RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10361
(236 letters)
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 78.3 bits (192), Expect = 2e-18
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 60 HRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYI 119
+ L G D R +++ + T + ++ + D G Y C + T P +
Sbjct: 74 NPAQQTLYFGEKRALRDNRIQLVTS-TPHELSISISNVALADEGEYTCSIFTMPVRTAKS 132
Query: 120 YLTVVV 125
+TV+
Sbjct: 133 LVTVLG 138
Score = 62.1 bits (150), Expect = 2e-12
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 6 HRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ L G D R +++ + T + ++ + D G Y C +
Sbjct: 74 NPAQQTLYFGEKRALRDNRIQLVTS-TPHELSISISNVALADEGEYTCSIF 123
Score = 32.8 bits (74), Expect = 0.044
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 9/88 (10%)
Query: 154 GSTINLTCVVRFSPEPPAYIFW-NHNEAIISYDSQRGGVN---VITEKGETTVSYLLIQK 209
G T+ L C + + + W N + + + +R + + +S + I
Sbjct: 53 GGTVVLKC--QVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELS-ISISN 109
Query: 210 ARPSDNGKYQC--NPANSQAKSVMVNVL 235
+D G+Y C + +V VL
Sbjct: 110 VALADEGEYTCSIFTMPVRTAKSLVTVL 137
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 75.3 bits (185), Expect = 6e-18
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 60 HRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYI 119
+ L D R ++ + + ++ + D G Y C + T P +
Sbjct: 42 NPAQQTLYFDDKKALRDNRIELVRA-SWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKA 100
Query: 120 YLTVVV 125
YLTV+
Sbjct: 101 YLTVLG 106
Score = 59.1 bits (143), Expect = 1e-11
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 6 HRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ L D R ++ + + ++ + D G Y C +
Sbjct: 42 NPAQQTLYFDDKKALRDNRIELVRA-SWHELSISVSDVSLSDEGQYTCSLF 91
Score = 39.5 bits (92), Expect = 1e-04
Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 7/105 (6%)
Query: 136 VPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFW-NHNEAIISYDSQRGGVN-- 192
V + V + G T LTC V + W N + + +D ++ +
Sbjct: 3 VKGSQGQFPLTQNVTVVEGGTAILTCRV--DQNDNTSLQWSNPAQQTLYFDDKKALRDNR 60
Query: 193 VITEKGETTVSYLLIQKARPSDNGKYQC--NPANSQAKSVMVNVL 235
+ + + + SD G+Y C + + VL
Sbjct: 61 IELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVL 105
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 76.6 bits (188), Expect = 2e-17
Identities = 30/193 (15%), Positives = 63/193 (32%), Gaps = 26/193 (13%)
Query: 52 ECQVSFVR----HRDIHLLTTGRYTYTNDQRFRVINN--PTSDDWTLQLKYPQHKDTGIY 105
E +VS+ + + + + FR + +++ + L + G Y
Sbjct: 23 EIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNY 82
Query: 106 ECQVSTTPHQA-HYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVR 164
C++ + +L+VV P T + + S + +TC V
Sbjct: 83 LCRMKLGETEVTKQEHLSVVK-------------PLTLSVHSERSQFPDFSVLTVTCTVN 129
Query: 165 FSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPAN 224
P P ++ W E + + G + + G ++S + + C N
Sbjct: 130 AFPHP--HVQWLMPEGVEPAPTAANGGVMKEKDG--SLSVAVDLSLPKPWHLPVTCVGKN 185
Query: 225 S--QAKSVMVNVL 235
+A V V+
Sbjct: 186 DKEEAHGVYVSGY 198
Score = 33.8 bits (77), Expect = 0.028
Identities = 6/54 (11%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Query: 5 RHRDIHLLTTGRYTYTNDQRFRVINN--PTSDDWTLQLKYPQHKDTGIYECQVS 56
+ + + FR + +++ + L + G Y C++
Sbjct: 34 GEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMK 87
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 74.9 bits (184), Expect = 3e-16
Identities = 34/167 (20%), Positives = 50/167 (29%), Gaps = 26/167 (15%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKY 133
N QR V+ N D TL + D GIY+C V+ + V
Sbjct: 47 PNQQRISVVWND-DDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK--------- 96
Query: 134 LLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNV 193
+ + + G + C V S P I W H + + V
Sbjct: 97 --IFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPP--TIIWKHKGRDV---ILKKDVRF 149
Query: 194 ITEKGETTVSYLLIQKARPSDNGKYQCNPANS-----QAKSVMVNVL 235
I L I+ + +D G Y+C K + V V
Sbjct: 150 IVLSNNY----LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVN 192
Score = 69.1 bits (169), Expect = 4e-14
Identities = 47/263 (17%), Positives = 75/263 (28%), Gaps = 67/263 (25%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQV--------------------SFVR 59
N QR V+ N D TL + D GIY+C V F
Sbjct: 47 PNQQRISVVWND-DDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKN 105
Query: 60 H-RDIHLLT----------TGR-------------YTYTNDQRFRVINNPTSDDWTLQLK 95
D RF V++N LQ++
Sbjct: 106 APTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-----LQIR 160
Query: 96 YPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGS 155
+ D G Y C+ + + + V+V G
Sbjct: 161 GIKKTDEGTYRCEGRI-LARGEINFKDIQVIVNVPPTVQARQSIV-------NATANLGQ 212
Query: 156 TINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDN 215
++ L C PEP + W + I + + ++ ++ S L I+ +D
Sbjct: 213 SVTLVCDADGFPEP--TMSWTKDGEPIENEEEDDEKHIFSDDS----SELTIRNVDKNDE 266
Query: 216 GKYQC---NPANSQAKSVMVNVL 235
+Y C N A Q S+ + V
Sbjct: 267 AEYVCIAENKAGEQDASIHLKVF 289
Score = 46.8 bits (111), Expect = 2e-06
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 4/81 (4%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
G + C V + +++ N +S + QR + + S L I A
Sbjct: 17 GESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQR----ISVVWNDDDSSTLTIYNANID 72
Query: 214 DNGKYQCNPANSQAKSVMVNV 234
D G Y+C V
Sbjct: 73 DAGIYKCVVTAEDGTQSEATV 93
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 73.6 bits (180), Expect = 1e-15
Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 15/163 (9%)
Query: 76 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLL 135
+R + P+ D T++L + +D G+Y C+ +T P L + V+
Sbjct: 79 RERVEFLR-PSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMA-----KPT 132
Query: 136 VPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVIT 195
T + + + + TC PP+ + W + + N
Sbjct: 133 NWIEGTQAVLRAKKGQD-DKVLVATCTSANGK-PPSVVSWETRLKGEAEYQEIRNPN--- 187
Query: 196 EKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
T +S + +R + C + +S+ +NV
Sbjct: 188 -GTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQ 229
Score = 56.7 bits (136), Expect = 9e-10
Identities = 28/165 (16%), Positives = 47/165 (28%), Gaps = 26/165 (15%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKY 133
Q R N + +L + C V+ + ++ + V +Y
Sbjct: 178 AEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVN---YHMDRFKESLTLNV----QY 230
Query: 134 LLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNV 193
EPE I G + + LTC +P P W ++
Sbjct: 231 ----EPEVTIEGFDGNWYLQRMDVKLTCKADANP-PATEYHW-----------TTLNGSL 274
Query: 194 ITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
+ S G Y C NP +++ V VN+
Sbjct: 275 PKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT 319
Score = 39.3 bits (91), Expect = 6e-04
Identities = 12/100 (12%), Positives = 29/100 (29%), Gaps = 18/100 (18%)
Query: 154 GSTINLTCVVRFSPEPP--AYIFWNHN-----EAIISYDSQRGGVNVITEKGETTVSY-- 204
G+ + L C + W + + + Y+ G + +
Sbjct: 29 GTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPS 88
Query: 205 -----LLIQKARPSDNGKYQC----NPANSQAKSVMVNVL 235
+ + + D G Y C P ++ + + V+
Sbjct: 89 FTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVM 128
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 73.2 bits (179), Expect = 1e-15
Identities = 32/215 (14%), Positives = 63/215 (29%), Gaps = 28/215 (13%)
Query: 26 RVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNP 85
+ QL + + G F + + + R + +
Sbjct: 23 YLQVPNMEVTHVSQLTW--ARH-GESGSMAVFHQTQGPSYSESKRLEFVAARL-----GA 74
Query: 86 TSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIG 145
+ +L++ + +D G Y C T P + + + + VL +
Sbjct: 75 ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA-----------KPQNTAE 123
Query: 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYL 205
+V + CV PPA I W+ + + SQ G T S
Sbjct: 124 VQKVQLTGEPVPMARCVSTGG-RPPAQITWHSDLGGMPNTSQVPGF---LSGTVTVTSLW 179
Query: 206 LIQKARPSDNGKYQC---NPA--NSQAKSVMVNVL 235
++ + D C + + Q +V + V
Sbjct: 180 ILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY 214
Score = 57.4 bits (138), Expect = 5e-10
Identities = 39/283 (13%), Positives = 68/283 (24%), Gaps = 82/283 (28%)
Query: 3 FVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSF----V 58
F + + + R + + + +L++ + +D G Y C
Sbjct: 51 FHQTQGPSYSESKRLEFVAARL-----GAELRNASLRMFGLRVEDEGNYTCLFVTFPQGS 105
Query: 59 RHRDIHL----------------------------------------LTTGRYTYTNDQR 78
R DI L + Q
Sbjct: 106 RSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQV 165
Query: 79 FRVINNPTSDDWTLQLKYPQHKDTGIYECQVS----TTPHQAHYIYLTVVVLVINDGKYL 134
++ + L D C+V P + LTV
Sbjct: 166 PGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLT-VNLTV----------- 213
Query: 135 LVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVI 194
P + I G + + LTC R +P P W+ + + G
Sbjct: 214 YYPPEVS-ISGYDNNWYLGQNEATLTCDARSNP-EPTGYNWSTTMGPLPPFAVAQG---- 267
Query: 195 TEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
+ LLI+ N C N ++ + V V
Sbjct: 268 --------AQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 43.2 bits (101), Expect = 3e-05
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 19/101 (18%)
Query: 154 GSTINLTCVVRFSPEPPAY---IFWNHNEAIISY------------DSQRGGVNVITEKG 198
G ++ L C ++ + + W + S +S+R
Sbjct: 15 GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 74
Query: 199 ETTVSYLLIQKARPSDNGKYQC----NPANSQAKSVMVNVL 235
E + L + R D G Y C P S++ + + VL
Sbjct: 75 ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL 115
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 68.9 bits (168), Expect = 1e-14
Identities = 22/175 (12%), Positives = 47/175 (26%), Gaps = 42/175 (24%)
Query: 64 HLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTV 123
LT G + R + ++ L +K + +D+ Y C+V + + +
Sbjct: 43 SFLTKGPSKLNDRADSR-RSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGL 101
Query: 124 VVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIIS 183
+ + G ++ LT P +
Sbjct: 102 TAN--------------------SDTHLLQGQSLTLTLESPPGSSP--SVQC-------- 131
Query: 184 YDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ---AKSVMVNVL 235
+ I L + + D+G + C +Q + + VL
Sbjct: 132 ---RSPRGKNIQGGKT-----LSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 178
Score = 45.7 bits (108), Expect = 2e-06
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 14/94 (14%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVS---------- 203
G T+ LTC W ++ I +Q + K
Sbjct: 10 GDTVELTCTASQKKSIQ--FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67
Query: 204 -YLLIQKARPSDNGKYQCNPANSQAKSVMVNVLN 236
L+I+ + D+ Y C Q + V + V
Sbjct: 68 FPLIIKNLKIEDSDTYICE-VEDQKEEVQLLVFG 100
Score = 37.6 bits (87), Expect = 0.001
Identities = 21/139 (15%), Positives = 41/139 (29%), Gaps = 27/139 (19%)
Query: 10 HLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRHRDIHLLTTG 69
LT G + R + ++ L +K + +D+ Y C+V ++ L
Sbjct: 43 SFLTKGPSKLNDRADSR-RSLWDQGNFPLIIKNLKIEDSDTYICEVE--DQKEEVQLLVF 99
Query: 70 RYTYTNDQRF-----------------------RVINNPTSDDWTLQLKYPQHKDTGIYE 106
T +D TL + + +D+G +
Sbjct: 100 GLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWT 159
Query: 107 CQVSTTPHQAH-YIYLTVV 124
C V + I + V+
Sbjct: 160 CTVLQNQKKVEFKIDIVVL 178
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 67.2 bits (164), Expect = 1e-14
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 55 VSFVRHRDIHLLT--TGRYTYTN-DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVST 111
V + ++ L G+ + + ++ + SD WTL+L Q KD G+Y+C +
Sbjct: 31 VFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHH 90
Query: 112 TPHQAH-YIYLTVVVLVI 128
I+ L +
Sbjct: 91 KKPTGMIRIHQMNSELSV 108
Score = 58.3 bits (141), Expect = 2e-11
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 1 VSFVRHRDIHLLT--TGRYTYTN-DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSF 57
V + ++ L G+ + + ++ + SD WTL+L Q KD G+Y+C +
Sbjct: 31 VFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHH 90
Query: 58 VRHRDIHLL 66
+ + +
Sbjct: 91 KKPTGMIRI 99
Score = 33.3 bits (76), Expect = 0.016
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 11/78 (14%)
Query: 154 GSTINLTCVVRFSPEPPA---YIFW-NHNEAIIS--YDSQRGGVNVITE-KGETTVSY-- 204
T +L C S +FW + +++ Y + +V ++ G T+
Sbjct: 9 NETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDS 68
Query: 205 --LLIQKARPSDNGKYQC 220
L + + D G YQC
Sbjct: 69 WTLRLHNLQIKDKGLYQC 86
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 70.3 bits (171), Expect = 1e-14
Identities = 35/203 (17%), Positives = 71/203 (34%), Gaps = 45/203 (22%)
Query: 57 FVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTP-HQ 115
+ + + TGR+ R ++ + +D +L L+ Q D GIY C++
Sbjct: 55 VLFYYSNLSVPTGRF----QNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESM 110
Query: 116 AHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVR-FSPEPPAYIF 174
+ + VL ++ + G T + C ++ + +
Sbjct: 111 VMKKPVELWVLPEEP----------------RDLRVRVGDTTQMRCSIQSTEEKRVTKVN 154
Query: 175 W-------NHNEAIISYDSQ------------RGGVNVITEKGETTVSYLLIQKARPSDN 215
W E ++SYDS R V++ + S + +Q + SD
Sbjct: 155 WMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGS-IKLQTVKESDQ 213
Query: 216 GKYQC---NPANSQAKSVMVNVL 235
G Y C K+++++V+
Sbjct: 214 GIYTCSIYVGKLESRKTIVLHVV 236
Score = 42.6 bits (99), Expect = 4e-05
Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 20/109 (18%)
Query: 146 GPEVFIENGSTINLTCVVRFS-PEPPAYIFWNHN-------EAIISYDSQ--------RG 189
P++ + G ++ + CVV+ + + + W + E ++ Y S +
Sbjct: 12 SPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQN 71
Query: 190 GVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
+++ + S LL+Q + +D G Y C S V +
Sbjct: 72 RSHLVGDTFHNDGS-LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW 119
Score = 32.2 bits (72), Expect = 0.13
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 24 RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
R + + + +D +++L+ + D GIY C +
Sbjct: 189 RVDLTGDISRNDGSIKLQTVKESDQGIYTCSIY 221
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 69.1 bits (169), Expect = 1e-14
Identities = 35/174 (20%), Positives = 58/174 (33%), Gaps = 21/174 (12%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHY-IYLTVVVLVINDGK 132
R + + LQ+ P D G Y ++ + L+ +
Sbjct: 45 RYSDRVKTGVTG--EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAE 102
Query: 133 YLLVPEPETDIIGGPEVF--------IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISY 184
+ + + V I+ G +NLTC V P P + W NE ++
Sbjct: 103 FQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPP--EVSWLKNEKALA- 159
Query: 185 DSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
+ N+ E G T +Y I +D+GKY N S+ V+V
Sbjct: 160 QTDH--CNLKFEAGRT--AYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209
Score = 50.3 bits (120), Expect = 8e-08
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 10/95 (10%)
Query: 143 IIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTV 202
+ I L V + E + W+HN + I Y + GE
Sbjct: 6 LSATDLKIQSTAEGIQLYSFVTYYVEDLK-VNWSHNGSAIRYSDRV----KTGVTGEQ-- 58
Query: 203 SYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
+L I + P+D GKY + K+V ++
Sbjct: 59 IWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 93
Score = 29.1 bits (65), Expect = 0.97
Identities = 4/37 (10%), Positives = 7/37 (18%), Gaps = 1/37 (2%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ + D+G Y V
Sbjct: 159 AQTDHCNLKFEA-GRTAYFTINGVSTADSGKYGLVVK 194
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 70.7 bits (173), Expect = 1e-14
Identities = 36/174 (20%), Positives = 58/174 (33%), Gaps = 21/174 (12%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAH-YIYLTVVVLVINDGK 132
R + T + LQ+ P D G Y ++ + L+ +
Sbjct: 150 RYSDRVKTG--VTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAE 207
Query: 133 YLLVPEPETDIIGGPEVFIEN--------GSTINLTCVVRFSPEPPAYIFWNHNEAIISY 184
+ + + V G +NLTC V +PP + W NE ++
Sbjct: 208 FQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV--WGDPPPEVSWLKNEKALAS 265
Query: 185 DSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
D N+ E G T +Y I +D+GKY N S+ V+V
Sbjct: 266 D---DHCNLKFEAGRT--AYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314
Score = 65.3 bits (159), Expect = 1e-12
Identities = 28/164 (17%), Positives = 54/164 (32%), Gaps = 17/164 (10%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKY 133
+ D++ TL + KD GIYE + + + ++ +
Sbjct: 49 SVDEKHDF----KDGICTLLITEFSKKDAGIYEVILKDDRGKD---KSRLKLVDEAFKEL 101
Query: 134 LLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNV 193
++ + + I L V + E + W+HN + I Y + V
Sbjct: 102 MMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLK-VNWSHNGSAIRYSDR---VKT 157
Query: 194 ITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
+ L I + P+D GKY + K+V ++
Sbjct: 158 GVTGEQIW---LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 198
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 71.1 bits (174), Expect = 2e-14
Identities = 46/249 (18%), Positives = 78/249 (31%), Gaps = 46/249 (18%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRHRDIH--------------L 65
T Q + + TL +K +D+G Y C V+ +
Sbjct: 290 TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID 349
Query: 66 LTTGRYTYTNDQRF--RVINNPT-------------SDDWTLQLKYPQHKDTGIYECQVS 110
T + F + NP + L+++ + +D G+Y+C V
Sbjct: 350 PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVR 409
Query: 111 TTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGP-EVFIENGSTINLTCVVRFSPEP 169
+ + + I E +E G ++ L CV +P P
Sbjct: 410 N---DRESAEASAELKL-------GGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTP 459
Query: 170 PAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQ 226
I W + I+ ++ R V VSYL I +D G Y+C +
Sbjct: 460 E--ISWELDGKKIA-NNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVA 516
Query: 227 AKSVMVNVL 235
S +NV
Sbjct: 517 EHSAKLNVY 525
Score = 65.0 bits (158), Expect = 2e-12
Identities = 33/165 (20%), Positives = 50/165 (30%), Gaps = 25/165 (15%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHK-DTGIYECQVSTTPHQAHYIYLTVVVLVINDGK 132
+++ +V + TL ++ + D Y C + L V V+V
Sbjct: 568 PINRKQKV-----FPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMV----- 617
Query: 133 YLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVN 192
P E + G + L C V P I W + IS D
Sbjct: 618 -----LPRIIPFAFEEGPAQVGQYLTLHCSVPGGD-LPLNIDWTLDGQAISEDLGITTSR 671
Query: 193 VITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
V L I+ S G + C N A Q + +NV
Sbjct: 672 VGRRGSV-----LTIEAVEASHAGNFTCHARNLAGHQQFTTPLNV 711
Score = 59.6 bits (144), Expect = 2e-10
Identities = 31/167 (18%), Positives = 54/167 (32%), Gaps = 16/167 (9%)
Query: 72 TYTNDQRFRVINNPTSDDWTLQLKYPQHKDT-GIYECQVSTTPHQAHYIYLTVVVLVIND 130
D ++ V L ++ +D Y+C+ + T LVI +
Sbjct: 186 GAEYDGKYLV-----LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITE 240
Query: 131 GKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGG 190
VP + ST+ L C + P P W R
Sbjct: 241 PISSAVP-KVVSLAKFDMKTYSGSSTMALLCPAQGYPVP--VFRWYKFIEGT----TRKQ 293
Query: 191 VNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
V+ ++ + L+I+ A D+GKY C N ++ ++ V
Sbjct: 294 AVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 340
Score = 52.2 bits (125), Expect = 5e-08
Identities = 23/143 (16%), Positives = 41/143 (28%), Gaps = 23/143 (16%)
Query: 81 VINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPE 140
V ++D Y Q +Y C I V V + Y E
Sbjct: 97 VFPPFRAED------YRQEVHAQVYACLARNQFGSI--ISRDVHVRAVVAQYYEADVNKE 148
Query: 141 TDIIGGPEVFIENGSTINLTCVV-RFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGE 199
+ G++ + C++ F + + W+ +E + +
Sbjct: 149 H---------VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG 199
Query: 200 TTVSYLLIQKARPSD-NGKYQCN 221
L I++ P D YQC
Sbjct: 200 E----LHIREVGPEDGYKSYQCR 218
Score = 51.9 bits (124), Expect = 5e-08
Identities = 33/169 (19%), Positives = 54/169 (31%), Gaps = 36/169 (21%)
Query: 74 TNDQRFRVINNPTSDDW---TLQLKYPQHKDTGIYECQVS----TTPHQAHYIYLTVVVL 126
N+ R++V T + L + D G+Y+C H A
Sbjct: 471 ANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAK--------- 521
Query: 127 VINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDS 186
L V I + I G T+ +TC V P I W + + +
Sbjct: 522 -------LNVYGL-PYIRQMEKKAIVAGETLIVTCPVAGYPID--SIVWERDNRALPINR 571
Query: 187 QRGGVNVITEKGETTVSYLLIQKA-RPSDNGKYQCNPANSQAKSVMVNV 234
++ + G L+I+ R SD Y C N + S ++
Sbjct: 572 KQ----KVFPNGT-----LIIENVERNSDQATYTCVAKNQEGYSARGSL 611
Score = 51.9 bits (124), Expect = 5e-08
Identities = 21/162 (12%), Positives = 42/162 (25%), Gaps = 31/162 (19%)
Query: 82 INNPTSDDWTLQLKYPQHKDTGIYECQVS----TTPHQAHYIYLTVVVLVINDGKYLLVP 137
+ L ++ + G + C L V
Sbjct: 669 TSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTP----------------LNVY 712
Query: 138 EPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITE 196
P I P GS + C P+P + W + + ++
Sbjct: 713 VP-PRWILEPTDKAFAQGSDAKVECKADGFPKPQ--VTWKKAVGDTPGEYKDL---KKSD 766
Query: 197 KGETTVSYLLIQKARPSDNGKYQC---NPA-NSQAKSVMVNV 234
L + + ++ G Y C N + + +M++V
Sbjct: 767 NIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISV 808
Score = 42.2 bits (99), Expect = 7e-05
Identities = 22/148 (14%), Positives = 36/148 (24%), Gaps = 40/148 (27%)
Query: 92 LQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGP---- 147
+ + + K ++ G L P GP
Sbjct: 1 MNMPNERLKWLMLFAAVALIAC-----------------GSQTLAANPPDADQKGPVFLK 43
Query: 148 ----EVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVS 203
+ N + + C +P P I W ++ D G+ I+ G
Sbjct: 44 EPTNRIDFSNSTGAEIECKASGNPMP--EIIWIRSDGTAVGDVP--GLRQISSDG----- 94
Query: 204 YLLIQKARPSD------NGKYQCNPANS 225
L+ R D Y C N
Sbjct: 95 KLVFPPFRAEDYRQEVHAQVYACLARNQ 122
Score = 31.8 bits (72), Expect = 0.20
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Query: 47 DTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYE 106
EC+ + T + + +N ++ TL + Q + G Y
Sbjct: 730 SDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYL 789
Query: 107 CQVSTT--PHQAHYIYLTV 123
C+ + I ++V
Sbjct: 790 CEAINGIGSGLSAVIMISV 808
Score = 28.0 bits (62), Expect = 3.5
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 15 GRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
