSSLTIKNVTREDAGTYTCVASNSSGEAT 83 (90)
T ss_dssp TTSEEEEEEEEEESSSS--------EEEEEETTEEEESSSSEEEEEET--TEEEEEESSESGGGSEEEEEEEEETTEEEE
T ss_pred CCCEEEEEEEEEeCCCC--------cccccccccceeeeeeeeeeccc--ceeEEccCCCChhhCEEEEEEEEECCCEEE
Confidence 56778888877644221 2233333 333332211 57789999999999999999999987654
Q ss_pred eEEEEEE
Q psy10361 117 HYIYLTV 123 (236)
Q Consensus 117 ~~~~l~v 123 (236)
..+.|.|
T Consensus 84 ~~~~l~V 90 (90)
T PF07679_consen 84 ASVNLTV 90 (90)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
Confidence 5555544
No 187
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.19 E-value=1.3e-05 Score=48.68 Aligned_cols=70 Identities=16% Similarity=0.211 Sum_probs=42.7
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
+.|.|.+.+.-.+...+.|++++..+.............+......+.|.+......+...|+|.+....
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6899999886323368999999986432111111111112223455667776656667779999987654
No 188
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.18 E-value=2.6e-05 Score=50.00 Aligned_cols=34 Identities=24% Similarity=0.501 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLT 122 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~ 122 (236)
...|.|.+++.+|+|.|+|.|.|..+.. ..+.|+
T Consensus 63 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 97 (98)
T cd05870 63 ESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD 97 (98)
T ss_pred eeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEe
Confidence 4689999999999999999999988754 455554
No 189
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.18 E-value=1.3e-05 Score=48.51 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEE
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLT 122 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~ 122 (236)
....|.|.+++.+|+|.|+|.|.|..+.. ..+.|.
T Consensus 38 ~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05748 38 SSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVK 73 (74)
T ss_pred CeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEE
Confidence 35689999999999999999999988754 444443
No 190
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.17 E-value=7.4e-06 Score=54.31 Aligned_cols=38 Identities=26% Similarity=0.491 Sum_probs=30.7
Q ss_pred cceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEEec
Q psy10361 23 QRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRH 60 (236)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~~~ 60 (236)
.|+.+.......+++|+|.+++.+|+|.|.|.+.+...
T Consensus 67 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 67 DRVEWVGNPSRKDASIVIHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred CcEEEecCCcCCeeEEEEeeCCcccCEEEEEEEEeCCC
Confidence 45566655556789999999999999999999987643
No 191
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.17 E-value=8.8e-06 Score=49.72 Aligned_cols=28 Identities=29% Similarity=0.390 Sum_probs=25.3
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA 116 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 116 (236)
.+.|.|.++..+|+|.|+|.|.|..+..
T Consensus 43 ~~~L~i~~~~~~D~G~YtC~A~N~~G~~ 70 (79)
T cd05855 43 HGCLQLDNPTHLNNGIYTLVAKNEYGED 70 (79)
T ss_pred EEEEEECCCCcccCEEEEEEEEcCCccc
Confidence 4689999999999999999999988754
No 192
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.16 E-value=8.2e-06 Score=49.50 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=28.4
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTV 123 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v 123 (236)
...|.|.+++.+|+|.|.|.|.|..+.. ..+.|.|
T Consensus 39 ~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 39 DDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 3579999999999999999999987643 5555555
No 193
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.16 E-value=1.4e-05 Score=49.44 Aligned_cols=67 Identities=22% Similarity=0.300 Sum_probs=43.2
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecC--cceEEEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKG--ETTVSYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
+.|.|.+.+.- |.+.+.|++++..+.... .... ...++ ....+.|.+......+...|+|.+.+...
T Consensus 2 ~~LtC~a~g~~-P~~~ItW~k~g~~l~~~~--~~~~-~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSK-PAANIKWRKGDQELEGAP--TSVL-EDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCcc-CCCEeEEEECCEECCCcc--eeEE-ECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 57999997752 556999999998774321 1111 11121 22345666655556667799999999874
No 194
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.16 E-value=2.2e-05 Score=49.45 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=30.6
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVV 124 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v~ 124 (236)
...|.|.+++.+|+|.|+|.+.|..+.. ..+.|.|.
T Consensus 46 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 82 (90)
T cd05726 46 TGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVT 82 (90)
T ss_pred CCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEe
Confidence 4479999999999999999999987654 66777776
No 195
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.16 E-value=1.2e-05 Score=47.84 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=27.7
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLT 122 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~ 122 (236)
...|.|.+++.+|+|.|+|.+.|..+.. ..+.|.
T Consensus 34 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 68 (69)
T cd05725 34 DKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLT 68 (69)
T ss_pred CCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence 4579999999999999999999987654 444444
No 196
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.15 E-value=6.2e-06 Score=49.48 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCc-eeEEEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQ-AHYIYLTVV 124 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~v~ 124 (236)
...|.|.+++.+|+|.|+|.|.|..+. ...+.+++.
T Consensus 34 ~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 34 GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 468999999999999999999998754 355555543
No 197
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.15 E-value=4.4e-05 Score=50.84 Aligned_cols=79 Identities=20% Similarity=0.356 Sum_probs=49.9
Q ss_pred CCcEEEecCCeEEEEeEEeeCC---C-CCCeEEEeecCe-----E-Eeee--------cCCCceEEEeecCcceEEEEEE
Q psy10361 146 GPEVFIENGSTINLTCVVRFSP---E-PPAYIFWNHNEA-----I-ISYD--------SQRGGVNVITEKGETTVSYLLI 207 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p---~-p~~~v~W~~~~~-----~-~~~~--------~~~~~~~~~~~~~~~~~~~L~i 207 (236)
|..+.+..|+++.|.|.....+ . ....+.|++... . +... ...++..+..+ ......+|.|
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~-~~~~~~sL~I 84 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGD-LGKKNCSLLI 84 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecC-CCCCEEEEEE
Confidence 4567888999999999875321 0 124689997542 1 1100 11123333211 1234568999
Q ss_pred cccCCCCCeEEEEEeCCC
Q psy10361 208 QKARPSDNGKYQCNPANS 225 (236)
Q Consensus 208 ~~v~~~d~G~y~C~a~n~ 225 (236)
.+++.+|+|.|.|.++..
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999998654
No 198
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.15 E-value=1.2e-05 Score=53.05 Aligned_cols=37 Identities=22% Similarity=0.453 Sum_probs=32.9
Q ss_pred cceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEEe
Q psy10361 23 QRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVR 59 (236)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~~ 59 (236)
+|+.+......++.+|.|++++.+|+|.|.|.+.+..
T Consensus 67 ~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~p 103 (116)
T cd05879 67 ERIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNPP 103 (116)
T ss_pred CceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcCC
Confidence 4888887777789999999999999999999999754
No 199
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.15 E-value=1.1e-05 Score=51.92 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=30.7
Q ss_pred cceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEEe
Q psy10361 23 QRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVR 59 (236)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~~ 59 (236)
+|.++.......+.+|.|++++.+|+|.|.|.+....
T Consensus 51 ~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p 87 (100)
T cd05888 51 GRVRFETPNPIADGALILRNAVQADEGKYKCRVITFP 87 (100)
T ss_pred CcEEEeCCCCCCceEEEEecCccccceEEEEEEEeCC
Confidence 5777765545678999999999999999999998754
No 200
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.14 E-value=4.2e-05 Score=45.83 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=26.7
Q ss_pred EEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEE
Q psy10361 90 WTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLT 122 (236)
Q Consensus 90 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~ 122 (236)
..|.|.+++.+|+|.|+|.|.|..+.. ..+.|.
T Consensus 37 ~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 70 (71)
T cd05723 37 HNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLI 70 (71)
T ss_pred CCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence 358888999999999999999988764 445544
No 201
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.13 E-value=6.1e-05 Score=47.63 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=26.8
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYL 121 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l 121 (236)
...|.|.+++.+|+|.|+|.|.|..+.. ..+.+
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 90 (92)
T cd05737 57 YASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTV 90 (92)
T ss_pred EEEEEEccCChhhCEEEEEEEEECCCcceEEEEE
Confidence 4579999999999999999999987654 44443
No 202
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.13 E-value=5.7e-05 Score=45.88 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTV 123 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v 123 (236)
...|.|.+++.+|+|.|+|.|.|..+.. ..+.|.|
T Consensus 40 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 40 SGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 4579999999999999999999987654 5555554
No 203
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.13 E-value=5.4e-05 Score=45.73 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce--eEEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA--HYIYLTV 123 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~l~v 123 (236)
++.|.|.+++.+|+|.|+|.|.|..+.. ..+.|.|
T Consensus 37 ~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 37 SGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 4579999999999999999999988753 4455544
No 204
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.13 E-value=4.8e-06 Score=53.42 Aligned_cols=58 Identities=17% Similarity=0.332 Sum_probs=40.1
Q ss_pred CeeEeeCC---eEEE-EecceEecCCcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEE
Q psy10361 1 VSFVRHRD---IHLL-TTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFV 58 (236)
Q Consensus 1 v~w~~~~~---~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~ 58 (236)
+.|++... ..++ ..+........|+.+........++|.|.+++.+|+|.|.|.+...
T Consensus 25 ~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 86 (98)
T cd05716 25 KYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDD 86 (98)
T ss_pred eEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccC
Confidence 46887642 2222 2222222345788887655667899999999999999999988753
No 205
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.11 E-value=8.6e-06 Score=52.88 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=32.0
Q ss_pred CCcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEEe
Q psy10361 21 NDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVR 59 (236)
Q Consensus 21 ~~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~~ 59 (236)
...|+.+........++|.|.+++.+|+|.|.|.+....
T Consensus 52 ~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~ 90 (105)
T cd00099 52 VKGRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLSG 90 (105)
T ss_pred CCCcEEEEEeccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 456888776544478999999999999999999998644
No 206
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.10 E-value=1.1e-05 Score=48.06 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=25.2
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA 116 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 116 (236)
...|.|.+++.+|+|.|+|.|.|..+..
T Consensus 35 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 62 (69)
T cd05746 35 EGYLAIRDVGVADQGRYECVARNTIGYA 62 (69)
T ss_pred CCEEEECcCChhhCEEEEEEEECCCCcE
Confidence 4579999999999999999999988765
No 207
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.08 E-value=2.6e-05 Score=49.92 Aligned_cols=78 Identities=15% Similarity=0.248 Sum_probs=46.7
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEeecCe----EEeee----------cCCCceEEEeecCcceEEEEEEcccCCCCCeEEE
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNHNEA----IISYD----------SQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQ 219 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~~~~----~~~~~----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~ 219 (236)
|++++|.|...... ....+.|++... .+... ...++.... ......++|.|.+++.+|+|.|.
T Consensus 1 G~~vtL~C~~~~~~-~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~sL~I~nv~~~D~G~Y~ 77 (97)
T cd05846 1 GGNVTLSCNLTLPE-EVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSIT--SLGLNSTSITIWNVTLEDEGCYK 77 (97)
T ss_pred CCcEEEEEEeCCCC-eeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEc--CCCCCccEEEEeCCceeeeEEEE
Confidence 78899999875432 223699997431 11110 001222221 11224568999999999999999
Q ss_pred EEeCCC-CC---ceEEEEE
Q psy10361 220 CNPANS-QA---KSVMVNV 234 (236)
Q Consensus 220 C~a~n~-~g---~~~~~~v 234 (236)
|.+... .| ..+.|.|
T Consensus 78 C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 78 CIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEEEeCCCCCeeeEEEEEE
Confidence 997644 34 3445555
No 208
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.08 E-value=4.8e-05 Score=50.39 Aligned_cols=77 Identities=23% Similarity=0.394 Sum_probs=49.9
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecC--eE---Eee------ecCCCceEEEeecCcceEEEEEEcccCCCC
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNE--AI---ISY------DSQRGGVNVITEKGETTVSYLLIQKARPSD 214 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~--~~---~~~------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d 214 (236)
+..+.+..|+++.|.|...... ....+.|++.. .. +.. ....++.....+ ......+|.|.+++.+|
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~-~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~~~~~D 83 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSW-TNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQ-KAQKSISLTISALQLED 83 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCC-CceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEe-ccCCEEEEEECCCCHHH
Confidence 3456788999999999986532 23479999842 11 110 011233333221 12235689999999999
Q ss_pred CeEEEEEeCC
Q psy10361 215 NGKYQCNPAN 224 (236)
Q Consensus 215 ~G~y~C~a~n 224 (236)
+|.|.|.+..
T Consensus 84 sg~Y~C~~~~ 93 (116)
T cd07706 84 SAKYFCALST 93 (116)
T ss_pred CEEEEEEEEC
Confidence 9999999884
No 209
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.07 E-value=5.7e-05 Score=46.99 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=43.0
Q ss_pred CCCCCCeeEEEEEEEEecceeEEecceeeEEecCCcEEEEcC-CCCCcEEEEEcCCCCCCCEEEEEEeecCCCce-eEEE
Q psy10361 43 PQHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINN-PTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIY 120 (236)
Q Consensus 43 ~~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~ 120 (236)
+..++.-.+.|.+.....+ .+.|.+++....... -......|.|.+++.+|+|.|+|.|.|..+.. ..+.
T Consensus 11 ~~~G~~~~l~C~~~g~p~p--------~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05728 11 ADIGSSLRWECKASGNPRP--------AYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASAE 82 (85)
T ss_pred EcCCCcEEEEEEeeEeCCC--------EEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEE
Confidence 3457777888876643222 233433332110000 00123479999999999999999999988754 4444
Q ss_pred EE
Q psy10361 121 LT 122 (236)
Q Consensus 121 l~ 122 (236)
|.
T Consensus 83 l~ 84 (85)
T cd05728 83 LA 84 (85)
T ss_pred EE
Confidence 44
No 210
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.06 E-value=1.1e-05 Score=53.04 Aligned_cols=38 Identities=34% Similarity=0.548 Sum_probs=33.2
Q ss_pred CCcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEE
Q psy10361 21 NDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFV 58 (236)
Q Consensus 21 ~~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~ 58 (236)
...|+.+.......+++|.|.+++.+|+|.|.|.+...
T Consensus 64 ~~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 64 YSGRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp ETTTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEES
T ss_pred eeeeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEEC
Confidence 45688888877778999999999999999999999865
No 211
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.06 E-value=7e-05 Score=47.73 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEE
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLT 122 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~ 122 (236)
....|.|.+++.+|+|.|.|.|.|..+.. ..+.|.
T Consensus 60 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~ 95 (96)
T cd05732 60 RVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLE 95 (96)
T ss_pred cEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEe
Confidence 34689999999999999999999988754 445444
No 212
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.06 E-value=2.9e-05 Score=48.34 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=26.9
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce--eEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA--HYIYLT 122 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~l~ 122 (236)
...|.|.+++.+|+|.|+|.+.|..+.. ..+.|.
T Consensus 50 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 85 (86)
T cd05724 50 DGNLLIAEARKSDEGTYKCVATNMVGERESAAARLS 85 (86)
T ss_pred CCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEE
Confidence 4579999999999999999999987643 444443
No 213
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.06 E-value=8.7e-06 Score=53.97 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=39.3
Q ss_pred CeeEeeC---CeEEEEe-cce-EecCCcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEE
Q psy10361 1 VSFVRHR---DIHLLTT-GRY-TYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSF 57 (236)
Q Consensus 1 v~w~~~~---~~~~~~~-~~~-~~~~~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~ 57 (236)
|.|++.. ...++.. ... .....+||.+.......+++|.|.+++.+|+|.|.|.+..
T Consensus 32 v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 32 IFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFCALST 93 (116)
T ss_pred EEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEEC
Confidence 4799864 2233322 211 1134578888754455689999999999999999999885
No 214
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.06 E-value=9.5e-05 Score=45.04 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=24.7
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA 116 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 116 (236)
...|.|.+++.+|+|.|.|.+.|..+..
T Consensus 37 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 64 (77)
T cd05760 37 ERTLTLRSAGPDDSGLYYCCAHNAFGSV 64 (77)
T ss_pred CCEEEEeeCCcccCEEEEEEEEeCCCeE
Confidence 3579999999999999999999987653
No 215
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.06 E-value=0.00012 Score=46.13 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=45.5
Q ss_pred CCCCCCeeEEEEEEEEecceeEEecceeeEEecCCcEEEEc-----CCCCCcEEEEEcCCCCCCCEEEEEEeecCCCce-
Q psy10361 43 PQHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVIN-----NPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA- 116 (236)
Q Consensus 43 ~~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~- 116 (236)
+..++.....|.+.... ...+.|..++...... ........|.|.+++.+|.|.|+|.|.|..+..
T Consensus 12 v~~G~~v~l~C~~~G~P--------~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~ 83 (90)
T cd04972 12 VYEGGTATIRCTAEGSP--------LPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQAN 83 (90)
T ss_pred EcCCCcEEEEEEEEEcC--------CCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCcee
Confidence 44677777888776322 2234444443322110 011235689999999999999999999988764
Q ss_pred eEEEEE
Q psy10361 117 HYIYLT 122 (236)
Q Consensus 117 ~~~~l~ 122 (236)
..+.|.
T Consensus 84 ~~~~L~ 89 (90)
T cd04972 84 VSVQVT 89 (90)
T ss_pred EEEEEe
Confidence 555554
No 216
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.05 E-value=6.3e-05 Score=45.60 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=29.3
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEE
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTV 123 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v 123 (236)
....|.|.+++.+|+|.|+|.|.|..+.. ..+.|.|
T Consensus 39 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 39 DGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred cCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 34689999999999999999999987654 5555555
No 217
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.04 E-value=1.8e-05 Score=50.75 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=36.8
Q ss_pred CeeEeeCC---eE-EEEecceE-ecCCcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEE
Q psy10361 1 VSFVRHRD---IH-LLTTGRYT-YTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSF 57 (236)
Q Consensus 1 v~w~~~~~---~~-~~~~~~~~-~~~~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~ 57 (236)
+.|+++.. .. ++...... ....+||.... .....+|.|.+++++|+|.|.|.+..
T Consensus 25 i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 84 (98)
T cd04984 25 VNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSK--SGNTASLTISGAQTEDEADYYCQVWD 84 (98)
T ss_pred EEEEEECCCCCccEEEEeccccCCCCCCCEEEEc--cCCEEEEEECCCChhhCEEEEEEEcc
Confidence 47998753 22 33222211 12346787655 34678999999999999999999863
No 218
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.04 E-value=2.1e-05 Score=49.90 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=43.9
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
.+.+.|.|.+.+...+...+.|.+++..+.............++.....+.|.+..-...+...|+|.+....
T Consensus 14 ~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 14 SETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred CCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence 4568999999986323468999999987632111111111122223344566565444445669999998765
No 219
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.04 E-value=1.5e-05 Score=47.64 Aligned_cols=35 Identities=34% Similarity=0.515 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTV 123 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v 123 (236)
...|.|.+++.+|+|.|+|.|.|..+.. ..+.|.|
T Consensus 35 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 35 NKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4589999999999999999999988654 4444444
No 220
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.03 E-value=0.0001 Score=44.82 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTV 123 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v 123 (236)
...|.|.+++.+|+|.|+|.|.|..+.. ..+.|.|
T Consensus 40 ~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 40 GDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 3478999999999999999999988754 6666665
No 221
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.03 E-value=0.00013 Score=46.68 Aligned_cols=34 Identities=41% Similarity=0.542 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLT 122 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~ 122 (236)
...|.|.+++.+|+|.|+|.|.|..+.. ..+.|.