T + + +N ++ TL + Q + G Y C+
Sbjct: 752 VGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAI 793
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 69.0 bits (168), Expect = 4e-14
Identities = 29/231 (12%), Positives = 58/231 (25%), Gaps = 21/231 (9%)
Query: 14 TGRYT--YTNDQRFRV---INNPTSDDWTLQLKYPQHKDTGIYECQVSFVRHRDIHLLTT 68
TG YT +N + + +P + + + C ++ + L+
Sbjct: 69 TGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIEC 128
Query: 69 GRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVI 128
+ D F + C H T+ V
Sbjct: 129 DGKSLPTDLTFVPNPKAGI----TIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREA 184
Query: 129 NDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQR 188
++ ++ G T + C ++ W + +Q
Sbjct: 185 IKAIPVVSVPE-------TSHLLKKGDTFTVVCTIK-DVSTSVNSMWLKMNPQPQHIAQV 236
Query: 189 GGVNVITEKGETT-VSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
+ L I AR D+G + C N S + + V+
Sbjct: 237 KHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287
Score = 44.0 bits (103), Expect = 2e-05
Identities = 19/153 (12%), Positives = 39/153 (25%), Gaps = 28/153 (18%)
Query: 87 SDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGG 146
+ + + TG Y C S + Y++ V +P + G
Sbjct: 54 NKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVF---------------VRDPAKLFLVG 98
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLL 206
+F + S + C + P+ Y + + D + G +
Sbjct: 99 LPLFGKEDSDALVRCPLT-DPQVSQYSLIECDGKSLPTDLT---FVPNPKAG-----ITI 149
Query: 207 IQKARPSDNGKYQCNPAN----SQAKSVMVNVL 235
R +C + + V
Sbjct: 150 KNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVR 182
Score = 43.2 bits (101), Expect = 3e-05
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 19/91 (20%)
Query: 144 IGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVS 203
E+ +E G T++LTC+ P ++ W +
Sbjct: 17 PAQSELIVEAGDTLSLTCID------PDFVRWTFKTYFNEMVENKKNE------------ 58
Query: 204 YLLIQKARPSDNGKYQCNPANSQAKSVMVNV 234
+ +KA + G Y C+ +N S+ V V
Sbjct: 59 -WIQEKAEATRTGTYTCSNSNGLTSSIYVFV 88
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 68.3 bits (167), Expect = 8e-14
Identities = 47/263 (17%), Positives = 77/263 (29%), Gaps = 72/263 (27%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS--------------------FVR 59
+ QR V L + +D GIY CQ + F
Sbjct: 46 ISTQRVVVQ--KEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFRE 103
Query: 60 H-RDIHLLT----------TGR-------------YTYTNDQRFRVINNPTSDDWTLQLK 95
+ T +D RF ++ N LQ+
Sbjct: 104 VVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN-----LQIL 158
Query: 96 YPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGS 155
D GIY C+ I +++++N + +P+ + E G
Sbjct: 159 NINKSDEGIYRCEGRVEARG--EIDFRDIIVIVNVPPAISMPQKSFNAT------AERGE 210
Query: 156 TINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDN 215
+ +C SPEP I W N +I + + ++ + L ++ SD
Sbjct: 211 EMTFSCRASGSPEP--AISWFRNGKLIEENEKY----ILKGSN----TELTVRNIINSDG 260
Query: 216 GKYQC---NPANSQAKSVMVNVL 235
G Y C N A K + V
Sbjct: 261 GPYVCRATNKAGEDEKQAFLQVF 283
Score = 42.5 bits (100), Expect = 4e-05
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 11/95 (11%)
Query: 143 IIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETT 201
+ V + G + TC PE I W + + +QR + + E
Sbjct: 7 VTISLSKVELSVGESKFFTCTAIGEPES---IDWYNPQGEKIISTQR-----VVVQKEGV 58
Query: 202 VSYLLIQKARPSDNGKYQCNPANS--QAKSVMVNV 234
S L I A D G Y+C ++ Q + V +
Sbjct: 59 RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVL 93
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 68.0 bits (165), Expect = 1e-13
Identities = 27/172 (15%), Positives = 50/172 (29%), Gaps = 10/172 (5%)
Query: 73 YTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGK 132
Y + + NN + L + G Y C V+ + + + + +
Sbjct: 160 YMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSP 219
Query: 133 YLLVPEPETDIIGGPEVFIENGSTINLTCVVRF--SPEPPAYIFWNHNEAIISYDSQRG- 189
VP E G + + C V F + ++W + +
Sbjct: 220 KNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVT 279
Query: 190 ---GVNVITEKGETTVSYLLIQKARPSD-NGKYQC---NPANSQAKSVMVNV 234
++ + ET L I+K D Y C + AK+ V
Sbjct: 280 INESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331
Score = 50.3 bits (119), Expect = 1e-07
Identities = 30/149 (20%), Positives = 48/149 (32%), Gaps = 20/149 (13%)
Query: 86 TSDDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVVVLVINDGKYLLVPEPETDII 144
+ + L + DTG Y C + T + + L VV + +P + I
Sbjct: 75 SKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIE 134
Query: 145 GGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSY 204
G + + N+ S +P I W I N + +G
Sbjct: 135 YGIQRI----TCPNVDGYFPSSVKPT--ITWYMGCYKIQNF------NNVIPEGMN---- 178
Query: 205 LLIQKARPSDNGKYQC---NPANSQAKSV 230
L A S+NG Y C P N + +
Sbjct: 179 LSFLIALISNNGNYTCVVTYPENGRTFHL 207
Score = 37.5 bits (86), Expect = 0.002
Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 8/86 (9%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWN-HNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARP 212
+ S +W + + + R N I+++ + L +
Sbjct: 33 EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDV----LWFRPTLL 88
Query: 213 SDNGKYQC---NPANSQAKSVMVNVL 235
+D G Y C N + + V+
Sbjct: 89 NDTGNYTCMLRNTTYCSKVAFPLEVV 114
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 67.7 bits (165), Expect = 1e-13
Identities = 20/188 (10%), Positives = 53/188 (28%), Gaps = 21/188 (11%)
Query: 52 ECQVSFVRHRD-IHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 110
C ++ +D + L+ G + ++ + D+ Y C+
Sbjct: 110 PCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG-----FIIRKAKVLDSNTYVCKTM 164
Query: 111 TTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPP 170
++ + + V ++ + EP ++ G + C +
Sbjct: 165 VNGRESTSTGIWLKVNRVHPEPPQIKLEPS-------KLVRIRGEAAQIVCSATNAE-VG 216
Query: 171 AYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQA 227
+ + + + +K L + D G Y C N ++
Sbjct: 217 FNVILKRGDTKLEIPLNSDFQDNYYKKVRA----LSLNAVDFQDAGIYSCVASNDVGTRT 272
Query: 228 KSVMVNVL 235
++ V+
Sbjct: 273 ATMNFQVV 280
Score = 62.3 bits (151), Expect = 9e-12
Identities = 29/172 (16%), Positives = 48/172 (27%), Gaps = 26/172 (15%)
Query: 68 TGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHY-IYLTVVVL 126
G + +P S TL + K+TG Y C P I+L V
Sbjct: 29 NGSVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDP 88
Query: 127 VINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDS 186
+ + EV + G L C++ P +
Sbjct: 89 ------------AHSWNLLAQEVTVVEGQEAVLPCLIT-DPALKDSVSLMREGGRQVLRK 135
Query: 187 QRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC----NPANSQAKSVMVNV 234
+ +I+KA+ D+ Y C N S + + + V
Sbjct: 136 TV---YFFSPWR-----GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKV 179
Score = 43.8 bits (103), Expect = 2e-05
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 20/95 (21%)
Query: 143 IIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTV 202
GPE+ +E G T+ L CV + W+ T E+
Sbjct: 8 EPSGPELVVEPGETVTLRCVS------NGSVEWDGP-----------ISPYWTLDPESPG 50
Query: 203 SYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
S L + A + G Y+C + + ++ + V
Sbjct: 51 STLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYV 85
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 67.3 bits (164), Expect = 2e-13
Identities = 26/157 (16%), Positives = 47/157 (29%), Gaps = 9/157 (5%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKY 133
+ R V + + + K D GIY C V+ T A + L
Sbjct: 44 EDSPRLEVESK--GNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALS 101
Query: 134 LLVPEPETDIIGGPEV-FIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVN 192
P + V +E G + S + + NE I +
Sbjct: 102 HEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAK--VNYIFNEKEIFEGPKY---- 155
Query: 193 VITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAKS 229
+ T + + ++K + D G Y + +A +
Sbjct: 156 KMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATN 192
Score = 64.2 bits (156), Expect = 2e-12
Identities = 26/171 (15%), Positives = 54/171 (31%), Gaps = 20/171 (11%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKY 133
++++ + + + ++ Q +D G Y Q+ H + +V V +
Sbjct: 150 FEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNH-STVVLVGDVFKKLQK 208
Query: 134 LLVPEPETDIIGGPEVFIE-------NGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDS 186
+ + I F+E + L C V +I W +E IS D
Sbjct: 209 EAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIK-KETHIVWYKDEREISVDE 267
Query: 187 QRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
+ + + LLI + D G Y+ + + +
Sbjct: 268 KH--------DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310
Score = 29.6 bits (66), Expect = 0.91
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ R V + + + K D GIY C V+
Sbjct: 44 EDSPRLEVESK--GNKTKMTFKDLGMDDLGIYSCDVT 78
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 67.8 bits (165), Expect = 2e-13
Identities = 27/238 (11%), Positives = 61/238 (25%), Gaps = 37/238 (15%)
Query: 14 TGRYT--YTNDQRFRV---INNPTSDDWTLQLKYPQHKDTGIYECQVS--------FVRH 60
TG+YT + + + +P + Y + + + C ++
Sbjct: 92 TGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGC 151
Query: 61 RDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIY 120
+ L R+ + + + C V
Sbjct: 152 QGKPLPKDLRFIPDPKAGIMIKSVKRAYH------------RLCLHCSVDQEGKSVLSEK 199
Query: 121 LTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEA 180
+ V ++ + G +TC ++ Y W +
Sbjct: 200 FILKVRPAFKAVPVVSVSKA-------SYLLREGEEFTVTCTIKDVSSSV-YSTWKRENS 251
Query: 181 IISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
++ + + L I AR +D+G + C N S + + V+
Sbjct: 252 QTK-LQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV 308
Score = 63.5 bits (154), Expect = 6e-12
Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 16/164 (9%)
Query: 75 NDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHY-IYLTVVVLVINDGKY 133
+ + TL + + D+G++ C + T A+ L VV
Sbjct: 258 KYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVD-------- 309
Query: 134 LLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNV 193
+ VF+ +G ++L P P + W + + D
Sbjct: 310 --KGFINIFPMINTTVFVNDGENVDLIVEYEAFP-KPEHQQWIYMNRTFT-DKWEDYPKS 365
Query: 194 ITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
E VS L + + + ++ G Y N + A + V V
Sbjct: 366 ENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYV 409
Score = 50.4 bits (120), Expect = 2e-07
Identities = 25/154 (16%), Positives = 36/154 (23%), Gaps = 31/154 (20%)
Query: 91 TLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVF 150
L L + + G Y VS + + + V PE+
Sbjct: 376 ELHLTRLKGTEGGTYTFLVS---NSDVNAAIAF---------NVYVNTK-------PEIL 416
Query: 151 I-ENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRG------GVNVITEKGETTVS 203
+ L CV PEP I W S +N V
Sbjct: 417 TYDRLVNGMLQCVAAGFPEPT--IDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVV 474
Query: 204 YLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
I + NG +C N +
Sbjct: 475 QSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAF 508
Score = 48.9 bits (116), Expect = 5e-07
Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 28/134 (20%)
Query: 101 DTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLT 160
+ C + + L V P P + G ++ + G I L
Sbjct: 6 GAWDFLCVL--------LLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLL 57
Query: 161 CVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC 220
C P ++ W ++ E E + + +KA ++ GKY C
Sbjct: 58 C------TDPGFVKWTFE--------------ILDETNENKQNEWITEKAEATNTGKYTC 97
Query: 221 NPANSQAKSVMVNV 234
+ + S+ V V
Sbjct: 98 TNKHGLSNSIYVFV 111
Score = 42.3 bits (99), Expect = 8e-05
Identities = 17/151 (11%), Positives = 45/151 (29%), Gaps = 30/151 (19%)
Query: 91 TLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVF 150
+ + +TG Y C ++ IY+ V +P + ++
Sbjct: 81 EWITEKAEATNTGKYTCTNKHG--LSNSIYVF-------------VRDPAKLFLVDRSLY 125
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
+ + + C + PE Y + D + + G ++I+
Sbjct: 126 GKEDNDTLVRCPLT-DPEVTNYSLKGCQGKPLPKDLR---FIPDPKAG------IMIKSV 175
Query: 211 RPSDN-GKYQC----NPANSQAKSVMVNVLN 236
+ + + C + ++ ++ V
Sbjct: 176 KRAYHRLCLHCSVDQEGKSVLSEKFILKVRP 206
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 67.1 bits (163), Expect = 2e-13
Identities = 41/269 (15%), Positives = 71/269 (26%), Gaps = 71/269 (26%)
Query: 19 YTNDQRFRVINNP----TSDDWTLQLKYPQHKDTGIYECQVS------------------ 56
Y +D + V L + +D+G Y C V
Sbjct: 41 YKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENE 100
Query: 57 --------FVRHRDIHLLTTGRYTYTNDQRFRVINNPT--------------------SD 88
+ + + + G + F+ NN
Sbjct: 101 PNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV 160
Query: 89 DWTLQLKYPQHKDTGIYECQVSTTPHQAHY-----IYLTVVVLVINDGKYLLVPEPETDI 143
L + K G Y C S T Y I + ++ P ET
Sbjct: 161 KDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANET-- 218
Query: 144 IGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVIT------EK 197
+ ++ GS I L C V +W N ++I D G + + ++
Sbjct: 219 -----MEVDLGSQIQLICNVTGQLSD--IAYWKWNGSVIDEDDPVLGEDYYSVENPANKR 271
Query: 198 GETTVSYLLIQKARPSD-NGKYQCNPANS 225
T ++ L I + + C N+
Sbjct: 272 RSTLITVLNISEIESRFYKHPFTCFAKNT 300
Score = 55.5 bits (133), Expect = 2e-09
Identities = 18/173 (10%), Positives = 43/173 (24%), Gaps = 28/173 (16%)
Query: 73 YTNDQRFRVINNP----TSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVI 128
Y +D + V L + +D+G Y C V + ++ + + + +
Sbjct: 41 YKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNS---SYCLRIKISAKFV 97
Query: 129 NDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPE----PPAYIFWNHNEAIISY 184
+ L + + L C + + W + +
Sbjct: 98 ENEPNLCYNAQAIF-----KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL 152
Query: 185 DSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
D+ L++ G Y C + + +
Sbjct: 153 DNIHFSGVK---------DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVI 196
Score = 41.2 bits (96), Expect = 1e-04
Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 10/90 (11%)
Query: 149 VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQ 208
+ C + + I W +++ +++ + I + E L
Sbjct: 15 LVSSANEIDVRPCPLNPNEHKGT-ITWYKDDSKTPVSTEQA--SRIHQHKEK----LWFV 67
Query: 209 KARPSDNGKYQC---NPANSQAKSVMVNVL 235
A+ D+G Y C N + + +
Sbjct: 68 PAKVEDSGHYYCVVRNSSYCLRIKISAKFV 97
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 65.3 bits (159), Expect = 4e-13
Identities = 32/158 (20%), Positives = 54/158 (34%), Gaps = 25/158 (15%)
Query: 85 PTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA--HYIYLTVVVL-VINDGKYLLVPEPET 141
P + L KD G Y C+V+ + L V + V E +
Sbjct: 60 PNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKL 119
Query: 142 DIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGET 200
I P + GST+ L CV SP P + W NE +++++++
Sbjct: 120 QICVEPTSQKLMPGSTLVLQCVAVGSPIP--HYQWFKNELPLTHETKK------------ 165
Query: 201 TVSYLLIQKARPSDNGKYQCNPANS----QAKSVMVNV 234
++ G Y C+ N +K V + +
Sbjct: 166 ---LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIII 200
Score = 41.4 bits (97), Expect = 9e-05
Identities = 19/93 (20%), Positives = 25/93 (26%), Gaps = 19/93 (20%)
Query: 134 LLVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVN 192
LVP + I PE + G + L C P W I +
Sbjct: 13 GLVPRG-SKITVNPESKAVLAGQFVKLCCRATGHPFV--QYQWFKMNKEIPNGNT----- 64
Query: 193 VITEKGETTVSYLLIQKARPSDNGKYQCNPANS 225
S L+ D G Y C N+
Sbjct: 65 ----------SELIFNAVHVKDAGFYVCRVNNN 87
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 66.4 bits (162), Expect = 7e-13
Identities = 24/166 (14%), Positives = 58/166 (34%), Gaps = 26/166 (15%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKY 133
+ +++++++ + ++ + D G Y+C+ S +
Sbjct: 426 RSGKKYKIMSE--NFLTSIHILNVDSADIGEYQCKASNDVGSDTCVG------------S 471
Query: 134 LLVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVN 192
+ + P + + G + L + + + W ++ I +S
Sbjct: 472 ITLKAP-PRFVKKLSDISTVVGEEVQLQATIEGAEPI--SVAWFKDKGEIVRESDN---- 524
Query: 193 VITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
I ++ L +A P++ GKY C N A +Q ++VL
Sbjct: 525 -IWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569
Score = 64.1 bits (156), Expect = 5e-12
Identities = 30/181 (16%), Positives = 50/181 (27%), Gaps = 34/181 (18%)
Query: 59 RHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS-TTPHQAH 117
+ + G Y T + + TL + D G Y C S +
Sbjct: 232 AKDNREIRPGGNYKMTLVE----------NTATLTVLKVTKGDAGQYTCYASNVAGKDSC 281
Query: 118 YIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNH 177
L V P P ++ C + P + W
Sbjct: 282 SAQLGVQEP------------PRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLWYK 327
Query: 178 NEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
+E I +S + ++ + L + D+G Y C N A S + S + V
Sbjct: 328 DETEIQ-ESSKFRMSFVESVAV-----LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV 381
Query: 235 L 235
Sbjct: 382 K 382
Score = 62.9 bits (153), Expect = 9e-12
Identities = 40/277 (14%), Positives = 77/277 (27%), Gaps = 79/277 (28%)
Query: 5 RHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS-------- 56
+ + G Y T + + TL + D G Y C S
Sbjct: 232 AKDNREIRPGGNYKMTLVE----------NTATLTVLKVTKGDAGQYTCYASNVAGKDSC 281
Query: 57 -----------FVRH-RDIHLLTTGRYTY----------------------TNDQRFRVI 82
F++ ++ +T +FR+
Sbjct: 282 SAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMS 341
Query: 83 NNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETD 142
L++ +D+G Y C+ A + + V P P
Sbjct: 342 F--VESVAVLEMYNLSVEDSGDYTCEAHN---AAGSASSSTSLKV-------KEP-P--V 386
Query: 143 IIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETT 201
P V G+ ++L C ++ +P + W+ ++ + + I + T
Sbjct: 387 FRKKPHPVETLKGADVHLECELQGTPPF--QVSWHKDKRELRSGKKY----KIMSENFLT 440
Query: 202 VSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
+ I +D G+YQC N S + +
Sbjct: 441 S--IHILNVDSADIGEYQCKASNDVGSDTCVGSITLK 475
Score = 61.4 bits (149), Expect = 3e-11
Identities = 23/165 (13%), Positives = 50/165 (30%), Gaps = 24/165 (14%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVVVLVINDGK 132
+ +++ ++ +L + H D G Y C+ + L + +
Sbjct: 47 RSAPAYKM--QFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPS- 103
Query: 133 YLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVN 192
+ + V G + C + S + W + ++ D +
Sbjct: 104 --FARKLKD-------VHETLGFPVAFECRINGSEPLQ--VSWYKDGELLK-DDANLQTS 151
Query: 193 VITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
I L I + S G+Y C NP + + S + +
Sbjct: 152 FIHNVAT-----LQILQTDQSHVGQYNCSASNPLGTASSSAKLTL 191
Score = 55.2 bits (133), Expect = 4e-09
Identities = 30/165 (18%), Positives = 47/165 (28%), Gaps = 24/165 (14%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS-TTPHQAHYIYLTVVVLVINDGK 132
+D + + TLQ+ G Y C S + LT+
Sbjct: 143 KDDANLQTSFI--HNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEH------ 194
Query: 133 YLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVN 192
P + V + G + C V + I W + I G
Sbjct: 195 ----EVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIK--ITWAKDNREIRPG---GNYK 245
Query: 193 VITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
+ + T L + K D G+Y C N A + S + V
Sbjct: 246 MTLVENTAT---LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 287
Score = 44.0 bits (104), Expect = 2e-05
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLL 206
V G I L C V +PE I W + + + V+ L+
Sbjct: 13 EHVEAAIGEPITLQCKVDGTPEIR--IAWYKEHTKLRSAPA------YKMQFKNNVASLV 64
Query: 207 IQKARPSDNGKYQC---NPANSQAKSVMVNV 234
I K SD G+Y C N + A S ++ +
Sbjct: 65 INKVDHSDVGEYTCKAENSVGAVASSAVLVI 95
Score = 28.6 bits (64), Expect = 2.1
Identities = 18/148 (12%), Positives = 42/148 (28%), Gaps = 47/148 (31%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS-------------------FVRH 60
+ +++++++ + ++ + D G Y+C+ S FV+
Sbjct: 426 RSGKKYKIMSE--NFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKK 483
Query: 61 -RDIHL----------------------LTTGRYTYTNDQRFRVINNPTSDDWTLQLKYP 97
DI + + + TLQ
Sbjct: 484 LSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSE--NIATLQFSRA 541
Query: 98 QHKDTGIYECQVSTTPHQA-HYIYLTVV 124
+ + G Y CQ+ + L+V+
Sbjct: 542 EPANAGKYTCQIKNEAGTQECFATLSVL 569
Score = 28.2 bits (63), Expect = 2.5
Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 2/42 (4%)
Query: 15 GRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ + + TLQ + + G Y CQ+
Sbjct: 515 KGEIVRESDNIWISYSE--NIATLQFSRAEPANAGKYTCQIK 554
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 65.6 bits (159), Expect = 8e-13
Identities = 26/155 (16%), Positives = 52/155 (33%), Gaps = 10/155 (6%)
Query: 86 TSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIG 145
+ L + P+ +D+G Y+C V + + ++ + +I
Sbjct: 178 SQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIP---SQDHRFKLIL 234
Query: 146 GPEVFIENGSTINLTCVVRFSPEP--PAYIFWNHNEAIISYDSQRGGVNVITEKGETTVS 203
P++ + G N+TC + I W + I G +++T G T +
Sbjct: 235 DPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWII-GLDFGVYSILTSSGGITEA 293
Query: 204 YLLIQKARPSDNGK-YQC---NPANSQAKSVMVNV 234
L + G Y C N + + V +
Sbjct: 294 TLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
Score = 51.4 bits (122), Expect = 6e-08
Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 25/167 (14%)
Query: 72 TYTNDQRFRVINNPTSDDWTLQLKYPQHKDTG-IYECQVSTTPHQAHYIYLTVVVLVIND 130
+ + R N + L + D+ Y C V+T + +
Sbjct: 71 NWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIR---- 126
Query: 131 GKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGG 190
+P + I E+ + I+L C + + I W N + D
Sbjct: 127 -------KPPSCIPETYELGTHDKYGIDLYCGI-LYAKHYNNITWYKNNQELIIDG---- 174
Query: 191 VNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
K + L+I D+G+Y C ++V+
Sbjct: 175 -----TKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSR 216
Score = 34.8 bits (79), Expect = 0.018
Identities = 14/106 (13%), Positives = 28/106 (26%), Gaps = 5/106 (4%)
Query: 132 KYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGV 191
K P G G + C + +N + ++++ ++ G
Sbjct: 22 KDSKWLNPSCMFGGTMNDMAALGEPFSAKCPP--IEDSLLSHRYNDKDNVVNW--EKIGK 77
Query: 192 NVITEKGETTVSYLLIQKARPSDNG-KYQCNPANSQAKSVMVNVLN 236
L I +D+ +Y C V V +
Sbjct: 78 TRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRS 123
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 63.6 bits (155), Expect = 8e-13