T Consensus 62 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 96 (97)
T cd05869 62 VSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLE 96 (97)
T ss_pred EEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEE
Confidence 3689999999999999999999988765 555554
No 222
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.03 E-value=3.9e-05 Score=53.88 Aligned_cols=74 Identities=18% Similarity=0.334 Sum_probs=49.3
Q ss_pred cEEEecCCeEEEEeEEe-eCCCCCCeEEEeecCeEEeeecC---------CCceEEEeecCcceEEEEEEcccCCCCCeE
Q psy10361 148 EVFIENGSTINLTCVVR-FSPEPPAYIFWNHNEAIISYDSQ---------RGGVNVITEKGETTVSYLLIQKARPSDNGK 217 (236)
Q Consensus 148 ~~~~~~g~~~~l~C~~~-~~p~p~~~v~W~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 217 (236)
...+.+|+++.|.|... +. ..+.+.|++....+..... ++++...... ...+.|.|.+++.+|+|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~--~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s--~~~StItIknVt~sDeGc 99 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSF--NSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKS--FNESTILIKNVSLKDNGC 99 (189)
T ss_pred EEEEcCCCCEEEEEecCCCC--ccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccC--CCcceEEEEeCChhhCeE
Confidence 56778999999999984 33 3458999997543322111 1222221111 144689999999999999
Q ss_pred EEEEeCCC
Q psy10361 218 YQCNPANS 225 (236)
Q Consensus 218 y~C~a~n~ 225 (236)
|.|...--
T Consensus 100 Y~C~F~tf 107 (189)
T PHA02987 100 YTCIFNTL 107 (189)
T ss_pred EEEEEEec
Confidence 99996544
No 223
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.03 E-value=0.00012 Score=48.60 Aligned_cols=78 Identities=15% Similarity=0.360 Sum_probs=47.7
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCe---E--Eeee-c----------CCCceEEEeecCcceEEEEEEcc
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEA---I--ISYD-S----------QRGGVNVITEKGETTVSYLLIQK 209 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~---~--~~~~-~----------~~~~~~~~~~~~~~~~~~L~i~~ 209 (236)
+....+.+|++++|.|.......-...+.|++... + +... . ..++.....+. ......|.|.+
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~-~~~~~~L~I~~ 82 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDT-SKSTVYLQLNS 82 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEc-cCCEEEEEECC
Confidence 44567889999999998754311123699997431 1 1100 0 01222221111 12335799999
Q ss_pred cCCCCCeEEEEEeCC
Q psy10361 210 ARPSDNGKYQCNPAN 224 (236)
Q Consensus 210 v~~~d~G~y~C~a~n 224 (236)
+..+|+|.|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999999865
No 224
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.03 E-value=2.5e-05 Score=51.68 Aligned_cols=37 Identities=27% Similarity=0.250 Sum_probs=29.8
Q ss_pred cceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEEe
Q psy10361 23 QRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVR 59 (236)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~~ 59 (236)
.|+.+.......+.+|.|.+++++|+|.|.|.+.+..
T Consensus 66 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~ 102 (115)
T cd05880 66 GRVVWDGNIMRRDASILIWQLQPTDNGTYTCQVKNPP 102 (115)
T ss_pred CeEEEecCCcCCceEEEEeeCChhhCEEEEEEEEeCC
Confidence 3555554455678999999999999999999998754
No 225
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.02 E-value=0.00012 Score=46.43 Aligned_cols=78 Identities=18% Similarity=0.312 Sum_probs=48.5
Q ss_pred CeEEEEeEEeeCCCCCCeEEEeecC----eEEeee----------cCCCceEEEeecCcceEEEEEEcccCCCCCeEEEE
Q psy10361 155 STINLTCVVRFSPEPPAYIFWNHNE----AIISYD----------SQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC 220 (236)
Q Consensus 155 ~~~~l~C~~~~~p~p~~~v~W~~~~----~~~~~~----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C 220 (236)
++++|.|.....+ ....+.|.+.. ..+... .-.+++.+. .......+|.|.+++.+|.|.|.|
T Consensus 1 ~~vtL~C~~~~~~-~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~--~~~~~d~sl~i~nv~~~D~G~Y~C 77 (96)
T cd05887 1 KNVTLKCRIQVNE-TITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK--NYSLLDATIMLENVGFSDIGVYIC 77 (96)
T ss_pred CCEEEEEEecCCC-cEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc--CCCCCccEEEEeCCCccccEEEEE
Confidence 4689999986532 44589998742 222211 112344443 112245689999999999999999
Q ss_pred EeC-CCCC---ceEEEEEc
Q psy10361 221 NPA-NSQA---KSVMVNVL 235 (236)
Q Consensus 221 ~a~-n~~g---~~~~~~v~ 235 (236)
.+. .+.| +++.|.|+
T Consensus 78 ~v~tfP~G~~~~~~~l~~~ 96 (96)
T cd05887 78 KAVTFPLGNTQSSTTVTVL 96 (96)
T ss_pred EEEeCCCCCeeEEEEEEEC
Confidence 964 4456 44455553
No 226
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.02 E-value=5.1e-05 Score=46.50 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=23.2
Q ss_pred EEEEEcCCCCCCCEEEEEEeecCCCc
Q psy10361 90 WTLQLKYPQHKDTGIYECQVSTTPHQ 115 (236)
Q Consensus 90 ~~L~i~~~~~~d~G~Y~C~~~~~~~~ 115 (236)
..|.|.+++.+|+|.|+|.+.|..+.
T Consensus 45 ~~L~I~~~~~~DsG~Y~C~a~n~~g~ 70 (79)
T cd04973 45 EEVQIKDAVPRDSGLYACVTSSPSGS 70 (79)
T ss_pred CEEEECCCChhhCEEEEEEEeCCCCc
Confidence 37999999999999999999987654
No 227
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.02 E-value=7.4e-05 Score=48.09 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=29.9
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVV 124 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v~ 124 (236)
...|.|.+++.+|+|.|+|.|.|..+.. ..+.|.|.
T Consensus 64 ~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~ 100 (101)
T cd04975 64 VSELKLVRLKESEAGTYTFLASNSDASKSLTFELYVN 100 (101)
T ss_pred EEEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence 4679999999999999999999988754 55666654
No 228
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.01 E-value=3.8e-05 Score=48.78 Aligned_cols=37 Identities=22% Similarity=0.468 Sum_probs=30.0
Q ss_pred CcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEEe
Q psy10361 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVR 59 (236)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~~ 59 (236)
..|+.+.... ..+.+|.|.+++.+|+|.|.|.+....
T Consensus 47 ~~Rv~f~~~~-~~d~sI~i~nvt~~D~G~Y~C~~~t~P 83 (96)
T cd05889 47 RGRVYFLNST-REDMSLSFNNATEEDVGLYCCSLVTYP 83 (96)
T ss_pred cCeEEEecCC-CCccEEEEcCCCcccCEEEEEEEEeCC
Confidence 3677776543 368999999999999999999998654
No 229
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.01 E-value=2.6e-05 Score=49.95 Aligned_cols=37 Identities=27% Similarity=0.495 Sum_probs=30.8
Q ss_pred CcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEEe
Q psy10361 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVR 59 (236)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~~ 59 (236)
.+|+.+. .....+.+|.|++++.+|+|.|.|.+....
T Consensus 50 ~~Rv~f~-~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P 86 (99)
T cd05886 50 RERVTFK-NPSFEDGTISLSRLELEDEGVYICEFATFP 86 (99)
T ss_pred cCcEEEc-CCCCCcceEEEcCCccccCEEEEEEEEeCC
Confidence 4677776 345588999999999999999999999843
No 230
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.01 E-value=7.2e-05 Score=47.11 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=29.2
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTV 123 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v 123 (236)
...|.|.+++.+|+|.|+|.|.|..+.. ..+.|.|
T Consensus 54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V 89 (90)
T cd04974 54 SEVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV 89 (90)
T ss_pred cceEEEeccccccCcEEEEEeecccCcccCCEEEEe
Confidence 3579999999999999999999988754 5566665
No 231
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.00 E-value=7.2e-05 Score=47.10 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=28.9
Q ss_pred EEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEE
Q psy10361 90 WTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTV 123 (236)
Q Consensus 90 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v 123 (236)
..|.|.+++.+|+|.|+|.|.|..+.. ..+.|.|
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 89 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV 89 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEE
Confidence 579999999999999999999988754 5566665
No 232
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.00 E-value=2e-05 Score=51.29 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCCCCCCeeEEEEEEEE
Q psy10361 31 PTSDDWTLQLKYPQHKDTGIYECQVSFV 58 (236)
Q Consensus 31 ~~~~~~~L~i~~~~~~D~G~Y~C~v~~~ 58 (236)
....+.+|+|.+++.+|+|.|.|.+.+.
T Consensus 63 ~~~~~~sL~I~~v~~sD~G~Y~C~v~~~ 90 (106)
T cd05714 63 ADPGDASLVITDLRLEDSGRYRCEVIDG 90 (106)
T ss_pred CCCCcceEEECCCCHHHCEEEEEEEEcC
Confidence 3557899999999999999999999864
No 233
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.99 E-value=5.7e-05 Score=47.90 Aligned_cols=70 Identities=16% Similarity=0.219 Sum_probs=41.3
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
++.+.|.|.+.|..-+...+.|.+++..+.............+......+.|.+. ..+...|+|.+.+..
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~---~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVP---PEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEEC---CCCCCEEEEEEEeCC
Confidence 6789999999996323458999999863322111111111111222333445443 447789999997765
No 234
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.99 E-value=2.2e-05 Score=51.25 Aligned_cols=35 Identities=20% Similarity=0.479 Sum_probs=28.9
Q ss_pred CcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEE
Q psy10361 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56 (236)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~ 56 (236)
.+||..........+.|+|.+++++|+|.|.|...
T Consensus 58 ~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~ 92 (107)
T cd07700 58 QEKFSIRVTSDSSRYRLHINRVKPEDSGTYFCMTV 92 (107)
T ss_pred cCcEEEEEECCCCEEEEEECCCCHHHCEEEEEeEc
Confidence 46887765555567899999999999999999974
No 235
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=97.99 E-value=8.5e-05 Score=47.83 Aligned_cols=77 Identities=16% Similarity=0.189 Sum_probs=48.3
Q ss_pred EcCCCCCCCeeEEEEEEEEecceeEEecceeeEEecCCcEEEEcC-----------CCCCcEEEEEcCCCCCCCEEEEEE
Q psy10361 40 LKYPQHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINN-----------PTSDDWTLQLKYPQHKDTGIYECQ 108 (236)
Q Consensus 40 i~~~~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~L~i~~~~~~d~G~Y~C~ 108 (236)
+..+..++.-.+.|.+.-... ..+.|.++++...... .......|.|.+++.+|+|.|+|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~--------P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~ 83 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPP--------PQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTAL 83 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCC--------CceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEE
Confidence 334555677788887765432 2345555543321100 001235799999999999999999
Q ss_pred eecCCCce-eEEEEEEE
Q psy10361 109 VSTTPHQA-HYIYLTVV 124 (236)
Q Consensus 109 ~~~~~~~~-~~~~l~v~ 124 (236)
|.|..+.. ..+.|.|.
T Consensus 84 A~N~~g~~~~t~~l~V~ 100 (101)
T cd05859 84 AQNEDAVKSYTFALQIQ 100 (101)
T ss_pred EEcCCceEEEEEEEEEE
Confidence 99987653 55666654
No 236
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=97.98 E-value=0.00021 Score=45.86 Aligned_cols=36 Identities=19% Similarity=0.365 Sum_probs=27.9
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecCCCc-eeEEEEEE
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTTPHQ-AHYIYLTV 123 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~v 123 (236)
+..+|.|.+++.+|+|.|+|.+.+.... ...+.|+|
T Consensus 63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 63 GSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred CcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 5678999999999999999999876543 24444443
No 237
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=97.98 E-value=7.2e-05 Score=46.03 Aligned_cols=33 Identities=33% Similarity=0.602 Sum_probs=26.9
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYL 121 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l 121 (236)
...|.|.+++.+|+|.|+|.+.|..+.. ..+.|
T Consensus 47 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 47 KWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred eEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence 4689999999999999999999987643 44443
No 238
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.98 E-value=6.2e-05 Score=48.81 Aligned_cols=70 Identities=21% Similarity=0.330 Sum_probs=44.9
Q ss_pred EecCCeEEEEeEEeeCCCCCCeEEEeecCeE-------EeeecC------------CCceEEEeecCcceEEEEEEcccC
Q psy10361 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAI-------ISYDSQ------------RGGVNVITEKGETTVSYLLIQKAR 211 (236)
Q Consensus 151 ~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~-------~~~~~~------------~~~~~~~~~~~~~~~~~L~i~~v~ 211 (236)
+.+|++++|.|..... ....+.|++.... +..... ..+... .. ......|.|.+++
T Consensus 3 v~~G~~vtL~C~~~~~--~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~--~~-~~~~~~L~I~~~~ 77 (104)
T cd05720 3 AELGQKVELKCEVLNS--SPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSG--SR-SSNSFVLTLKNFQ 77 (104)
T ss_pred ccCCCeEEEEEEecCC--CCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEE--Ee-cCCEEEEEECCCC
Confidence 5679999999988654 2247999975421 111110 011111 11 1245679999999
Q ss_pred CCCCeEEEEEeCCC
Q psy10361 212 PSDNGKYQCNPANS 225 (236)
Q Consensus 212 ~~d~G~y~C~a~n~ 225 (236)
.+|+|.|.|.+.+.
T Consensus 78 ~sDsgtY~Ca~~~~ 91 (104)
T cd05720 78 KENEGYYFCSVASN 91 (104)
T ss_pred HHHCEEEEEEEccC
Confidence 99999999998754
No 239
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.97 E-value=2.1e-05 Score=52.43 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=30.8
Q ss_pred CcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEE
Q psy10361 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSF 57 (236)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~ 57 (236)
.+||.+......++++|.|.+++++|+|.|.|.+..
T Consensus 66 ~gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~ 101 (119)
T cd05712 66 RGRFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVEL 101 (119)
T ss_pred cccEEEecCCCCCEEEEEEccCChhhCeEEEEEEEc
Confidence 468888765567889999999999999999998865
No 240
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=97.97 E-value=0.00016 Score=44.84 Aligned_cols=36 Identities=25% Similarity=0.404 Sum_probs=28.8
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCC---ceeEEEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPH---QAHYIYLTVV 124 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~ 124 (236)
...|.|.+++.+|+|.|.|.+.+... ....+.++|.
T Consensus 45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~ 83 (84)
T cd05861 45 RSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH 83 (84)
T ss_pred EEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence 56899999999999999999988653 3356666664
No 241
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.97 E-value=2.7e-05 Score=51.05 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=28.3
Q ss_pred CcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEE
Q psy10361 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSF 57 (236)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~ 57 (236)
.+||..... ....++|.|.+++++|+|.|.|.+..
T Consensus 59 ~~r~~~~~~-~~~~~~L~I~~~~~~Dsg~Y~Ca~~~ 93 (110)
T cd05899 59 KDRFSASRP-SLTRSSLTIKSAEPEDSAVYLCASSL 93 (110)
T ss_pred CCceEEECc-CCCccEEEECCCChhhCEEEEEEeeC
Confidence 467776553 22678999999999999999999875
No 242
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=97.97 E-value=0.00012 Score=44.67 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=25.3
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecCCCce
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTTPHQA 116 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 116 (236)
....|.|.+++.+|+|.|+|.+.|..+..
T Consensus 40 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 68 (78)
T cd05743 40 GYGTLTIRDVKESDQGAYTCEAINTRGMV 68 (78)
T ss_pred CEEEEEECCCChHHCEEEEEEEEecCCEE
Confidence 34689999999999999999999987644
No 243
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.96 E-value=2.9e-05 Score=47.40 Aligned_cols=66 Identities=12% Similarity=0.222 Sum_probs=41.6
Q ss_pred CCCCCeeEEEEEEEEecceeEEecceeeEEecCCcEEEEcCCCCCcEEEEEcCCCCCCCEEEEEEeecCCCceeEEEEEE
Q psy10361 44 QHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTV 123 (236)
Q Consensus 44 ~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v 123 (236)
..+|.-...|.+..... ...+.|.+++..... ....|.|.++ .+|+|.|+|.+.+. ..+..+.|+|
T Consensus 13 ~~G~~V~L~C~~~~~p~-------~~~~~W~kng~~l~~-----~~~~l~i~~~-~~dsG~Y~C~a~~~-~~S~~v~l~V 78 (78)
T cd05752 13 FQGEKVTLTCNGFNSPE-------QNSTQWYHNGKLLET-----TTNSYRIRAA-NNDSGEYRCQTQGS-SLSDPVHLEV 78 (78)
T ss_pred eCCCCEEEEEeCCCCCC-------CccEEEEECCEEeec-----cCCeEEEeec-ccCCEEeEEECCCC-cCCCCEEEeC
Confidence 35677777777653211 112456666544321 3557999999 99999999999876 3444455543
No 244
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.96 E-value=2.3e-05 Score=50.50 Aligned_cols=73 Identities=15% Similarity=0.164 Sum_probs=44.1
Q ss_pred cCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEE-Ee---ecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 153 NGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNV-IT---EKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 153 ~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
.++.++|.|.+.|...+...+.|++++..+.... ...... .. +..+...+.|.+..-...+...|+|.+....
T Consensus 15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~-~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 15 LQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQK-YVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred cCCceEEEEEEeeEeCCCCEEEEEECCEECCccc-ccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence 4678999999998642445789999998764311 001111 11 1223344566664433345568999998765
No 245
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.95 E-value=3e-05 Score=51.00 Aligned_cols=74 Identities=11% Similarity=0.083 Sum_probs=45.0
Q ss_pred cCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEee-cCcceEEEEEEcccCCCC-CeEEEEEeCCCC
Q psy10361 153 NGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITE-KGETTVSYLLIQKARPSD-NGKYQCNPANSQ 226 (236)
Q Consensus 153 ~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~d-~G~y~C~a~n~~ 226 (236)
.++.+.|.|.+.+...+...+.|++++..+.............. ..+...+.|.+..-...+ ...|+|.+....
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g 92 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYG 92 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeC
Confidence 45678999999986323358999999988753211111222222 123445667666544434 459999987664
No 246
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=97.93 E-value=0.00025 Score=44.79 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=26.9
Q ss_pred EEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEE
Q psy10361 90 WTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLT 122 (236)
Q Consensus 90 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~ 122 (236)
..|.|.+++.+|+|.|+|.+.|..+.. ..+.|.
T Consensus 58 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~ 91 (92)
T cd05891 58 ASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVS 91 (92)
T ss_pred EEEEECCCChhhCEEEEEEEEeCCCceeeEEEEE
Confidence 579999999999999999999987654 444443
No 247
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=97.93 E-value=8.6e-05 Score=46.06 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTV 123 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v 123 (236)
...|.|.+++.+|+|.|+|.+.|..+.. ....|.|
T Consensus 48 ~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v 83 (84)
T cd05742 48 SSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI 83 (84)
T ss_pred EEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence 4689999999999999999999987643 4555544
No 248
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=97.92 E-value=0.00028 Score=44.60 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=25.2
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA 116 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 116 (236)
...|.|.+++.+|+|.|.|.+.|..+..
T Consensus 58 ~~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 85 (92)
T cd05747 58 KSTFEISKVQMSDEGNYTVVVENSEGKQ 85 (92)
T ss_pred eeEEEECCCCcccCEeEEEEEEcCCCCE
Confidence 4689999999999999999999988754
No 249
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=97.91 E-value=4.9e-05 Score=48.64 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=26.7
Q ss_pred CcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEE
Q psy10361 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSF 57 (236)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~ 57 (236)
..|..+... ...+.+|+|.+++.+|+|.|.|.+..
T Consensus 49 ~~R~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C~v~~ 83 (98)
T cd05718 49 EGRVSFLNS-SLEDATISISNLRLEDEGNYICEFAT 83 (98)
T ss_pred CceEEEeCC-CCCceEEEEccCCcccCEEEEEEEEe
Confidence 345544442 22688999999999999999999874
No 250
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=97.91 E-value=7.7e-05 Score=45.28 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=29.8
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVV 124 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v~ 124 (236)
...|.|.+++.+|.|.|+|.+.|..+.. ..+.|.|.
T Consensus 38 ~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 38 GSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 3479999999999999999999988765 56666664
No 251
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=97.91 E-value=3.9e-05 Score=48.46 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecCCC
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTTPH 114 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 114 (236)
.+..|.|.+++.+|+|.|+|.+.+..+
T Consensus 50 ~~~~L~I~~v~~~DsG~YtC~~~n~~~ 76 (92)
T cd05757 50 KGSKLLIQNVTEEDAGNYTCKLTFTHN 76 (92)
T ss_pred cCCEEEEeeCChhhCEEEEEEEEecCC
Confidence 356899999999999999999998764
No 252
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.90 E-value=7.4e-05 Score=43.86 Aligned_cols=66 Identities=26% Similarity=0.397 Sum_probs=44.4
Q ss_pred EEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 157 ~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
+.|.|.+.+. +...+.|++++......... ..............|.+.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~--~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGP--PPPTITWLKNGKPLPSSVLT--RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCC--CCCcEEEEECCEECCCcccE--EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 3689999874 55699999988655321100 001111222345689999999999999999998875
No 253
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.90 E-value=7.4e-05 Score=48.97 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=29.1
Q ss_pred cceEEeec-CCCCceEEEEcCCCCCCCeeEEEEEEEE
Q psy10361 23 QRFRVINN-PTSDDWTLQLKYPQHKDTGIYECQVSFV 58 (236)
Q Consensus 23 ~r~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~v~~~ 58 (236)
.|+.+... ....+.+|+|.+++.+|+|.|.|.+..-
T Consensus 60 ~R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g 96 (112)
T cd05900 60 DRVSLPNYPAIPSDATLEITELRSNDSGTYRCEVMHG 96 (112)
T ss_pred CeEEecccCCCCCCcEEEEeecccccCEEEEEEEecC
Confidence 47777542 2447899999999999999999999843
No 254
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.90 E-value=1.2e-05 Score=50.82 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=26.3
Q ss_pred CcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEEe
Q psy10361 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVR 59 (236)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~~ 59 (236)
..|+.+.. +.+|+|.+++.+|+|.|.|++....
T Consensus 48 ~~R~~~~~-----~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 48 SGRETIYP-----NGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCeEEEcC-----CceEEEccCCchhcEEEEEEEEcCC
Confidence 34555543 4799999999999999999998654
No 255
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.90 E-value=4.6e-05 Score=49.93 Aligned_cols=58 Identities=17% Similarity=0.370 Sum_probs=38.4
Q ss_pred CeeEeeC---CeEEE-EecceEe---cCCcceEEeec-CCCCceEEEEcCCCCCCCeeEEEEEEEE
Q psy10361 1 VSFVRHR---DIHLL-TTGRYTY---TNDQRFRVINN-PTSDDWTLQLKYPQHKDTGIYECQVSFV 58 (236)
Q Consensus 1 v~w~~~~---~~~~~-~~~~~~~---~~~~r~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~v~~~ 58 (236)
|.|++.. ...++ ..++... ...+|+.+... ....+.+|+|++++.+|+|.|.|.+...
T Consensus 29 i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~sD~G~Y~C~v~~~ 94 (110)
T cd05878 29 IKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRSSDSGVYRCEVMHG 94 (110)
T ss_pred EEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCChhhCEEEEEEEEeC
Confidence 5798863 22322 3333321 22357776542 3457899999999999999999999864
No 256
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.89 E-value=5.8e-05 Score=47.93 Aligned_cols=71 Identities=14% Similarity=0.162 Sum_probs=40.9
Q ss_pred cCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 153 NGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 153 ~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
.++.+.|.|.+.+...+...+.|.++|..+........ .....+.....+.|.+..-. ....|+|.+....
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~-~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSE-KDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEecc-EecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 35678999999986324568999999987643211111 11112222334455444321 2336999998744
No 257
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.89 E-value=3.6e-05 Score=48.85 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=27.6
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLT 122 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~ 122 (236)
...|.|.+++.+|+|.|+|.+.|..+.. ..+.|+
T Consensus 59 ~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~ 93 (94)
T cd05756 59 KDLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLT 93 (94)
T ss_pred CCeEEEccCCcccCeEEEEEEcCCCccEEEEEEEE
Confidence 3579999999999999999999987654 445554
No 258
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.88 E-value=3.6e-05 Score=50.26 Aligned_cols=37 Identities=24% Similarity=0.404 Sum_probs=29.9
Q ss_pred CCcceEEeecC-CCCceEEEEcCCCCCCCeeEEEEEEE
Q psy10361 21 NDQRFRVINNP-TSDDWTLQLKYPQHKDTGIYECQVSF 57 (236)
Q Consensus 21 ~~~r~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~v~~ 57 (236)
...|+.+...+ ...+.+|+|.+++.+|+|.|.|.+..
T Consensus 56 y~gRvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~ 93 (110)
T cd05902 56 FQGRVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVL 93 (110)
T ss_pred cccEEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEE
Confidence 44577776532 34689999999999999999999986
No 259
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.88 E-value=0.001 Score=42.30 Aligned_cols=47 Identities=26% Similarity=0.487 Sum_probs=34.1
Q ss_pred CcEEEEcCCCCCcEEEEEcCCCCCCCEEEEEEeecCCCceeEEEEEEE
Q psy10361 77 QRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVV 124 (236)
Q Consensus 77 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~ 124 (236)
+|+.+.... ..+.+|.|.+++.+|+|.|+|.+.+.+..+....+.|.
T Consensus 48 ~Rv~f~~~~-~~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~~ 94 (96)
T cd05889 48 GRVYFLNST-REDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEVV 94 (96)
T ss_pred CeEEEecCC-CCccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEEE
Confidence 455554322 25789999999999999999999988755544555554
No 260
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.88 E-value=0.00011 Score=47.85 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=29.6
Q ss_pred CcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEEe
Q psy10361 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVR 59 (236)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~~ 59 (236)
..|+.+.. ....+.+|+|.+++.+|+|.|.|.+.+..
T Consensus 55 ~~R~~~~~-~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~ 91 (106)
T cd05877 55 QGRVFLRR-AHDLDASLVITDLRLEDYGRYRCEVIDGL 91 (106)
T ss_pred cCcEEecC-CCCCcEEEEEccCChHHCEEEEEEEEecc
Confidence 46777754 24568899999999999999999997643
No 261
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.87 E-value=0.00022 Score=45.19 Aligned_cols=71 Identities=17% Similarity=0.103 Sum_probs=43.5
Q ss_pred cCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecC-cceEEEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 153 NGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKG-ETTVSYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 153 ~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
.|+.++|.|.+.+...+...+.|++++..+.......... ...++ ....+.|.+ ...+...|+|.+....-
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~-~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~l 84 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELI-PNGDWTYQILVMLET---TPSRGDTYTCVVEHSSL 84 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceE-ECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCCC
Confidence 4788999999998642445899999998864321111111 11222 233344544 34456699999988653
No 262
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.87 E-value=2.4e-05 Score=49.54 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=29.8
Q ss_pred CcceEEeecC-CCCceEEEEcCCCCCCCeeEEEEEEEEec
Q psy10361 22 DQRFRVINNP-TSDDWTLQLKYPQHKDTGIYECQVSFVRH 60 (236)
Q Consensus 22 ~~r~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~v~~~~~ 60 (236)
..|+...... ..++++|.|.+++.+|+|.|.|.+.+.++
T Consensus 50 ~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~v~~~~~ 89 (94)
T cd07690 50 NDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICEVEDKKE 89 (94)
T ss_pred CCCCceecccCCCCeEEEEECCCCHHHCEEEEEEECCccc
Confidence 4555554421 34578999999999999999999987654
No 263
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.87 E-value=0.0002 Score=46.84 Aligned_cols=74 Identities=14% Similarity=0.206 Sum_probs=45.7
Q ss_pred EEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeec-CcceEEEEEEcccCCCCCe-EEEEEeCCCC
Q psy10361 150 FIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEK-GETTVSYLLIQKARPSDNG-KYQCNPANSQ 226 (236)
Q Consensus 150 ~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~v~~~d~G-~y~C~a~n~~ 226 (236)
....|+.++|.|.+.+..-+...+.|+++|..+.... .......++ .+...+.|.+.. ...|.| .|+|.+....
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~--~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQ--PNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccc--cceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 4456888999999988632346899999998874311 111111111 233445666554 344444 6999998875
No 264
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=97.86 E-value=8e-05 Score=45.20 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=24.9
Q ss_pred CCceEEEEcCCCCCCCeeEEEEEEEEecc
Q psy10361 33 SDDWTLQLKYPQHKDTGIYECQVSFVRHR 61 (236)
Q Consensus 33 ~~~~~L~i~~~~~~D~G~Y~C~v~~~~~~ 61 (236)
....+|.|.+++.+|+|.|.|.+.+..+.
T Consensus 41 ~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~ 69 (76)
T cd05895 41 KKSSELQISKASLADNGEYKCMVSSKLGN 69 (76)
T ss_pred CcEEEEEECcCCcccCEEEEEEEEeCCCc
Confidence 34578999999999999999999986654
No 265
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=97.86 E-value=7.5e-05 Score=45.12 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecCCCce
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTTPHQA 116 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 116 (236)
....|.|.+++.+|+|.|+|.|.|..+..
T Consensus 41 ~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 69 (75)
T cd05750 41 KNSELQINKAKLADSGEYTCVVENILGND 69 (75)
T ss_pred ceEEEEEccCCcccCeEEEEEEEEcCCce
Confidence 35689999999999999999999988654
No 266
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.85 E-value=4.2e-05 Score=49.81 Aligned_cols=54 Identities=24% Similarity=0.426 Sum_probs=35.9
Q ss_pred CeeEeeC---CeEEEEecceEe--cCCcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEE
Q psy10361 1 VSFVRHR---DIHLLTTGRYTY--TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56 (236)
Q Consensus 1 v~w~~~~---~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~ 56 (236)
+.|+|.+ ...++....... ....||.... ....+.|.|.+++++|+|.|.|.+.
T Consensus 33 ~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~~~~~Dsg~Y~Ca~~ 91 (106)
T cd04980 33 LAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG--SGTDFTLTISRVEPEDAAVYYCQQY 91 (106)
T ss_pred EEEEEECCCCCcEEEEECccccCCCCCCCEEEec--cCCEEEEEECCCChHHCEEEEEEEe
Confidence 5799875 233332222211 1235777643 4467899999999999999999975
No 267
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.85 E-value=0.00017 Score=44.15 Aligned_cols=66 Identities=23% Similarity=0.414 Sum_probs=40.1
Q ss_pred eEEEEeEEeeCCCCCCeEEEeecCe----E-Eeee----------cCCCceEEEeecCcceEEEEEEcccCCCCCeEEEE
Q psy10361 156 TINLTCVVRFSPEPPAYIFWNHNEA----I-ISYD----------SQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC 220 (236)
Q Consensus 156 ~~~l~C~~~~~p~p~~~v~W~~~~~----~-~~~~----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C 220 (236)
++.|.|.......+...+.|++... . +... ...++....... .....+|.|.+++.+|+|.|.|
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C 79 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDT-SKNDVSLTISNLRVEDTGTYYC 79 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecC-cCCEEEEEEcCCCHHHCEEEEE
Confidence 4689998876532223789987541 1 1110 112233332221 2355789999999999999999
Q ss_pred Ee
Q psy10361 221 NP 222 (236)
Q Consensus 221 ~a 222 (236)
.+
T Consensus 80 ~v 81 (81)
T smart00406 80 AV 81 (81)
T ss_pred cC
Confidence 63
No 268
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.84 E-value=4.6e-05 Score=47.84 Aligned_cols=70 Identities=20% Similarity=0.344 Sum_probs=42.7
Q ss_pred CCeEEEEeEEe-eCCCCCCeEEEeecCeEEeeecCCCceEEEeecC-cceEEEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 154 GSTINLTCVVR-FSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKG-ETTVSYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 154 g~~~~l~C~~~-~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
|+.+.+.|.+. ++ |++.+.|+.++..+.... .........+ ....+.|.+..-...+...++|.|.+..-
T Consensus 14 ~~~~~~~C~s~~~~--P~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGY--PPPQITWYLDGGPVVASN--TTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEB--S-EEEEEEETTCEECEEE--EEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeE--CCeEEEEEECCCceeeee--eeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 67999999775 45 667999999987762100 0111111222 22345677665444556699999988763
No 269
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=97.84 E-value=7.1e-05 Score=45.84 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=27.3
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce--eEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA--HYIYLT 122 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~l~ 122 (236)
.++|.|.+++.+|+|.|.|.|.|..+.. ..+.|+
T Consensus 43 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 43 NGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred CCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence 4689999999999999999999987643 444443
No 270
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=97.83 E-value=0.00028 Score=43.97 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVV 124 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v~ 124 (236)
...|.|.+++.+|+|.|+|.|.|..+.. ....|.|+
T Consensus 49 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~ 85 (86)
T cd05862 49 SSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVH 85 (86)
T ss_pred eeEEEEecCCcccCEEEEEEEeecceEecccEEEEEe
Confidence 4689999999999999999999976543 55566654
No 271
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.83 E-value=0.0002 Score=45.31 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=42.4
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
++...|.|.+.|...+...+.|.++|..+..+..........+......+.|.+. +++...|+|.+....
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~ 84 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG 84 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence 4557999999986324568999999988643211111221112223344556554 345569999998764
No 272
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.82 E-value=0.00046 Score=43.84 Aligned_cols=46 Identities=28% Similarity=0.320 Sum_probs=33.8
Q ss_pred CcEEEEcCCCCCcEEEEEcCCCCCCCEEEEEEeecCCC--ceeEEEEEE
Q psy10361 77 QRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPH--QAHYIYLTV 123 (236)
Q Consensus 77 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v 123 (236)
+|+.+. .....+.+|.|.+++.+|+|.|+|.+.+.+. .++...|+|
T Consensus 48 ~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 48 GRVSFK-NYSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred CcEEEc-CCCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 455554 3344678999999999999999999988663 235566655
No 273
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.80 E-value=5.1e-05 Score=50.27 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=29.2
Q ss_pred CcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEE
Q psy10361 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSF 57 (236)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~ 57 (236)
..||..........++|+|.+++.+|+|.|.|.+..
T Consensus 63 ~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 63 KNKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred CCCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence 568877664333679999999999999999999853
No 274
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.80 E-value=4.9e-05 Score=48.60 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=27.9
Q ss_pred cceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEE
Q psy10361 23 QRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFV 58 (236)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~ 58 (236)
.|+.+. .....+.+|.|++++.+|+|.|.|.+...
T Consensus 49 ~r~~~~-~~~~~~~sL~I~nv~~~D~G~Y~C~~~~~ 83 (97)
T cd05846 49 RRRSIT-SLGLNSTSITIWNVTLEDEGCYKCIFNTF 83 (97)
T ss_pred CeEEEc-CCCCCccEEEEeCCceeeeEEEEEEEEeC
Confidence 455554 34557899999999999999999998653
No 275
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.79 E-value=0.00037 Score=43.99 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=42.9
Q ss_pred cCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 153 NGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 153 ~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
.|....|.|.+.+...+...+.|.++|..+. ........-..+......+.|.+ ...+...|+|.+....
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~---~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEF---TPTKGDEYACRVRHNS 83 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEE---CCCCCCeEEEEEEECC
Confidence 3566789999998643556899999998875 32222222111222233344444 3556679999988754
No 276
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.76 E-value=0.00013 Score=46.47 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=44.0
Q ss_pred EecCCeEEEEeEEeeC-CCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 151 IENGSTINLTCVVRFS-PEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 151 ~~~g~~~~l~C~~~~~-p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
+..++.+.|.|.+.+. ..+...+.|.+++......... ......+......+.|.+..-...+.-.|+|.+....
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~-~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQ-PPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEec-ccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence 4457889999999998 4356689999987433211111 1111112223344556555433334448999998875
No 277
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=97.75 E-value=0.00028 Score=42.24 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCC
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTP 113 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~ 113 (236)
..+|.|.+++.+|+|.|+|.+.+..
T Consensus 35 ~~~L~I~~v~~~D~G~YtC~a~~~~ 59 (72)
T cd07702 35 GYSLVIKDVTEEDAGIYTILLGIKQ 59 (72)
T ss_pred CCEEEECcCCHHHCEEEEEEEEccc
Confidence 3479999999999999999999863
No 278
>PHA03376 BARF1; Provisional
Probab=97.75 E-value=0.00013 Score=51.34 Aligned_cols=56 Identities=13% Similarity=0.259 Sum_probs=40.0
Q ss_pred CeeEe----eCCeEEEEecceE----ecCCcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEE
Q psy10361 1 VSFVR----HRDIHLLTTGRYT----YTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFV 58 (236)
Q Consensus 1 v~w~~----~~~~~~~~~~~~~----~~~~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~ 58 (236)
|.|++ ...+++...++.. +..-.|+.+.. +.++.+|.|.+++++|.|.|.|.+.--
T Consensus 46 IrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~--~~gnvsLvI~~l~lSDdGtY~C~fQkg 109 (221)
T PHA03376 46 VSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR--SANTFFLVVTAANISHDGNYLCRMKLG 109 (221)
T ss_pred EEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEe--cCCeEEEEEEeeeecCCceEEEEEEcC
Confidence 57998 3455555555433 33445555555 348999999999999999999999853
No 279
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.74 E-value=0.00031 Score=43.16 Aligned_cols=64 Identities=17% Similarity=0.241 Sum_probs=44.7
Q ss_pred EEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCC
Q psy10361 150 FIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANS 225 (236)
Q Consensus 150 ~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~ 225 (236)
.+..|++++|+|.....+.|.+.+.|...+....... .... .+|.+..+...|+|..+|.+...
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~-------~~~~-----ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQIL-------NQDK-----KTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccceec-------cCCc-----cEEEeceeCcccCCEEEEEEEEC
Confidence 5667999999999965444445899996553321100 0111 37999999999999999998643
No 280
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.72 E-value=7.3e-05 Score=45.93 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLT 122 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~ 122 (236)
...|.|.+++.+|+|.|+|.+.|..+.. ..+.|.
T Consensus 46 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 46 IGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred ccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 4579999999999999999999988754 444444
No 281
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=97.71 E-value=7e-05 Score=47.23 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCCCeeEEEEEEE
Q psy10361 36 WTLQLKYPQHKDTGIYECQVSF 57 (236)
Q Consensus 36 ~~L~i~~~~~~D~G~Y~C~v~~ 57 (236)
.+|.|.+++++|+|.|.|.+..
T Consensus 53 ~~L~I~~~~~~DsG~Y~C~a~~ 74 (91)
T cd05871 53 RGLLLRSLQRSDAGVYTCTAVE 74 (91)
T ss_pred CeEEEeeCChhHCEEEEEEEEc
Confidence 4799999999999999999974
No 282
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=97.70 E-value=0.0015 Score=42.63 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=29.9
Q ss_pred cEEEEEcCCC-CCCCEEEEEEeecCCCce-eEEEEEEE
Q psy10361 89 DWTLQLKYPQ-HKDTGIYECQVSTTPHQA-HYIYLTVV 124 (236)
Q Consensus 89 ~~~L~i~~~~-~~d~G~Y~C~~~~~~~~~-~~~~l~v~ 124 (236)
...|.|.+++ .+|.|.|+|.|.|..+.. ..+.|.+.
T Consensus 68 ~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~ 105 (109)
T cd05773 68 TSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVST 105 (109)
T ss_pred eeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEec
Confidence 4679999997 699999999999998764 66677766
No 283
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.69 E-value=0.00012 Score=45.29 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=42.7
Q ss_pred CCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 154 g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
++.+.|.|.+.+..-....+.|++++..+.............+......+.|.+. ..+...|+|.+....
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence 7889999999886323458999999987642111101111112223444556655 455569999987665
No 284
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.68 E-value=0.00026 Score=45.50 Aligned_cols=47 Identities=32% Similarity=0.395 Sum_probs=33.6
Q ss_pred CcEEEEcCCCCCcEEEEEcCCCCCCCEEEEEEeecCC-C-ceeEEEEEE
Q psy10361 77 QRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTP-H-QAHYIYLTV 123 (236)
Q Consensus 77 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~-~~~~~~l~v 123 (236)
+|..+.........+|.|.+++.+|+|.|.|.+.+.+ + .+..+.|+|
T Consensus 51 ~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 51 GRVRFETPNPIADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred CcEEEeCCCCCCceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 4556554434467789999999999999999998754 3 234555554
No 285
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.64 E-value=0.00013 Score=47.37 Aligned_cols=33 Identities=33% Similarity=0.579 Sum_probs=27.0
Q ss_pred CcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEE
Q psy10361 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56 (236)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~ 56 (236)
..||.... ....++|.|.+++.+|+|.|.|.+.
T Consensus 57 ~~rf~~~~--~~~~~~L~I~~~~~sDsgtY~Ca~~ 89 (104)
T cd05720 57 SKRFSGSR--SSNSFVLTLKNFQKENEGYYFCSVA 89 (104)
T ss_pred CceEEEEe--cCCEEEEEECCCCHHHCEEEEEEEc
Confidence 45777644 3478899999999999999999876
No 286
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=97.64 E-value=0.00014 Score=47.02 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=27.4
Q ss_pred CcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEEe
Q psy10361 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVR 59 (236)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~~ 59 (236)
..|..+.. |.+|.|++++..|+|.|.|++....