Identities = 35/165 (21%), Positives = 59/165 (35%), Gaps = 26/165 (15%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKY 133
+D RF ++ N LQ+ D GIY C+ I +++++N
Sbjct: 46 ISDNRFAMLANNN-----LQILNINKSDEGIYRCEGRVEARG--EIDFRDIIVIVNVPPA 98
Query: 134 LLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNV 193
+ +P+ + E G + +C SPEP I W N +I + + +
Sbjct: 99 ISMPQKSFNAT------AERGEEMTFSCRASGSPEP--AISWFRNGKLIEENEKY----I 146
Query: 194 ITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
+ L ++ SD G Y C N A K + V
Sbjct: 147 LKGSNTE----LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187
Score = 42.1 bits (99), Expect = 4e-05
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 14/85 (16%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHN-EAIISYDSQRGGVNVITEKGETTVSYLLIQKARP 212
G + C V SP P + W ++ E + + R + L I
Sbjct: 17 GEDAEVVCRVSSSPAP--AVSWLYHNEEVTTISDNR---FAMLANNN-----LQILNINK 66
Query: 213 SDNGKYQC---NPANSQAKSVMVNV 234
SD G Y+C A + + V
Sbjct: 67 SDEGIYRCEGRVEARGEIDFRDIIV 91
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 63.7 bits (155), Expect = 9e-13
Identities = 27/167 (16%), Positives = 50/167 (29%), Gaps = 37/167 (22%)
Query: 75 NDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTT--PHQAHYIYLTVVVLVINDGK 132
N + + + L LK + D G Y CQV + ++LTV +
Sbjct: 45 NLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGV------ 98
Query: 133 YLLVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGV 191
P P+ + + + L+C PEP I W I
Sbjct: 99 ------PF--FTVEPKDLAVPPNAPFQLSCEAVGPPEP-VTIVWWRGTTKIG-------- 141
Query: 192 NVITEKGETTVSYLLIQKARPSDNGKYQCNPANS----QAKSVMVNV 234
S ++ + + + C N +++ V++
Sbjct: 142 -------GPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181
Score = 47.5 bits (113), Expect = 4e-07
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 143 IIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETT 201
++G P + + G + L C V EP I W + A++ Q I +
Sbjct: 5 LMGAPVKLTVSQGQPVKLNCSVEGMEEP--DIQWVKDGAVVQNLDQLY----IPVSEQHW 58
Query: 202 VSYLLIQKARPSDNGKYQCNPANS 225
+ +L ++ SD G+Y C +
Sbjct: 59 IGFLSLKSVERSDAGRYWCQVEDG 82
Score = 27.5 bits (61), Expect = 2.9
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 21 NDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
N + + + L LK + D G Y CQV
Sbjct: 45 NLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE 80
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 65.9 bits (160), Expect = 1e-12
Identities = 22/248 (8%), Positives = 57/248 (22%), Gaps = 51/248 (20%)
Query: 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS-------------------FVRHRD 62
F + N ++ + G Y + + R
Sbjct: 92 QPHFDLQNRGVV---SMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRP 148
Query: 63 IHLLTTGRYT---------------YTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYEC 107
+ D + + + K C
Sbjct: 149 YFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRC 208
Query: 108 QVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSP 167
+ T+ + +T P++F++ G + + C
Sbjct: 209 CARNELGRECTRLFTIDL-------------NQTPQTTLPQLFLKVGEPLWIRCKAVHVN 255
Query: 168 EPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA 227
+ W + + T + + + + +D G Y C+ + +
Sbjct: 256 HGFG-LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS 314
Query: 228 KSVMVNVL 235
+S +V ++
Sbjct: 315 QSALVTIV 322
Score = 55.5 bits (133), Expect = 3e-09
Identities = 19/145 (13%), Positives = 45/145 (31%), Gaps = 18/145 (12%)
Query: 98 QHKDTGIYECQVSTTPHQAHYI-----YLTVVVLVINDGKYLLVPEPETDIIGGPEVFIE 152
++D + +C + + + Y V + G L T + V ++
Sbjct: 3 GNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGT-VYEAAAVEVD 61
Query: 153 NGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARP 212
++I L +V W + ++ + V ++I K
Sbjct: 62 VSASITLQVLVDAPGNIS--CLWVFKHSSLNCQPH-------FDLQNRGVVSMVILKMTE 112
Query: 213 SDNGKYQC---NPANSQAKSVMVNV 234
+ G+Y + A + V++
Sbjct: 113 TQAGEYLLFIQSEATNYTILFTVSI 137
Score = 52.4 bits (125), Expect = 4e-08
Identities = 17/171 (9%), Positives = 37/171 (21%), Gaps = 32/171 (18%)
Query: 73 YTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHY-IYLTVVVLVINDG 131
+ + F + +++ G Y Q L +
Sbjct: 361 TFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRR------ 414
Query: 132 KYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGV 191
+ S +C P P W ++
Sbjct: 415 ---------------KPQVLAEASASQASCFSDGYPLPS--WTWKKCSDKSPNCTEEITE 457
Query: 192 NVITEKGETTV-----SYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
V K V S + + +C N + +++++N
Sbjct: 458 GVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNS 508
Score = 47.8 bits (113), Expect = 1e-06
Identities = 22/147 (14%), Positives = 34/147 (23%), Gaps = 28/147 (19%)
Query: 91 TLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVF 150
+ DTG Y C S P Q+ +T+V G E
Sbjct: 291 FAFVSSVARNDTGYYTCSSSKHPSQS--ALVTIVEK----GFINATNSSED-------YE 337
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
I+ + P W + +KG +
Sbjct: 338 IDQYEEFCFSVRF--KAYPQIRCTWTFSRKSFP----------CEQKGLDNGYSISKFCN 385
Query: 211 RPSDNGKYQC---NPANSQAKSVMVNV 234
G+Y N K +N+
Sbjct: 386 HKHQPGEYIFHAENDDAQFTKMFTLNI 412
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 64.5 bits (156), Expect = 1e-12
Identities = 30/202 (14%), Positives = 60/202 (29%), Gaps = 28/202 (13%)
Query: 56 SFVRHRDIHLLTTGRYTYTNDQRFR-VINNPTSDDWTLQLKYPQHKDTGIYECQVSTT-- 112
++ + + F + TL+L + +D G Y CQV+
Sbjct: 55 NYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSI 114
Query: 113 PHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAY 172
+ +VV+ V P + V ++ G+ I +TC + A
Sbjct: 115 RTEFGLDAKSVVLKVTGH-----TPSNNVHVSTAEVVQVDEGNDITMTCPC--TDCANAN 167
Query: 173 IFWNHN------------EAIISYDSQRGGVNVITEKGETTVSY---LLIQKARPSDNGK 217
+ W + + + + G + S L+I+ A+ +D G+
Sbjct: 168 VTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGR 227
Query: 218 YQC---NPANSQAKSVMVNVLN 236
C +L
Sbjct: 228 VWCELATGQGELDADRSSTILK 249
Score = 40.3 bits (93), Expect = 2e-04
Identities = 19/107 (17%), Positives = 30/107 (28%), Gaps = 24/107 (22%)
Query: 147 PEVFIENGSTINLTCVVRFSPE-PPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSY- 204
EV + G T+ L C + + + P I W + G +G V
Sbjct: 10 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESD 69
Query: 205 ----------------------LLIQKARPSDNGKYQCNPANSQAKS 229
L + P D G+Y C A ++
Sbjct: 70 SYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRT 116
Score = 32.2 bits (72), Expect = 0.11
Identities = 9/83 (10%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
Query: 45 HKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGI 104
+ +E + + G ++++ R + L ++ + D G
Sbjct: 171 YTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGAR---NLVIRAAKITDAGR 227
Query: 105 YECQVSTTPHQAHY-IYLTVVVL 126
C+++T + T++ +
Sbjct: 228 VWCELATGQGELDADRSSTILKV 250
Score = 29.5 bits (65), Expect = 0.92
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 2 SFVRHRDIHLLTTGRYTYTNDQRFR-VINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
++ + + F + TL+L + +D G Y CQV+
Sbjct: 55 NYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVA 110
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 63.7 bits (154), Expect = 1e-12
Identities = 23/153 (15%), Positives = 41/153 (26%), Gaps = 13/153 (8%)
Query: 87 SDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGG 146
+ G+ C+ I VVV+ + +
Sbjct: 61 DSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVG--------YRIYDVVLSPS 112
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDS--QRGGVNVITEKGETTVSY 204
+ + G + L C R W + + + R + + +S
Sbjct: 113 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 172
Query: 205 LLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
L I SD G Y C + ++ S V V
Sbjct: 173 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 205
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 65.5 bits (159), Expect = 1e-12
Identities = 32/198 (16%), Positives = 54/198 (27%), Gaps = 35/198 (17%)
Query: 52 ECQVS--------FVRHRDIHLLTTG-RYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDT 102
C S R+ + + G R ++ + + F I +
Sbjct: 149 PCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGF-TIPSYMISY------------A 195
Query: 103 GIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCV 162
G+ C+ I VVV+ +L P + + G + L C
Sbjct: 196 GMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPS--------HGIELSVGEKLVLNCT 247
Query: 163 VRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETT--VSYLLIQKARPSDNGKYQC 220
R W + + + E +S L I SD G Y C
Sbjct: 248 ARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTC 307
Query: 221 ---NPANSQAKSVMVNVL 235
+ ++ S V V
Sbjct: 308 AASSGLMTKKNSTFVRVH 325
Score = 61.7 bits (149), Expect = 3e-11
Identities = 26/154 (16%), Positives = 43/154 (27%), Gaps = 33/154 (21%)
Query: 91 TLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVVVLVINDGKYLLVPEPETDIIGGPEV 149
TL + DTG Y+C T + Y+Y+ +D G +
Sbjct: 87 TLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYR--------SPFIASVSDQHGVVYI 138
Query: 150 FIENGSTINLTCVVRFSPEPPAYIFWNHNEAI------ISYDSQRGGVNVITEKGETTVS 203
T+ + C+ S + + IS+DS++G
Sbjct: 139 TENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKG-------------- 184
Query: 204 YLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
I S G C S + + V
Sbjct: 185 -FTIPSYMISYAGMVFCEAKINDESYQSIMYIVV 217
Score = 60.2 bits (145), Expect = 1e-10
Identities = 34/186 (18%), Positives = 58/186 (31%), Gaps = 25/186 (13%)
Query: 54 QVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTP 113
Q + ++ + +N T+D ++LK +D G Y C
Sbjct: 589 QPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRK 648
Query: 114 -HQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPA 171
+ H + + VL P I G E G +I ++C +P P
Sbjct: 649 TKKRHCVVRQLTVLER--------VAPT--ITGNLENQTTSIGESIEVSCTASGNPPP-- 696
Query: 172 YIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAK 228
I W + + DS V+ + L I++ R D G Y C +
Sbjct: 697 QIMWFKDNETLVEDSGI----VLKDGN----RNLTIRRVRKEDEGLYTCQACSVLGCAKV 748
Query: 229 SVMVNV 234
+
Sbjct: 749 EAFFII 754
Score = 55.9 bits (134), Expect = 3e-09
Identities = 27/164 (16%), Positives = 47/164 (28%), Gaps = 25/164 (15%)
Query: 75 NDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYL 134
D + + + TL + D G+Y C S+ + V V
Sbjct: 275 RDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN---STFVRVHEKPFVA 331
Query: 135 LVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVI 194
E+ V G + + P P I W N + +
Sbjct: 332 FGSGMESL------VEATVGERVRIPAKYLGYPPP--EIKWYKNGIPLESNHTI------ 377
Query: 195 TEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
L I + D G Y NP + + +S +V+++
Sbjct: 378 -----KAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLV 416
Score = 53.6 bits (128), Expect = 2e-08
Identities = 27/225 (12%), Positives = 55/225 (24%), Gaps = 39/225 (17%)
Query: 31 PTSDDWTLQLKYP---QHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTS 87
P W QL+ + R + G N +F +I
Sbjct: 453 PHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNK 512
Query: 88 DDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVVVLVINDGKYLLVPEPETDIIGG 146
L + +Y+C+ + I V +I
Sbjct: 513 T--VSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRG--------------PEITLQ 556
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAII--------------SYDSQRGGVN 192
P++ +++L C S + W + D+
Sbjct: 557 PDMQPTEQESVSLWCTADRSTFE--NLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNA 614
Query: 193 VITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
+ + + ++ A D G Y C + + V+ +
Sbjct: 615 TMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQL 659
Score = 51.3 bits (122), Expect = 9e-08
Identities = 30/177 (16%), Positives = 51/177 (28%), Gaps = 44/177 (24%)
Query: 91 TLQLKYPQHKDTGIYECQVS---TTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGP 147
L + +DTG Y ++ + Q+H + L V V P+ + P
Sbjct: 382 VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVP----------PQIGEKSLISP 431
Query: 148 EVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRG------------------ 189
+ G+T LTC V P PP +I W +
Sbjct: 432 VDSYQYGTTQTLTCTVYAIP-PPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVED 490
Query: 190 --GVNVITEKGETTV-------SYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
G N I + + + + Y+C N + + +V
Sbjct: 491 FQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHV 547
Score = 50.9 bits (121), Expect = 1e-07
Identities = 19/137 (13%), Positives = 39/137 (28%), Gaps = 27/137 (19%)
Query: 101 DTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLT 160
++ C + + ++ L + + + I+ +T+ +T
Sbjct: 8 AVALWLCVETRAASVG--------LPSVSLDLPRLSIQKD-------ILTIKANTTLQIT 52
Query: 161 CVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC 220
C + W +N++ V V L I K +D G Y+C
Sbjct: 53 C----RGQRDLDWLWPNNQSGSEQR-----VEVTECSDGLFCKTLTIPKVIGNDTGAYKC 103
Query: 221 ---NPANSQAKSVMVNV 234
+ V V
Sbjct: 104 FYRETDLASVIYVYVQD 120
Score = 27.8 bits (61), Expect = 3.3
Identities = 9/52 (17%), Positives = 17/52 (32%)
Query: 5 RHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
++ + +N T+D ++LK +D G Y C
Sbjct: 594 HVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQ 645
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 64.6 bits (157), Expect = 2e-12
Identities = 34/178 (19%), Positives = 61/178 (34%), Gaps = 29/178 (16%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLV-INDGK 132
+R V LQ+ H+D+G Y C+ T + + V D +
Sbjct: 51 VPSERVLV------GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDE 104
Query: 133 YLLVPEPETDIIGGPEVFIEN------------GSTINLTCVVRFSPEPPAYIFWNHNEA 180
+T + G + +T+ C +P P I W N
Sbjct: 105 DGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTP--SISWLKNGR 162
Query: 181 IISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
+ + GG+ + ++ L+++ PSD G Y C N S ++ ++VL
Sbjct: 163 EFRGEHRIGGIKLRHQQWS-----LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL 215
Score = 60.8 bits (147), Expect = 3e-11
Identities = 31/160 (19%), Positives = 47/160 (29%), Gaps = 21/160 (13%)
Query: 87 SDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGG 146
W+L ++ D G Y C V I T + V+ P G
Sbjct: 177 HQQWSLVMESVVPSDRGNYTCVVENK---FGSIRQTYTLDVLE-----RSPHRPILQAGL 228
Query: 147 PE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVIT-------EKG 198
P GS + C V +P +I W + + G +T
Sbjct: 229 PANQTAVLGSDVEFHCKVYSDAQP--HIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTT 286
Query: 199 ETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
+ + L + D G+Y C N S + VL
Sbjct: 287 DKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL 326
Score = 40.8 bits (95), Expect = 2e-04
Identities = 17/101 (16%), Positives = 28/101 (27%), Gaps = 12/101 (11%)
Query: 136 VPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVI 194
E G E + +G + L+C P W + +
Sbjct: 4 AAEVPGPEPGQQEQLVFGSGDAVELSCPPPGG-GPMGPTVWVKDGTGLVPS--------- 53
Query: 195 TEKGETTVSYLLIQKARPSDNGKYQCNPANSQAKSVMVNVL 235
E+ L + A D+G Y C +Q +V
Sbjct: 54 -ERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVR 93
Score = 27.3 bits (60), Expect = 5.0
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 33 SDDWTLQLKYPQHKDTGIYECQVS 56
W+L ++ D G Y C V
Sbjct: 177 HQQWSLVMESVVPSDRGNYTCVVE 200
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 65.0 bits (157), Expect = 2e-12
Identities = 29/197 (14%), Positives = 59/197 (29%), Gaps = 22/197 (11%)
Query: 37 TLQLKY-PQHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLK 95
T P+ + + C+ S + D+ + T G+ + R + +++ +
Sbjct: 236 TFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVIT 295
Query: 96 YPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGS 155
+ +D G Y C + + L V E T V GS
Sbjct: 296 GLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLF--------VNEESTIPRSPTVVKGVAGS 347
Query: 156 TINLTCVVRFSPEPPAYIFWNHNEAII------------SYDSQRGGVNVITEKGETTVS 203
++ + C + +W E +Q G + E+
Sbjct: 348 SVAVLCPYNRKE-SKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTF 406
Query: 204 YLLIQKARPSDNGKYQC 220
+++ + D G Y C
Sbjct: 407 TVILNQLTSRDAGFYWC 423
Score = 62.7 bits (151), Expect = 1e-11
Identities = 35/198 (17%), Positives = 64/198 (32%), Gaps = 20/198 (10%)
Query: 43 PQHKDTGIYECQVSFVRHRDIHLL--TTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHK 100
+ + Y C ++ LL + G + R ++ P + +T+ L +
Sbjct: 357 RKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSR 416
Query: 101 DTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLT 160
D G Y C + + + + E E ++ V G T+ +
Sbjct: 417 DAGFYWCLTNGDTLWRTTVEIK-------------IIEGEPNLKVPGNVTAVLGETLKVP 463
Query: 161 CVV--RFSPEPPAYIFWNHN--EAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNG 216
C +FS + WN+ +A+ S D V ++ VS L + +D G
Sbjct: 464 CHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVS-LTLNLVTRADEG 522
Query: 217 KYQCNPANSQAKSVMVNV 234
Y C V
Sbjct: 523 WYWCGVKQGHFYGETAAV 540
Score = 57.3 bits (137), Expect = 9e-10
Identities = 21/166 (12%), Positives = 46/166 (27%), Gaps = 9/166 (5%)
Query: 67 TTGRYTYTNDQRFRV-INNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVV 125
++G R R+ I +++ + + D G Y CQ + +
Sbjct: 161 SSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSN---KKNADL 217
Query: 126 LVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYD 185
V+ L+ + + + E + C + A
Sbjct: 218 QVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAF-- 275
Query: 186 SQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAKSVM 231
G ++ + + ++I R D G+Y C +
Sbjct: 276 ---EGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEG 318
Score = 56.9 bits (136), Expect = 1e-09
Identities = 29/206 (14%), Positives = 65/206 (31%), Gaps = 24/206 (11%)
Query: 43 PQHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDT 102
++ T Y C+ + + G + R + N P + + + + D+
Sbjct: 28 SVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDS 87
Query: 103 GIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCV 162
G Y+C + + L V + + ++ G T+ + C
Sbjct: 88 GRYKCGLGINSRGLSFDV------------SLEVSQGPGLLNDTKVYTVDLGRTVTINCP 135
Query: 163 VRFSPEPPAYIFWNHNEAI---------ISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
+ + + G + + + + ++I + R S
Sbjct: 136 FKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLS 195
Query: 214 DNGKYQC---NPANSQAKSVMVNVLN 236
D G+Y C + +NS K+ + VL
Sbjct: 196 DAGQYLCQAGDDSNSNKKNADLQVLK 221
Score = 38.4 bits (88), Expect = 0.001
Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 1/99 (1%)
Query: 13 TTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRHRDIHLLTTGRYT 72
+ G + R ++ P + +T+ L +D G Y C + +
Sbjct: 383 SEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEG 442
Query: 73 YTNDQRFRVINNPTSDDWTLQLKYPQ-HKDTGIYECQVS 110
N + + + + +P Y C+ +
Sbjct: 443 EPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWN 481
Score = 28.4 bits (62), Expect = 2.4
Identities = 9/39 (23%), Positives = 12/39 (30%)
Query: 18 TYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ V + S +L L D G Y C V
Sbjct: 491 QDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVK 529
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 64.0 bits (156), Expect = 2e-12
Identities = 37/261 (14%), Positives = 76/261 (29%), Gaps = 71/261 (27%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS--------------------FVR 59
+++ + TL + D G Y C S +
Sbjct: 47 RPGGNYKMTLVE--NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKK 104
Query: 60 HRDIHLLTTGRYTY----------------------TNDQRFRVINNPTSDDWTLQLKYP 97
++ +T +FR+ L++
Sbjct: 105 LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVE--SVAVLEMYNL 162
Query: 98 QHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPE-VFIENGST 156
+D+G Y C+ A + L V EP P V G+
Sbjct: 163 SVEDSGDYTCEAHNA---AGSASSST---------SLKVKEP-PVFRKKPHPVETLKGAD 209
Query: 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNG 216
++L C ++ +P + W+ ++ + ++ +++E T+ + I +D G
Sbjct: 210 VHLECELQGTPPF--QVSWHKDKRELR-SGKK--YKIMSENFLTS---IHILNVDSADIG 261
Query: 217 KYQC---NPANSQAKSVMVNV 234
+YQC N S + +
Sbjct: 262 EYQCKASNDVGSYTCVGSITL 282
Score = 60.9 bits (148), Expect = 3e-11
Identities = 30/168 (17%), Positives = 50/168 (29%), Gaps = 30/168 (17%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVVVLVINDGK 132
+++ + TL + D G Y C S + L V
Sbjct: 47 RPGGNYKMTLVE--NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP------ 98
Query: 133 YLLVPEPETDIIGGPE--VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGG 190
P I E ++ C + SPE + W +E I +S +
Sbjct: 99 ------PR--FIKKLEPSRIVKQDEHTRYECKIGGSPEI--KVLWYKDETEIQ-ESSKFR 147
Query: 191 VNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
++ + L + D+G Y C N A S + S + V
Sbjct: 148 MSFVESVAV-----LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK 190
Score = 47.8 bits (114), Expect = 9e-07
Identities = 21/97 (21%), Positives = 30/97 (30%), Gaps = 12/97 (12%)
Query: 143 IIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETT 201
P V + G + C V + I W + I G +T T
Sbjct: 8 FDLKPVSVDLALGESGTFKCHVTGTAPI--KITWAKDNREIRPG----GNYKMTLVENTA 61
Query: 202 VSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
L + K D G+Y C N A + S + V
Sbjct: 62 T--LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 96
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 62.9 bits (153), Expect = 2e-12
Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 25/166 (15%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVVVLVINDGK 132
++++ + + L ++ + D G Y C+ + + +L V V
Sbjct: 46 EENEKYILKG----SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ------ 95
Query: 133 YLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHN-EAIISYDSQRGGV 191
P II + L C P P I W + + +
Sbjct: 96 ------PH--IIQLKNETTYENGQVTLVCDAEGEPIP--EITWKRAVDGFTFTEGDKSLD 145
Query: 192 NVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
I KG+ S L I+ + SD+G+Y C + KS+ +++
Sbjct: 146 GRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
Score = 47.5 bits (113), Expect = 5e-07
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 13/85 (15%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
G + +C SPEP I W N +I + + ++ L ++ S
Sbjct: 19 GEEMTFSCRASGSPEP--AISWFRNGKLIEENEKY----ILKGSNTE----LTVRNIINS 68