T Consensus 61 ~gR~~~~~-----ngSL~I~~v~~~D~G~Y~~~v~~~~ 93 (105)
T cd05774 61 SGRETIYP-----NGSLLIQNVTQKDTGFYTLQTITTN 93 (105)
T ss_pred CCcEEEeC-----CCcEEEecCCcccCEEEEEEEEeCC
Confidence 45766665 4599999999999999999998654
No 287
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.63 E-value=0.00011 Score=42.91 Aligned_cols=19 Identities=32% Similarity=0.648 Sum_probs=17.9
Q ss_pred EEEEcCCCCCCCeeEEEEE
Q psy10361 37 TLQLKYPQHKDTGIYECQV 55 (236)
Q Consensus 37 ~L~i~~~~~~D~G~Y~C~v 55 (236)
.|.|.+++.+|+|.|.|.|
T Consensus 46 ~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 46 RLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEEESSCTGGGTEEEEEEE
T ss_pred EEEEccCCHHHCEEEEEEC
Confidence 4999999999999999986
No 288
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=97.62 E-value=0.0011 Score=41.96 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=23.4
Q ss_pred cEEEEEcCCC-CCCCEEEEEEeecCCCce
Q psy10361 89 DWTLQLKYPQ-HKDTGIYECQVSTTPHQA 116 (236)
Q Consensus 89 ~~~L~i~~~~-~~d~G~Y~C~~~~~~~~~ 116 (236)
++.|.|.++. .+|+|.|+|.|.|..+..
T Consensus 56 ~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~ 84 (93)
T cd05849 56 GGNLVINNPDKYKDAGRYVCIVSNIYGKV 84 (93)
T ss_pred CCEEEECcCCcCCCCEEEEEEEEeCcceE
Confidence 3579999885 699999999999988654
No 289
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=97.61 E-value=0.00093 Score=42.61 Aligned_cols=74 Identities=14% Similarity=0.133 Sum_probs=43.3
Q ss_pred CCCCCCeeEEEEEEEEecceeEEecceeeEE--ecCCcEEEEcC--CCCCcEEEEEcCCCCCC-CEEEEEEeecCCCce
Q psy10361 43 PQHKDTGIYECQVSFVRHRDIHLLTTGRYTY--TNDQRFRVINN--PTSDDWTLQLKYPQHKD-TGIYECQVSTTPHQA 116 (236)
Q Consensus 43 ~~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~L~i~~~~~~d-~G~Y~C~~~~~~~~~ 116 (236)
+..+|.+...|.+.....+......-....+ ..++|+.+... .......|.|.++...| .|.|.|.|.|..+..
T Consensus 13 ~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d 91 (98)
T cd05898 13 AVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSG 91 (98)
T ss_pred EeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccc
Confidence 4467888889987432222111110000011 11345655432 12345689999998877 799999999998765
No 290
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=97.61 E-value=0.00032 Score=43.52 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=24.6
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA 116 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 116 (236)
...|.|.+++.+|+|.|.|.+.|..+..
T Consensus 51 ~~~L~I~~v~~~DsG~Y~C~a~n~~g~~ 78 (85)
T cd05754 51 NGILTIRNVQLSDAGTYVCTGSNMLDTD 78 (85)
T ss_pred CCEEEECCCCHHHCEEEEEEEeccCCeE
Confidence 4689999999999999999999987644
No 291
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=97.61 E-value=0.00027 Score=43.04 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=22.8
Q ss_pred cEEEEEcCCCC----CCCEEEEEEeecCCCce
Q psy10361 89 DWTLQLKYPQH----KDTGIYECQVSTTPHQA 116 (236)
Q Consensus 89 ~~~L~i~~~~~----~d~G~Y~C~~~~~~~~~ 116 (236)
.+.|.|..++. +|+|.|+|.|.|..+..
T Consensus 38 ~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05733 38 SGTLVIDNMNGGRAEDYEGEYQCYASNELGTA 69 (77)
T ss_pred CCEEEEeccCCCCCcCCCEEEEEEEEcCCCcE
Confidence 56788888754 78999999999988754
No 292
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.60 E-value=0.00044 Score=40.21 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=39.1
Q ss_pred cCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCC-CCCceEE
Q psy10361 153 NGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPAN-SQAKSVM 231 (236)
Q Consensus 153 ~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n-~~g~~~~ 231 (236)
..+.+.|+|.. . ..|.|++ |..+.... + .+|.+........|.|.|.+.+ .....++
T Consensus 5 ~~~~V~L~C~~-~-----tsi~W~k-G~~~~~~~----------~-----~tlnLGs~~~DPRG~Y~C~~s~~~~~~~LQ 62 (69)
T cd07691 5 SEGKVFLKCNG-A-----TNITWKK-GKEILEVS----------N-----TLLDLGSRINDPRGTYSCKESEPNKEKTLQ 62 (69)
T ss_pred cCceEEEEecC-C-----CcEEEec-Cccccccc----------c-----cEEeccCcccCCCcceEecCccCCCcEEEE
Confidence 34678999965 1 2699999 44332111 1 2788888888899999999988 2234444
Q ss_pred EE
Q psy10361 232 VN 233 (236)
Q Consensus 232 ~~ 233 (236)
|+
T Consensus 63 Vy 64 (69)
T cd07691 63 VY 64 (69)
T ss_pred EE
Confidence 43
No 293
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.60 E-value=0.00017 Score=47.81 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=28.6
Q ss_pred CcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEE
Q psy10361 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSF 57 (236)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~ 57 (236)
..||..........+.|.|.+++++|+|.|.|.+..
T Consensus 62 ~~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 62 KGRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred CCcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence 358877654444567899999999999999998764
No 294
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=97.59 E-value=0.00098 Score=40.97 Aligned_cols=63 Identities=10% Similarity=0.027 Sum_probs=40.8
Q ss_pred CCCCCCeeEEEEEEEEecceeEEecce-eeEEecCCcEEEEcCCCCCcEEEEEcCCCCCCCEEEEEEeecCCCce
Q psy10361 43 PQHKDTGIYECQVSFVRHRDIHLLTTG-RYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA 116 (236)
Q Consensus 43 ~~~~D~G~Y~C~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 116 (236)
+..++.....|++..... . .+.|.+++..... ........|.|..+ .|+|.|.|.|.|..+..
T Consensus 10 v~~G~~v~l~C~a~G~P~--------P~~I~W~k~g~~l~~-~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~ 73 (81)
T cd05749 10 VTANTPFNLTCQAVGPPE--------PVEILWWQGGSPLGD-PPAPSPSVLNVPGL--NETSKFSCEAHNAKGVT 73 (81)
T ss_pred EcCCCCEEEEEEeeeecC--------CeEEEEEECCEECCC-CCCCCCCEEEEccc--cCCeEEEEEEEeccCcE
Confidence 345778888898765432 2 3566666643321 11123457888887 57899999999988754
No 295
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=97.58 E-value=0.0026 Score=40.29 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=22.8
Q ss_pred cEEEEEcCCC-CCCCEEEEEEeecCCCce
Q psy10361 89 DWTLQLKYPQ-HKDTGIYECQVSTTPHQA 116 (236)
Q Consensus 89 ~~~L~i~~~~-~~d~G~Y~C~~~~~~~~~ 116 (236)
.+.|.|.++. .+|+|.|+|.|.|..+..
T Consensus 57 ~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~ 85 (94)
T cd05850 57 AGNLVINNPQKARDAGSYQCLAINRCGTV 85 (94)
T ss_pred CCeEEEccCCccCcCEEEEEEEEcCcCcE
Confidence 3468888865 699999999999988754
No 296
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.56 E-value=0.00019 Score=45.66 Aligned_cols=73 Identities=14% Similarity=0.101 Sum_probs=43.6
Q ss_pred ecCCeEEEEeEEeeCC-CCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 152 ENGSTINLTCVVRFSP-EPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 152 ~~g~~~~l~C~~~~~p-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
..+..+.|.|.+.+.. .....+.|.+++.. .. .........+..+...+.|.+..-.......|+|.+.....
T Consensus 17 ~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~--~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 17 LLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EA--VQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred CcCCccEEEEEEeccCCCCCeEEEEEECCcc-Cc--EEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 3577899999999864 23468999999865 11 11111111122234556666654333444479999988764
No 297
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.55 E-value=0.00031 Score=43.42 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecCCC--ceeEEEEE
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTTPH--QAHYIYLT 122 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~ 122 (236)
....|.|.+++.+|+|.|+|.+.+..+ .+..+.++
T Consensus 46 ~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~ 82 (83)
T cd05753 46 SNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSIT 82 (83)
T ss_pred CCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEE
Confidence 356799999999999999999988764 33444444
No 298
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.55 E-value=0.00028 Score=44.72 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCC
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTP 113 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~ 113 (236)
...|.|.++..+|+|.|+|.+.+..
T Consensus 54 ~~~L~I~~v~~~D~G~YtC~~~~~~ 78 (95)
T cd05897 54 STYLHIIDVSLNDSGYYTCKLQFTH 78 (95)
T ss_pred CCEEEEEEcChhhCEEEEEEEEEee
Confidence 3469999999999999999998865
No 299
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.55 E-value=0.00041 Score=45.58 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=29.7
Q ss_pred CcceEEeecC-CCCceEEEEcCCCCCCCeeEEEEEEEEe
Q psy10361 22 DQRFRVINNP-TSDDWTLQLKYPQHKDTGIYECQVSFVR 59 (236)
Q Consensus 22 ~~r~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~v~~~~ 59 (236)
.+|..+.... ..++.+|+|.+++.+|+|.|.|.+..-.
T Consensus 64 ~gRv~l~~~~~~~g~asL~i~~v~~sD~G~Y~C~V~~g~ 102 (117)
T cd05901 64 MGRVSVPSHPEDQGDASLTIVKLRASDAGVYRCEVMHGI 102 (117)
T ss_pred cCcEEeeccCCcCCceEEEEcccccccCEEEEEEEEECC
Confidence 4577765422 3468999999999999999999997643
No 300
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.54 E-value=0.00012 Score=46.45 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.8
Q ss_pred CceEEEEcCCCCCCCeeEEEEEEEEec
Q psy10361 34 DDWTLQLKYPQHKDTGIYECQVSFVRH 60 (236)
Q Consensus 34 ~~~~L~i~~~~~~D~G~Y~C~v~~~~~ 60 (236)
.+..|.|.+|+.+|+|.|.|.+.+...
T Consensus 58 ~~G~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 58 TNGNLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred CCCcEEEeecCHhhCceeEEEEEeccc
Confidence 356999999999999999999998653
No 301
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=97.53 E-value=0.0025 Score=40.40 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=23.2
Q ss_pred cEEEEEcCCC-CCCCEEEEEEeecCCCce
Q psy10361 89 DWTLQLKYPQ-HKDTGIYECQVSTTPHQA 116 (236)
Q Consensus 89 ~~~L~i~~~~-~~d~G~Y~C~~~~~~~~~ 116 (236)
++.|.|.++. .+|+|.|+|.|.|..+..
T Consensus 57 ~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~ 85 (94)
T cd05848 57 DGNLIISNPSEVKDSGRYQCLATNSIGSI 85 (94)
T ss_pred CCeEEEccCCccCcCEEEEEEEEcCCCeE
Confidence 3478898875 699999999999988754
No 302
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.52 E-value=0.002 Score=41.21 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=23.5
Q ss_pred EEEEEcCCCCCC-CEEEEEEeecCCCce
Q psy10361 90 WTLQLKYPQHKD-TGIYECQVSTTPHQA 116 (236)
Q Consensus 90 ~~L~i~~~~~~d-~G~Y~C~~~~~~~~~ 116 (236)
..|.|.+++.+| .|.|.|.|.|..+..
T Consensus 64 s~L~I~~v~~~d~~G~Y~C~A~N~~G~~ 91 (98)
T cd05758 64 STLTISNTQESDFQTSYNCTAWNSFGSG 91 (98)
T ss_pred EEEEECCccccccceeEEEEEEcCCCcc
Confidence 579999999955 899999999988764
No 303
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.52 E-value=0.00019 Score=41.43 Aligned_cols=53 Identities=26% Similarity=0.477 Sum_probs=35.8
Q ss_pred ecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 152 ENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 152 ~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
..|..|+|+|+.... .+.|.+++..+.. . . ..+.+.+-. ++.|.|.|.+.+..
T Consensus 5 isGTtVtlTCP~~~~-----~i~W~~n~~~~~g-~---------~------~~~~~~~~~-e~~G~Y~C~~~~~~ 57 (65)
T cd07692 5 ISGTTVTVTCPLSGD-----DIKWKKNDQVSQG-S---------D------EKYLSLNHF-SSSGYYHCTADNAN 57 (65)
T ss_pred EeccEEEEECCCCCC-----CceEEeCCccCCC-C---------C------ceEEeeccC-CCCceEEEEeCCCc
Confidence 358999999976532 4999999854421 0 0 134444444 88999999987653
No 304
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.51 E-value=0.0003 Score=45.73 Aligned_cols=60 Identities=15% Similarity=0.243 Sum_probs=43.2
Q ss_pred CeeEeeCCe--EEEEe----cceEecCCcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEEec
Q psy10361 1 VSFVRHRDI--HLLTT----GRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRH 60 (236)
Q Consensus 1 v~w~~~~~~--~~~~~----~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~~~ 60 (236)
++|+|..+. .|+.. ++.......||..........++|+|.+++.+|++.|.|...-.-.
T Consensus 33 ~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~e~myP 98 (115)
T cd05721 33 ASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDIYFCKIELMYP 98 (115)
T ss_pred EEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEEeeeccC
Confidence 479988644 22322 2212124678888887788899999999999999999998865443
No 305
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.50 E-value=0.00063 Score=46.59 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCCCeeEEEEEEE
Q psy10361 36 WTLQLKYPQHKDTGIYECQVSF 57 (236)
Q Consensus 36 ~~L~i~~~~~~D~G~Y~C~v~~ 57 (236)
.+|+|.+++.+|+|.|.|++..
T Consensus 1 asL~i~~v~~~D~G~Y~C~~~~ 22 (139)
T cd05771 1 ASLTLPGLTVHDEGTYICSVST 22 (139)
T ss_pred CeEEECCCCHHHCEEEEEEEEc
Confidence 3799999999999999998864
No 306
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=97.49 E-value=0.00098 Score=39.57 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA 116 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 116 (236)
...|.|.+++ |+|.|+|.|.|..+..
T Consensus 37 ~~~L~i~~~~--d~G~Y~C~A~N~~G~~ 62 (69)
T cd05739 37 RNVLELTNIY--ESANYTCVAISSLGMI 62 (69)
T ss_pred ccEEEEeccc--cCeeEEEEEEeCCCEE
Confidence 4478899874 8999999999988754
No 307
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=97.48 E-value=0.00084 Score=40.82 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=22.0
Q ss_pred cEEEEEcCCCC----CCCEEEEEEeecCCCce
Q psy10361 89 DWTLQLKYPQH----KDTGIYECQVSTTPHQA 116 (236)
Q Consensus 89 ~~~L~i~~~~~----~d~G~Y~C~~~~~~~~~ 116 (236)
+++|.|..+.. .|.|.|+|.|.|..+..
T Consensus 38 ~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05874 38 TGTLVINIMNGEKAEAYEGVYQCTARNERGAA 69 (77)
T ss_pred CceEEEeccccCCCCCCCEEEEEEEEcCCCeE
Confidence 45787877764 37899999999988754
No 308
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=97.47 E-value=0.0023 Score=38.89 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=22.0
Q ss_pred cEEEEEcCCCC----CCCEEEEEEeecCCCce
Q psy10361 89 DWTLQLKYPQH----KDTGIYECQVSTTPHQA 116 (236)
Q Consensus 89 ~~~L~i~~~~~----~d~G~Y~C~~~~~~~~~ 116 (236)
.++|.|..++. +|+|.|.|.|.|..+..
T Consensus 38 ~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05875 38 SGTLVIDFSGGGRPEDYEGEYQCFARNNLGTA 69 (77)
T ss_pred CceEEEeccCCCCCCCCCEEEEEEEEeccceE
Confidence 46788887642 46999999999988754
No 309
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=97.47 E-value=0.0013 Score=41.99 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=21.3
Q ss_pred cCCCCCCCEEEEEEeecCCCce--eEEEEEE
Q psy10361 95 KYPQHKDTGIYECQVSTTPHQA--HYIYLTV 123 (236)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~~~~~~--~~~~l~v 123 (236)
..++.+|+|.|+|.+.|..+.. ..+.|.|
T Consensus 69 ~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 69 GRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred cCCCcCcCEEEEEEEEccccceecceEEEEe
Confidence 3457999999999999988753 4444443
No 310
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.43 E-value=0.00084 Score=42.61 Aligned_cols=73 Identities=12% Similarity=0.174 Sum_probs=42.9
Q ss_pred cCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 153 NGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 153 ~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
.++.+.|.|.+.+..-+...+.|.++|.. .............+......+.|.+..-.......|+|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 35678999999986324568999999987 32111111111112333445566665443233558999988764
No 311
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=97.39 E-value=0.00031 Score=43.77 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=20.4
Q ss_pred EEEEcCCCCCCCeeEEEEEEEE
Q psy10361 37 TLQLKYPQHKDTGIYECQVSFV 58 (236)
Q Consensus 37 ~L~i~~~~~~D~G~Y~C~v~~~ 58 (236)
.|.|.+++.+|+|.|.|.+...
T Consensus 49 ~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 49 GLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred cEEEeCCCHHHCEEEEEEEEec
Confidence 7999999999999999998864
No 312
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=97.37 E-value=0.0027 Score=39.06 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLT 122 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~ 122 (236)
.+.|.|.+++.+|+|.|.|.+.+..+.. ..+.|.
T Consensus 50 ~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~ 84 (85)
T cd05729 50 KWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD 84 (85)
T ss_pred EEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence 4679999999999999999999887653 444443
No 313
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=97.35 E-value=0.0011 Score=41.43 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=26.4
Q ss_pred EEEEcCCCCCCCEEEEEEeecCCCce--eEEEEEEE
Q psy10361 91 TLQLKYPQHKDTGIYECQVSTTPHQA--HYIYLTVV 124 (236)
Q Consensus 91 ~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~l~v~ 124 (236)
.|.|.+++.+|+|.|.|.+.+..... ..+.|.|.
T Consensus 52 ~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~ 87 (89)
T cd04979 52 GLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVL 87 (89)
T ss_pred CEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEe
Confidence 58999999999999999998765433 45555554
No 314
>KOG3515|consensus
Probab=97.34 E-value=0.00096 Score=57.05 Aligned_cols=169 Identities=18% Similarity=0.190 Sum_probs=96.3
Q ss_pred EEEEcCCCCCCCeeEEEEEEEEecceeEEecceeeEEecCCcEEEEcCCCCCcEEEEEcCCCCCCCEEEEEEeecCCCce
Q psy10361 37 TLQLKYPQHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA 116 (236)
Q Consensus 37 ~L~i~~~~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 116 (236)
.|.- +++.++.-...|.+..-.. ...+.|.+................|.......+..+.|.|.+.|..+..
T Consensus 14 ~l~~-~~~~g~~v~l~C~v~~~pp-------~~~~eW~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~ 85 (741)
T KOG3515|consen 14 SLTV-GLRLGEDVPLPCRVNSNPP-------EIDVEWYHSTSGEHGRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMP 85 (741)
T ss_pred CCCh-hhccCCcceeeeecCCCCC-------CcceEEEecCcccccccccccCCceeeecchhhhhhhhhhhhcccccCc
Confidence 3444 5667777777887653211 1123333322211111111123467777778888899999999885433
Q ss_pred --eEEEEEEEEEEeeCCcccccCCCcccccCCCcEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecC-CCceEE
Q psy10361 117 --HYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQ-RGGVNV 193 (236)
Q Consensus 117 --~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~-~~~~~~ 193 (236)
....+.+. +.|. .+..........+..+.+.|.......|.+.+.|..++........ ...+..
T Consensus 86 ~~~~~~l~v~----------~~pa---~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~ 152 (741)
T KOG3515|consen 86 SRCPMILDVD----------YPPA---CLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGA 152 (741)
T ss_pred eecceeeccc----------cCcc---ccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccc
Confidence 44445554 1121 1111122334567889999977665557779999998876654321 111110
Q ss_pred EeecCc-ceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 194 ITEKGE-TTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 194 ~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
....+. ...+.+.+...+.++.|.|+|.|.|..
T Consensus 153 ~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~ 186 (741)
T KOG3515|consen 153 GALGSSYTEPSLLKQTVSRKADNGNYTCPANNRN 186 (741)
T ss_pred cccCceeccccceeeEEEEecCCceeEccccccc
Confidence 111111 234567888888999999999999953
No 315
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=97.31 E-value=0.0024 Score=40.51 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=23.6
Q ss_pred EEEEEcCC-----CCCCCEEEEEEeecC-CCce--eEEEEE
Q psy10361 90 WTLQLKYP-----QHKDTGIYECQVSTT-PHQA--HYIYLT 122 (236)
Q Consensus 90 ~~L~i~~~-----~~~d~G~Y~C~~~~~-~~~~--~~~~l~ 122 (236)
+.|.|.++ ..+|+|.|+|.+.|. .+.. ..+.|.
T Consensus 54 ~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~ 94 (95)
T cd05722 54 GSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLT 94 (95)
T ss_pred CeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEe
Confidence 34666665 689999999999998 7653 444443
No 316
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=97.30 E-value=0.0057 Score=38.42 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=22.9
Q ss_pred cEEEEEcCCC-CCCCEEEEEEeecCCCce
Q psy10361 89 DWTLQLKYPQ-HKDTGIYECQVSTTPHQA 116 (236)
Q Consensus 89 ~~~L~i~~~~-~~d~G~Y~C~~~~~~~~~ 116 (236)
.+.|.|.++. .+|+|.|+|.|.|..+..
T Consensus 57 ~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~ 85 (91)
T cd04967 57 GGNLVISNPSKAKDAGRYQCLASNIVGTV 85 (91)
T ss_pred CCEEEEecCCccCCCEEEEEEEEcCCCEE
Confidence 3478898887 599999999999987643
No 317
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.27 E-value=0.00088 Score=47.27 Aligned_cols=58 Identities=14% Similarity=0.268 Sum_probs=36.5
Q ss_pred CeeEeeCC-eEEEEecceEecC--CcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEEe
Q psy10361 1 VSFVRHRD-IHLLTTGRYTYTN--DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVR 59 (236)
Q Consensus 1 v~w~~~~~-~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~~ 59 (236)
|.|.+... .......+..+.. .+|+..+. ..-.+.+|+|++++.+|+|.|.|.+....
T Consensus 48 VtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS-~s~~~StItIknVt~sDeGcY~C~F~tfp 108 (189)
T PHA02987 48 ITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLS-KSFNESTILIKNVSLKDNGCYTCIFNTLL 108 (189)
T ss_pred EEEEEcCCCEEEEecCCcEEChhhcCeEEEec-cCCCcceEEEEeCChhhCeEEEEEEEecC
Confidence 57887532 2222222233322 23665433 23456899999999999999999988653
No 318
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=97.27 E-value=0.0064 Score=36.95 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=26.1
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLT 122 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~ 122 (236)
...|.|.+++.+|+|.|.|.+.+..+.. ..+.|.
T Consensus 50 ~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~ 84 (86)
T smart00410 50 NSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLT 84 (86)
T ss_pred eeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEE
Confidence 4689999999999999999999765443 334443
No 319
>smart00409 IG Immunoglobulin.
Probab=97.27 E-value=0.0064 Score=36.95 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=26.1
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLT 122 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~ 122 (236)
...|.|.+++.+|+|.|.|.+.+..+.. ..+.|.
T Consensus 50 ~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~ 84 (86)
T smart00409 50 NSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLT 84 (86)
T ss_pred eeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEE
Confidence 4689999999999999999999765443 334443
No 320
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.23 E-value=0.0037 Score=40.73 Aligned_cols=79 Identities=11% Similarity=0.137 Sum_probs=50.3
Q ss_pred CcEEEecCCeEEEEeEEeeCCCCC-CeEEEeecCe-EEe-----------eecCCCceEEEeecCcceEEEEEEcccCCC
Q psy10361 147 PEVFIENGSTINLTCVVRFSPEPP-AYIFWNHNEA-IIS-----------YDSQRGGVNVITEKGETTVSYLLIQKARPS 213 (236)
Q Consensus 147 ~~~~~~~g~~~~l~C~~~~~p~p~-~~v~W~~~~~-~~~-----------~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 213 (236)
....+..|..+.|.|.+++..... ..+.|.|.-. .++ ....+.+.. ...+......+|.|.+++.+
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~t-cs~~~s~ntv~L~l~~L~a~ 84 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFN-CDGTLGNEQVNFTLQNLRAN 84 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeE-EeEeCCCCEEEEEEcCCCHH
Confidence 345677888999999998764443 4678987431 110 001122222 22233446678999999999
Q ss_pred CCeEEEEEeCCCC
Q psy10361 214 DNGKYQCNPANSQ 226 (236)
Q Consensus 214 d~G~y~C~a~n~~ 226 (236)
|.+.|.|..+.-.
T Consensus 85 DTa~Y~Ca~e~my 97 (115)
T cd05721 85 QTDIYFCKIELMY 97 (115)
T ss_pred HCeEEEEEeeecc
Confidence 9999999765443
No 321
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=97.22 E-value=0.0017 Score=41.58 Aligned_cols=34 Identities=18% Similarity=0.366 Sum_probs=26.5
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLT 122 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~ 122 (236)
...|.|..+..+|+|.|+|.+.|..... ..+.|+
T Consensus 69 ~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~ 103 (104)
T cd05896 69 EDSIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLT 103 (104)
T ss_pred CCEEEEEeCChhhCeEEEEEECCCCcceEEEEEEE
Confidence 4579999999999999999999876443 334443
No 322
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.21 E-value=0.0034 Score=39.67 Aligned_cols=74 Identities=16% Similarity=0.155 Sum_probs=42.1
Q ss_pred EecCCeEEEEeEEeeC-CCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCe-EEEEEeCCCCC
Q psy10361 151 IENGSTINLTCVVRFS-PEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNG-KYQCNPANSQA 227 (236)
Q Consensus 151 ~~~g~~~~l~C~~~~~-p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~y~C~a~n~~g 227 (236)
+..|..+++.|.+.+. |.....+.|+++...+............... .....+++.. .++|.| .|+|.|.-.+.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~--~~~~~vtftp-treD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLE--TKSLEVTFTP-TIEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCC--CcceeEEEec-chhhCCcEEEEEEEEeec
Confidence 3679999999999754 3223579999887666432111100000001 1112344433 477777 99999876653
No 323
>PHA02633 hypothetical protein; Provisional
Probab=97.15 E-value=0.0016 Score=36.96 Aligned_cols=37 Identities=19% Similarity=0.333 Sum_probs=30.2
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecCCCc-eeEEEEEEE
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTTPHQ-AHYIYLTVV 124 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~v~ 124 (236)
....|.|-++..+|+|.|.|...+.... ..++.|+|.
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 3557999999999999999999987644 367778876
No 324
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.13 E-value=0.00057 Score=43.22 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=29.6
Q ss_pred ecCCcceEEeecCCCCceEEEEcCCCCCCCe-eEEEEEEEEec
Q psy10361 19 YTNDQRFRVINNPTSDDWTLQLKYPQHKDTG-IYECQVSFVRH 60 (236)
Q Consensus 19 ~~~~~r~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~v~~~~~ 60 (236)
...+.|+.+.. +.+|.|.+++.+|+| .|.|.+.+...
T Consensus 46 i~~~~Ri~~~~-----~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 46 ITQDERVSMGQ-----NGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred ccccccEEECC-----CceEEEEEEehhhCCCCeEEEEEcccc
Confidence 34567776655 469999999999999 89999998653
No 325
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.11 E-value=0.0028 Score=40.22 Aligned_cols=66 Identities=18% Similarity=0.209 Sum_probs=38.6
Q ss_pred CeEEEEeEEe-eCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 155 STINLTCVVR-FSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 155 ~~~~l~C~~~-~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
....+.|.+. |. |++.|.|+++..... ........++.....+.|.+......++-.|+|.+.+..
T Consensus 16 ~~~va~C~s~~gk--P~a~ItW~~~~~~~~----~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~ 82 (95)
T cd05719 16 PVTVATCVSANGK--PPATISWETTLGGEA----ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPT 82 (95)
T ss_pred ccEEEEEECCCCc--CCCEEEEEeCCCCcc----eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcc
Confidence 3567999995 44 777999998721110 001111111223445677765544445559999999987
No 326
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.08 E-value=0.0028 Score=40.19 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=39.4
Q ss_pred CeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecC-cceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 155 STINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKG-ETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 155 ~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
....+.|.+.+. .|++.|.|+++..... ........++ ....+.|.+......|+..|+|.+.+..
T Consensus 16 ~~~va~C~s~~g-kPaa~IsW~~~~~g~~-----~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~a 82 (95)
T cd07703 16 PVPVAKCVSANG-RPPARISWSSTLGGNA-----NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHET 82 (95)
T ss_pred ccEEEEEEcCCC-CCCcEEEEEcCCCCCe-----eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcc
Confidence 356899988643 3778999998732111 1111111222 2345667765544555559999999986
No 327
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.03 E-value=0.00079 Score=41.68 Aligned_cols=31 Identities=19% Similarity=0.389 Sum_probs=24.3
Q ss_pred cCCcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEE
Q psy10361 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56 (236)
Q Consensus 20 ~~~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~ 56 (236)
..+.|+..... .|.|..++++|+|.|.|...
T Consensus 37 ~~~~r~~~~~~------GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 37 NAQFSYRVGTD------GLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred CCCcceEEeCC------CCEEEECCHhhCEEEEEEEe
Confidence 34567666553 58899999999999999866
No 328
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.02 E-value=0.0044 Score=39.30 Aligned_cols=76 Identities=20% Similarity=0.309 Sum_probs=46.3
Q ss_pred CCcEEEecCCeEEE-EeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCC
Q psy10361 146 GPEVFIENGSTINL-TCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPAN 224 (236)
Q Consensus 146 ~~~~~~~~g~~~~l-~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n 224 (236)
.+...+.+|+.+.+ .|.+.+ .+|++.|.|+.+...... .......++.....+.|.+..-...|.-.++|.+..
T Consensus 8 ~~~~~~~~g~~~~vA~C~sa~-gkPaa~IsW~~~~~G~~~----~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H 82 (97)
T cd07704 8 GPSLLIDGGNGTTLAACCAAE-GRPAADVTWETNVYGTSE----SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSH 82 (97)
T ss_pred CCeeEeecCcceeEEEEEccC-CccCCEeEEeCCCCCccc----eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeC
Confidence 34566778888888 998854 347789999976322110 000111122234556677655555566699999988
Q ss_pred CC
Q psy10361 225 SQ 226 (236)
Q Consensus 225 ~~ 226 (236)
..
T Consensus 83 ~a 84 (97)
T cd07704 83 PA 84 (97)
T ss_pred cc
Confidence 85
No 329
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=96.86 E-value=0.0089 Score=33.91 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecCC
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTTP 113 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~~ 113 (236)
....|.|.+++.+|+|.|+|.+.+..
T Consensus 37 ~~~~L~i~~~~~~d~G~Y~C~~~n~~ 62 (63)
T smart00408 37 SGSTLTIKSVSLEDSGEYTCVAENSA 62 (63)
T ss_pred CCcEEEEeeCCcccCEEEEEEEecCC
Confidence 35589999999999999999998754
No 330
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=96.73 E-value=0.015 Score=36.54 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecC
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTT 112 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~ 112 (236)
....+.|.+++.+|+|.|+|...+.
T Consensus 51 ~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 51 NKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred eeEEEEccCCChhHCEEEEEEEECC
Confidence 4567999999999999999999875
No 331
>PHA03269 envelope glycoprotein C; Provisional
Probab=96.67 E-value=0.085 Score=42.93 Aligned_cols=130 Identities=20% Similarity=0.258 Sum_probs=73.3
Q ss_pred cEEEEcCCCCCcEEEEEcCCCCCCCEEEEEEeecCC----CceeEEEEEEEEEEeeCCcccccCCCcccccCCCcEEEec
Q psy10361 78 RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTP----HQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIEN 153 (236)
Q Consensus 78 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~----~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (236)
++.+-.....+...|.|.++...++|.|+=...+.. .....+.+.+. -+ +...+. ...+.+
T Consensus 277 ~yi~p~~a~p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y-----------r~-PsVsV~---p~PVL~ 341 (566)
T PHA03269 277 KYIIPDRKTTSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY-----------KR-PNITVI---GDPVLL 341 (566)
T ss_pred eEEeccCCCCCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe-----------cC-CCcccc---CCcccc
Confidence 344333344456779999999999999986654322 12244445554 11 111111 224567
Q ss_pred CCeEEEEeEEeeC-CCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCC--CeEEEEEe
Q psy10361 154 GSTINLTCVVRFS-PEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSD--NGKYQCNP 222 (236)
Q Consensus 154 g~~~~l~C~~~~~-p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d--~G~y~C~a 222 (236)
|++..-.|.+..+ |.-...+.|+.++.++.............++.....++|++......| -=..+|.+
T Consensus 342 Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV 413 (566)
T PHA03269 342 GNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNV 413 (566)
T ss_pred CCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEE
Confidence 9999999999654 322456899999988853221222222223334566677663332222 23568874
No 332
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=96.55 E-value=0.014 Score=35.17 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=39.0
Q ss_pred CCCCCeeEEEEEEEEecceeEEecceeeEEecCCcEEEEcCCCCCcEEEEEcCCCCCCCEEEEEEeecCCCce--eEEEE
Q psy10361 44 QHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA--HYIYL 121 (236)
Q Consensus 44 ~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~l 121 (236)
..+|.-...|.+... +. ..+.|..+....... ...+.+..++.+|.|.|+|.+.+..+.. ..+.|
T Consensus 12 ~~g~~~~l~C~~~~~--p~------~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v 78 (80)
T PF13895_consen 12 EEGDSVTLTCSVSGN--PP------PQVQWYKNGSPINSS-----QNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNV 78 (80)
T ss_dssp ETTSEEEEEEEEESS--SS------SEEEEEETTEEEEEE-----SSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEE
T ss_pred eCCCcEEEEEEEEcc--cc------eeeeeeeeeeeeeee-----eeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEe
Confidence 346777777876611 11 123454444333321 1127789999999999999998865433 44444
Q ss_pred E
Q psy10361 122 T 122 (236)
Q Consensus 122 ~ 122 (236)
+
T Consensus 79 ~ 79 (80)
T PF13895_consen 79 T 79 (80)
T ss_dssp E
T ss_pred e
Confidence 4
No 333
>KOG3515|consensus
Probab=96.52 E-value=0.0033 Score=53.91 Aligned_cols=68 Identities=22% Similarity=0.353 Sum_probs=50.9
Q ss_pred cEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 148 EVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 148 ~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
+..+..|++|.|.|.+.+.| |...+.|++.++.+. ++.....+. +|......+...+.|.|.+.|..+
T Consensus 16 ~~~~~~g~~v~l~C~v~~~p-p~~~~eW~h~~~~~~-----~~~~~~~~~------~~~~~~~~~~~~~~~~c~a~ns~~ 83 (741)
T KOG3515|consen 16 TVGLRLGEDVPLPCRVNSNP-PEIDVEWYHSTSGEH-----GRYATIADP------TLVTTGDVRDTVAELNCRAFNSVG 83 (741)
T ss_pred ChhhccCCcceeeeecCCCC-CCcceEEEecCcccc-----cccccccCC------ceeeecchhhhhhhhhhhhccccc
Confidence 33788999999999998886 667999999887653 122222222 577777777777899999999876
No 334
>PHA03271 envelope glycoprotein C; Provisional
Probab=96.46 E-value=0.23 Score=39.72 Aligned_cols=131 Identities=20% Similarity=0.356 Sum_probs=71.0
Q ss_pred cEEEEcCCCCCcEEEEEcCCCCCCCEEEEEEeecCCC---ceeEEEEEEEEEEeeCCcccccCCCcccccCCCcEEEecC
Q psy10361 78 RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPH---QAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENG 154 (236)
Q Consensus 78 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 154 (236)
++.+-..+...+-.|.|.++...|+|.|+-...+... ..+...+.+. +-| +...+.. ..+..|
T Consensus 195 ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~----------~RP-PsVsV~a---~PVL~G 260 (490)
T PHA03271 195 KYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVC----------QRP-ASVDVLA---PPVLSG 260 (490)
T ss_pred eeEEeeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEE----------ecC-CCccccC---CccccC
Confidence 3444333444566899999999999977555444332 2244444444 122 2112221 234579
Q ss_pred CeEEEEeEEeeC-CCCCCeEEEeecCeEEeeecCCCceE--EEeecCcceEEEEEEcccCCCCCeEEEEEe
Q psy10361 155 STINLTCVVRFS-PEPPAYIFWNHNEAIISYDSQRGGVN--VITEKGETTVSYLLIQKARPSDNGKYQCNP 222 (236)
Q Consensus 155 ~~~~l~C~~~~~-p~p~~~v~W~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a 222 (236)
++..-.|.+..+ |.-...+.|+.+|..+.......... ....++....++|.+.+...+.-=..+|.+
T Consensus 261 e~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV 331 (490)
T PHA03271 261 ENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLV 331 (490)
T ss_pred CCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEE
Confidence 999999999654 32244689999998875322111111 122233345556655443222222677874
No 335
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=96.34 E-value=0.0068 Score=36.06 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCCCCeeEEEEEEE
Q psy10361 34 DDWTLQLKYPQHKDTGIYECQVSF 57 (236)
Q Consensus 34 ~~~~L~i~~~~~~D~G~Y~C~v~~ 57 (236)
.+.+|.|.++..+|.|.|.|.+.+
T Consensus 52 ~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 52 SNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSCCGGGTEEEEEEEEE
T ss_pred eeeEEEEccCCHHhCcEEEEEEEC
Confidence 356999999999999999999874
No 336
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=96.23 E-value=0.016 Score=36.99 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=28.3
Q ss_pred EEEEEcCCCCCCCEEEEEEeecCCCc-eeEEEEEEE
Q psy10361 90 WTLQLKYPQHKDTGIYECQVSTTPHQ-AHYIYLTVV 124 (236)
Q Consensus 90 ~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~v~ 124 (236)
..|.|.+++.+|.|.|+|.|.|.... +..+.|.|+
T Consensus 65 S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~ 100 (101)
T cd05860 65 SELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVN 100 (101)
T ss_pred EEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence 57999999999999999999998754 355566554
No 337
>PHA03273 envelope glycoprotein C; Provisional
Probab=96.11 E-value=0.2 Score=40.59 Aligned_cols=120 Identities=18% Similarity=0.247 Sum_probs=68.1
Q ss_pred EEEEEcCCCCCCCEEEEEEeecCCC-ceeEEEEEEEEEEeeCCcccccCCCcccccCCCcEEEecCCeEEEEeEEeeC-C
Q psy10361 90 WTLQLKYPQHKDTGIYECQVSTTPH-QAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFS-P 167 (236)
Q Consensus 90 ~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p 167 (236)
..|.|..+...++|.|+=...+..+ ......++|.. +-+ +...+. ...+.+|++..-.|.+..+ |
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~---------yr~-Psvsv~---~~PvL~Ge~y~A~C~aa~YYP 264 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVST---------YNA-PLVDLS---VHPSLKGENYRAVCVVASYFP 264 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEE---------ecC-Cccccc---CCccccCCCceEEEEeeeecC
Confidence 5699999999999999855444322 12223444431 111 111221 2245679999999999654 3
Q ss_pred CCCCeEEEeecCeEEee-ecCCCceEEEeecCcceEEEEEEcccCCCC-CeEEEEEe
Q psy10361 168 EPPAYIFWNHNEAIISY-DSQRGGVNVITEKGETTVSYLLIQKARPSD-NGKYQCNP 222 (236)
Q Consensus 168 ~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d-~G~y~C~a 222 (236)
.-...+.|+.++.++.. ...........++.....++|++......+ -=..+|.+
T Consensus 265 p~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v 321 (486)
T PHA03273 265 HSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSI 321 (486)
T ss_pred CCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEE
Confidence 22456899999998862 111122222222333566677666543322 23778874
No 338
>PHA02633 hypothetical protein; Provisional
Probab=96.04 E-value=0.0072 Score=34.35 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCCCCeeEEEEEEE
Q psy10361 34 DDWTLQLKYPQHKDTGIYECQVSF 57 (236)
Q Consensus 34 ~~~~L~i~~~~~~D~G~Y~C~v~~ 57 (236)
....|.|-++..+|+|.|.|.+.+
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn 39 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKN 39 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcC
Confidence 345899999999999999999975
No 339
>PHA03270 envelope glycoprotein C; Provisional
Probab=96.03 E-value=0.26 Score=39.59 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=69.2
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCC---ceeEEEEEEEEEEeeCCcccccCCCcccccCCCcEEEecCCeEEEEeEEee
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPH---QAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRF 165 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 165 (236)
...|.|..+....+|.|+=...+... ....+.+... -+ +...+. ...+..|++..-.|.+..