Query: 214 DNGKYQC---NPANSQAKSVMVNVL 235
D G Y C N A K + V
Sbjct: 69 DGGPYVCRATNKAGEDEKQAFLQVF 93
Score = 27.5 bits (61), Expect = 3.2
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 1 VSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+++ R D T G R+ +L +K + D+G Y+C+ +
Sbjct: 126 ITWKRAVDGFTFTEGD----KSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAA 177
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 63.2 bits (153), Expect = 2e-12
Identities = 29/157 (18%), Positives = 49/157 (31%), Gaps = 26/157 (16%)
Query: 83 NNPTSDDWTLQLKYPQHKDTGIYECQVSTTP-HQAHYIYLTVVVLVINDGKYLLVPEPET 141
N+ S D ++ + Q D G Y+C+V P LTV+V +
Sbjct: 77 NDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK----PSGTRCFVDGS 132
Query: 142 DIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETT 201
E G+ L C + P W + + E T
Sbjct: 133 ---------EEIGNDFKLKCEPKEGS-LPLQFEWQKLSDSQTMPTPW--------LAEMT 174
Query: 202 VSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
+ ++ A +G Y C N S + ++V+
Sbjct: 175 SPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV 211
Score = 44.7 bits (105), Expect = 6e-06
Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 23/105 (21%)
Query: 154 GSTINLTCVVRFSPEP--PAYIFW--------NHNEAIISYDSQ----------RGGVNV 193
G T L C SPE P I W ++ II Y +G V+
Sbjct: 15 GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHF 74
Query: 194 ITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
+ ++ + + + + SD G YQC K ++ VL
Sbjct: 75 TSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL 119
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 62.9 bits (153), Expect = 3e-12
Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 15/154 (9%)
Query: 75 NDQRFRVINNPTSDDWTLQL-KYPQHKDTGIYECQVSTTPHQA-HYIYLTVVVLVINDGK 132
++QRF VI L++ +D IYEC S + LTV+
Sbjct: 48 SNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLRED----- 102
Query: 133 YLLVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGV 191
+P I GP+ +E T + C +P+P I W + + + G +
Sbjct: 103 --QIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDTSNNNGRI 158
Query: 192 NVITEKGETTVSYLLIQKARPSDNGKYQCNPANS 225
+ + L I+++ SD GKY+C NS
Sbjct: 159 KQLRSESIGA---LQIEQSEESDQGKYECVATNS 189
Score = 44.8 bits (106), Expect = 6e-06
Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 11/86 (12%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKAR-P 212
G + C P P I WN +S + E + + S L IQ R P
Sbjct: 21 GGVASFICQATGDPRP--KIVWNKKGKKVSNQRFE-----VIEFDDGSGSVLRIQPLRTP 73
Query: 213 SDNGKYQC---NPANSQAKSVMVNVL 235
D Y+C N + S + VL
Sbjct: 74 RDEAIYECVASNNVGEISVSTRLTVL 99
Score = 26.7 bits (59), Expect = 6.7
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
T++ R+ + LQ++ + D G YEC +
Sbjct: 151 TSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVAT 187
Score = 26.7 bits (59), Expect = 6.7
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 110
T++ R+ + LQ++ + D G YEC +
Sbjct: 151 TSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVAT 187
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 63.8 bits (155), Expect = 3e-12
Identities = 30/185 (16%), Positives = 53/185 (28%), Gaps = 28/185 (15%)
Query: 54 QVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTP 113
VS VR R L+ Y+++ + + + Y+C
Sbjct: 121 GVSLVRVRGRPLMRHTNYSFSPWH-------------GFTIHRAKFIQSQDYQCSALMGG 167
Query: 114 HQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYI 173
+ I + + V + G L P E+ G + C S + +
Sbjct: 168 RKVMSISIRLKVQKVIPGPPALTLVPA-------ELVRIRGEAAQIVCSA-SSVDVNFDV 219
Query: 174 FWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSV 230
F HN ++ Q V L + + G Y C N + S+
Sbjct: 220 FLQHNNTKLAIPQQS----DFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSM 275
Query: 231 MVNVL 235
V+
Sbjct: 276 FFRVV 280
Score = 62.7 bits (152), Expect = 7e-12
Identities = 23/173 (13%), Positives = 39/173 (22%), Gaps = 26/173 (15%)
Query: 68 TGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVVVL 126
G + L ++TG Y C P I+L V
Sbjct: 29 NGSVEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDP 88
Query: 127 VINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDS 186
+ EV + L C++ P A +
Sbjct: 89 ------------ARPWNVLAQEVVVFEDQDALLPCLL-TDPVLEAGVSLVRVRGRPLMRH 135
Query: 187 QRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC----NPANSQAKSVMVNVL 235
+ I +A+ + YQC + S+ + V
Sbjct: 136 TNY---SFSPWHG-----FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQ 180
Score = 40.7 bits (95), Expect = 2e-04
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 20/92 (21%)
Query: 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYL 205
PE+ ++ G+T+ L CV + W+ + T + + S L
Sbjct: 11 VPELVVKPGATVTLRCVG------NGSVEWDGPPSPH-----------WTLYSDGSSSIL 53
Query: 206 LIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
A + G Y+C + ++ + V
Sbjct: 54 STNNATFQNTGTYRCTEPGDPLGGSAAIHLYV 85
Score = 28.0 bits (62), Expect = 2.4
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
Q+ NN TL L + G Y C S
Sbjct: 229 AIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVAS 265
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 64.1 bits (156), Expect = 3e-12
Identities = 33/167 (19%), Positives = 50/167 (29%), Gaps = 27/167 (16%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVST--TPHQAHYIYLTVVVLVINDG 131
D R V LQ+ Q D+G+Y C + + + ++
Sbjct: 166 PGDSRVVV-----LPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHR 220
Query: 132 KYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGV 191
+ + P V G L C V P P W E +I S++
Sbjct: 221 QLYFLQRPSN-------VIAIEGKDAVLECCVSGYPPP--SFTWLRGEEVIQLRSKK--- 268
Query: 192 NVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAK---SVMVNVL 235
+ G + LLI D+G Y C S + VL
Sbjct: 269 --YSLLGGSN---LLISNVTDDDSGTYTCVVTYKNENISASAELTVL 310
Score = 57.9 bits (140), Expect = 4e-10
Identities = 50/261 (19%), Positives = 72/261 (27%), Gaps = 73/261 (27%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRF 79
D R V LQ+ Q D+G+Y C N+
Sbjct: 166 PGDSRVVV-----LPSGALQISRLQPGDSGVYRCSAR----------NPASTRTGNEAEV 210
Query: 80 RVINNPTSDDWTLQLKYPQHK-----DTGIYECQVSTTP---------------HQAHYI 119
R++++P L+ P + + EC VS P Y
Sbjct: 211 RILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYS 270
Query: 120 YLTVVVLVIND------GKY----------------LLVPEPETDIIGGPE-VFIENGST 156
L L+I++ G Y L V P + P ++
Sbjct: 271 LLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVP-PWFLNHPSNLYAYESMD 329
Query: 157 INLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNG 216
I C V P P + W N ++ I L I SD G
Sbjct: 330 IEFECAVSGKPVPT--VNWMKNGDVVIPSDYF----QIVGGSN-----LRILGVVKSDEG 378
Query: 217 KYQC---NPANSQAKSVMVNV 234
YQC N A + S + V
Sbjct: 379 FYQCVAENEAGNAQSSAQLIV 399
Score = 57.2 bits (138), Expect = 9e-10
Identities = 35/169 (20%), Positives = 57/169 (33%), Gaps = 28/169 (16%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA---HYIYLTVVVLVIND 130
D R + + N + + D G+Y+C+ S + + V
Sbjct: 66 GMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGP---- 121
Query: 131 GKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGG 190
++L E T G T+ L C V P P I W N+ ++
Sbjct: 122 LRFLSQTESIT---------AFMGDTVLLKCEVIGDPMP--TIHWQKNQQDLNPIPGDSR 170
Query: 191 VNVITEKGETTVSYLLIQKARPSDNGKYQCNPANS----QAKSVMVNVL 235
V V+ G L I + +P D+G Y+C+ N V +L
Sbjct: 171 V-VVLPSGA-----LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRIL 213
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 60.4 bits (146), Expect = 4e-12
Identities = 6/72 (8%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 54 QVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTP 113
+ ++ + Y + +++++++ +++ ++ + +D G+Y+C +
Sbjct: 32 SLQWLTPSG-FTIFLNEYPVLKNSKYQLLHH-SANQLSITVPNVTLQDEGVYKCLHYSDS 89
Query: 114 HQAHYIYLTVVV 125
+ + V+
Sbjct: 90 VSTKEVKVIVLA 101
Score = 46.5 bits (110), Expect = 4e-07
Identities = 5/51 (9%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 6 HRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ Y + +++++++ +++ ++ + +D G+Y+C
Sbjct: 37 TPSGFTIFLNEYPVLKNSKYQLLHH-SANQLSITVPNVTLQDEGVYKCLHY 86
Score = 38.1 bits (88), Expect = 5e-04
Identities = 17/87 (19%), Positives = 25/87 (28%), Gaps = 7/87 (8%)
Query: 154 GSTINLTCVVRFSPEPPAYIFW-NHNEAIISYDSQRGGVN--VITEKGETTVSYLLIQKA 210
G T+ L CV + W + I + N + +
Sbjct: 16 GQTLTLKCVTSLRKNSS--LQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNV 73
Query: 211 RPSDNGKYQC--NPANSQAKSVMVNVL 235
D G Y+C + K V V VL
Sbjct: 74 TLQDEGVYKCLHYSDSVSTKEVKVIVL 100
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 62.3 bits (151), Expect = 4e-12
Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 17/159 (10%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKY 133
++++ + + + ++ Q +D G Y Q+ H + V + K
Sbjct: 45 FEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKE 104
Query: 134 LLVPEPETDIIGGPEVFIEN-------GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDS 186
E GP F+E + L C V +I W +E IS D
Sbjct: 105 AEFQRQEWIRKQGPH-FVEYLSWEVTGECNVLLKCKVANIK-KETHIVWYKDEREISVDE 162
Query: 187 QRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANS 225
+ + + LLI + D G Y+ +
Sbjct: 163 KH--------DFKDGICTLLITEFSKKDAGIYEVILKDD 193
Score = 50.3 bits (120), Expect = 7e-08
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
+E G + S + + NE I + + T + + ++K
Sbjct: 15 LEKGQVRFWMQAEKLSGNAK--VNYIFNEKEIFEGPKY----KMHIDRNTGIIEMFMEKL 68
Query: 211 RPSDNGKYQCNPANSQAKS 229
+ D G Y + +A +
Sbjct: 69 QDEDEGTYTFQLQDGKATN 87
Score = 27.2 bits (60), Expect = 3.6
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 30 NPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ TL + KD GIYE +
Sbjct: 165 DFKDGICTLLITEFSKKDAGIYEVILK 191
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 61.7 bits (150), Expect = 5e-12
Identities = 34/166 (20%), Positives = 57/166 (34%), Gaps = 32/166 (19%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKY 133
D R+ + + L + + D GIY C + + L +
Sbjct: 50 LFDTRYSI----RENGQLLTILSVEDSDDGIYCCTANN---GVGGAVESCGALQV----- 97
Query: 134 LLVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVN 192
+ P I P V I G L C +P+P + W ++ + +S+
Sbjct: 98 -KMK-P--KITRPPINVKIIEGLKAVLPCTTMGNPKPS--VSWIKGDSALRENSRI---- 147
Query: 193 VITEKGETTVSYLLIQKARPSDNGKYQCNPANS----QAKSVMVNV 234
+ E G L I + D G+Y+C NS +K V + V
Sbjct: 148 AVLESGS-----LRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188
Score = 47.4 bits (113), Expect = 7e-07
Identities = 25/104 (24%), Positives = 33/104 (31%), Gaps = 14/104 (13%)
Query: 136 VPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVI 194
+P+ I E V C V P+P I W N+ +I R I
Sbjct: 4 LPKAPV-ITTPLETVDALVEEVATFMCAVESYPQP--EISWTRNKILIKLFDTR---YSI 57
Query: 195 TEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
E G L I SD+G Y C N +S +
Sbjct: 58 RENG----QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQV 97
Score = 27.0 bits (60), Expect = 4.3
Identities = 21/151 (13%), Positives = 40/151 (26%), Gaps = 53/151 (35%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS--------------------FVR 59
D R+ + + L + + D GIY C + R
Sbjct: 50 LFDTRYSI----RENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITR 105
Query: 60 H-RDIHLLTTGRYT---------------YTNDQ------RFRVINNPTSDDWTLQLKYP 97
++ ++ + D R V + +L++
Sbjct: 106 PPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAV-----LESGSLRIHNV 160
Query: 98 QHKDTGIYECQVSTTP--HQAHYIYLTVVVL 126
Q +D G Y C + + + L V V
Sbjct: 161 QKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF 191
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 62.1 bits (151), Expect = 5e-12
Identities = 39/168 (23%), Positives = 60/168 (35%), Gaps = 23/168 (13%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKY 133
R+ V+ P +D YEC A T+ + +
Sbjct: 49 GTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDK--- 105
Query: 134 LLVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVN 192
P I GP IE G T+ +TC +P P I+W N+ + + R
Sbjct: 106 --TPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTP--NIYWIKNQTKVDMSNPR---- 157
Query: 193 VITEKGETTVSYLLIQKARPSDNGKYQC---NPA---NSQAKSVMVNV 234
+ G L I+ +R D GKY+C N +S+A ++ V V
Sbjct: 158 YSLKDGF-----LQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV 200
Score = 39.4 bits (92), Expect = 4e-04
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 143 IIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETT 201
II P+ + G + C R P P I W N +S R V+ + G +
Sbjct: 9 IIRKPQNQGVRVGGVASFYCAARGDPPP--SIVWRKNGKKVSGTQSR--YTVLEQPGGIS 64
Query: 202 VSYLLIQKAR-PSDNGKYQCNPANSQAKSVMVNV 234
+ L I+ R D+ Y+C N +V +
Sbjct: 65 I--LRIEPVRAGRDDAPYECVAENGVGDAVSADA 96
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 61.8 bits (150), Expect = 6e-12
Identities = 31/164 (18%), Positives = 53/164 (32%), Gaps = 22/164 (13%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKY 133
+ +RF N L + + D G Y C VS+ + ++ I +
Sbjct: 55 MDKRRFVSQTNGN-----LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPER-- 107
Query: 134 LLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNV 193
P P ++ +V+ G + L C +P P I W + ++
Sbjct: 108 TTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVP--DIRWRKVLEPMPSTAE------ 159
Query: 194 ITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
I+ G L I + D G Y+C N + V
Sbjct: 160 ISTSGAV----LKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 51.0 bits (122), Expect = 4e-08
Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 9/92 (9%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLL 206
PEV ++ G + L C + W NE + + + V G L
Sbjct: 16 PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPV-FITMDKRRFVSQTNGN-----LY 69
Query: 207 IQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
I SD G Y C +P+ +++ L
Sbjct: 70 IANVEASDKGNYSCFVSSPSITKSVFSKFIPL 101
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 62.3 bits (151), Expect = 6e-12
Identities = 32/172 (18%), Positives = 50/172 (29%), Gaps = 21/172 (12%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKY 133
+ R I W+L ++ D G Y C V + I T + V+
Sbjct: 57 RGEHRIGGIKL-RHQQWSLVMESVVPSDRGNYTCVVEN---KFGSIRQTYTLDVLE---- 108
Query: 134 LLVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVN 192
P G P GS + C V +P +I W + + G
Sbjct: 109 -RSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP--HIQWLKHVEVNGSKVGPDGTP 165
Query: 193 VITEKGETTV------SYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
+T L + D G+Y C N K+ ++V
Sbjct: 166 YVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVH 217
Score = 54.6 bits (131), Expect = 3e-09
Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 22/113 (19%)
Query: 138 EPETDIIGGPEVFIEN------------GSTINLTCVVRFSPEPPAYIFWNHNEAIISYD 185
+P+T + G + +T+ C +P P I W N +
Sbjct: 2 DPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTP--SISWLKNGREFRGE 59
Query: 186 SQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
+ GG+ + ++ L+++ PSD G Y C N S ++ ++VL
Sbjct: 60 HRIGGIKLRHQQWS-----LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL 107
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 63.3 bits (153), Expect = 6e-12
Identities = 16/156 (10%), Positives = 39/156 (25%), Gaps = 41/156 (26%)
Query: 82 INNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPET 141
+ ++ L +K + +D+ Y C+V + + +
Sbjct: 59 RSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA---------------- 102
Query: 142 DIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETT 201
+ + G ++ LT P + + I
Sbjct: 103 ----NSDTHLLQGQSLTLTLES--PPGSSPSVQC-----------RSPRGKNIQGGKT-- 143
Query: 202 VSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
L + + D+G + C + + V
Sbjct: 144 ---LSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 176
Score = 55.2 bits (132), Expect = 3e-09
Identities = 29/241 (12%), Positives = 67/241 (27%), Gaps = 40/241 (16%)
Query: 28 INNPTSDDWTLQLKYPQHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRV------ 81
+ ++ L +K + +D+ Y C+V + L T +D
Sbjct: 59 RSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEE--VQLLVFGLTANSDTHLLQGQSLTL 116
Query: 82 -----------------INNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVV 124
TL + + +D+G + C V + +
Sbjct: 117 TLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVL---QNQKKVEFKID 173
Query: 125 VLVINDGK---YLLVPEPETDIIGGPEVF----IENGSTINLTCVVRFSPEPPAYIFWNH 177
++V+ K + E E P F + + S + +
Sbjct: 174 IVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKN 233
Query: 178 NEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
E + +Q + + +K ++ L + + +G + V + V
Sbjct: 234 KEVSVKRVTQDPKLQ-MGKKLPLHLT-LPQALPQYAGSGNLTLALEAKTGKLHQEVNLVV 291
Query: 235 L 235
+
Sbjct: 292 M 292
Score = 44.8 bits (105), Expect = 1e-05
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRG----GVNVITEKGETTVSY----- 204
G T+ LTC S + W ++ I +Q G + + ++ ++ S
Sbjct: 9 GDTVELTCTA--SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 205 --LLIQKARPSDNGKYQCNPANSQAKSVMVNVLN 236
L+I+ + D+ Y C Q + V + V
Sbjct: 67 FPLIIKNLKIEDSDTYICE-VEDQKEEVQLLVFG 99
Score = 40.2 bits (93), Expect = 3e-04
Identities = 21/161 (13%), Positives = 37/161 (22%), Gaps = 43/161 (26%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKY 133
T D + ++ TL PQ+ +G + + H VV+
Sbjct: 242 TQDPKLQMGKKLPLHL-TLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRA------ 294
Query: 134 LLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNV 193
NLTC V P + +
Sbjct: 295 -------------------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKR------ 329
Query: 194 ITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAKSVMVNV 234
+ G +QC ++S + N+
Sbjct: 330 -----------EKAVWVLNPEAGMWQCLLSDSGQVLLESNI 359
Score = 30.1 bits (67), Expect = 0.64
Identities = 16/126 (12%), Positives = 42/126 (33%), Gaps = 22/126 (17%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVR---HRDIHLL---------- 66
T D + ++ TL PQ+ +G + H++++L+
Sbjct: 242 TQDPKLQMGKKLPLHL-TLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKN 300
Query: 67 ----TTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLT 122
G + ++ N + + + + G+++C +S + + L
Sbjct: 301 LTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPEAGMWQCLLS----DSGQVLLE 356
Query: 123 VVVLVI 128
+ V+
Sbjct: 357 SNIKVL 362
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 63.0 bits (153), Expect = 7e-12
Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 30/166 (18%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTT--PHQAHYIYLTVVVLVINDG 131
+ R+ + + L K +D G+Y C+V Q H + LTVV
Sbjct: 254 NGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSA----- 308
Query: 132 KYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGV 191
P+ + + ++ G + + C V P P + W+HN +S
Sbjct: 309 -------PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPN--VVWSHNAKPLSGGRAT--- 356
Query: 192 NVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
+T+ G L+I+ + D G Y C N + +V V
Sbjct: 357 --VTDSG------LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 60.7 bits (147), Expect = 5e-11
Identities = 25/180 (13%), Positives = 51/180 (28%), Gaps = 15/180 (8%)
Query: 61 RDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIY 120
+ + D+R P + + + D Y C +
Sbjct: 137 KRLSGADPNADVTDFDRRITA--GPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVL 194
Query: 121 LTVVVLVINDGKYLLVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNE 179
+ + + EP + + + G + C+ +P Y + N
Sbjct: 195 VEYEIKGVTKDNSGYKGEPV--PQYVSKDMMAKAGDVTMIYCMYGSNPMG--YPNYFKNG 250
Query: 180 AIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANS----QAKSVMVNVL 235
++ + + G+ LL + P D G Y C N Q S+ + V+
Sbjct: 251 KDVNGNPEDRITRHNRTSGKR----LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 306
Score = 48.8 bits (116), Expect = 5e-07
Identities = 27/138 (19%), Positives = 42/138 (30%), Gaps = 17/138 (12%)
Query: 91 TLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVF 150
+L PQ D G Y+C T A ++ + +T I G P
Sbjct: 63 SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIA--SPAKTHEKTPIEGRPFQ- 119
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVN---VITEKGETTVSYLLI 207
L CV+ + P I W + ++ + G + +
Sbjct: 120 --------LDCVLPNAY-PKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTI--V 168
Query: 208 QKARPSDNGKYQCNPANS 225
K SD KY C N+
Sbjct: 169 TKEDVSDIYKYVCTAKNA 186
Score = 43.0 bits (101), Expect = 4e-05
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLL 206
EV + L C++ + + Y W + ++ N K E + L+
Sbjct: 14 AEVLFRENNPTVLECIIEGNDQGVKYS-WKKDGKSYNWQEH----NAALRKDEGS---LV 65
Query: 207 IQKARPSDNGKYQCNPANS--QAKSVMVNV 234
+ + SD G YQC A S +++
Sbjct: 66 FLRPQASDEGHYQCFAETPAGVASSRVISF 95
Score = 28.0 bits (62), Expect = 3.3
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ R+ + + L K +D G+Y C+V
Sbjct: 254 NGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVD 290
Score = 26.4 bits (58), Expect = 8.9
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 21 NDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ R V ++ L +K ++ D G Y C+ +
Sbjct: 351 SGGRATVTDS------GLVIKGVKNGDKGYYGCRAT 380
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 61.4 bits (149), Expect = 8e-12
Identities = 35/167 (20%), Positives = 51/167 (30%), Gaps = 28/167 (16%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKY 133
N QR V+ N D TL + D GIY+C V+ + V +
Sbjct: 47 PNQQRISVVWN-DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK----- 100
Query: 134 LLVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHN-EAIISYDSQRGGV 191
P + G + C V S P I W H +I R
Sbjct: 101 -------LMFKNAPTPQEFKEGEDAVIVCDVVSSLPP--TIIWKHKGRDVILKKDVR--- 148
Query: 192 NVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
I L I+ + +D G Y+C A + + V+
Sbjct: 149 -FIVLSNNY----LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 44.8 bits (106), Expect = 5e-06
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 6/82 (7%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNH-NEAIISYDSQRGGVNVITEKGETTVSYLLIQKARP 212
G + C V + I W N +S + QR ++V+ ++ S L I A
Sbjct: 17 GESKFFLCQVAGDAKDK-DISWFSPNGEKLSPNQQR--ISVVWNDDDS--STLTIYNANI 71
Query: 213 SDNGKYQCNPANSQAKSVMVNV 234
D G Y+C V
Sbjct: 72 DDAGIYKCVVTAEDGTQSEATV 93