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~y-----------r~-Psvsv~---~~PvL~Ge~Y~AtC~va~ 245 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMF-----------RR-PSLSIR---PHAVLEGEPFGATCVAAN 245 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEe-----------cC-Cccccc---CCccccCCCceEEEEeee
Confidence 44699999999999999887655432 2233444444 11 112222 123557999999999965
Q ss_pred C-CCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCC-eEEEEEe
Q psy10361 166 S-PEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDN-GKYQCNP 222 (236)
Q Consensus 166 ~-p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~-G~y~C~a 222 (236)
+ |.-...+.|+.++.++..............++....+++++........ =+.+|.+
T Consensus 246 YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v 304 (466)
T PHA03270 246 YYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEF 304 (466)
T ss_pred ecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEE
Confidence 4 3223468999999887432212222223344445666676554432222 2677874
No 340
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.02 E-value=0.0086 Score=34.59 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCCCCCeeEEEEEEEE
Q psy10361 32 TSDDWTLQLKYPQHKDTGIYECQVSFV 58 (236)
Q Consensus 32 ~~~~~~L~i~~~~~~D~G~Y~C~v~~~ 58 (236)
......|.|.+++..|.|.|.|.+...
T Consensus 39 ~~~~~~l~i~~~~~~d~g~y~C~~~~~ 65 (74)
T cd00096 39 SSGSSTLTISNVTLEDSGTYTCVASNS 65 (74)
T ss_pred ceeEEEEEECccCcccCcEEEEEEecC
Confidence 335679999999999999999998764
No 341
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=95.37 E-value=0.039 Score=33.76 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=19.6
Q ss_pred EEEEcCCCCCCCeeEEEEEEEEe
Q psy10361 37 TLQLKYPQHKDTGIYECQVSFVR 59 (236)
Q Consensus 37 ~L~i~~~~~~D~G~Y~C~v~~~~ 59 (236)
.|.|......|.|.|.|++.+..
T Consensus 47 ~L~i~~~~~~~~~~y~C~a~n~~ 69 (82)
T cd05759 47 TLPITPSDHDTGRTFTCRARNEA 69 (82)
T ss_pred EEEEeCceecCCCEEEEEEcCcc
Confidence 78888888889999999998754
No 342
>PHA03052 Hypothetical protein; Provisional
Probab=95.36 E-value=0.2 Score=29.02 Aligned_cols=39 Identities=28% Similarity=0.492 Sum_probs=30.3
Q ss_pred CcEEEecCCeEEEEeEEe-eCCCCCCeEEEeecCeEEeee
Q psy10361 147 PEVFIENGSTINLTCVVR-FSPEPPAYIFWNHNEAIISYD 185 (236)
Q Consensus 147 ~~~~~~~g~~~~l~C~~~-~~p~p~~~v~W~~~~~~~~~~ 185 (236)
..+.+..|+++++.|.+. +.+...+.+.|..++..+..+
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~ 44 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEED 44 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEecc
Confidence 456778899999999995 444556689999999887543
No 343
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=95.27 E-value=0.023 Score=36.27 Aligned_cols=42 Identities=33% Similarity=0.477 Sum_probs=30.4
Q ss_pred ceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCC----ceEEEEEcC
Q psy10361 190 GVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA----KSVMVNVLN 236 (236)
Q Consensus 190 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g----~~~~~~v~~ 236 (236)
+..+...+- .|.|+.++..|+|.|.-.+.+..| ....|.|+|
T Consensus 63 r~~F~~enl-----aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVFD 108 (108)
T PF11465_consen 63 RFNFTSENL-----ALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVFD 108 (108)
T ss_dssp HEEEETTTT-----EEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE-
T ss_pred eEeeeccCc-----eEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEeeC
Confidence 445545554 899999999999999999999988 455666665
No 344
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=94.64 E-value=0.09 Score=32.10 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.6
Q ss_pred EEEEcCCCCCCCeeEEEEEEEEec
Q psy10361 37 TLQLKYPQHKDTGIYECQVSFVRH 60 (236)
Q Consensus 37 ~L~i~~~~~~D~G~Y~C~v~~~~~ 60 (236)
+|+|......|.+.|.|++.+...
T Consensus 44 ~L~~~~~~~Ddg~~~~C~A~n~a~ 67 (80)
T cd05885 44 TIRFPVDRKDDGAILSCEASHPAL 67 (80)
T ss_pred EEEEEeeeccCCcEEEEEEEChhh
Confidence 899999999999999999998654
No 345
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=94.46 E-value=0.13 Score=32.91 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecCCCceeEEEEEEE
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVV 124 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~ 124 (236)
.+.+|.|..++++|+|.|.-++.+..+.-....++|.
T Consensus 69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVs 105 (108)
T PF11465_consen 69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVS 105 (108)
T ss_dssp TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEE
T ss_pred cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEE
Confidence 5779999999999999999999887776655555554
No 346
>PHA02982 hypothetical protein; Provisional
Probab=94.42 E-value=0.16 Score=36.63 Aligned_cols=76 Identities=12% Similarity=0.331 Sum_probs=46.8
Q ss_pred cEEEecCCeEEEEeEEeeCCCCCCeEEEeecCeEEeeecCC----------------CceEEEeecCcceEEEEEEcccC
Q psy10361 148 EVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQR----------------GGVNVITEKGETTVSYLLIQKAR 211 (236)
Q Consensus 148 ~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~L~i~~v~ 211 (236)
++....++++.|.|..... .......|+.+.......... ....+.- ....++|+|+++.
T Consensus 33 dv~a~vd~~V~L~C~~~~~-~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv---~g~~STLTIkk~~ 108 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDA-DEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSV---SGNSSTFTMKKPD 108 (251)
T ss_pred hhhccCCCcEEEEecCCCc-chhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEE---eccceeEEeccCC
Confidence 3445678999999985321 134467898743221110110 0111111 1245799999999
Q ss_pred CCCCeEEEEEeCCCCC
Q psy10361 212 PSDNGKYQCNPANSQA 227 (236)
Q Consensus 212 ~~d~G~y~C~a~n~~g 227 (236)
.+..|-|+|.+....+
T Consensus 109 i~N~GCYtc~~ks~~~ 124 (251)
T PHA02982 109 PQNLGCFTCEAKDAEG 124 (251)
T ss_pred cccCCceEEEEecCCC
Confidence 9999999999998765
No 347
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=94.19 E-value=0.11 Score=34.74 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=38.6
Q ss_pred cCCeEEEEeEEeeC---CCCCCeEEEeecCeEEeeecCCCceEEEe-------ecCcceEEEEEEcccCCCCCeEEEEEe
Q psy10361 153 NGSTINLTCVVRFS---PEPPAYIFWNHNEAIISYDSQRGGVNVIT-------EKGETTVSYLLIQKARPSDNGKYQCNP 222 (236)
Q Consensus 153 ~g~~~~l~C~~~~~---p~p~~~v~W~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~L~i~~v~~~d~G~y~C~a 222 (236)
=.+++.|.|.+... ..+...+.|.+++..+............. .+-....++|.+.....- .|.|+|.+
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV 104 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV 104 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence 35789999999652 12334699999998765432211111000 111223356887775544 89999999
Q ss_pred CCCC
Q psy10361 223 ANSQ 226 (236)
Q Consensus 223 ~n~~ 226 (236)
....
T Consensus 105 t~~~ 108 (130)
T PF08204_consen 105 TELS 108 (130)
T ss_dssp EETT
T ss_pred EecC
Confidence 7666
No 348
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=94.15 E-value=0.07 Score=33.55 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=18.7
Q ss_pred EEEEcCCCCCCCeeEEEEEEEEe
Q psy10361 37 TLQLKYPQHKDTGIYECQVSFVR 59 (236)
Q Consensus 37 ~L~i~~~~~~D~G~Y~C~v~~~~ 59 (236)
.|.|......|.+.|.|++....
T Consensus 63 ~l~v~~~~~~~~~~y~C~v~h~~ 85 (95)
T cd00098 63 QLTVSPSDWNSGDTYTCVVTHES 85 (95)
T ss_pred EEEECHHHhCCCCCEEEEEEeCC
Confidence 67787666679999999998754
No 349
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=93.25 E-value=0.12 Score=32.57 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCCCCeeEEEEEE
Q psy10361 35 DWTLQLKYPQHKDTGIYECQVS 56 (236)
Q Consensus 35 ~~~L~i~~~~~~D~G~Y~C~v~ 56 (236)
...+.|.+++.+|+|.|+|...
T Consensus 54 ~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 54 QASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred EEEEEecCCCcccCEEEEEEEE
Confidence 5578999999999999999964
No 350
>KOG1480|consensus
Probab=93.13 E-value=0.046 Score=46.88 Aligned_cols=71 Identities=30% Similarity=0.462 Sum_probs=51.7
Q ss_pred CCcEEEecCCeEEEEeEE-eeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCC
Q psy10361 146 GPEVFIENGSTINLTCVV-RFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPAN 224 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~-~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n 224 (236)
+....|..+..+.+.|.. .+. |...+.|++++..+.. ........+. .|++..+...|.|+|+|.|.|
T Consensus 136 p~~q~V~~~s~~~l~cr~pe~~--paae~~w~k~e~~~~p---d~n~~~~~d~------~li~~~arlsd~~nytc~a~n 204 (909)
T KOG1480|consen 136 PVGQEVQEETTLQLPCRPPEGD--PKAEVEWLKNEVVIDP---DANVIRASDH------NLIISQARLSDSGNYTCEATN 204 (909)
T ss_pred hhhheecccccccccccCcccc--hhhhhhccccCCCCCc---cccchhhhcC------Cccccchhhhhcccceeeeeh
Confidence 334567778888888876 344 6668999999877643 2222222233 589999999999999999999
Q ss_pred CCC
Q psy10361 225 SQA 227 (236)
Q Consensus 225 ~~g 227 (236)
..+
T Consensus 205 i~~ 207 (909)
T KOG1480|consen 205 IVA 207 (909)
T ss_pred hhc
Confidence 986
No 351
>KOG4597|consensus
Probab=93.00 E-value=0.26 Score=40.11 Aligned_cols=76 Identities=18% Similarity=0.199 Sum_probs=51.6
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeEEEeec---CeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEe
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHN---EAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNP 222 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v~W~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a 222 (236)
+....+..+++..++|-+.|. |.+.|.|.+. ...+... . ...+ ..--...+..|.|-+-+..|+|.|+|.+
T Consensus 203 pa~w~vg~wetcS~tCg~~G~--q~r~V~c~qv~anr~~vv~~--~-nq~~-e~p~vtstcql~ic~ewq~~a~w~tCs~ 276 (560)
T KOG4597|consen 203 PAEWFVGDWETCSSTCGVQGR--QYRVVTCEQVFANRENVVMR--P-NQTV-ENPVVTSTCQLVICNEWQADAGWYTCSA 276 (560)
T ss_pred cchhhcccchhhcccccccCC--cCceeeeehhhccccceeec--C-cccc-CCcceeeeeeEEEcchhhcCCCceeecc
Confidence 335567789999999999998 4459999753 2322211 0 1110 0111234457999999999999999999
Q ss_pred CCCCC
Q psy10361 223 ANSQA 227 (236)
Q Consensus 223 ~n~~g 227 (236)
.|..|
T Consensus 277 rcg~g 281 (560)
T KOG4597|consen 277 RCGAG 281 (560)
T ss_pred ccccc
Confidence 99998
No 352
>PHA02982 hypothetical protein; Provisional
Probab=92.81 E-value=2.8 Score=30.55 Aligned_cols=73 Identities=15% Similarity=0.222 Sum_probs=46.9
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecCCCce--eEEEEEEEEEEeeCCcccccCCCcccccCCCcEEEecCCeEEEEeEEee
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTTPHQA--HYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRF 165 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 165 (236)
..++|.|.++..+..|.|+|.+....... ....|.|+ ...... ...........+|.+-+
T Consensus 98 ~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~-------------~~~V~~-----~W~e~nNeT~V~CyVgS 159 (251)
T PHA02982 98 NSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQ-------------KEDILY-----VVEEHNNETIITCFVGS 159 (251)
T ss_pred cceeEEeccCCcccCCceEEEEecCCCchheeheeeeEe-------------cceEEE-----EEEecCCeEEEEEEEEe
Confidence 46789999999999999999998865433 34556664 111110 11122345678999866
Q ss_pred CCCCCCeEEEeecCe
Q psy10361 166 SPEPPAYIFWNHNEA 180 (236)
Q Consensus 166 ~p~p~~~v~W~~~~~ 180 (236)
...+.+ .|..+|-
T Consensus 160 ~~~dvp--~W~V~GV 172 (251)
T PHA02982 160 KHGDVP--RFIVAGI 172 (251)
T ss_pred ccCCCc--cEEEeeE
Confidence 544423 8987765
No 353
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=91.75 E-value=0.55 Score=27.54 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=24.2
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCceeEEEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVV 124 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~ 124 (236)
...|-+.....+-.|.|.|.+.+ ......|+|.
T Consensus 32 ~~tlnLGs~~~DPRG~Y~C~~s~---~~~~~~LQVy 64 (69)
T cd07691 32 NTLLDLGSRINDPRGTYSCKESE---PNKEKTLQVY 64 (69)
T ss_pred ccEEeccCcccCCCcceEecCcc---CCCcEEEEEE
Confidence 55788888889999999999876 2233455554
No 354
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=91.54 E-value=1.1 Score=26.72 Aligned_cols=31 Identities=19% Similarity=0.362 Sum_probs=22.5
Q ss_pred CCcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEE
Q psy10361 21 NDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFV 58 (236)
Q Consensus 21 ~~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~ 58 (236)
.+..|+... .|.|......+...|.|.|...
T Consensus 40 ~~gt~~~~s-------~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 40 SDGTYFLSS-------YLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred CCCCEEEEE-------EEEEccccCCCCCEEEEEEEEc
Confidence 445555544 7888777778889999999753
No 355
>PHA03042 CD47-like protein; Provisional
Probab=91.49 E-value=1 Score=34.05 Aligned_cols=60 Identities=22% Similarity=0.346 Sum_probs=39.1
Q ss_pred CCeEEEEeEEeeCCC---CCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 154 GSTINLTCVVRFSPE---PPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 154 g~~~~l~C~~~~~p~---p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
.+++.+.|.+..... ....+.|..++..+...... +.++|.+..- ..-.|+|+|.|.+..
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------------n~aSL~~~f~-~~l~GNYTCEv~~l~ 93 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------------NTSSLKFNFS-KNLSGNYTCEAINKF 93 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------------cceEEEEecc-ccCCCceeEEEeecc
Confidence 578999999865211 12369999999877542211 2245766543 334799999988765
No 356
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=91.00 E-value=0.66 Score=28.32 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=17.3
Q ss_pred EEEEcCCCCCCCeeEEEEEEEEe
Q psy10361 37 TLQLKYPQHKDTGIYECQVSFVR 59 (236)
Q Consensus 37 ~L~i~~~~~~D~G~Y~C~v~~~~ 59 (236)
.|.+......|.+.|.|++.+..
T Consensus 46 ~l~~~~~~~d~g~~~~C~v~h~~ 68 (82)
T cd05761 46 SLRFQVDREDDGAPIICRVDHPA 68 (82)
T ss_pred EEEEEcchhhCCCEEEEEEeChh
Confidence 67776556667789999998754
No 357
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=90.79 E-value=0.43 Score=35.90 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=32.7
Q ss_pred EEEEecceEecCCcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEEe
Q psy10361 10 HLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVR 59 (236)
Q Consensus 10 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~~ 59 (236)
.|.-.++.......++.+.. +..|.+.+.+..++|.|.|.+.-..
T Consensus 16 ~W~GP~g~~l~gn~~~nIT~-----TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 16 LWTGPNGKPLSGNSYVNITE-----TGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred EEECCCCcccCCCCeEEEcc-----CceEEeeccccccCCceEEEEEEEe
Confidence 34444455555556666666 3489999999999999999987543
No 358
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=90.18 E-value=0.59 Score=35.18 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=32.7
Q ss_pred CCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC
Q psy10361 170 PAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 170 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~ 226 (236)
.|.+.|...+..... ....+.+ .+.| .|.+.+....++|.|+|...-..
T Consensus 12 DP~y~W~GP~g~~l~--gn~~~nI-T~TG-----~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLS--GNSYVNI-TETG-----KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCceEEECCCCcccC--CCCeEEE-ccCc-----eEEeeccccccCCceEEEEEEEe
Confidence 458999876543322 1223332 3333 79999999999999999976554
No 359
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=89.45 E-value=1.6 Score=27.12 Aligned_cols=36 Identities=28% Similarity=0.427 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecCCCceeEEEEEEE
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVV 124 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~ 124 (236)
...+|.+.+++..|+|..+|.+.... +...+.++|.
T Consensus 49 ~~ktL~~~qv~~qdSG~WtC~V~~~~-k~~~~~~~V~ 84 (88)
T cd07694 49 DKKTLNLVQLGPNDSGTWDCIVSVNS-SEKTLKLDIK 84 (88)
T ss_pred CccEEEeceeCcccCCEEEEEEEECc-eEEEEEeeEE
Confidence 56789999999999999999996542 2333444443
No 360
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=88.79 E-value=1.5 Score=34.60 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=18.8
Q ss_pred eEEEEeEEeeCCCCCCeEEEeec
Q psy10361 156 TINLTCVVRFSPEPPAYIFWNHN 178 (236)
Q Consensus 156 ~~~l~C~~~~~p~p~~~v~W~~~ 178 (236)
.+.|.|.+.|...+...+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999987434568899999
No 361
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=87.97 E-value=4.7 Score=25.14 Aligned_cols=66 Identities=23% Similarity=0.415 Sum_probs=38.4
Q ss_pred cEEEecCCeEEEEeEEeeCC---CCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEE
Q psy10361 148 EVFIENGSTINLTCVVRFSP---EPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCN 221 (236)
Q Consensus 148 ~~~~~~g~~~~l~C~~~~~p---~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~ 221 (236)
...+..|++++..|.....- .....+.|..++..++ ..+..... + +.+.+++.+......-.|-|.
T Consensus 12 ~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP----~~qy~~in-~---~~SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 12 SPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIP----GSQYRVIN-D---TVSSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp SSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCEST----CGCEEEES-T---TEEEEEESS--SSEEEEEEEE
T ss_pred CCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECC----hhHcceeC-C---eEEEEEEccCCCCCceEEEEE
Confidence 34678899999999985321 1445799999887543 22333322 2 235677777666555566666
No 362
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=87.94 E-value=1.6 Score=27.51 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=16.2
Q ss_pred EEEEcCCCCCCCeeEEEEEEEE
Q psy10361 37 TLQLKYPQHKDTGIYECQVSFV 58 (236)
Q Consensus 37 ~L~i~~~~~~D~G~Y~C~v~~~ 58 (236)
.|.+..-...+...|.|+|...
T Consensus 64 ~L~v~~~~w~~~~~ytC~V~H~ 85 (94)
T cd05847 64 ELNVTQEDWKSGKTYTCKVTHQ 85 (94)
T ss_pred EEEEchHHhcCCCeEEEEEEEC
Confidence 7777655555778999999863
No 363
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=87.76 E-value=1.7 Score=26.65 Aligned_cols=23 Identities=13% Similarity=0.346 Sum_probs=18.0
Q ss_pred EEEEcCCCCCCCeeEEEEEEEEe
Q psy10361 37 TLQLKYPQHKDTGIYECQVSFVR 59 (236)
Q Consensus 37 ~L~i~~~~~~D~G~Y~C~v~~~~ 59 (236)
.|.+......|...|.|++....
T Consensus 47 ~l~~~~~~~d~g~~~tC~v~h~~ 69 (83)
T cd07705 47 SVEFQVTREDDGAEITCSVGHES 69 (83)
T ss_pred EEEEEecchhCCCEEEEEEECcc
Confidence 67776666778899999998654
No 364
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=87.61 E-value=0.15 Score=34.18 Aligned_cols=57 Identities=14% Similarity=0.221 Sum_probs=29.8
Q ss_pred CeeEeeCCeEEEEecceE---ecCCcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEEe
Q psy10361 1 VSFVRHRDIHLLTTGRYT---YTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVR 59 (236)
Q Consensus 1 v~w~~~~~~~~~~~~~~~---~~~~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~~ 59 (236)
|.|.++....+...+... .....+..+ ..-..++.+|.+...+.- .|.|.|.+....
T Consensus 49 VkWk~~~~~If~~dg~~~~~~~~~f~sa~i-~~l~kG~aSL~~~~~~a~-~GnYTCeVt~~~ 108 (130)
T PF08204_consen 49 VKWKFKNKDIFIFDGTNNKSTSDNFPSAKI-SELLKGNASLKMDKSDAV-EGNYTCEVTELS 108 (130)
T ss_dssp EEEEETTEEEEEEETTTTEEEEGGGTT-BE-GGGGGTB--EEEEHHHHH--EEEEEEEEETT
T ss_pred EEEEECCeEEEEEcCccceecccCccccch-hHhhCCCEEEEEcchhcc-ccceEEEEEecC
Confidence 467776544333333311 112223333 323457889999886665 899999997543
No 365
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=87.61 E-value=1.9 Score=26.46 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=18.2
Q ss_pred EEEEcCCCCCCCeeEEEEEEEEe
Q psy10361 37 TLQLKYPQHKDTGIYECQVSFVR 59 (236)
Q Consensus 37 ~L~i~~~~~~D~G~Y~C~v~~~~ 59 (236)
+|.+......|...|.|++....
T Consensus 47 ~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 47 TLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEcccccCCCEEEEEEechh
Confidence 78887666778899999998643
No 366
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=85.24 E-value=6.4 Score=31.76 Aligned_cols=79 Identities=20% Similarity=0.319 Sum_probs=49.0
Q ss_pred cEEEecCCeEEEEeEEeeCC-CCCCeEEEeecCeEEe-------------ee-cCCCceEEEeec---CcceEEEEEEcc
Q psy10361 148 EVFIENGSTINLTCVVRFSP-EPPAYIFWNHNEAIIS-------------YD-SQRGGVNVITEK---GETTVSYLLIQK 209 (236)
Q Consensus 148 ~~~~~~g~~~~l~C~~~~~p-~p~~~v~W~~~~~~~~-------------~~-~~~~~~~~~~~~---~~~~~~~L~i~~ 209 (236)
...+..|..+.+.|..+--. .......|+-.+.++. .+ .+.......... .....++|+|..
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 34566799999999886411 2345788987654331 00 001111111110 123457999999
Q ss_pred cCCCCCeEEEEEeCCCC
Q psy10361 210 ARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 210 v~~~d~G~y~C~a~n~~ 226 (236)
++.+.+|-|.|.|....
T Consensus 353 a~I~N~GCY~~~a~~g~ 369 (500)
T PHA02914 353 AHINNAGCYEAQAFMGK 369 (500)
T ss_pred EEEEcCCceEEEEecCc
Confidence 99999999999998875
No 367
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=85.05 E-value=2.4 Score=27.01 Aligned_cols=31 Identities=19% Similarity=0.467 Sum_probs=20.7
Q ss_pred CCcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEE
Q psy10361 21 NDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFV 58 (236)
Q Consensus 21 ~~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~ 58 (236)
.+..|+... .|.+......+...|.|+|...
T Consensus 58 ~dgty~~~s-------~L~v~~~~w~~~~~~sC~V~H~ 88 (100)
T cd07699 58 SDNTYSLSS-------YLTLTKSDWNKHKVYTCEVTHE 88 (100)
T ss_pred CCCCEEEEE-------EEEEcHHHhCCCCeEEEEEEec
Confidence 355555544 6777655555678999999864
No 368
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=84.30 E-value=5.4 Score=24.90 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=14.5
Q ss_pred EEEEcCCCCCCCeeEEEEEEEEe
Q psy10361 37 TLQLKYPQHKDTGIYECQVSFVR 59 (236)
Q Consensus 37 ~L~i~~~~~~D~G~Y~C~v~~~~ 59 (236)
.|.|.. .|.+.|.|++....
T Consensus 64 ~l~v~~---~~~~~ytC~V~H~~ 83 (93)
T cd07698 64 TLEVPP---EDKARYSCRVEHSG 83 (93)
T ss_pred EEEECC---CCCCEEEEEEEeCC
Confidence 566643 48899999997643
No 369
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=84.22 E-value=5 Score=25.27 Aligned_cols=29 Identities=17% Similarity=0.417 Sum_probs=19.3
Q ss_pred cCCcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEE
Q psy10361 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFV 58 (236)
Q Consensus 20 ~~~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~ 58 (236)
..|..|+... .|.+. +++...|.|+|...
T Consensus 54 ~~d~tyq~~s-------~l~~~---~~~~~~ysC~V~H~ 82 (93)
T cd05770 54 SKDWTFYLLK-------STEFT---PTKGDEYACRVRHN 82 (93)
T ss_pred CCCCCEEEEE-------EEEEC---CCCCCeEEEEEEEC
Confidence 3455555544 66664 56888899999863
No 370
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=83.58 E-value=3.4 Score=26.16 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=14.7
Q ss_pred EEEEcCCCCCCCeeEEEEEEEE
Q psy10361 37 TLQLKYPQHKDTGIYECQVSFV 58 (236)
Q Consensus 37 ~L~i~~~~~~D~G~Y~C~v~~~ 58 (236)
.|.+..-...+.-.|.|.|...
T Consensus 64 ~l~v~~~~w~~g~~ysC~V~H~ 85 (96)
T cd07696 64 TLNVSTDDWISGDTFQCKVTHP 85 (96)
T ss_pred EEEeCHHHccCCCcEEEEEECC
Confidence 6666544434566899999864
No 371
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=82.34 E-value=4.6 Score=23.36 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=30.3
Q ss_pred EEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCceE
Q psy10361 158 NLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAKSV 230 (236)
Q Consensus 158 ~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~ 230 (236)
+|+|..... .-++|+-++..+.-... .++++..+ .++|+|+-.+....++
T Consensus 2 tltC~s~~s----LPiswYcN~TRLlRlt~---------------~Tlt~~~l----tcNFtCV~qSGh~hSi 51 (71)
T PF11049_consen 2 TLTCPSNAS----LPISWYCNGTRLLRLTQ---------------QTLTVVTL----TCNFTCVGQSGHRHSI 51 (71)
T ss_pred ceecCCCCC----CcccEEECCceeeeecC---------------CeEeeeee----eEEeeecCCCCCCceE
Confidence 478877543 25899999877642111 14555433 6789998766554433
No 372
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=81.00 E-value=29 Score=28.31 Aligned_cols=120 Identities=18% Similarity=0.228 Sum_probs=65.6
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecCCC-ceeEEEEEEEEEEeeCCcccccCCCcccccCCCcEEEecCC-eEEEEeEEee
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTTPH-QAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGS-TINLTCVVRF 165 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~l~C~~~~ 165 (236)
...+|.|..+..+.+|.|.|.|....- ......|.|. ... .. .+..+|. .....|.+-.
T Consensus 344 k~STLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~-------------d~V-~f-----~W~~e~~n~T~V~Cyv~s 404 (500)
T PHA02914 344 KNSTLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKVA-------------DHV-FF-----KWNTEGDNETKVACYAAQ 404 (500)
T ss_pred hhceEEeeeEEEEcCCceEEEEecCcchhhhhhheEec-------------cEE-EE-----EEEeccCceEEEEEEEEe
Confidence 456899999999999999999977632 2233344443 110 00 1232333 4568898865
Q ss_pred CCCCCCeEEEeecCeEEeeecC--CCceEEEeecCcceEEEEEEcccCCCC-CeEEEEEeCCCCC
Q psy10361 166 SPEPPAYIFWNHNEAIISYDSQ--RGGVNVITEKGETTVSYLLIQKARPSD-NGKYQCNPANSQA 227 (236)
Q Consensus 166 ~p~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~v~~~d-~G~y~C~a~n~~g 227 (236)
....++.+.|..+|........ .........++. ..+.+.|.+-...| --.-.|...-..|
T Consensus 405 y~~kp~si~wkvnGV~~~G~~~~~l~~~~~~~~~Gc-~~seI~I~~s~d~dtV~k~~Cr~~tg~~ 468 (500)
T PHA02914 405 YDMQPFSILWKSNGVSFGGEIADALDEHEGAICDGC-EASEIIIMDKRDKDTVKKLSCINITGQG 468 (500)
T ss_pred cccCCceeEEEEccEEecCeecCccccccccccccc-ceEEEEEecccCccccccceEEEecCCC
Confidence 5223458999988754421110 000000111111 22456666655455 4577787766554
No 373
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=80.72 E-value=8.9 Score=24.15 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=19.4
Q ss_pred ecCCcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEE
Q psy10361 19 YTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFV 58 (236)
Q Consensus 19 ~~~~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~ 58 (236)
...|..|+... .|.+.. .+...|.|+|...
T Consensus 54 ~~~Dgty~~~s-------~L~v~~---~~~~~ytC~V~H~ 83 (94)
T cd05767 54 PRQDLSFQKFS-------YLNFTP---EEGDIYSCIVEHW 83 (94)
T ss_pred eCCCCcEEEEE-------EEEEEC---CCCCeEEEEEEeC
Confidence 34455566544 676653 4667999999864
No 374
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=80.44 E-value=11 Score=23.13 Aligned_cols=36 Identities=25% Similarity=0.201 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCC--ceeEEEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPH--QAHYIYLTVV 124 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~ 124 (236)
...|.|..-...|...|+|.|.+... ......|.|+
T Consensus 43 ~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 43 TSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 35677766666666799999988542 3355566665
No 375
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=79.76 E-value=11 Score=23.02 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=18.3
Q ss_pred EEEEcccCCCCCeEEEEEe-CCCC
Q psy10361 204 YLLIQKARPSDNGKYQCNP-ANSQ 226 (236)
Q Consensus 204 ~L~i~~v~~~d~G~y~C~a-~n~~ 226 (236)
.+.+.....+|.|.+.|.| .+..
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~~ 67 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNEP 67 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECTT
T ss_pred EEEEecCCCCCCEEEEEEEcCCce
Confidence 4666778889999999999 5554
No 376
>PHA03189 UL14 tegument protein; Provisional
Probab=79.20 E-value=23 Score=27.56 Aligned_cols=79 Identities=15% Similarity=0.264 Sum_probs=40.9
Q ss_pred CCcEEEecCCeEEEEeEEeeCCCCCCeE-----EEeecCeEEeeecCC--------------CceEEEeecCcceEEEEE
Q psy10361 146 GPEVFIENGSTINLTCVVRFSPEPPAYI-----FWNHNEAIISYDSQR--------------GGVNVITEKGETTVSYLL 206 (236)
Q Consensus 146 ~~~~~~~~g~~~~l~C~~~~~p~p~~~v-----~W~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~L~ 206 (236)
+..+.+..|+.+++.|.......|-..| .|.-.+..+..+... .+.++.+. +-.+..+|+
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedl-g~aq~ltLt 137 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDL-GAAQRLTLT 137 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecc-cceeEEEEE
Confidence 4456677899999999884432232222 232222222211111 11121111 111223444
Q ss_pred EcccCCCCCeEEEEEeCCCC
Q psy10361 207 IQKARPSDNGKYQCNPANSQ 226 (236)
Q Consensus 207 i~~v~~~d~G~y~C~a~n~~ 226 (236)
+ ++..+.+|.|.|+..|..
T Consensus 138 F-~v~t~taG~Y~CvLrN~t 156 (348)
T PHA03189 138 F-RVSTSTAGMYECVLRNET 156 (348)
T ss_pred E-EEEecccceEEEEecccc
Confidence 3 466778999999999987
No 377
>PHA03112 IL-18 binding protein; Provisional
Probab=76.13 E-value=22 Score=24.34 Aligned_cols=76 Identities=11% Similarity=0.116 Sum_probs=42.1
Q ss_pred ecCCeEEEEeEEeeCCCCCCeEEEeecCe-EEeeec----CCCceEE---EeecCcceEEEEEEcccCCC-CCeEEEEEe
Q psy10361 152 ENGSTINLTCVVRFSPEPPAYIFWNHNEA-IISYDS----QRGGVNV---ITEKGETTVSYLLIQKARPS-DNGKYQCNP 222 (236)
Q Consensus 152 ~~g~~~~l~C~~~~~p~p~~~v~W~~~~~-~~~~~~----~~~~~~~---~~~~~~~~~~~L~i~~v~~~-d~G~y~C~a 222 (236)
.+++++.|+|.+.+.-.....+.|..++. ...... -.++... ...-.......|.+.++..+ ..-.++|+.
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL 115 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVL 115 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEE
Confidence 35889999999975521235789997752 221000 0000000 00011134457888888755 334999998
Q ss_pred CCCCC
Q psy10361 223 ANSQA 227 (236)
Q Consensus 223 ~n~~g 227 (236)
....|
T Consensus 116 ~D~~~ 120 (141)
T PHA03112 116 MDLDG 120 (141)
T ss_pred ecCCc
Confidence 77655
No 378
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=70.65 E-value=14 Score=24.18 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=13.7
Q ss_pred EEEEcCCCCCCCe-eEEEEEEEEe
Q psy10361 37 TLQLKYPQHKDTG-IYECQVSFVR 59 (236)
Q Consensus 37 ~L~i~~~~~~D~G-~Y~C~v~~~~ 59 (236)
.|.+.. ...|.| .|.|+|....
T Consensus 70 ~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 70 TVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred EEEEEC-ccccccCceEEEEEeCC
Confidence 566653 334444 5999998643
No 379
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=67.31 E-value=11 Score=26.52 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCCCCeeEEEEEEE
Q psy10361 34 DDWTLQLKYPQHKDTGIYECQVSF 57 (236)
Q Consensus 34 ~~~~L~i~~~~~~D~G~Y~C~v~~ 57 (236)
...-|+|++.+++|+|.|.-.+.-
T Consensus 122 ~~~lL~i~~p~~~dsG~Y~lRV~l 145 (161)
T PF01688_consen 122 NGVLLRIRNPRPEDSGIYYLRVWL 145 (161)
T ss_pred cceEEEeCCCCcccceEEEEEEEE
Confidence 467899999999999999988764
No 380
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=67.03 E-value=30 Score=21.96 Aligned_cols=70 Identities=21% Similarity=0.359 Sum_probs=39.7
Q ss_pred eEEEEeEE-eeCCCCCCeEEEeec--CeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCC---Cce
Q psy10361 156 TINLTCVV-RFSPEPPAYIFWNHN--EAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ---AKS 229 (236)
Q Consensus 156 ~~~l~C~~-~~~p~p~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~---g~~ 229 (236)
.+.-.|.+ .|. |++.|.|.-+ |.. ...... ..+......+.+.+......|.-..+|.+.... ..+
T Consensus 22 v~VA~CiSa~Gr--Ppa~ItW~t~l~G~~-etq~~~-----~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~ 93 (98)
T cd05890 22 MLVATCVSANGK--PPSVVRWDTRLKGEA-EFQEIR-----NQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDS 93 (98)
T ss_pred EEEEEEEcCCCc--CCcEeEEEccCCCce-eeeeeC-----CCCCCEEEEEEEEEeECHHHcCCEeEEEEEecccccccc
Confidence 45678985 455 7789999842 221 110000 111122344566666767777779999988753 345
Q ss_pred EEEE
Q psy10361 230 VMVN 233 (236)
Q Consensus 230 ~~~~ 233 (236)
+.|.
T Consensus 94 ~~L~ 97 (98)
T cd05890 94 VTLN 97 (98)
T ss_pred EEec
Confidence 5544
No 381
>PHA03269 envelope glycoprotein C; Provisional
Probab=65.33 E-value=84 Score=26.54 Aligned_cols=32 Identities=16% Similarity=0.378 Sum_probs=26.1
Q ss_pred CcceEEeecCCCCceEEEEcCCCCCCCeeEEE
Q psy10361 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYEC 53 (236)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 53 (236)
.++|.+-.....++..|.|+++...++|.|.=
T Consensus 275 ~~~yi~p~~a~p~~~pL~I~sltaATeGvY~W 306 (566)
T PHA03269 275 KEKYIIPDRKTTSDFSLHILSLDASTEGTYIW 306 (566)
T ss_pred CceEEeccCCCCCccceEEeecccccCceEEE
Confidence 45666666667788999999999999999963
No 382
>PHA03042 CD47-like protein; Provisional
Probab=64.30 E-value=41 Score=25.88 Aligned_cols=62 Identities=15% Similarity=0.337 Sum_probs=32.3
Q ss_pred CCCeeEEEEEEEEecceeEEecceeeEEecCCcEEEEcCCCCCcEEEEEcCCCCCCCEEEEEEeecC
Q psy10361 46 KDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTT 112 (236)
Q Consensus 46 ~D~G~Y~C~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 112 (236)
.|+-.-.|.+.+....+. ..-.+.|..+++.....+.. ...+|.+.... .=.|+|+|++.+-
T Consensus 31 N~TV~IpC~v~n~~~~ni---~~~~V~Wkf~~~~If~~n~t-n~aSL~~~f~~-~l~GNYTCEv~~l 92 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNI---SNIHINWKFNNKVIFKKNNT-NTSSLKFNFSK-NLSGNYTCEAINK 92 (286)
T ss_pred CceEEEEeecCChhhcCc---cceEEEEEeCCeeEEEecCC-cceEEEEeccc-cCCCceeEEEeec
Confidence 445555565555432210 01124566666555444333 34456555433 3389999999764
No 383
>PHA03240 envelope glycoprotein M; Provisional
Probab=60.29 E-value=35 Score=25.11 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=18.3
Q ss_pred EEEEEcccCCCCCeEEEEEeCCCCC
Q psy10361 203 SYLLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 203 ~~L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
++|.|.++..+|.|+|.=.-....|
T Consensus 105 stL~i~~vn~sd~~nYcr~k~~~~g 129 (258)
T PHA03240 105 STLIIAHLNLSDAGEYCRKKCPPKG 129 (258)
T ss_pred ceEEEEEEeecCcchhhhccCCCCC
Confidence 5899999999999999533333333
No 384
>PHA03282 envelope glycoprotein E; Provisional
Probab=59.27 E-value=12 Score=31.05 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCCCCeeEEEEEE
Q psy10361 34 DDWTLQLKYPQHKDTGIYECQVS 56 (236)
Q Consensus 34 ~~~~L~i~~~~~~D~G~Y~C~v~ 56 (236)
+++.|++.|+...++|.|.|.+.
T Consensus 331 n~VdL~F~nAp~saSGLYVfVl~ 353 (540)
T PHA03282 331 HTVNLQLRDASEASGGLYVCVVY 353 (540)
T ss_pred CccceEecCCCcccCceEEEEEE
Confidence 56799999999999999999876
No 385
>PHA03282 envelope glycoprotein E; Provisional
Probab=56.94 E-value=15 Score=30.42 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=23.7
Q ss_pred CcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEE
Q psy10361 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSF 57 (236)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~ 57 (236)
++|..+. |.+|.|.+++.+|+|.|.-.+..
T Consensus 116 ~~rvs~~------n~tl~l~~a~~~DsG~Y~L~~~~ 145 (540)
T PHA03282 116 PPRVAVV------NGTLVLREARETDSGMYVLSVSR 145 (540)
T ss_pred CcceeEe------cceEEEeeccccCCceEEEEecC
Confidence 4455554 45899999999999999998754
No 386
>PF06214 SLAM: Signaling lymphocytic activation molecule (SLAM) protein; InterPro: IPR010407 This entry is found in several mammalian signalling lymphocytic activation molecule (SLAM) proteins. Optimal T cell activation and expansion require engagement of the TCR plus co-stimulatory signals delivered through accessory molecules. SLAM, a 70 kDa co-stimulatory molecule belonging to the Ig superfamily, is defined as a human cell surface molecule that mediates CD28-independent proliferation of human T cells and IFN-gamma production by human Th1 and Th2 clones []. SLAM has also been recognised as a receptor for Measles virus [].; GO: 0004872 receptor activity, 0046649 lymphocyte activation, 0009986 cell surface, 0016021 integral to membrane; PDB: 3ALX_D 3ALZ_B 3ALW_A.
Probab=55.19 E-value=26 Score=22.80 Aligned_cols=30 Identities=13% Similarity=0.364 Sum_probs=20.7
Q ss_pred CcceEEeecCCCCceEEEEcCCCCCCCeeEEEEE
Q psy10361 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQV 55 (236)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v 55 (236)
..+|.+.. .|.+|.|-.-+.+|+|-|.-.+
T Consensus 93 edgY~Fhl----EnLsL~Il~SrkE~EGWYfmtl 122 (126)
T PF06214_consen 93 EDGYKFHL----ENLSLEILESRKEDEGWYFMTL 122 (126)
T ss_dssp SSSEEEET----TTTEEEETT--GGG-EEEEEEE
T ss_pred ccccEEec----ccceeehhccccccCceEEEEe
Confidence 34555554 6889999999999999998654
No 387
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=54.22 E-value=47 Score=20.11 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=16.3
Q ss_pred EEEEcCCCCCCCeeEEEEEEEE
Q psy10361 37 TLQLKYPQHKDTGIYECQVSFV 58 (236)
Q Consensus 37 ~L~i~~~~~~D~G~Y~C~v~~~ 58 (236)
.|.+..-...+...+.|.+...