Score = 27.5 bits (61), Expect = 2.7
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
N QR V+ N D TL + D GIY+C V+
Sbjct: 47 PNQQRISVVWN-DDDSSTLTIYNANIDDAGIYKCVVT 82
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 61.6 bits (149), Expect = 8e-12
Identities = 31/194 (15%), Positives = 55/194 (28%), Gaps = 28/194 (14%)
Query: 44 QHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTG 103
+ +D I + + H R DQ + + LQ+ + +D G
Sbjct: 41 EMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQ-------LSLGNAALQITDVKLQDAG 93
Query: 104 IYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVV 163
+Y C +S I + V P I V S LTC
Sbjct: 94 VYRCMISYGGADYKRITVKVN-------------APYNKINQRILVVDPVTSEHELTCQA 140
Query: 164 RFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC--- 220
P+ + W ++ + + EK S L I + N + C
Sbjct: 141 EGYPKA--EVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRI---NTTTNEIFYCTFR 195
Query: 221 NPANSQAKSVMVNV 234
+ + + +
Sbjct: 196 RLDPEENHTAELVI 209
Score = 29.2 bits (65), Expect = 0.94
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 27 VINNPTSDDWTLQLKYPQHKDTGIYECQVSF 57
+ + + + LQ+ + +D G+Y C +S+
Sbjct: 71 LKDQLSLGNAALQITDVKLQDAGVYRCMISY 101
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 62.2 bits (151), Expect = 9e-12
Identities = 24/147 (16%), Positives = 38/147 (25%), Gaps = 33/147 (22%)
Query: 91 TLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVF 150
+ ++ D+G Y CQ + + + + L V VF
Sbjct: 49 SYRITSASVNDSGEYRCQRGLSGRSD-----PIQLEIHRGWLLLQVS---------SRVF 94
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
E G + L C + + N + L I K
Sbjct: 95 TE-GEPLALRCHAWKDK-LVYNVLYYRNGKAFKFFHWNSN--------------LTILKT 138
Query: 211 RPSDNGKYQC---NPANSQAKSVMVNV 234
S NG Y C + + V V
Sbjct: 139 NISHNGTYHCSGMGKHRYTSAGISVTV 165
Score = 58.0 bits (140), Expect = 2e-10
Identities = 36/232 (15%), Positives = 64/232 (27%), Gaps = 56/232 (24%)
Query: 37 TLQLKYPQHKDTGIYECQ---------VSFVRHRDIHLLTTGRYTYTNDQRF----RVIN 83
+ ++ D+G Y CQ + HR LL +T +
Sbjct: 49 SYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWK 108
Query: 84 NPT----------------SDDWTLQLKYPQHKDTGIYECQVS-TTPHQAHYIYLTVVVL 126
+ + L + G Y C + + I +TV L
Sbjct: 109 DKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKEL 168
Query: 127 VINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDS 186
P + + G+ + L+C + + P + +
Sbjct: 169 F-----------PAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLY--------FSF 209
Query: 187 QRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPA-NSQAKSVMVNV 234
G + +G T S I AR D+G Y C N +S + +
Sbjct: 210 YMGSKTL---RGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELEL 258
Score = 43.4 bits (102), Expect = 2e-05
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 18/90 (20%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLL 206
P V + T+ L C V P + W N +
Sbjct: 9 PWVSVFQEETVTLHCEVLHLPGSSSTQ-WFLNGTATQTSTPS----------------YR 51
Query: 207 IQKARPSDNGKYQCNPANS-QAKSVMVNVL 235
I A +D+G+Y+C S ++ + + +
Sbjct: 52 ITSASVNDSGEYRCQRGLSGRSDPIQLEIH 81
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 61.2 bits (148), Expect = 1e-11
Identities = 22/182 (12%), Positives = 55/182 (30%), Gaps = 23/182 (12%)
Query: 56 SFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQ 115
F + + + R + + D +L++ + +D G Y C T P
Sbjct: 49 VFHQTQGPSYSESKRLEFVAARL-----GAELRDASLRMFGLRVEDEGSYTCLFVTFPQG 103
Query: 116 AHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFW 175
+ + + + VL + +V + CV P +
Sbjct: 104 SRSVDIWLRVLA-----------KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWH 152
Query: 176 NHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMV 232
+ + G ++ T S ++ + D + C + + + + + V
Sbjct: 153 SDLGGMPQTSQVPGFLS----GTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTV 208
Query: 233 NV 234
++
Sbjct: 209 SL 210
Score = 35.1 bits (80), Expect = 0.010
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 19/101 (18%)
Query: 154 GSTINLTCVVRFSPEPPAY---IFW---NHNEAIISYDSQ---------RGGVNVITEKG 198
G ++ L C ++ + + W + ++ + R
Sbjct: 14 GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 73
Query: 199 ETTVSYLLIQKARPSDNGKYQC----NPANSQAKSVMVNVL 235
E + L + R D G Y C P S++ + + VL
Sbjct: 74 ELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVL 114
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 62.7 bits (152), Expect = 1e-11
Identities = 32/176 (18%), Positives = 63/176 (35%), Gaps = 27/176 (15%)
Query: 64 HLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTV 123
+++ T + T R I P + +L ++ DTG Y V +
Sbjct: 48 YVIGTQQATPGPAYSGREIIYPNA---SLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQF 104
Query: 124 VVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIIS 183
V P+ I +E+ + TC Y++W +N+++
Sbjct: 105 RV---------YPELPKPSISSNNSKPVEDKDAVAFTCEPETQ--DATYLWWVNNQSLPV 153
Query: 184 YDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANS-QAKSVMVNVL 235
+ ++ T L + +D Y+C NP ++ ++ SV++NVL
Sbjct: 154 SPRLQ-----LSNGNRT----LTLFNVTRNDTASYKCETQNPVSARRSDSVILNVL 200
Score = 61.1 bits (148), Expect = 4e-11
Identities = 33/151 (21%), Positives = 54/151 (35%), Gaps = 32/151 (21%)
Query: 87 SDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGG 146
+ + TL L D Y C + + +T+ VL P+T II
Sbjct: 517 NGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLY----------GPDTPIISP 566
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLL 206
P+ +G+ +NL+C +P P W N + L
Sbjct: 567 PDSSYLSGANLNLSCHSASNPSP--QYSWRINGIPQQHTQ-----------------VLF 607
Query: 207 IQKARPSDNGKYQC---NPANSQAKSVMVNV 234
I K P++NG Y C N A + S++ ++
Sbjct: 608 IAKITPNNNGTYACFVSNLATGRNNSIVKSI 638
Score = 60.0 bits (145), Expect = 1e-10
Identities = 29/152 (19%), Positives = 51/152 (33%), Gaps = 32/152 (21%)
Query: 87 SDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGG 146
+D+ TL L D G YEC + H + + VL P+ I
Sbjct: 339 NDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLY----------GPDDPTISP 388
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLL 206
+ G ++L+C + PPA W + I + + L
Sbjct: 389 SYTYYRPGVNLSLSCHA--ASNPPAQYSWLIDGNIQQHTQE-----------------LF 429
Query: 207 IQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
I ++G Y C N A+ +++ + +
Sbjct: 430 ISNITEKNSGLYTCQANNSASGHSRTTVKTIT 461
Score = 57.7 bits (139), Expect = 7e-10
Identities = 44/267 (16%), Positives = 76/267 (28%), Gaps = 74/267 (27%)
Query: 10 HLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSF------------ 57
+++ T + T R I P + +L ++ DTG Y V
Sbjct: 48 YVIGTQQATPGPAYSGREIIYPNA---SLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQF 104
Query: 58 ------------------VRHRDIHLLT---TGR----YTYTNDQRFRVINNPT--SDDW 90
V +D T + + N+Q V + +
Sbjct: 105 RVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNR 164
Query: 91 TLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVF 150
TL L DT Y+C+ + V+L + G P+ I
Sbjct: 165 TLTLFNVTRNDTASYKCETQ---NPVSARRSDSVILNVLYG-------PDAPTISPLNTS 214
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
+G +NL+C + PPA W N + L I
Sbjct: 215 YRSGENLNLSCHA--ASNPPAQYSWFVNGTFQQSTQE-----------------LFIPNI 255
Query: 211 RPSDNGKYQC---NPANSQAKSVMVNV 234
+++G Y C N ++ + +
Sbjct: 256 TVNNSGSYTCQAHNSDTGLNRTTVTTI 282
Score = 56.1 bits (135), Expect = 2e-09
Identities = 36/237 (15%), Positives = 62/237 (26%), Gaps = 53/237 (22%)
Query: 33 SDDWTLQLKYPQHKDTGIYECQVS----FVRHRDIHLLTTGR----------YTYTNDQR 78
+D+ TL L D G YEC + + L Y
Sbjct: 339 NDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVN 398
Query: 79 FRVI----------------NNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLT 122
+ N L + K++G+Y CQ + A T
Sbjct: 399 LSLSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEKNSGLYTCQANN---SASGHSRT 455
Query: 123 VVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAII 182
V + + P+ I +E+ + TC W N +
Sbjct: 456 TVKTIT-----VSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT---YLWWVNGQSL 507
Query: 183 SYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPA-NSQAKSVMVNVL 235
+ + L + +D Y C N +++ V ++VL
Sbjct: 508 PVSPRL---QLSNGNR-----TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVL 556
Score = 53.4 bits (128), Expect = 2e-08
Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 29/152 (19%)
Query: 91 TLQLKYPQHKDTGIYECQVS---TTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGP 147
L + ++G Y CQ T ++ +TV P+ I
Sbjct: 249 ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITV-----------YAEPPKPFITSNN 297
Query: 148 EVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLI 207
+E+ + LTC + Y++W +N+++ + ++ T L +
Sbjct: 298 SNPVEDEDAVALTCEP--EIQNTTYLWWVNNQSLPVSPRLQ-----LSNDNRT----LTL 346
Query: 208 QKARPSDNGKYQC---NPA-NSQAKSVMVNVL 235
+D G Y+C N + V++NVL
Sbjct: 347 LSVTRNDVGPYECGIQNELSVDHSDPVILNVL 378
Score = 40.3 bits (94), Expect = 3e-04
Identities = 17/91 (18%), Positives = 24/91 (26%), Gaps = 12/91 (13%)
Query: 154 GSTINLTCVVRFSPEPPAYIFW------NHNEAIISYDSQRGGVNVITEKGETTVSY--- 204
G + L P+ W + N II Y + Y
Sbjct: 14 GKEVLLLVHNL--PQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNA 71
Query: 205 -LLIQKARPSDNGKYQCNPANSQAKSVMVNV 234
LLIQ +D G Y + S +
Sbjct: 72 SLLIQNIIQNDTGFYTLHVIKSDLVNEEATG 102
Score = 29.2 bits (65), Expect = 1.3
Identities = 19/124 (15%), Positives = 35/124 (28%), Gaps = 31/124 (25%)
Query: 33 SDDWTLQLKYPQHKDTGIYECQVS----FVRHRDIHL----------LTTGRYTYTNDQR 78
+ + TL L D Y C + R + L ++ +Y +
Sbjct: 517 NGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGAN 576
Query: 79 F----RVINNPT------------SDDWTLQLKYPQHKDTGIYECQVSTTP-HQAHYIYL 121
+NP+ L + + G Y C VS + + I
Sbjct: 577 LNLSCHSASNPSPQYSWRINGIPQQHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVK 636
Query: 122 TVVV 125
++ V
Sbjct: 637 SITV 640
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 60.2 bits (146), Expect = 1e-11
Identities = 28/155 (18%), Positives = 45/155 (29%), Gaps = 24/155 (15%)
Query: 86 TSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIG 145
+ + ++ P+ +D+G Y C + V P+ I G
Sbjct: 52 NASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKA----------APD----ITG 97
Query: 146 GPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHN-EAIISYDSQRGGVNVITEKGETTVS 203
G + C P P W + S G I K +
Sbjct: 98 HKRSENKNEGQDAMMYCKSVGYPHPE--WMWRKKENGVFEEISNSSGRFFIINKE--NYT 153
Query: 204 YLLIQK-ARPSDNGKYQC---NPANSQAKSVMVNV 234
L I D G+Y+C N S + S ++ V
Sbjct: 154 ELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 52.5 bits (126), Expect = 8e-09
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 14/96 (14%)
Query: 143 IIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETT 201
I+ E + ++ + L C + S Y +W N ++ +
Sbjct: 6 IVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNME-------- 57
Query: 202 VSYLLIQKARPSDNGKYQC--NPANSQAKSVMVNVL 235
I K R D+G+Y C + ++ + + V
Sbjct: 58 ---YRINKPRAEDSGEYHCVYHFVSAPKANATIEVK 90
Score = 26.4 bits (58), Expect = 7.3
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 32 TSDDWTLQLKYPQHKDTGIYECQVSFV 58
+ + ++ P+ +D+G Y C FV
Sbjct: 52 NASNMEYRINKPRAEDSGEYHCVYHFV 78
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 60.7 bits (147), Expect = 2e-11
Identities = 28/158 (17%), Positives = 49/158 (31%), Gaps = 19/158 (12%)
Query: 87 SDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGG 146
+ W+L ++ D G Y C V + I T + V+ G
Sbjct: 73 NQHWSLIMESVVPSDKGNYTCVVEN---EYGSINHTYHLDVVER-----SRHRPILQAGL 124
Query: 147 PE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVS-- 203
P G + C V +P +I W + G+ + + ++
Sbjct: 125 PANASTVVGGDVEFVCKVYSDAQP--HIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSS 182
Query: 204 ---YLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
L + +D G+Y C N +S + VL
Sbjct: 183 NAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL 220
Score = 51.4 bits (123), Expect = 3e-08
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 10/85 (11%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
+T+ C +P P + W N + + GG V + L+++ PS
Sbjct: 34 ANTVKFRCPAGGNPMP--TMRWLKNGKEFKQEHRIGGYKVRNQHWS-----LIMESVVPS 86
Query: 214 DNGKYQC---NPANSQAKSVMVNVL 235
D G Y C N S + ++V+
Sbjct: 87 DKGNYTCVVENEYGSINHTYHLDVV 111
Score = 28.3 bits (63), Expect = 1.8
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 33 SDDWTLQLKYPQHKDTGIYECQVS 56
+ W+L ++ D G Y C V
Sbjct: 73 NQHWSLIMESVVPSDKGNYTCVVE 96
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 60.3 bits (146), Expect = 2e-11
Identities = 30/182 (16%), Positives = 55/182 (30%), Gaps = 35/182 (19%)
Query: 61 RDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTT--PHQAHY 118
RD +L T T + L++ Q DTG Y+C V +
Sbjct: 39 RDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQP 98
Query: 119 IYLTVVVLVINDGKYLLVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNH 177
Y+ + L P + PE + + NL+C + PE P + W
Sbjct: 99 GYVGLEGL----------PY----FLEEPEDRTVAANTPFNLSCQAQGPPE-PVDLLWLQ 143
Query: 178 NEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANS----QAKSVMVN 233
+ ++ G + + + C N+ +++ +
Sbjct: 144 DAVPLATAPGHG-------------PQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATIT 190
Query: 234 VL 235
VL
Sbjct: 191 VL 192
Score = 48.0 bits (114), Expect = 4e-07
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 9/100 (9%)
Query: 143 IIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETT 201
+G P + G T L C ++ EPP + W + I+ + E +
Sbjct: 5 FVGNPGNITGARGLTGTLRCQLQVQGEPPE-VHWLRDGQILELADSTQTQVPLGEDEQDD 63
Query: 202 V---SYLLIQKARPSDNGKYQCNPANS----QAKSVMVNV 234
S L I + SD G+YQC ++ V +
Sbjct: 64 WIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGL 103
Score = 29.1 bits (65), Expect = 0.96
Identities = 13/50 (26%), Positives = 18/50 (36%)
Query: 7 RDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
RD +L T T + L++ Q DTG Y+C V
Sbjct: 39 RDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVF 88
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 61.6 bits (149), Expect = 2e-11
Identities = 27/248 (10%), Positives = 60/248 (24%), Gaps = 51/248 (20%)
Query: 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRHRDIHLLT----TGRYTYTNDQ 77
F + N ++ + G Y + L T
Sbjct: 92 QPHFDLQNRGVV---SMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRP 148
Query: 78 RFRVINNPTSDD------------WTLQLKYP------------------QHKDTGIYEC 107
FR + N + W L C
Sbjct: 149 YFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRC 208
Query: 108 QVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSP 167
+ T+ + P+T + P++F++ G + + C
Sbjct: 209 CARNELGRECTRLFTIDL----------NQTPQTTL---PQLFLKVGEPLWIRCKAVHVN 255
Query: 168 EPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQA 227
+ W + + T + + + + +D G Y C+ + +
Sbjct: 256 -HGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS 314
Query: 228 KSVMVNVL 235
+S +V ++
Sbjct: 315 QSALVTIV 322
Score = 51.2 bits (122), Expect = 9e-08
Identities = 25/147 (17%), Positives = 37/147 (25%), Gaps = 28/147 (19%)
Query: 91 TLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVF 150
+ DTG Y C S P Q + +V ++ G E
Sbjct: 291 FAFVSSVARNDTGYYTCSSSKHPSQ------SALVTIVEKGFINATNSSED--------- 335
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
E VRF P W + Q+G N + +
Sbjct: 336 YEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFP-CEQKGLDNGYS---------ISKFCN 385
Query: 211 RPSDNGKYQC---NPANSQAKSVMVNV 234
G+Y N K +N+
Sbjct: 386 HKHQPGEYIFHAENDDAQFTKMFTLNI 412
Score = 50.8 bits (121), Expect = 1e-07
Identities = 21/145 (14%), Positives = 45/145 (31%), Gaps = 18/145 (12%)
Query: 100 KDTGIYECQVSTTPHQAHYI-----YLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENG 154
+D + +C + + + Y V + G L T + V ++
Sbjct: 5 QDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGT-VYEAAAVEVDVS 63
Query: 155 STINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSD 214
++I L +V W + ++ N V ++I K +
Sbjct: 64 ASITLQVLVDAPGNI--SCLWVFKHSSLNCQPHFDLQN-------RGVVSMVILKMTETQ 114
Query: 215 NGKYQC---NPANSQAKSVMVNVLN 236
G+Y + A + V++ N
Sbjct: 115 AGEYLLFIQSEATNYTILFTVSIRN 139
Score = 45.0 bits (106), Expect = 9e-06
Identities = 15/161 (9%), Positives = 37/161 (22%), Gaps = 28/161 (17%)
Query: 76 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLL 135
F + N ++ + G Y + + + + I +
Sbjct: 92 QPHFDLQNRGVV---SMVILKMTETQAGEYLLFIQSEATNYTI----LFTVSIRNTLLYT 144
Query: 136 VPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVIT 195
+ P + + L C+ PEP ++ + V
Sbjct: 145 LRRPYFRKMENQDA---------LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE 195
Query: 196 EKGETTVSYLLIQKARPSDNGKYQCNPANSQAKSVMVNVLN 236
++ + +D +C N +
Sbjct: 196 ---------KVLHELFGTD---IRCCARNELGRECTRLFTI 224
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 61.4 bits (149), Expect = 3e-11
Identities = 31/187 (16%), Positives = 66/187 (35%), Gaps = 29/187 (15%)
Query: 54 QVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTP 113
++++ R D T G + R+ +L +K + D+G Y+C+ ++
Sbjct: 31 EITWKRAVDGFTFTEGDKSLDG----RIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRI 86
Query: 114 HQAH-YIYLTVVVLVINDGKYLLVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPA 171
+YL + I + G+ IN++C V+ PPA
Sbjct: 87 GGHQKSMYLDI-----------EYA---PKFISNQTIYYSWEGNPINISCDVKS--NPPA 130
Query: 172 YIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAK 228
I W ++ ++ + + L I +D G+Y C N ++ +
Sbjct: 131 SIHWRRDKLVLPAKNTTN----LKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQ 186
Query: 229 SVMVNVL 235
++ +
Sbjct: 187 EYILALA 193
Score = 42.9 bits (101), Expect = 4e-05
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 143 IIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNV-ITEKGETT 201
II + L C P P I W ++ ++ I KG+
Sbjct: 4 IIQLKNETTYENGQVTLVCDAEGEPIP--EITWKRAVDGFTFTEGDKSLDGRIEVKGQHG 61
Query: 202 VSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
S L I+ + SD+G+Y C + KS+ +++
Sbjct: 62 SSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98
Score = 29.4 bits (66), Expect = 0.94
Identities = 14/112 (12%), Positives = 26/112 (23%), Gaps = 24/112 (21%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVVVLVINDGK 132
+ T L++ D G Y C + L +
Sbjct: 142 PAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALAD------- 194
Query: 133 YLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISY 184
VP G ++ + +T ++ P + I Y
Sbjct: 195 ---VPSS----PYGVKIIELSQTTAKVSF------NKPDS---HGGVPIHHY 230
Score = 27.8 bits (62), Expect = 3.1
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ T L++ D G Y C +
Sbjct: 142 PAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 57.8 bits (139), Expect = 3e-11
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
Query: 137 PEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVIT 195
P P+ I PE GS ++ TC S + P W + + ++
Sbjct: 9 PXPQ--ITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRA 66
Query: 196 EKGETTV--SYLLIQKARPSDNGKYQCNPANS 225
+ GE + L ++ + G YQC +N
Sbjct: 67 QGGELMEYTTILRLRNVEFTSEGXYQCVISNH 98
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 60.6 bits (147), Expect = 4e-11
Identities = 28/165 (16%), Positives = 52/165 (31%), Gaps = 32/165 (19%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKY 133
++ R + + + LQ++ + D G YEC + + + + V V
Sbjct: 153 ASNGRIKQLRSGA-----LQIESSEETDQGKYECVATNSAGVRYSSPANLYVRV------ 201
Query: 134 LLVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVN 192
P I G +N+TCV SP P Y+ W
Sbjct: 202 ---QNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMP--YVKWMQGA------------E 244
Query: 193 VITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
+T + + V +++ D+ Y C + + V
Sbjct: 245 DLTPEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITV 289
Score = 59.5 bits (144), Expect = 8e-11
Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 18/155 (11%)
Query: 75 NDQRFRVINNPTSDDWTLQLK-YPQHKDTGIYECQVSTTPHQA-HYIYLTVVVLVINDGK 132
N QRF I S L+++ +D +YEC + + + LTV+
Sbjct: 48 NSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSG 107
Query: 133 YLLVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGV 191
+ +I GP+ +E T + C +P+P I W + + + G +
Sbjct: 108 FP-------NIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDPSASNGRI 158
Query: 192 NVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQ 226
+ L I+ + +D GKY+C NS
Sbjct: 159 KQLRS------GALQIESSEETDQGKYECVATNSA 187
Score = 41.7 bits (98), Expect = 9e-05
Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 12/98 (12%)
Query: 143 IIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETT 201
I P+ +G + C P+P + WN ++ E E+
Sbjct: 9 FIKEPKDQIGVSGGVASFVCQATGDPKP--RVTWNKKGKKVNSQRFE-----TIEFDESA 61
Query: 202 VSYLLIQKAR-PSDNGKYQC---NPANSQAKSVMVNVL 235
+ L IQ R P D Y+C N + VL
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVL 99
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 59.2 bits (143), Expect = 5e-11
Identities = 33/172 (19%), Positives = 54/172 (31%), Gaps = 17/172 (9%)
Query: 68 TGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS-TTPHQAHYIYLTVVVL 126
T Y N + T + K +DTG Y C VS + + + ++VL
Sbjct: 46 TRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL 105
Query: 127 VINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHN-EAIISYD 185
V P + G+ LTC + PP+ W + + +
Sbjct: 106 V-----------PPSKPTVNIPSSATIGNRAVLTCSEQ-DGSPPSEYTWFKDGIVMPTNP 153
Query: 186 SQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
+ + T L+ SD G+Y C N + S V +
Sbjct: 154 KSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
Score = 44.2 bits (104), Expect = 1e-05
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 7/93 (7%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTV--SY 204
PEV I + + L+C P + W ++ + + + T +
Sbjct: 12 PEVRIPENNPVKLSCAYSGFSSP--RVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTG 69
Query: 205 LLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
+ + D G Y C + V V +
Sbjct: 70 ITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL 102
Score = 26.8 bits (59), Expect = 5.9
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 8 DIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
I + T + T V+N T L DTG Y C+
Sbjct: 146 GIVMPTNPKSTRAFSNSSYVLNPTTG---ELVFDPLSASDTGEYSCEAR 191
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 60.7 bits (147), Expect = 6e-11
Identities = 30/180 (16%), Positives = 54/180 (30%), Gaps = 40/180 (22%)
Query: 61 RDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS-TTPHQAHYI 119
+ L + + + N + L++ +D+G Y C S H I
Sbjct: 258 KKGGDLPSDKAKFENFNK------------ALRITNVSEEDSGEYFCLASNKMGSIRHTI 305
Query: 120 YLTVVVLVINDGKYLLVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHN 178
+ V P + P+ + + G L C +P+P + W N
Sbjct: 306 SVRVKA----------APY----WLDEPKNLILAPGEDGRLVCRANGNPKPT--VQWMVN 349
Query: 179 EAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
+ S N ++ + + S YQC N + V+VL
Sbjct: 350 GEPL--QSAPPNPNREVAGDT-----IIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402
Score = 58.0 bits (140), Expect = 4e-10
Identities = 28/167 (16%), Positives = 43/167 (25%), Gaps = 21/167 (12%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDT-GIYECQVSTTPHQAHYIYLTVVVLVINDGK 132
T D+R +N L +D Y C + V+
Sbjct: 160 TQDKRVSQGHNGD-----LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRG 214
Query: 133 YLLVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGV 191
G + G + L C+ P P I W + D +
Sbjct: 215 VAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTP--DIAWYKKGGDLPSDKAK--- 269
Query: 192 NVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
+ L I D+G+Y C N S ++ V V
Sbjct: 270 --FENFNKA----LRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK 310
Score = 42.9 bits (101), Expect = 5e-05
Identities = 27/173 (15%), Positives = 44/173 (25%), Gaps = 32/173 (18%)
Query: 61 RDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA--HY 118
R ++ R + VI+ + + G Y+C A +
Sbjct: 56 RFFNIAKDPRVSMRRRSGTLVIDFRSGG--------RPEEYEGEYQCFARNKFGTALSNR 107
Query: 119 IYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHN 178
I L V P V ++ G+ + L C P IFW +
Sbjct: 108 IRLQVSKS------------PLWPKENLDPVVVQEGAPLTLQCNPPPG-LPSPVIFWMSS 154
Query: 179 EAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSD-NGKYQCNPANSQAKSV 230
+R G+ L D Y CN ++
Sbjct: 155 SMEPITQDKR---VSQGHNGD-----LYFSNVMLQDMQTDYSCNARFHFTHTI 199
Score = 42.5 bits (100), Expect = 5e-05
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 148 EVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLI 207
+ ++ I + C + +P P W N + ++ V++ G T V
Sbjct: 26 DHIVDPRDNILIECEAKGNPAP--SFHWTRNSRFFN-IAKDPRVSMRRRSG-TLVIDFRS 81
Query: 208 QKARPSDNGKYQC 220
G+YQC
Sbjct: 82 GGRPEEYEGEYQC 94
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 58.6 bits (142), Expect = 6e-11
Identities = 32/170 (18%), Positives = 50/170 (29%), Gaps = 33/170 (19%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKY 133
+ QR V L + +D GIY CQ + Q + + +
Sbjct: 44 ISTQRVVVQKEGVRS--RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ------ 95
Query: 134 LLVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHN-EAIISYDSQRGGV 191
+ + G + C V SP P + W ++ E + + R
Sbjct: 96 ----KL--TFREVVSPQEFKQGEDAEVVCRVSSSPAPA--VSWLYHNEEVTTISDNR--- 144
Query: 192 NVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKS----VMVNV 234
L I SD G Y+C A + V+VNV
Sbjct: 145 --FAMLANNN---LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV 189
Score = 45.5 bits (108), Expect = 2e-06
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 12/92 (13%)
Query: 148 EVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLI 207
+V + G + TC PE ++N I +QR + + E S L I
Sbjct: 11 KVELSVGESKFFTCTAIGEPES--IDWYNPQGEKII-STQR-----VVVQKEGVRSRLTI 62
Query: 208 QKARPSDNGKYQC---NPANS-QAKSVMVNVL 235
A D G Y+C + Q +V++ +
Sbjct: 63 YNANIEDAGIYRCQATDAKGQTQEATVVLEIY 94
Score = 26.7 bits (59), Expect = 5.9
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ QR V L + +D GIY CQ +
Sbjct: 44 ISTQRVVVQKEGVRS--RLTIYNANIEDAGIYRCQAT 78
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 58.6 bits (142), Expect = 7e-11
Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 22/165 (13%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKY 133
+ V + + L + ++G Y + + + T +LV +
Sbjct: 47 STSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNG---SGQATSTAELLVKAE--- 100
Query: 134 LLVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVN 192
P P + + + + GS + L V P P + + + A I S
Sbjct: 101 -TAP-PN--FVQRLQSMTVRQGSQVRLQVRVTGIPTP--VVKFYRDGAEIQ-SSLD--FQ 151
Query: 193 VITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
+ E + LLI +A P D+G Y N + + V
Sbjct: 152 ISQEGDLYS---LLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 50.9 bits (122), Expect = 3e-08
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 9/84 (10%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
GST + P P + W + +IS S GV + G L I +
Sbjct: 20 GSTATFEAHISGFPVP--EVSWFRDGQVIS-TSTLPGVQISFSDGRAK---LTIPAVTKA 73
Query: 214 DNGKYQC---NPANSQAKSVMVNV 234
++G+Y N + + + V
Sbjct: 74 NSGRYSLKATNGSGQATSTAELLV 97
Score = 27.4 bits (61), Expect = 3.8
Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ F++ D ++L + +D+G Y +
Sbjct: 145 QSSLDFQISQE--GDLYSLLIAEAYPEDSGTYSVNAT 179
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 58.2 bits (141), Expect = 1e-10
Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 24/167 (14%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKY 133
+ ++R+ L + D +Y+ + + Q + T + V
Sbjct: 47 ADGLKYRIQEFK-GGYHQLIIASVTDDDATVYQVRATN---QGGSVSGTASLEV------ 96
Query: 134 LLVPEPET--DIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGG 190
VP + G V G +++ P+P I W + +I ++
Sbjct: 97 -EVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP--VITWQKGQDLID-NNGH-- 150
Query: 191 VNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
+ S + D G Y N K+V ++V
Sbjct: 151 --YQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
Score = 45.5 bits (108), Expect = 3e-06
Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 9/85 (10%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
S L C V P+P + W I D + + + L+I
Sbjct: 19 QSNATLVCKVTGHPKP--IVKWYRQGKEIIADGLKYRIQEF----KGGYHQLIIASVTDD 72
Query: 214 DNGKYQC---NPANSQAKSVMVNVL 235
D YQ N S + + + V
Sbjct: 73 DATVYQVRATNQGGSVSGTASLEVE 97
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 58.4 bits (141), Expect = 1e-10
Identities = 33/177 (18%), Positives = 53/177 (29%), Gaps = 24/177 (13%)
Query: 67 TTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS---TTPHQAHYIYLTV 123
TT Y + + T + KD G Y C VS + I+LTV
Sbjct: 42 TTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTV 101
Query: 124 VVLVINDGKYLLVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAII 182
LVP P + G+ LTC PP+ W + +
Sbjct: 102 -----------LVP-PS--KPTISVPSSVTIGNRAVLTCSE-HDGSPPSEYSWFKDGISM 146
Query: 183 SYDSQRGGVNVITEKG--ETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
+ + + L+ D+G+Y C N + +S ++
Sbjct: 147 LTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 203
Score = 40.7 bits (95), Expect = 1e-04
Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 9/96 (9%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVS--Y 204
+V + +I LTC P + W + + T S
Sbjct: 9 SDVQVPENESIKLTCTYSGFSSP--RVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSG 66
Query: 205 LLIQKARPSDNGKYQCNPANSQAK-----SVMVNVL 235
+ DNG+Y C + + S+ + VL
Sbjct: 67 ITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL 102
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 59.3 bits (143), Expect = 1e-10
Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 17/152 (11%)
Query: 86 TSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIG 145
+ D L L +D+G Y C + + + V D + P+ +
Sbjct: 77 WAQDGALWLLPALQEDSGTYVCTTRN-ASYCDKMSIELRVFENTDAFLPFISYPQILTLS 135
Query: 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYL 205
V + +L+ R + I W + ++ D+++ ++ +G T L
Sbjct: 136 TSGVLVCP----DLSEFTRDKTDV--KIQWYKDSLLLDKDNEK----FLSVRGTTH---L 182
Query: 206 LIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
L+ D G Y+C Q ++ ++
Sbjct: 183 LVHDVALEDAGYYRCVLTFAHEGQQYNITRSI 214
Score = 56.2 bits (135), Expect = 1e-09
Identities = 26/145 (17%), Positives = 45/145 (31%), Gaps = 14/145 (9%)
Query: 91 TLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPE-V 149
L + +D G Y C ++ Y + L I K +P II + +
Sbjct: 181 HLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPV----IISPLKTI 236
Query: 150 FIENGSTINLTCVVRFSP--EPPAYIFWNHNEAIISYDSQR-----GGVNVITEKGETTV 202
GS + + C V ++W N+ I G +E E +
Sbjct: 237 SASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYI 296
Query: 203 -SYLLIQKARPSDNG-KYQCNPANS 225
L+ D ++C N+
Sbjct: 297 EVPLIFDPVTREDLHMDFKCVVHNT 321
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 58.7 bits (142), Expect = 2e-10
Identities = 27/150 (18%), Positives = 44/150 (29%), Gaps = 31/150 (20%)
Query: 91 TLQLKYPQHKDTGIYECQVSTTP-HQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPE- 148
L++ Q +D G YEC + LT P +
Sbjct: 259 ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA----------QPN----WVQIIND 304
Query: 149 VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQ 208
+ + ++ C P+P W N G + ++ + L I
Sbjct: 305 IHVAMEESVFWECKANGRPKP--TYRWLKN----------GDPLLTRDRIQIEQGTLNIT 352
Query: 209 KARPSDNGKYQC---NPANSQAKSVMVNVL 235
SD G YQC N S ++V+
Sbjct: 353 IVNLSDAGMYQCVAENKHGVIFSSAELSVI 382
Score = 56.0 bits (135), Expect = 2e-09
Identities = 33/166 (19%), Positives = 54/166 (32%), Gaps = 20/166 (12%)
Query: 73 YTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGK 132
Y +++RF + L + + D G Y C V+ T + +++ NDG
Sbjct: 145 YQDNRRFVS-----QETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGV 199
Query: 133 YLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVN 192
P+ ++ V E G+T+ L C +P P I W D +
Sbjct: 200 MGEYE-PKIEVQFPETVPAEKGTTVKLECFALGNPVP--TILWRRA------DGKPIARK 250
Query: 193 VITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
K L I + D G Y+C N +
Sbjct: 251 ARRHKSNGI---LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY 293
Score = 54.5 bits (131), Expect = 5e-09
Identities = 27/130 (20%), Positives = 37/130 (28%), Gaps = 23/130 (17%)
Query: 98 QHKDTGIYECQVSTTPHQA--HYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGS 155
+ +D G Y+C + + L L V + G
Sbjct: 71 KTQDAGTYQCIATNSFGTIVSREAKLQFAYL------------ENFKTRTRSTVSVRRGQ 118
Query: 156 TINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDN 215
+ L C W NE D++R V E G L I K SD
Sbjct: 119 GMVLLCGPPPHS-GELSYAWIFNEYPSYQDNRR---FVSQETGN-----LYIAKVEKSDV 169
Query: 216 GKYQCNPANS 225
G Y C N+
Sbjct: 170 GNYTCVVTNT 179
Score = 37.5 bits (87), Expect = 0.002
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 152 ENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKAR 211
+ L+C V+ +P+P +I W N + G S L+ +
Sbjct: 21 SEEKKVKLSCEVKGNPKP--HIRWKLNGTDVDIGM---DFRYSVVDG----SLLINNPNK 71
Query: 212 PSDNGKYQCNPANS 225
D G YQC NS
Sbjct: 72 TQDAGTYQCIATNS 85
Score = 26.7 bits (59), Expect = 7.3
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 6/37 (16%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
R ++ TL + D G+Y+C
Sbjct: 337 LTRDRIQIEQG------TLNITIVNLSDAGMYQCVAE 367
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 57.5 bits (138), Expect = 3e-10
Identities = 27/154 (17%), Positives = 42/154 (27%), Gaps = 17/154 (11%)
Query: 75 NDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYL 134
+D R R L L Q D Y C V + V
Sbjct: 62 HDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAK------ 115
Query: 135 LVPE-PETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNV 193
PE E G +E+ + TC R P I W N + +
Sbjct: 116 --PEATEVSPNKGTLSVMEDSAQEIATCNSRNG-NPAPKITWYRNGQRLEVPVEMNPEGY 172
Query: 194 ITEKGE-------TTVSYLLIQKARPSDNGKYQC 220
+T + + S L ++ + + + C
Sbjct: 173 MTSRTVREASGLLSLTSTLYLRLRKDDRDASFHC 206
Score = 37.5 bits (86), Expect = 0.002
Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 19/107 (17%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFW------NHNEAIISYDSQRGGVNVITEKGET 200
P V + G ++ L C + W + S + Q + V
Sbjct: 8 PLVEVMRGKSVILDCTPT-GTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRG 66
Query: 201 TVSY--------LLIQKARPSDNGKYQC----NPANSQAKSVMVNVL 235
L++ +A+ D Y C A + + +NV
Sbjct: 67 RSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVF 113
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 56.0 bits (135), Expect = 4e-10
Identities = 24/178 (13%), Positives = 53/178 (29%), Gaps = 48/178 (26%)
Query: 63 IHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA---HYI 119
I + T+ +++ N TL++K+ + D IY+ + T +
Sbjct: 44 IAQFRKEKETFKEKDTYKLFKN-----GTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIF 98
Query: 120 YLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNE 179
L + V +P+ LTC V +P + +
Sbjct: 99 DLKI---------QERVSKPKISW---------TCINTTLTCEVMNGTDP--ELNLYQDG 138
Query: 180 AIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
+ + ++ K S + K++C N + ++ V+
Sbjct: 139 KHLKLSQR-----------------VITHKWTTSLSAKFKCTAGNKVSKESSVEPVSC 179
Score = 34.9 bits (80), Expect = 0.010
Identities = 13/87 (14%), Positives = 22/87 (25%), Gaps = 6/87 (6%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSY---LLIQKA 210
G INL + I W R EK + L I+
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73
Query: 211 RPSDNGKYQC---NPANSQAKSVMVNV 234
+ D Y+ + + ++
Sbjct: 74 KTDDQDIYKVSIYDTKGKNVLEKIFDL 100
Score = 30.6 bits (69), Expect = 0.31
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 9 IHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
I + T+ +++ N TL++K+ + D IY+ +
Sbjct: 44 IAQFRKEKETFKEKDTYKLFKN-----GTLKIKHLKTDDQDIYKVSIY 86
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 57.6 bits (139), Expect = 6e-10
Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 31/150 (20%)
Query: 91 TLQLKYPQHKDTGIYECQVSTTP-HQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPE- 148
L ++ +D G YEC+ + + + P+ +
Sbjct: 258 LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQ------------PD--WLDVITD 303
Query: 149 VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQ 208
+ GS + +CV P P + W + G + E + L
Sbjct: 304 TEADIGSDLRWSCVASGKPRP--AVRWLRD----------GQPLASQNRIEVSGGELRFS 351
Query: 209 KARPSDNGKYQC---NPANSQAKSVMVNVL 235
K D+G YQC N + S + V
Sbjct: 352 KLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
Score = 52.9 bits (127), Expect = 2e-08
Identities = 24/166 (14%), Positives = 43/166 (25%), Gaps = 24/166 (14%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKY 133
+ +RF L + + D G Y C ++ + + +
Sbjct: 147 ADGRRFVSQTTGN-----LYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAED 201
Query: 134 LLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWN-HNEAIISYDSQRGGVN 192
P + + G + L C +P P I W + + S +
Sbjct: 202 ARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVP--QIKWRKLDGSQTSKWLSSEPL- 258
Query: 193 VITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
L IQ D G Y+C N + +
Sbjct: 259 ------------LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 292
Score = 50.6 bits (121), Expect = 1e-07
Identities = 31/142 (21%), Positives = 38/142 (26%), Gaps = 24/142 (16%)
Query: 98 QHKDTGIYECQVSTTPHQA--HYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGS 155
+ KD G Y+C + L L E V I G
Sbjct: 70 KAKDAGSYQCVATNARGTVVSREASLRFGFL------------QEFSAEERDPVKITEGW 117
Query: 156 TINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDN 215
+ TC P W NE + G V G L I K SD
Sbjct: 118 GVMFTCSPPPHY-PALSYRWLLNEFPNFIPAD-GRRFVSQTTGN-----LYIAKTEASDL 170
Query: 216 GKYQC---NPANSQAKSVMVNV 234
G Y C + + KSV
Sbjct: 171 GNYSCFATSHIDFITKSVFSKF 192
Score = 34.8 bits (80), Expect = 0.019
Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 9/73 (12%)
Query: 153 NGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARP 212
+ LTC R +P W N + G ++ +
Sbjct: 21 AEEKVTLTCRARANPPA--TYRWKMNGTELKMGP---DSRYRLVAG----DLVISNPVKA 71
Query: 213 SDNGKYQCNPANS 225
D G YQC N+
Sbjct: 72 KDAGSYQCVATNA 84
Score = 27.5 bits (61), Expect = 4.6
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 6/37 (16%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ R V L+ +D+G+Y+C
Sbjct: 336 ASQNRIEVSGG------ELRFSKLVLEDSGMYQCVAE 366
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 55.9 bits (135), Expect = 6e-10
Identities = 27/172 (15%), Positives = 63/172 (36%), Gaps = 37/172 (21%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYEC-------QVSTTPHQAHYIYLTVVVL 126
+++++ ++ TL + + +D G+Y C +V T+ L +
Sbjct: 49 IQSRKYKMSSDG--RTHTLTVMTEEQEDEGVYTCIATNEVGEVETS------SKLLLQAT 100
Query: 127 VINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDS 186
P+ + + GST+ L + P P + W H + ++ +S
Sbjct: 101 ----------PQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVP--AMTWFHGQKLLQ-NS 147
Query: 187 QRGGVNVITEKGETTVSYLLIQKA-RPSDNGKYQC---NPANSQAKSVMVNV 234
+ + + + T L+++ R + GKY+ N + + V +
Sbjct: 148 EN--ITIENTEHYTH---LVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEI 194
Score = 43.1 bits (102), Expect = 2e-05
Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 11/85 (12%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
G L+C + P P I W + + ++ G L +
Sbjct: 22 GEAAQLSCQIVGRPLP--DIKWYRFGKELIQSRKY----KMSSDGR--THTLTVMTEEQE 73
Query: 214 DNGKYQC---NPANSQAKSVMVNVL 235
D G Y C N S + +
Sbjct: 74 DEGVYTCIATNEVGEVETSSKLLLQ 98
Score = 25.8 bits (57), Expect = 9.8
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHK-DTGIYECQVS 56
N + + N L +K Q K G Y+ Q+S
Sbjct: 145 QNSENITIENTE--HYTHLVMKNVQRKTHAGKYKVQLS 180
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 53.9 bits (130), Expect = 7e-10
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 143 IIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETT 201
I P + I+ G + + C P P + W+ I ++G ++ TT
Sbjct: 8 IEALPSDISIDEGKVLTVACAFTGEPTP--EVTWSCGGRKIH-SQEQGRFHIENTDDLTT 64
Query: 202 VSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
L+I + D G Y N S + +V +++
Sbjct: 65 ---LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 27.3 bits (61), Expect = 1.6
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
RF + N D TL + Q +D G+Y +
Sbjct: 49 QEQGRFHIENTD--DLTTLIIMDVQKQDGGLYTLSLG 83
Score = 27.3 bits (61), Expect = 1.6
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 110
RF + N D TL + Q +D G+Y +
Sbjct: 49 QEQGRFHIENTD--DLTTLIIMDVQKQDGGLYTLSLG 83
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 56.3 bits (136), Expect = 1e-09
Identities = 23/170 (13%), Positives = 50/170 (29%), Gaps = 18/170 (10%)
Query: 69 GRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVI 128
G+ + ++R+ L + D +Y+ + + L +
Sbjct: 42 GKEIIADGLKYRIQEFK-GGYHQLIIASVTDDDATVYQVRATN----QGGSVSGTASLEV 96
Query: 129 NDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQR 188
+ +P+ + G V G +++ P+P I W + +I +
Sbjct: 97 EVPAKIHLPKT---LEGMGAVHALRGEVVSIKIPFSGKPDP--VITWQKGQDLIDNNGHY 151
Query: 189 GGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
+ S + D G Y N K+V ++V
Sbjct: 152 -----QVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
Score = 43.6 bits (103), Expect = 2e-05
Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 9/84 (10%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
S L C V P+P + W I D + + + L+I
Sbjct: 19 QSNATLVCKVTGHPKPI--VKWYRQGKEIIADGLKYRIQEF----KGGYHQLIIASVTDD 72
Query: 214 DNGKYQC---NPANSQAKSVMVNV 234
D YQ N S + + + V
Sbjct: 73 DATVYQVRATNQGGSVSGTASLEV 96
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 53.5 bits (129), Expect = 1e-09
Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 12/102 (11%)
Query: 137 PEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITE 196
P+ + G +NL + P P + W A + D+ R V+V T
Sbjct: 22 PKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQ--VVWTKGGAPL--DTSR--VHVRTS 75
Query: 197 KGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
+T +++A SD+G+Y+ ++ + V+
Sbjct: 76 DFDTV---FFVRQAARSDSGEYELSVQIENMKDTATIRIRVV 114
Score = 27.7 bits (62), Expect = 1.7
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
R V + D ++ D+G YE V
Sbjct: 67 TSRVHVRTSD--FDTVFFVRQAARSDSGEYELSVQ 99
Score = 27.7 bits (62), Expect = 1.7
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 76 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 110
R V + D ++ D+G YE V
Sbjct: 67 TSRVHVRTSD--FDTVFFVRQAARSDSGEYELSVQ 99
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 53.7 bits (129), Expect = 3e-09
Identities = 22/178 (12%), Positives = 51/178 (28%), Gaps = 41/178 (23%)
Query: 60 HRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYI 119
+ + G+ T + F+ + + L++ +D G Y ++ I
Sbjct: 40 QKILEYFPNGKKTVF-ESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKI 98
Query: 120 YLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNE 179
+ V Y +V +P + S LTC V + + +
Sbjct: 99 TMEV---------YEMVSKP---------MIYWECSNATLTCEVLEGTDV--ELKLYQGK 138
Query: 180 AIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
+ Q + + ++C N + +++ +VN
Sbjct: 139 EHLRSLRQ-----------------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 179
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 55.3 bits (133), Expect = 3e-09
Identities = 29/166 (17%), Positives = 56/166 (33%), Gaps = 17/166 (10%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDT-GIYECQVSTTPHQAHYIYLTVVVLVINDGK 132
D ++ V+ + L ++ +D Y+C+ + T LVI +
Sbjct: 153 EYDGKYLVLPSGE-----LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPI 207
Query: 133 YLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVN 192
P + + + TI+L C + P P W + +
Sbjct: 208 SSSAPRTPALV--QKPLELMVAHTISLLCPAQGFPAP--SFRWYKFIEGTTRKQAVVLND 263
Query: 193 VITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
+ + T L+I+ A D+GKY C N ++ ++ V
Sbjct: 264 RVKQVSGT----LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 305
Score = 54.6 bits (131), Expect = 5e-09
Identities = 33/179 (18%), Positives = 56/179 (31%), Gaps = 44/179 (24%)
Query: 61 RDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTP-HQAHYI 119
+ I T + ND R + ++ TL +K +D+G Y C V+ + ++
Sbjct: 248 KFIEGTTRKQAVVLND-RVKQVSG------TLIIKDAVVEDSGKYLCVVNNSVGGESVET 300
Query: 120 YLTVVVLVINDGKYLLVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHN 178
LTV P ++ G TC +P + W +
Sbjct: 301 VLTVTA----------PLS----AKIDPPTQTVDFGRPAVFTCQYTGNPIKT--VSWMKD 344
Query: 179 EAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