T Consensus 62 ~l~~~~~~~~~~~~~~C~~~~~ 83 (89)
T PF08205_consen 62 TLTLTPTREDHGKTLTCRASHP 83 (89)
T ss_dssp EEEEETTGGGTTEEEEEEEEET
T ss_pred EEEEEcChHHCCeEEEEEEECC
Confidence 6777655556788999998763
No 388
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=54.13 E-value=56 Score=20.91 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=16.3
Q ss_pred cEEEEEcCCCCCCCE-EEEEEeecCCC
Q psy10361 89 DWTLQLKYPQHKDTG-IYECQVSTTPH 114 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G-~Y~C~~~~~~~ 114 (236)
..+|.+. +..+|.| .|+|.|.+...
T Consensus 61 ~stlt~~-~~r~D~g~~~sC~A~l~l~ 86 (100)
T cd05755 61 PATITIT-VDREDHGANFSCETELDLR 86 (100)
T ss_pred EEEEEEe-cchhhCCcEEEEEEEeccC
Confidence 3456665 4455555 99999987653
No 389
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=52.39 E-value=56 Score=20.43 Aligned_cols=18 Identities=11% Similarity=0.091 Sum_probs=12.1
Q ss_pred CCCCeeEEEEEEEEecce
Q psy10361 45 HKDTGIYECQVSFVRHRD 62 (236)
Q Consensus 45 ~~D~G~Y~C~v~~~~~~~ 62 (236)
.+......|.+......+
T Consensus 13 ~~~~~~L~C~~~gFyP~~ 30 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPE 30 (94)
T ss_pred CCCCeEEEEEEeeecCCC
Confidence 456678889887655443
No 390
>KOG1480|consensus
Probab=47.91 E-value=11 Score=33.36 Aligned_cols=28 Identities=21% Similarity=0.458 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA 116 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 116 (236)
...|.|..++..|.|+|+|.+.+.....
T Consensus 182 d~~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 182 DHNLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred cCCccccchhhhhcccceeeeehhhccc
Confidence 3468899999999999999999876443
No 391
>PHA03290 envelope glycoprotein I; Provisional
Probab=45.16 E-value=34 Score=27.04 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCCCeeEEEEEEEE
Q psy10361 33 SDDWTLQLKYPQHKDTGIYECQVSFV 58 (236)
Q Consensus 33 ~~~~~L~i~~~~~~D~G~Y~C~v~~~ 58 (236)
....-|+|.+.+++|+|.|.-.+.--
T Consensus 126 e~~vLL~I~~P~~~DSGiY~LRV~Ld 151 (357)
T PHA03290 126 DAEIIFKINKPGIEDAGIYLLLVQLD 151 (357)
T ss_pred CcceEEEeCCCCcccCeeEEEEEEeC
Confidence 35788999999999999999887643
No 392
>KOG0613|consensus
Probab=42.48 E-value=78 Score=30.03 Aligned_cols=135 Identities=12% Similarity=0.033 Sum_probs=75.6
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEEEEEEeeCCccc--c-cCCCcccccC---CCcEEEecCCeEEEEe
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVVVLVINDGKYL--L-VPEPETDIIG---GPEVFIENGSTINLTC 161 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v~~~~~~~~~~~--~-~~~~~~~~~~---~~~~~~~~g~~~~l~C 161 (236)
.....|.+-...+.+.|+|......+.- ..+.-.+....-...+.. . .+.+...+.. ...+....+..+++.|
T Consensus 277 ~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~ 356 (1205)
T KOG0613|consen 277 GNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPT 356 (1205)
T ss_pred CccccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecc
Confidence 4467777888888999999887765432 222222210000000100 0 0111111111 1234456677899999
Q ss_pred EEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCc
Q psy10361 162 VVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAK 228 (236)
Q Consensus 162 ~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~ 228 (236)
...+.+.| ..+.|+++....... .. .. ....+......+.+..+...+.+.|.|.|.|..|.
T Consensus 357 ~~~~~~~p-~~~~~~~~~~~~~~~-~~--~~-~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~ 418 (1205)
T KOG0613|consen 357 ALSGTQKP-DEAQGYHGEEVSSES-LG--AL-PCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGT 418 (1205)
T ss_pred cccCCcCC-chheeeccccccccc-cc--cc-ccccccccCcchhhhhcCcccccccccceeccCCc
Confidence 99888543 459999886544321 10 00 01111223346788899999999999999999884
No 393
>PHA03289 envelope glycoprotein I; Provisional
Probab=42.31 E-value=44 Score=26.33 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCCCCeeEEEEEEEE
Q psy10361 34 DDWTLQLKYPQHKDTGIYECQVSFV 58 (236)
Q Consensus 34 ~~~~L~i~~~~~~D~G~Y~C~v~~~ 58 (236)
.+.-|.|.+.++.|+|.|.-.|.--
T Consensus 120 ~gvLL~I~~Pr~~DSGiYyLRV~Ld 144 (352)
T PHA03289 120 KGLLLTIIEPRMSDTGIYYIRVSLA 144 (352)
T ss_pred CceEEEeCCCCcccCeeEEEEEEeC
Confidence 4678999999999999999888743
No 394
>KOG0200|consensus
Probab=42.17 E-value=2.3e+02 Score=25.00 Aligned_cols=24 Identities=33% Similarity=0.677 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeec
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVST 111 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~ 111 (236)
..+.+.+..+...|.|.|+|.+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~y~~~~~~ 34 (609)
T KOG0200|consen 11 NHWFLIIDSVVPGDKGFYTCLVSN 34 (609)
T ss_pred ccceEEEEEEEecCCccEEEEEec
Confidence 356788899999999999999998
No 395
>PHA03291 envelope glycoprotein I; Provisional
Probab=41.99 E-value=68 Score=25.72 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCCCCeeEEEEEEEEe
Q psy10361 34 DDWTLQLKYPQHKDTGIYECQVSFVR 59 (236)
Q Consensus 34 ~~~~L~i~~~~~~D~G~Y~C~v~~~~ 59 (236)
.+..|+|.+....|+|.|.-.|.-..
T Consensus 127 ~~vLL~i~~P~~~DsGiYvLRV~vdg 152 (401)
T PHA03291 127 RQPLLRARGAARAVVGLYVLRVWVEG 152 (401)
T ss_pred cceEEEecCCCcccceeEEEEEEeCC
Confidence 56789999999999999998876543
No 396
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=41.60 E-value=84 Score=22.18 Aligned_cols=36 Identities=28% Similarity=0.453 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecCC-CceeEEEEEE
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTTP-HQAHYIYLTV 123 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v 123 (236)
..-.|.|.+.+.+|+|.|.-.+.-.. .....+.+.+
T Consensus 122 ~~~lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~v 158 (161)
T PF01688_consen 122 NGVLLRIRNPRPEDSGIYYLRVWLDGANKADVFRLSV 158 (161)
T ss_pred cceEEEeCCCCcccceEEEEEEEECCCCCCcEEEEee
Confidence 34569999999999999998876543 2333344433
No 397
>PHA03286 envelope glycoprotein E; Provisional
Probab=38.53 E-value=35 Score=28.28 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=22.8
Q ss_pred ceEEeecCCCCceEEEEcCCCCCCCeeEEEEEE
Q psy10361 24 RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56 (236)
Q Consensus 24 r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~ 56 (236)
++...... .-+|++.|++..|+|.|.|.+.
T Consensus 298 ~la~l~~~---i~nL~f~nA~~s~SGLYVfVl~ 327 (492)
T PHA03286 298 RLAFLESD---IPSFRLANAQPTDAGLYVVVAL 327 (492)
T ss_pred cceeeccC---CCceeecCCCcccCceEEEEEE
Confidence 55555532 2259999999999999999876
No 398
>PHA03292 envelope glycoprotein I; Provisional
Probab=38.48 E-value=48 Score=26.77 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCCCCeeEEEEEEEE
Q psy10361 34 DDWTLQLKYPQHKDTGIYECQVSFV 58 (236)
Q Consensus 34 ~~~~L~i~~~~~~D~G~Y~C~v~~~ 58 (236)
.+.-|.|.+.++.|+|.|.-.|.--
T Consensus 126 ~~vLL~I~~P~~~DSGiY~LRV~Ld 150 (413)
T PHA03292 126 TNVLLNITGPQPADSGAYILRVKLD 150 (413)
T ss_pred cceEEEeCCCCcccceeEEEEEEeC
Confidence 4688999999999999999887643
No 399
>PHA03283 envelope glycoprotein E; Provisional
Probab=38.36 E-value=40 Score=28.52 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCCCeeEEEEEE
Q psy10361 33 SDDWTLQLKYPQHKDTGIYECQVS 56 (236)
Q Consensus 33 ~~~~~L~i~~~~~~D~G~Y~C~v~ 56 (236)
.++..|++.|+...++|.|.|.+.
T Consensus 312 ~~~v~L~f~nap~~~SGLYVfVv~ 335 (542)
T PHA03283 312 QNRVDLLFKNAPASASGLYVFVLL 335 (542)
T ss_pred CCCcceEeccCCcccCceEEEEEE
Confidence 357899999999999999999876
No 400
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=36.39 E-value=35 Score=28.46 Aligned_cols=86 Identities=19% Similarity=0.272 Sum_probs=13.4
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecCCCce--eEEEEEEEEEEeeCCcccccCCCc-c----------cccCCCcEEEecC
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTTPHQA--HYIYLTVVVLVINDGKYLLVPEPE-T----------DIIGGPEVFIENG 154 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~~~g 154 (236)
..+.|.|.+++.+|+|.|+-...+..+.. ..+.|.|... ...+ ..|.+. + .+..........|
T Consensus 87 ~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~--~~~~--~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~G 162 (439)
T PF02480_consen 87 NKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGP--APDP--RTPPPHHPIVPHRHGATFHLKNYHSHVFSPG 162 (439)
T ss_dssp ---------------------------------------------------------------SEEEEEE--SEEE--TT
T ss_pred cCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCC--CcCC--CCCCCCCCCCCcccccEEEEeccceEEecCC
Confidence 34679999999999999998887655433 3455555521 1110 111110 0 0111234455689
Q ss_pred CeEEEEeEEeeCC---CC-CCeEEEee
Q psy10361 155 STINLTCVVRFSP---EP-PAYIFWNH 177 (236)
Q Consensus 155 ~~~~l~C~~~~~p---~p-~~~v~W~~ 177 (236)
+++.+.-.+.... .| ...+.|+.
T Consensus 163 dtf~~~v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 163 DTFHLSVHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp --EE---EEEEEESSS--EEEEEEEEE
T ss_pred CcEEEeEEEEeccCCCCCeeEEEEEEE
Confidence 9888777664331 11 23688985
No 401
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=36.15 E-value=27 Score=29.16 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=18.1
Q ss_pred CceEEEEcCCCCCCCeeEEEEEE
Q psy10361 34 DDWTLQLKYPQHKDTGIYECQVS 56 (236)
Q Consensus 34 ~~~~L~i~~~~~~D~G~Y~C~v~ 56 (236)
.+..|++.|+...++|.|.|.+.
T Consensus 267 ~~~~l~f~~a~~~~sGLYv~V~~ 289 (439)
T PF02480_consen 267 NGVDLQFTNAPESASGLYVFVVY 289 (439)
T ss_dssp TSSSEEESS--GGG-EEEEEEEE
T ss_pred CCcceEecCCCcccCceEEEEEE
Confidence 57899999999999999999876
No 402
>KOG0305|consensus
Probab=29.92 E-value=67 Score=27.20 Aligned_cols=55 Identities=22% Similarity=0.217 Sum_probs=31.7
Q ss_pred eeEeeCCeEEEEecceEecCCcceEEeecCCCCceEEEEcCCCCCCCeeEEEEEEEEecceeEEe
Q psy10361 2 SFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRHRDIHLL 66 (236)
Q Consensus 2 ~w~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v~~~~~~~~~~~ 66 (236)
.|..+..- +|+.|+.+ .|..+.+-. +.....+..-|+|.+.|.+.|.+...-.+.
T Consensus 350 awcP~q~~-lLAsGGGs--~D~~i~fwn-------~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~s 404 (484)
T KOG0305|consen 350 AWCPWQSG-LLATGGGS--ADRCIKFWN-------TNTGARIDSVDTGSQVCSLIWSKKYKELLS 404 (484)
T ss_pred eeCCCccC-ceEEcCCC--cccEEEEEE-------cCCCcEecccccCCceeeEEEcCCCCEEEE
Confidence 35544333 33333333 355555554 334445566799999999999886543433
No 403
>PHA03281 envelope glycoprotein E; Provisional
Probab=28.23 E-value=72 Score=27.29 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCCCCeeEEEEEE
Q psy10361 33 SDDWTLQLKYPQHKDTGIYECQVS 56 (236)
Q Consensus 33 ~~~~~L~i~~~~~~D~G~Y~C~v~ 56 (236)
.+...|++.++...++|.|.|.+.
T Consensus 472 ~n~vdL~F~nApasaSGLYVfVl~ 495 (642)
T PHA03281 472 DGGSALKFVDAAESLSGLYVFIIH 495 (642)
T ss_pred CCCcceEeccCCcccCceEEEEEE
Confidence 356789999999999999999876
No 404
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=27.07 E-value=1.6e+02 Score=18.04 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=35.0
Q ss_pred eEEEEeEEeeCCCCCCeEEEeecCeEEeeecCCCceEEEeecCcceEEEEEEcccCCCCCeEEEEEeCCCCCceEEEE
Q psy10361 156 TINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAKSVMVN 233 (236)
Q Consensus 156 ~~~l~C~~~~~p~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~ 233 (236)
...|...+.+. .+ .+.|+.++..+....... .+.+ .....|.|+-.+....|....|.
T Consensus 31 ~~~l~l~a~~~-~~--~~~W~vdg~~~g~~~~~~--------------~~~~---~~~~~G~h~l~vvD~~G~~~~V~ 88 (89)
T PF06832_consen 31 RQPLVLKAAGG-RG--PVYWFVDGEPLGTTQPGH--------------QLFW---QPDRPGEHTLTVVDAQGRSASVR 88 (89)
T ss_pred cceEEEEEeCC-CC--cEEEEECCEEcccCCCCC--------------eEEe---CCCCCeeEEEEEEcCCCCEEEEE
Confidence 44555555544 23 899999998873211110 2322 23467888888888888766654
No 405
>COG5475 Uncharacterized small protein [Function unknown]
Probab=26.61 E-value=1.3e+02 Score=16.90 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=14.9
Q ss_pred EEEcccCCCCCeEEEEEeCCCCC
Q psy10361 205 LLIQKARPSDNGKYQCNPANSQA 227 (236)
Q Consensus 205 L~i~~v~~~d~G~y~C~a~n~~g 227 (236)
.++..... .|.|.|...+..|
T Consensus 20 Mtvs~~ss--~Gmy~C~Wf~g~g 40 (60)
T COG5475 20 MTVSGYSS--DGMYECRWFDGYG 40 (60)
T ss_pred EEEecccc--CCeEEEEEecCCC
Confidence 44444433 3999999999887
No 406
>PHA03286 envelope glycoprotein E; Provisional
Probab=26.33 E-value=4e+02 Score=22.51 Aligned_cols=89 Identities=10% Similarity=0.064 Sum_probs=49.5
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce--eEEEEEEEEEEeeCCcccccCCCcc------cccCCCcEEEecCCeEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA--HYIYLTVVVLVINDGKYLLVPEPET------DIIGGPEVFIENGSTINLT 160 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~l~ 160 (236)
...|.|.+++.+++|.|+-...+..+.. ..+.+.|........+....|..++ .+..........|+++.+.
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vS 205 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDAS 205 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEE
Confidence 4579999999999999999888765433 5566666522111111111111100 0111224455689988776
Q ss_pred eEEeeC--CCC-CCeEEEee
Q psy10361 161 CVVRFS--PEP-PAYIFWNH 177 (236)
Q Consensus 161 C~~~~~--p~p-~~~v~W~~ 177 (236)
-..... ..+ ...+.|+.
T Consensus 206 v~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 206 VTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEEeecccCCCceEEEEEEE
Confidence 655421 112 34688975
No 407
>PHA03281 envelope glycoprotein E; Provisional
Probab=24.12 E-value=4.8e+02 Score=22.70 Aligned_cols=84 Identities=11% Similarity=0.150 Sum_probs=47.6
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCCCce--eEEEEEEEEEEeeCCcccccCCCcc--------ccc-CCCcEEEecCCeE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTPHQA--HYIYLTVVVLVINDGKYLLVPEPET--------DII-GGPEVFIENGSTI 157 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~g~~~ 157 (236)
.+.|.|.+++.+++|.|+--.....+.+ ..+.++|.. ++....|.+.. +.. .-......+|+++
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg-----~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTF 371 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKG-----DEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTF 371 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecC-----CcccCCCCCCccccccCceEEEeccceeEecCCCee
Confidence 4589999999999999997776554433 345566652 22111211110 000 0113344689988
Q ss_pred EEEeEEeeC--CCC-CCeEEEee
Q psy10361 158 NLTCVVRFS--PEP-PAYIFWNH 177 (236)
Q Consensus 158 ~l~C~~~~~--p~p-~~~v~W~~ 177 (236)
.+.-..... ..| ...+.|+.
T Consensus 372 sl~v~L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 372 SLAMHLQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred EEEEEEeeeccCCCceeEEEEEE
Confidence 877766533 222 34688975
No 408
>PHA03271 envelope glycoprotein C; Provisional
Probab=23.87 E-value=4.4e+02 Score=22.10 Aligned_cols=34 Identities=12% Similarity=0.267 Sum_probs=26.1
Q ss_pred CcceEEeecCCCCceEEEEcCCCCCCCeeEEEEE
Q psy10361 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQV 55 (236)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v 55 (236)
.++|.+-.+....+.+|.|+++...|+|.|...+
T Consensus 193 ~~ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~ 226 (490)
T PHA03271 193 GNKYFIWINKTTNTMGVEIRNVDYADNGYIQVIM 226 (490)
T ss_pred CceeEEeeccccceeeEEEEEeecccceEEEEEe
Confidence 4566666666677899999999999999774433
No 409
>PHA03290 envelope glycoprotein I; Provisional
Probab=22.41 E-value=2.7e+02 Score=22.38 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecCCC-ceeEEEEEEE
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTTPH-QAHYIYLTVV 124 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~ 124 (236)
..-.|.|.+.+.+|+|.|.-++.-... .+..+.+.+.
T Consensus 127 ~~vLL~I~~P~~~DSGiY~LRV~Ldga~~sDvF~lsv~ 164 (357)
T PHA03290 127 AEIIFKINKPGIEDAGIYLLLVQLDHSRLFDGFFLGLN 164 (357)
T ss_pred cceEEEeCCCCcccCeeEEEEEEeCCCcccceEEEEEE
Confidence 455799999999999999988866543 3344555554
No 410
>KOG4597|consensus
Probab=21.61 E-value=1e+02 Score=25.94 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecCCCce-eEEEEEEE
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVV 124 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v~ 124 (236)
....|.|-+....|+|.|+|.+.+..+.. ..+.+.+.
T Consensus 255 stcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 255 STCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCSSV 292 (560)
T ss_pred eeeeEEEcchhhcCCCceeeccccccceeeccceeeee
Confidence 34579999999999999999999876543 45555554
No 411
>PHA03289 envelope glycoprotein I; Provisional
Probab=21.49 E-value=2.6e+02 Score=22.27 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCCCCEEEEEEeecCC-CceeEEEEEEE
Q psy10361 89 DWTLQLKYPQHKDTGIYECQVSTTP-HQAHYIYLTVV 124 (236)
Q Consensus 89 ~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~ 124 (236)
+..|.|.+.+++|+|.|.-.+.-.. ..+..+.+.+.
T Consensus 121 gvLL~I~~Pr~~DSGiYyLRV~Ldga~~sDvF~lsv~ 157 (352)
T PHA03289 121 GLLLTIIEPRMSDTGIYYIRVSLAGRNKSDIFRTSVF 157 (352)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCCCccCceEEEEEE
Confidence 4579999999999999998886553 33344555554
No 412
>PHA03292 envelope glycoprotein I; Provisional
Probab=21.44 E-value=2.4e+02 Score=23.10 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCCCCCEEEEEEeecCCC-ceeEEEEEEE
Q psy10361 88 DDWTLQLKYPQHKDTGIYECQVSTTPH-QAHYIYLTVV 124 (236)
Q Consensus 88 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~ 124 (236)
....|.|.+.+.+|+|.|.-.+.-... ....+.+.+.
T Consensus 126 ~~vLL~I~~P~~~DSGiY~LRV~Ldga~~aDvF~lsvf 163 (413)
T PHA03292 126 TNVLLNITGPQPADSGAYILRVKLDHAPTADVFGLSAF 163 (413)
T ss_pred cceEEEeCCCCcccceeEEEEEEeCCCccCceeEEEEE
Confidence 346799999999999999998866543 3344555553
Done!