G + + L I+ + D G YQC N S S + +
Sbjct: 345 -----------GKAIGHSESV-----LRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 51.1 bits (122), Expect = 8e-08
Identities = 24/155 (15%), Positives = 45/155 (29%), Gaps = 29/155 (18%)
Query: 81 VINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA--HYIYLTVVVLVINDGKYLLVPE 138
V ++D Y Q +Y C +++ VV Y
Sbjct: 62 VFPPFRAED------YRQEVHAQVYACLARNQFGSIISRDVHVRAVVA----QYYEADVN 111
Query: 139 PETDIIGGPEVFIENGSTINLTCVV-RFSPEPPAYIFWNHNEAIISYDSQRGGVNV-ITE 196
E + G++ + C++ F + + W+ +E + +
Sbjct: 112 KEH---------VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP 162
Query: 197 KGETTVSYLLIQKARPSDN-GKYQCNPANSQAKSV 230
GE L I++ P D YQC +
Sbjct: 163 SGE-----LHIREVGPEDGYKSYQCRTKHRLTGET 192
Score = 35.7 bits (82), Expect = 0.009
Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 17/96 (17%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLL 206
+ N + + C +P P I W ++ D G+ I+ G+ L+
Sbjct: 12 NRIDFSNSTGAEIECKASGNPMP--EIIWIRSDGTAVGDV--PGLRQISSDGK-----LV 62
Query: 207 IQKARPSDN------GKYQCNPANS--QAKSVMVNV 234
R D Y C N S V+V
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHV 98
Score = 26.4 bits (58), Expect = 9.9
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 7 RDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ I T + ND R + ++ TL +K +D+G Y C V+
Sbjct: 248 KFIEGTTRKQAVVLND-RVKQVSG------TLIIKDAVVEDSGKYLCVVN 290
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 54.1 bits (129), Expect = 3e-09
Identities = 30/161 (18%), Positives = 46/161 (28%), Gaps = 25/161 (15%)
Query: 80 RVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVVVLVINDGKYLLVPE 138
++I T D L G+Y+C+ S + Y
Sbjct: 39 KMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDA 98
Query: 139 PETDIIGGPEVFIE--------------NGSTINLTCVVRFSPEPPAYIFWNHNEAIISY 184
+ D E +G+T+ LTC P + I W HN+ I
Sbjct: 99 KKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQ----YPGSEILWQHNDKNIGG 154
Query: 185 DSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCNPANS 225
D + G L + + +G Y C P S
Sbjct: 155 DEDDKNI------GSDEDHLSLKEFSELEQSGYYVCYPRGS 189
Score = 30.2 bits (67), Expect = 0.41
Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 18/81 (22%)
Query: 152 ENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKAR 211
+ ++ LTC I W + +I + ++ +
Sbjct: 16 QEDGSVLLTCDA---EAKN--ITWFKDGKMIGFLTEDK-------------KKWNLGSNA 57
Query: 212 PSDNGKYQCNPANSQAKSVMV 232
G YQC + +++K + V
Sbjct: 58 KDPRGMYQCKGSQNKSKPLQV 78
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 52.0 bits (125), Expect = 3e-09
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 9/84 (10%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
G + TC V +P+P I+W + IS S ++ L +
Sbjct: 23 GMPVTFTCRVAGNPKP--KIYWFKDGKQISPKSDH----YTIQRDLDGTCSLHTTASTLD 76
Query: 214 DNGKYQC---NPANSQAKSVMVNV 234
D+G Y NP + + + V
Sbjct: 77 DDGNYTIMAANPQGRISCTGRLMV 100
Score = 25.4 bits (56), Expect = 8.2
Identities = 5/37 (13%), Positives = 8/37 (21%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ I +L D G Y +
Sbjct: 50 SPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAA 86
Score = 25.4 bits (56), Expect = 8.2
Identities = 5/37 (13%), Positives = 8/37 (21%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 110
+ I +L D G Y +
Sbjct: 50 SPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAA 86
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 51.9 bits (125), Expect = 4e-09
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 12/97 (12%)
Query: 143 IIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETT 201
II PE + G ++ L V + W I +S+ + V + +
Sbjct: 10 IIQFPEDQKVRAGESVELFGKVTGTQPI--TCTWMKFRKQIQ-ESEH--MKVENSENGSK 64
Query: 202 VSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
L I AR G Y N S+ V + V+
Sbjct: 65 ---LTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 98
Score = 28.4 bits (64), Expect = 0.97
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ +V N+ + L + + + G Y V
Sbjct: 49 QESEHMKVENSE--NGSKLTILAARQEHCGCYTLLVE 83
Score = 28.4 bits (64), Expect = 0.97
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 110
+ +V N+ + L + + + G Y V
Sbjct: 49 QESEHMKVENSE--NGSKLTILAARQEHCGCYTLLVE 83
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 52.1 bits (125), Expect = 4e-09
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 54 QVSFVRHRDIHLLTTGRYT----YTNDQRFRVIN---NPTSDDWTLQLKYPQHKDTGIYE 106
Q+++ RH + + T Y+ +R + + +L++ + +D G Y
Sbjct: 36 QLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYT 95
Query: 107 CQVSTTPHQAHYIYLTVVVLV 127
C T P + + + + VL
Sbjct: 96 CLFVTFPQGSRSVDIWLRVLA 116
Score = 40.2 bits (94), Expect = 7e-05
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 1 VSFVRHRDIHLLTTGRYT----YTNDQRFRVIN---NPTSDDWTLQLKYPQHKDTGIYEC 53
+++ RH + + T Y+ +R + + +L++ + +D G Y C
Sbjct: 37 LTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTC 96
Query: 54 QVS 56
Sbjct: 97 LFV 99
Score = 38.3 bits (89), Expect = 3e-04
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 19/108 (17%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFW--------NHNEAIISYD-------SQRGGV 191
+V G ++ L C ++ ++ + + A+ S+R
Sbjct: 8 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEF 67
Query: 192 NVITEKGETTVSYLLIQKARPSDNGKYQC----NPANSQAKSVMVNVL 235
E + L + R D G Y C P S++ + + VL
Sbjct: 68 VAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL 115
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 52.0 bits (125), Expect = 4e-09
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
G ++ L C + P P +FW N ++ +++ R + + T LLI+
Sbjct: 30 GDSVKLECQISAIPPP--KLFWKRNNEMVQFNTDR----ISLYQDNTGRVTLLIKDVNKK 83
Query: 214 DNGKYQC---NPANSQAKSVMVNVL 235
D G Y N A + ++V
Sbjct: 84 DAGWYTVSAVNEAGVTTCNTRLDVT 108
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 53.4 bits (128), Expect = 4e-09
Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 34/149 (22%)
Query: 91 TLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVF 150
+L + + +D+G Y+CQ V L + LL
Sbjct: 52 SLNIVNAKFEDSGEYKCQHQQVNESE------PVYLEVFSDWLLLQA---------SAEV 96
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
+ G + L C + + I++ EA+ + + I A
Sbjct: 97 VMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYEN---------------HNISITNA 141
Query: 211 RPSDNGKYQCNPANS----QAKSVMVNVL 235
D+G Y C +++ + + V+
Sbjct: 142 TVEDSGTYYCTGKVWQLDYESEPLNITVI 170
Score = 41.0 bits (96), Expect = 7e-05
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 18/99 (18%)
Query: 136 VPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVIT 195
VP+ + P I G + LTC + W HN ++ +
Sbjct: 1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFF-EVSSTKWFHNGSLSEETNSS------- 52
Query: 196 EKGETTVSYLLIQKARPSDNGKYQCNPANSQAKSVMVNV 234
L I A+ D+G+Y+C +S V +
Sbjct: 53 ---------LNIVNAKFEDSGEYKCQHQQV-NESEPVYL 81
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 53.5 bits (128), Expect = 4e-09
Identities = 29/192 (15%), Positives = 58/192 (30%), Gaps = 32/192 (16%)
Query: 52 ECQVSFVRHRDIHLLTTGRYTYTND-----QRFRVI-NNPTSDDWTLQLKYPQHKDTGIY 105
EC ++ + ND +R ++ + Q +D+G Y
Sbjct: 23 ECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQY 82
Query: 106 ECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRF 165
C V + + + + +T I+ P + LTC R
Sbjct: 83 RCLVICGAAWDY----KYLTVKVKASY----MRIDTRILEVPG-----TGEVQLTCQARG 129
Query: 166 SPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NP 222
P + W + + R T +G V+ +L +P + + C N
Sbjct: 130 YPLA--EVSWQNVSVPANTSHIR------TPEGLYQVTSVLR--LKPQPSRNFSCMFWNA 179
Query: 223 ANSQAKSVMVNV 234
+ S +++
Sbjct: 180 HMKELTSAIIDP 191
Score = 40.4 bits (94), Expect = 2e-04
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 8/87 (9%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYD---SQRGGVNVITEKGETTVSYLLIQKA 210
GS+++L C F + + Q ++ E+ + I
Sbjct: 17 GSSVSLEC--DFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSV 74
Query: 211 RPSDNGKYQC---NPANSQAKSVMVNV 234
+ D+G+Y+C A K + V V
Sbjct: 75 QVRDSGQYRCLVICGAAWDYKYLTVKV 101
Score = 28.9 bits (64), Expect = 1.2
Identities = 12/67 (17%), Positives = 20/67 (29%)
Query: 27 VINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPT 86
+ + Q +D+G Y C V D LT R++ P
Sbjct: 58 LEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPG 117
Query: 87 SDDWTLQ 93
+ + L
Sbjct: 118 TGEVQLT 124
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 53.5 bits (128), Expect = 5e-09
Identities = 24/149 (16%), Positives = 54/149 (36%), Gaps = 25/149 (16%)
Query: 91 TLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVF 150
+L + KD G+Y ++ ++ + V +
Sbjct: 72 SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV----------HQPVTQPFLQVTNTT 121
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
++ ++ LTC+ S + A I W N + + +++ L I
Sbjct: 122 VKELDSVTLTCL---SNDIGANIQWLFNSQSLQLTERM----TLSQNNSI----LRIDPI 170
Query: 211 RPSDNGKYQC---NPANSQ-AKSVMVNVL 235
+ D G+YQC NP + + + S+ ++++
Sbjct: 171 KREDAGEYQCEISNPVSVRRSNSIKLDII 199
Score = 26.9 bits (59), Expect = 5.2
Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 40/129 (31%)
Query: 37 TLQLKYPQHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPT---------- 86
+L + KD G+Y ++ +R Q F + N T
Sbjct: 72 SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLT 131
Query: 87 ----------------------------SDDWTLQLKYPQHKDTGIYECQVSTT--PHQA 116
++ L++ + +D G Y+C++S ++
Sbjct: 132 CLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRS 191
Query: 117 HYIYLTVVV 125
+ I L ++
Sbjct: 192 NSIKLDIIF 200
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 52.9 bits (127), Expect = 5e-09
Identities = 27/148 (18%), Positives = 40/148 (27%), Gaps = 34/148 (22%)
Query: 91 TLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVF 150
+ D+G Y CQ T ++D +L V + F
Sbjct: 52 PSYRFKANNNDSGEYTCQTGQTS--------------LSDPVHLTVLFEWLVLQTPHLEF 97
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
E G TI L C P + + N + I +A
Sbjct: 98 QE-GETIMLRCHSWKDK-PLVKVTFFQNGKSQKFSHLD--------------PTFSIPQA 141
Query: 211 RPSDNGKYQCNPANSQ----AKSVMVNV 234
S +G Y C +K V + V
Sbjct: 142 NHSHSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 45.2 bits (107), Expect = 3e-06
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 18/90 (20%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLL 206
P + + ++ LTC SPE + ++ G + T
Sbjct: 12 PWINVLQEDSVTLTCQGARSPESDSIQWF------------HNGNLI-----PTHTQPSY 54
Query: 207 IQKARPSDNGKYQCNPANSQA-KSVMVNVL 235
KA +D+G+Y C + V + VL
Sbjct: 55 RFKANNNDSGEYTCQTGQTSLSDPVHLTVL 84
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 53.7 bits (129), Expect = 5e-09
Identities = 30/171 (17%), Positives = 52/171 (30%), Gaps = 26/171 (15%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKY 133
+ RV + + ++ + +D G Y C QA + ++ + V+ D
Sbjct: 53 NEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD--- 109
Query: 134 LLVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVN 192
D P+ + G T L C P + W + +
Sbjct: 110 --------DFRVEPKDTRVAKGETALLECG-PPKGIPEPTLIWIKDGVPLDDLKAMSFGA 160
Query: 193 ----VITEKGETTVSYLLIQKARPSDNGKYQCNPANS----QAKSVMVNVL 235
I + G LLI P D G Y+C N ++ + V
Sbjct: 161 SSRVRIVDGGN-----LLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206
Score = 45.6 bits (108), Expect = 3e-06
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 143 IIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETT 201
II P + ++ L C V PEP I W + +S + ++ + + K
Sbjct: 12 IIEHPTDLVVKKNEPATLNCKVEGKPEP--TIEWFKDGEPVSTNEKKS--HRVQFKDGAL 67
Query: 202 VSYLLIQKARPSDNGKYQCNPANS 225
Y +Q + D G+Y C N
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNR 91
Score = 26.4 bits (58), Expect = 8.7
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 11 LLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
L ++ R R++ D L + + D G Y+C
Sbjct: 150 LDDLKAMSFGASSRVRIV-----DGGNLLISNVEPIDEGNYKCIAQ 190
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 53.7 bits (129), Expect = 6e-09
Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 26/165 (15%)
Query: 76 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLL 135
++ + + + D G+Y C +A + L
Sbjct: 58 RSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEA--VSHDA---------SLE 106
Query: 136 VPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVI 194
V D P V + G + C P I W + + + +R +
Sbjct: 107 VAILRDDFRQNPSDVMVAVGEPAVMECQPPRG-HPEPTISWKKDGSPLDDKDER----IT 161
Query: 195 TEKGETTVSYLLIQKARPSDNGKYQCNPANS----QAKSVMVNVL 235
G+ L+I R SD GKY C N +++ + VL
Sbjct: 162 IRGGK-----LMITYTRKSDAGKYVCVGTNMVGERESEVAELTVL 201
Score = 41.7 bits (98), Expect = 7e-05
Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
Query: 148 EVFIENGSTINLTCVVRFSPEPPAYIFWNHN-EAIISYDSQRGGVNVITEKGETTVSYLL 206
++ + G L C P P I W E + + ++ G ++
Sbjct: 18 DLIVSKGEPATLNCKAEGRPTP--TIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIV 75
Query: 207 IQKARPSDNGKYQCNPANS 225
+ D G Y C N
Sbjct: 76 HGRKSRPDEGVYVCVARNY 94
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 54.3 bits (130), Expect = 6e-09
Identities = 35/252 (13%), Positives = 58/252 (23%), Gaps = 59/252 (23%)
Query: 26 RVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNP 85
+ L L DTG Y C + R + Y + D + N
Sbjct: 41 MAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETD-ERKRLYIFVPDPTVGFLPND 99
Query: 86 TSDD-------------------------------------WTLQLKYPQHKDTGIYECQ 108
+ + Q + + Y C+
Sbjct: 100 AEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICK 159
Query: 109 VSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPE 168
+ + V L + + + G I L C+V +
Sbjct: 160 TTIGDREVDSDAYYVYR---------LQVSSINVSVNAVQTVVRQGENITLMCIVIGNEV 210
Query: 169 PPAYIFWNHNEAIISYDSQRGGVNVITEKGETTV---SYLLIQKARPSDNGKYQC---NP 222
W + +S R V + S L I A D+G Y C
Sbjct: 211 V--NFEWTYP----RKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTES 264
Query: 223 ANSQAKSVMVNV 234
N +N+
Sbjct: 265 VNDHQDEKAINI 276
Score = 41.6 bits (97), Expect = 9e-05
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 19/95 (20%)
Query: 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYL 205
GPE+ + ST LTC A + W + + + T S L
Sbjct: 7 GPELVLNVSSTFVLTCSG------SAPVVWERMSQEPPQEMAK-------AQDGTFSSVL 53
Query: 206 LIQKARPSDNGKYQC------NPANSQAKSVMVNV 234
+ D G+Y C + K + + V
Sbjct: 54 TLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFV 88
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 50.9 bits (122), Expect = 7e-09
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 10/85 (11%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
+T+ C +P P + W N + + GG V + L+++ PS
Sbjct: 23 ANTVKFRCPAGGNPMP--TMRWLKNGKEFKQEHRIGGYKVRNQHWS-----LIMESVVPS 75
Query: 214 DNGKYQC---NPANSQAKSVMVNVL 235
D G Y C N S + ++V+
Sbjct: 76 DKGNYTCVVENEYGSINHTYHLDVV 100
Score = 25.5 bits (56), Expect = 7.3
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ R + W+L ++ D G Y C V
Sbjct: 50 KQEHRIGGYKV-RNQHWSLIMESVVPSDKGNYTCVVE 85
Score = 25.5 bits (56), Expect = 7.3
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 110
+ R + W+L ++ D G Y C V
Sbjct: 50 KQEHRIGGYKV-RNQHWSLIMESVVPSDKGNYTCVVE 85
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 50.9 bits (122), Expect = 7e-09
Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 14/97 (14%)
Query: 143 IIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETT 201
I+ GP + T L C P P I W R I E+G
Sbjct: 11 ILQGPANQTLAVDGTALLKCKATGDPLP--VISWLKEGFTFPGRDPR---ATIQEQGT-- 63
Query: 202 VSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
L I+ R SD G Y C + + + S +++V
Sbjct: 64 ---LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
Score = 27.0 bits (60), Expect = 2.2
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
D R + T LQ+K + DTG Y C +
Sbjct: 51 GRDPRATIQEQGT-----LQIKNLRISDTGTYTCVAT 82
Score = 27.0 bits (60), Expect = 2.2
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 110
D R + T LQ+K + DTG Y C +
Sbjct: 51 GRDPRATIQEQGT-----LQIKNLRISDTGTYTCVAT 82
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 53.5 bits (128), Expect = 8e-09
Identities = 22/155 (14%), Positives = 31/155 (20%), Gaps = 32/155 (20%)
Query: 85 PTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDII 144
P L LK + + C + L + G P D
Sbjct: 137 PLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYG-------PRLDER 189
Query: 145 GGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVS 203
P S C P + + G +
Sbjct: 190 DCPGNWTWPENSQQTPMCQA--WGNPLPELKCLKD-------------------GTFPLP 228
Query: 204 YLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
G Y C + + V VNVL
Sbjct: 229 IGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 263
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 52.2 bits (125), Expect = 1e-08
Identities = 25/148 (16%), Positives = 42/148 (28%), Gaps = 34/148 (22%)
Query: 91 TLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVF 150
+ + D+G Y CQ + + ++D L V + VF
Sbjct: 55 SYFIDAATVNDSGEYRCQTNLS--------------TLSDPVQLEVHIGWLLLQAPRWVF 100
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
E I+L C + + + N Y S I KA
Sbjct: 101 KE-EDPIHLRCHSWKNT-ALHKVTYLQNGKDRKYFHHN--------------SDFHIPKA 144
Query: 211 RPSDNGKYQCNPANSQA----KSVMVNV 234
D+G Y C ++V + +
Sbjct: 145 TLKDSGSYFCRGLVGSKNVSSETVNITI 172
Score = 41.8 bits (98), Expect = 5e-05
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 18/90 (20%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLL 206
+ ++ L C +SPE + W HNE++IS +
Sbjct: 15 QWYSVLEKDSVTLKCQGAYSPEDNST-QWFHNESLISSQASS----------------YF 57
Query: 207 IQKARPSDNGKYQCNPANSQA-KSVMVNVL 235
I A +D+G+Y+C S V + V
Sbjct: 58 IDAATVNDSGEYRCQTNLSTLSDPVQLEVH 87
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 50.4 bits (121), Expect = 1e-08
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
G + ++ V+ P+P + W N + D +R E+ E + L I A
Sbjct: 20 GQDVIMSIRVQGEPKP--VVSWLRNRQPVRPDQRR-----FAEEAEGGLCRLRILAAERG 72
Query: 214 DNGKYQCNPANS 225
D G Y C N
Sbjct: 73 DAGFYTCKAVNE 84
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 50.9 bits (121), Expect = 1e-08
Identities = 17/93 (18%), Positives = 26/93 (27%), Gaps = 5/93 (5%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTV--SY 204
+ + G + L C R W + + + E S
Sbjct: 16 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 75
Query: 205 LLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
L I SD G Y C + ++ S V V
Sbjct: 76 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 108
Score = 25.5 bits (55), Expect = 9.4
Identities = 10/79 (12%), Positives = 22/79 (27%), Gaps = 2/79 (2%)
Query: 48 TGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYEC 107
+ F + D + + + TL + D G+Y C
Sbjct: 33 RTELNVGIDFNWEYPSSKHQHKKLV-NRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTC 91
Query: 108 QVSTTP-HQAHYIYLTVVV 125
S+ + + ++ V
Sbjct: 92 AASSGLMTKKNSTFVRVHE 110
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 52.5 bits (125), Expect = 1e-08
Identities = 36/211 (17%), Positives = 59/211 (27%), Gaps = 35/211 (16%)
Query: 39 QLKYPQHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQ--------RFRVINNPTSDDW 90
YP V + R +I T D+ RFR++ + +
Sbjct: 23 SFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNC 82
Query: 91 TLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVF 150
+L + + +DTG Y +V + + L V
Sbjct: 83 SLSIGDARMEDTGSYFFRVERGRDVKYSY--------QQNKLNLEVTALIEKPDIHFLEP 134
Query: 151 IENGSTINLTCVVRFSPE--PPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQ 208
+E+G L+C + S E PP W G + T S L +
Sbjct: 135 LESGRPTRLSCSLPGSCEAGPPLTFSWT------------GNALSPLDPETTRSSELTLT 182
Query: 209 KARPSDNGKYQCNPANSQA-----KSVMVNV 234
C A ++V +NV
Sbjct: 183 PRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213
Score = 31.0 bits (69), Expect = 0.27
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
RFR++ + + +L + + +DTG Y +V
Sbjct: 68 QGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVE 102
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 49.6 bits (119), Expect = 2e-08
Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 15/108 (13%)
Query: 132 KYLLVPEPET-DIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRG 189
+ L V E I G E G +I ++C +P P I W + + DS
Sbjct: 1 RQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPP--QIMWFKDNETLVEDS--- 55
Query: 190 GVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
++ + G L I++ R D G Y C + +
Sbjct: 56 --GIVLKDGNRN---LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 98
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 51.5 bits (123), Expect = 2e-08
Identities = 28/177 (15%), Positives = 55/177 (31%), Gaps = 19/177 (10%)
Query: 61 RDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIY 120
+ + + +G + + R I + +++ ++ + + D G YEC V A
Sbjct: 37 KMVLTMMSGDMNIWPEYKNRTIFDI-TNNLSIVILALRPSDEGTYECVVLKYEKDAFKRE 95
Query: 121 LTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVR-FSPEPPAYIFWNHNE 179
V + P P P + + C PEP ++ W N
Sbjct: 96 HLAEVTLS---VKADFPTPSISDFEIPT-----SNIRRIICSTSGGFPEP--HLSWLENG 145
Query: 180 AIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVN 233
++ + V+ E VS L + N + C ++ N
Sbjct: 146 EELNAINTT--VSQDPETELYAVSSKLD--FNMTTNHSFMCLIKYGHLRVNQTFNWN 198
Score = 38.8 bits (90), Expect = 6e-04
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 154 GSTINLTCVVRFSPEPPA--YIFW-NHNEAIISYDSQRGGVNVITE-KGETTVS-----Y 204
L+C S E A I+W + +++ S G +N+ E K T
Sbjct: 9 KEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMS--GDMNIWPEYKNRTIFDITNNLS 66
Query: 205 LLIQKARPSDNGKYQC 220
++I RPSD G Y+C
Sbjct: 67 IVILALRPSDEGTYEC 82
Score = 30.0 bits (67), Expect = 0.49
Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 6/92 (6%)
Query: 7 RDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRHRDIHLL 66
+ + + +G + + R I + +++ ++ + + D G YEC V
Sbjct: 37 KMVLTMMSGDMNIWPEYKNRTIFDI-TNNLSIVILALRPSDEGTYECVVLKYEKDAFKRE 95
Query: 67 TTGRYTYTNDQRFRVIN-----NPTSDDWTLQ 93
T + F + PTS+ +
Sbjct: 96 HLAEVTLSVKADFPTPSISDFEIPTSNIRRII 127
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 51.4 bits (123), Expect = 3e-08
Identities = 23/148 (15%), Positives = 41/148 (27%), Gaps = 34/148 (22%)
Query: 91 TLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVF 150
+ + D+G Y CQ + ++D L V + VF
Sbjct: 55 SYFIDAATVDDSGEYRCQTQLS--------------TLSDPVQLEVHIGWLLLQAPRWVF 100
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
E I+L C + + + + + S I KA
Sbjct: 101 KE-EDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHN---------------SDFYIPKA 144
Query: 211 RPSDNGKYQCNPANSQA----KSVMVNV 234
D+G Y C ++V + +
Sbjct: 145 TLKDSGSYFCRGLVGSKNVSSETVQITI 172
Score = 43.3 bits (102), Expect = 2e-05
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 18/90 (20%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLL 206
+ ++ L C +SPE + W HNE++IS +
Sbjct: 15 QWYRVLEKDSVTLKCQGAYSPEDQST-QWFHNESLISSQASS----------------YF 57
Query: 207 IQKARPSDNGKYQCNPANSQA-KSVMVNVL 235
I A D+G+Y+C S V + V
Sbjct: 58 IDAATVDDSGEYRCQTQLSTLSDPVQLEVH 87
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 51.1 bits (122), Expect = 3e-08
Identities = 33/171 (19%), Positives = 59/171 (34%), Gaps = 36/171 (21%)
Query: 70 RYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVST--TPHQAHYIYLTVVVLV 127
TN ++ + +N + ++LQL + +DTG Y Q+ST + + Y + L
Sbjct: 52 EIHVTNPKQGKRLN--FTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQL- 108
Query: 128 INDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQ 187
+ ++F ++LTC V + W
Sbjct: 109 -----------RNIQVTNHSQLFQNMTCELHLTCSVE-DADDNVSFRWEALG-------- 148
Query: 188 RGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
N ++ + TVS+ R S Y C N ++ + SV L
Sbjct: 149 ----NTLSSQPNLTVSWDP----RISSEQDYTCIAENAVSNLSFSVSAQKL 191
Score = 27.6 bits (61), Expect = 3.1
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 16 RYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSF 57
TN ++ + +N + ++LQL + +DTG Y Q+S
Sbjct: 52 EIHVTNPKQGKRLN--FTQSYSLQLSNLKMEDTGSYRAQIST 91
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 49.4 bits (118), Expect = 3e-08
Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 14/97 (14%)
Query: 143 IIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETT 201
I GP + T L+CV SP P I W + ++S R E G
Sbjct: 11 IRQGPVNQTVAVDGTFVLSCVATGSPVP--TILWRKDGVLVSTQDSR---IKQLENGV-- 63
Query: 202 VSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
L I+ A+ D G+Y C P+ S + V
Sbjct: 64 ---LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQ 97
Score = 27.0 bits (60), Expect = 3.0
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 69 GRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTP-HQAHYIYLTVVV 125
G T D R + ++ LQ++Y + DTG Y C ST Y+ V
Sbjct: 46 GVLVSTQDSRIKQ-----LENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQE 98
Score = 26.7 bits (59), Expect = 3.3
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 15 GRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
G T D R + ++ LQ++Y + DTG Y C S
Sbjct: 46 GVLVSTQDSRIKQ-----LENGVLQIRYAKLGDTGRYTCIAS 82
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 48.9 bits (117), Expect = 4e-08
Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 149 VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQ 208
V + +G+ L CVV P P + W ++ + G LL+
Sbjct: 23 VRVVSGAEAELKCVVLGEPPP--VVVWEKGGQQLAASERL----SFPADGAEHG--LLLT 74
Query: 209 KARPSDNGKYQC---NPANSQAKSVMVNVL 235
A P+D G Y C N A + V VL
Sbjct: 75 AALPTDAGVYVCRARNAAGEAYAAAAVTVL 104
Score = 25.4 bits (56), Expect = 7.8
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYEC 53
+R + + L L D G+Y C
Sbjct: 55 AASERLSFPADG--AEHGLLLTAALPTDAGVYVC 86
Score = 25.4 bits (56), Expect = 7.8
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYEC 107
+R + + L L D G+Y C
Sbjct: 55 AASERLSFPADG--AEHGLLLTAALPTDAGVYVC 86
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 48.5 bits (116), Expect = 5e-08
Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 10/90 (11%)
Query: 149 VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQ 208
+ I+ G + V P P + W N + D E + L+ +
Sbjct: 15 MSIDEGRFCRMDFKVSGLPAPD--VSWYLNGRTVQSDD-----LHKMIVSEKGLHSLIFE 67
Query: 209 KARPSDNGKYQC---NPANSQAKSVMVNVL 235
R SD G Y C N A +V ++VL
Sbjct: 68 VVRASDAGAYACVAKNRAGEATFTVQLDVL 97
Score = 26.5 bits (59), Expect = 3.0
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYEC 53
+D ++I + +L + + D G Y C
Sbjct: 47 QSDDLHKMIVSE-KGLHSLIFEVVRASDAGAYAC 79
Score = 26.5 bits (59), Expect = 3.0
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYEC 107
+D ++I + +L + + D G Y C
Sbjct: 47 QSDDLHKMIVSE-KGLHSLIFEVVRASDAGAYAC 79
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 48.9 bits (117), Expect = 5e-08
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 9/102 (8%)
Query: 134 LLVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVN 192
LV II E V ++ GS+ C + SP + W ++ + +
Sbjct: 7 GLVQGRRVHIIEDLEDVDVQEGSSATFRCRI--SPANYEPVHWFLDKTPLHANE-----L 59
Query: 193 VITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAKSVMVNV 234
+ L +++ D+G A Q S + V
Sbjct: 60 NEIDAQPGGYHVLTLRQLALKDSGTIYFE-AGDQRASAALRV 100
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 50.4 bits (120), Expect = 6e-08
Identities = 30/159 (18%), Positives = 40/159 (25%), Gaps = 20/159 (12%)
Query: 80 RVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEP 139
V+ + K G Y C P I L V V
Sbjct: 39 VVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKA------VKSS 92
Query: 140 ETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGE 199
E I G T L C P P W G +
Sbjct: 93 EH---------INEGETAMLVCKSESVP-PVTDWAWYKITDSEDKALMNGSESRFFVSSS 142
Query: 200 TTVSYLLIQKARP-SDNGKYQCNPAN---SQAKSVMVNV 234
S L I+ +D G+Y+CN + S + + V
Sbjct: 143 QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Score = 48.5 bits (115), Expect = 3e-07
Identities = 13/81 (16%), Positives = 22/81 (27%), Gaps = 13/81 (16%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
GS I LTC + S W ++ D+ G +
Sbjct: 13 GSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-------------QKTEFKVDSDD 59
Query: 214 DNGKYQCNPANSQAKSVMVNV 234
G+Y C + + +
Sbjct: 60 QWGEYSCVFLPEPMGTANIQL 80
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 47.7 bits (114), Expect = 9e-08
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 148 EVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLI 207
++ I+ G T NL +P+P W ++ + + + V + T+ +
Sbjct: 11 KIKIKAGFTHNLEVDFIGAPDP--TATWTVGDSGAA-LAPE--LLVDAKSSTTS---IFF 62
Query: 208 QKARPSDNGKYQC---NPANSQAKSVMVNV 234
A+ +D+G Y+ N V V
Sbjct: 63 PSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 26.9 bits (60), Expect = 2.1
Identities = 5/37 (13%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
V ++ + D+G Y+ +V
Sbjct: 44 ALAPELLVDAKS--STTSIFFPSAKRADSGNYKLKVK 78
Score = 26.9 bits (60), Expect = 2.1
Identities = 5/37 (13%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 110
V ++ + D+G Y+ +V
Sbjct: 44 ALAPELLVDAKS--STTSIFFPSAKRADSGNYKLKVK 78
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 48.1 bits (115), Expect = 1e-07
Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 12/103 (11%)
Query: 133 YLLVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGV 191
L V G G+T L C + S P + W + D R
Sbjct: 12 MLTVRALPIKFTEGLRNEEATEGATAVLRCEL--SKMAP--VEWWKGHETLR-DGDR--- 63
Query: 192 NVITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAKSVMVNV 234
+ + + G L I+ D G+Y C + S M+ V
Sbjct: 64 HSLRQDG--ARCELQIRGLVAEDAGEYLCM-CGKERTSAMLTV 103
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 47.7 bits (114), Expect = 1e-07
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 10/90 (11%)
Query: 149 VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQ 208
+ ++ G + C V P P + W + + DS E V L+I+
Sbjct: 19 LTVQEGKLCRMDCKVSGLPTP--DLSWQLDGKPVRPDS-----AHKMLVRENGVHSLIIE 71
Query: 209 KARPSDNGKYQC---NPANSQAKSVMVNVL 235
D G Y C N A + S+ + V
Sbjct: 72 PVTSRDAGIYTCIATNRAGQNSFSLELVVA 101
Score = 26.9 bits (60), Expect = 2.5
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
D +++ +L ++ +D GIY C +
Sbjct: 51 RPDSAHKMLVRENGVH-SLIIEPVTSRDAGIYTCIAT 86
Score = 26.9 bits (60), Expect = 2.5
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 110
D +++ +L ++ +D GIY C +
Sbjct: 51 RPDSAHKMLVRENGVH-SLIIEPVTSRDAGIYTCIAT 86
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 48.0 bits (114), Expect = 1e-07
Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 6/106 (5%)
Query: 133 YLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVN 192
L V P I +G + C +R +P PP I W+ E ++ +
Sbjct: 8 TLTVNGPPI-ISSTQTQHALHGEKGQIKCFIRSTP-PPDRIAWSWKENVLESGTSGRYTV 65
Query: 193 VITEKGETTVSYLLIQKARPSDNG-KYQC---NPANSQAKSVMVNV 234
E +S L I +D Y C N S + + +
Sbjct: 66 ETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 47.4 bits (113), Expect = 1e-07
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 21/96 (21%)
Query: 143 IIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETT 201
++ PE + G T+ LTC V P P I W + +
Sbjct: 13 LVVEPEGGAVAPGGTVTLTCEVPAQPSP--QIHWMKDGVPLPLPPS-------------- 56
Query: 202 VSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
L++ + P D G Y C + ++ +S V++
Sbjct: 57 -PVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 47.3 bits (113), Expect = 1e-07
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 9/85 (10%)
Query: 143 IIGGP--EVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGET 200
++ G E G + C + + + W + +S++ + E G
Sbjct: 3 MVSGQIMHAVGEEGGHVKYVCKIENYDQST-QVTWYFGVRQLE-NSEK--YEITYEDGVA 58
Query: 201 TVSYLLIQKARPSDNGKYQCNPANS 225
L ++ D+G Y+C N
Sbjct: 59 I---LYVKDITKLDDGTYRCKVVND 80
Score = 25.7 bits (57), Expect = 6.6
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
N +++ + L +K D G Y C+V
Sbjct: 44 ENSEKYEITYED--GVAILYVKDITKLDDGTYRCKVV 78
Score = 25.7 bits (57), Expect = 6.6
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 110
N +++ + L +K D G Y C+V
Sbjct: 44 ENSEKYEITYED--GVAILYVKDITKLDDGTYRCKVV 78
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 50.1 bits (120), Expect = 2e-07
Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 21/115 (18%)
Query: 131 GKYL--LVPE----PETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNH-NEAII 182
G+YL + I+ P + I G L C P + + W N ++
Sbjct: 337 GRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRT----PPMSSVKWLLPNGTVL 392
Query: 183 SYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
S+ S+ ++V+ + L SD G Y C N A + S +NV
Sbjct: 393 SHASRHPRISVLND------GTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
Score = 28.2 bits (63), Expect = 2.7
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 14/64 (21%)
Query: 52 ECQVS-----FVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYE 106
+C+ + +L+ + R V+N+ T L + DTG+Y
Sbjct: 373 KCRTPPMSSVKWLLPNGTVLSHA----SRHPRISVLNDGT-----LNFSHVLLSDTGVYT 423
Query: 107 CQVS 110
C V+
Sbjct: 424 CMVT 427
Score = 27.8 bits (62), Expect = 3.1
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ R V+N+ T L + DTG+Y C V+
Sbjct: 396 SRHPRISVLNDGT-----LNFSHVLLSDTGVYTCMVT 427
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 50.1 bits (120), Expect = 2e-07
Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 17/149 (11%)
Query: 90 WTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEV 149
W + ++ + + C TP V+ Y +V
Sbjct: 340 WVFRRRWRLNFNRQQPTCA---TPEFVQGKEFKDFPDVLLPN-YFTCRRARIRDRKAQQV 395
Query: 150 FIENGSTINLTCVVRFSPEPPAYIFWNH-NEAIISYDSQRGGVNVITEKGETTVSYLLIQ 208
F++ G T+ C R +PP I W + ++S S G + V + L ++
Sbjct: 396 FVDEGHTVQFVC--RADGDPPPAILWLSPRKHLVSAKSN-GRLTVFPD------GTLEVR 446
Query: 209 KARPSDNGKYQC---NPANSQAKSVMVNV 234
A+ DNG Y C N + + ++V
Sbjct: 447 YAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 27.0 bits (60), Expect = 6.6
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 17 YTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ ++ R V D TL+++Y Q +D G Y C +
Sbjct: 427 VSAKSNGRLTV-----FPDGTLEVRYAQVQDNGTYLCIAA 461
Score = 27.0 bits (60), Expect = 6.6
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 71 YTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 110
+ ++ R V D TL+++Y Q +D G Y C +
Sbjct: 427 VSAKSNGRLTV-----FPDGTLEVRYAQVQDNGTYLCIAA 461
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 50.1 bits (120), Expect = 2e-07
Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 20/116 (17%)
Query: 131 GKYLL-VPE-----PETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNH-NEAII 182
G+Y+ + + I+ P + + G L C + W N ++
Sbjct: 326 GRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRAS---TSLTSVSWITPNGTVM 382
Query: 183 SYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
++ + + + V+++ L D G Y C N + S +NV
Sbjct: 383 THGAYKVRIAVLSD------GTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVT 432
Score = 28.9 bits (65), Expect = 1.7
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
R V+++ T L +DTG+Y C VS
Sbjct: 386 AYKVRIAVLSDGT-----LNFTNVTVQDTGMYTCMVS 417
Score = 28.9 bits (65), Expect = 1.7
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 110
R V+++ T L +DTG+Y C VS
Sbjct: 386 AYKVRIAVLSDGT-----LNFTNVTVQDTGMYTCMVS 417
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 46.6 bits (111), Expect = 2e-07
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 23/89 (25%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
GST+ L CV SP P + W NE +++++++ ++
Sbjct: 18 GSTLVLQCVAVGSPIP--HYQWFKNELPLTHETKK---------------LYMVPYVDLE 60
Query: 214 DNGKYQCN------PANSQAKSVMVNVLN 236
G Y C+ +S+ ++++ LN
Sbjct: 61 HQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
Score = 26.9 bits (60), Expect = 2.1
Identities = 5/26 (19%), Positives = 7/26 (26%)
Query: 31 PTSDDWTLQLKYPQHKDTGIYECQVS 56
+ Y + G Y C V
Sbjct: 45 THETKKLYMVPYVDLEHQGTYWCHVY 70
Score = 26.9 bits (60), Expect = 2.1
Identities = 5/26 (19%), Positives = 7/26 (26%)
Query: 85 PTSDDWTLQLKYPQHKDTGIYECQVS 110
+ Y + G Y C V
Sbjct: 45 THETKKLYMVPYVDLEHQGTYWCHVY 70
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 46.6 bits (111), Expect = 2e-07
Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 11/98 (11%)
Query: 138 EPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITE 196
+P + P V + GS + W + IS S + + TE
Sbjct: 6 KPVSAFSKKPRSVEVAAGSPAVFEAETE---RAGVKVRWQRGGSDIS-ASNK--YGLATE 59
Query: 197 KGETTVSYLLIQKARPSDNGKYQCNPANSQAKSVMVNV 234
T L +++ P+D G Y A S + V
Sbjct: 60 GTRHT---LTVREVGPADQGSYAVI-AGSSKVKFDLKV 93
Score = 25.8 bits (57), Expect = 6.2
Identities = 11/79 (13%), Positives = 22/79 (27%), Gaps = 19/79 (24%)
Query: 52 ECQVSF----VR--HRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIY 105
E + VR + + +Y + TL ++ D G Y
Sbjct: 29 EAETERAGVKVRWQRGGSDISASNKYGLATEGTRH----------TLTVREVGPADQGSY 78
Query: 106 ECQVSTTPHQAHYIYLTVV 124
++ + L V+
Sbjct: 79 AVIAGSSKVKFD---LKVI 94
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 46.6 bits (111), Expect = 3e-07
Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 13/100 (13%)
Query: 138 EPETDIIGGPE---VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVI 194
I+ + + + LTC + W + + +S+ +
Sbjct: 6 SGPVHILSPQDKVSLTFTTSERVVLTCELS---RVDFPATWYKDGQKVE-ESEL-----L 56
Query: 195 TEKGETTVSYLLIQKARPSDNGKYQCNPANSQAKSVMVNV 234
K + L++ +A+ D+G+++C + V V
Sbjct: 57 VVKMDGRKHRLILPEAKVQDSGEFECR-TEGVSAFFGVTV 95
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 46.5 bits (111), Expect = 3e-07
Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 8/72 (11%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
S P P W + I+ Q G + +KG L I K S
Sbjct: 21 DSVAKFAVKATGEPRPT--AIWTKDGKAIT---QGGKYKLSEDKGGFF---LEIHKTDTS 72
Query: 214 DNGKYQCNPANS 225
D+G Y C NS
Sbjct: 73 DSGLYTCTVKNS 84
Score = 26.1 bits (58), Expect = 5.2
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
T ++++ + + L++ D+G+Y C V
Sbjct: 48 TQGGKYKLSED--KGGFFLEIHKTDTSDSGLYTCTVK 82
Score = 26.1 bits (58), Expect = 5.2
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 110
T ++++ + + L++ D+G+Y C V
Sbjct: 48 TQGGKYKLSED--KGGFFLEIHKTDTSDSGLYTCTVK 82
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 46.8 bits (111), Expect = 3e-07
Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 8/97 (8%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSY-- 204
+ E G +I L C + + + W + +++ + G ++ +
Sbjct: 11 GNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPG 70
Query: 205 --LLIQKARPSDNGKYQC----NPANSQAKSVMVNVL 235
L +Q +D G+Y C P + + + VL
Sbjct: 71 LGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVL 107
Score = 36.0 bits (83), Expect = 0.002
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 87 SDDWTLQLKYPQHKDTGIYECQVSTTPHQAH--YIYLTVVV 125
L L+ DTG Y C T P + I+L V+
Sbjct: 68 GPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLE 108
Score = 27.2 bits (60), Expect = 2.8
Identities = 7/24 (29%), Positives = 8/24 (33%)
Query: 33 SDDWTLQLKYPQHKDTGIYECQVS 56
L L+ DTG Y C
Sbjct: 68 GPGLGLTLQSLTVNDTGEYFCIYH 91
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 49.5 bits (117), Expect = 3e-07
Identities = 21/160 (13%), Positives = 32/160 (20%), Gaps = 30/160 (18%)
Query: 79 FRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPE 138
V P L LK + + C + L + L
Sbjct: 316 NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRV------LYGP 369
Query: 139 PETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKG 198
+ S C +P P + + G
Sbjct: 370 RLDERDCPGNWTWPENSQQTPMCQAWGNPLP--ELKCLKD-------------------G 408
Query: 199 ETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
+ G Y C + + V VNVL
Sbjct: 409 TFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 448
Score = 43.7 bits (102), Expect = 3e-05
Identities = 19/139 (13%), Positives = 33/139 (23%), Gaps = 26/139 (18%)
Query: 101 DTGIYECQVSTTPHQA-HYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINL 159
+ C + Q+ +LTV PE + + G + L
Sbjct: 59 EDSQPMCYSNCPDGQSTAKTFLTVYWT------------PERVELAPLPSWQPVGKNLTL 106
Query: 160 TCVVR-FSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKY 218
C V +P + E + + GE + R +
Sbjct: 107 RCQVEGGAPRANLTVVLLRGEKELKRE---------PAVGEPAEVTTTVLVRRDHHGANF 157
Query: 219 QC---NPANSQAKSVMVNV 234
C Q + N
Sbjct: 158 SCRTELDLRPQGLELFENT 176
Score = 32.5 bits (73), Expect = 0.11
Identities = 25/238 (10%), Positives = 59/238 (24%), Gaps = 43/238 (18%)
Query: 8 DIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTG---IYECQVSFVRHRDIH 64
++ L G + N + QL P+ + C + +
Sbjct: 162 ELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEA 221
Query: 65 LLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVV 124
+ + N+ S ++ + + + T C V TV
Sbjct: 222 QVHLALGDQRLNPTVTYGNDSFSAKASVSVT-AEDEGTQRLTCAVILGNQSQE-TLQTVT 279
Query: 125 VLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISY 184
+ P P + + + G+ + + C P + + +
Sbjct: 280 IYS--------FPAP---NVILTKPEVSEGTEVTVKCEAH--PRAKVTLNGVPAQPLGPR 326
Query: 185 DSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQ----AKSVMVNVL 235
+ LL++ + + C Q ++ + VL
Sbjct: 327 ------------------AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL 366
Score = 30.6 bits (68), Expect = 0.51
Identities = 8/91 (8%), Positives = 28/91 (30%), Gaps = 18/91 (19%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLL 206
+V + G ++ +TC +P ++ ++ ++ + +
Sbjct: 7 SKVILPRGGSVLVTCSTS-CDQPM----------LLGIETPLPKKELL----LPGNNRKV 51
Query: 207 IQKARPSDNGKYQC---NPANSQAKSVMVNV 234
+ + ++ + C P + V
Sbjct: 52 YELSNVQEDSQPMCYSNCPDGQSTAKTFLTV 82
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 45.8 bits (109), Expect = 5e-07
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 5/75 (6%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
G + + V E A + W N ++ + + G L+
Sbjct: 23 GDRVEMAVEVS---EEGAQVMWMKNGVELTREDSFKARYRFKKDG--KRHILIFSDVVQE 77
Query: 214 DNGKYQCNPANSQAK 228
D G+YQ Q +
Sbjct: 78 DRGRYQVITNGGQCE 92
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 45.9 bits (109), Expect = 5e-07
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 6/88 (6%)
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
+ + V+ +P+P + W +N AI++ +S+ + L +
Sbjct: 13 PTSDHHWCIPFTVKGNPKP--ALQWFYNGAILN-ESKYICTKIHVTNHTEYHGCLQLDNP 69
Query: 211 RPSDNGKYQC---NPANSQAKSVMVNVL 235
+NG Y N K + + +
Sbjct: 70 THMNNGDYTLIAKNEYGKDEKQISAHFM 97
Score = 28.6 bits (64), Expect = 0.58
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 3/40 (7%)
Query: 20 TNDQRFRV---INNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ + N T LQL P H + G Y
Sbjct: 43 NESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAK 82
Score = 28.6 bits (64), Expect = 0.58
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 3/40 (7%)
Query: 74 TNDQRFRV---INNPTSDDWTLQLKYPQHKDTGIYECQVS 110
+ + N T LQL P H + G Y
Sbjct: 43 NESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAK 82
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 45.8 bits (109), Expect = 5e-07
Identities = 23/72 (31%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
G L C VR +P P I W N I Y V L IQ A P
Sbjct: 26 GQDFVLQCSVRGTPVP--RITWLLNGQPIQYARSTCEAGVAE---------LHIQDALPE 74
Query: 214 DNGKYQCNPANS 225
D+G Y C N+
Sbjct: 75 DHGTYTCLAENA 86
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 47.9 bits (114), Expect = 5e-07
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 9/91 (9%)
Query: 148 EVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLI 207
V+ G+ +N+TC P A I W + ++ + I + SYL +
Sbjct: 27 AVYTWEGNQVNITC--EVFAYPSATISWFRDGQLLPSSNYS----NIKIYNTPSASYLEV 80
Query: 208 QKARPSDNGKYQC---NPANSQAKSVMVNVL 235
+D G Y C N ++ ++
Sbjct: 81 TPDSENDFGNYNCTAVNRIGQESLEFILVQA 111
Score = 31.3 bits (71), Expect = 0.19
Identities = 20/113 (17%), Positives = 33/113 (29%), Gaps = 29/113 (25%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVVVLVINDGK 132
+N ++ N P++ L++ D G Y C Q L
Sbjct: 62 SNYSNIKIYNTPSAS--YLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQAD------- 112
Query: 133 YLLVPEPETDIIGGPEVF-IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISY 184
P P + +E S+ T V+F + P I+ Y
Sbjct: 113 ---TPSS-------PSIDQVEPYSS---TAQVQF--DEPEA---TGGVPILKY 147
Score = 29.8 bits (67), Expect = 0.53
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+N ++ N P++ L++ D G Y C
Sbjct: 62 SNYSNIKIYNTPSAS--YLEVTPDSENDFGNYNCTAV 96
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 48.6 bits (115), Expect = 6e-07
Identities = 25/188 (13%), Positives = 45/188 (23%), Gaps = 26/188 (13%)
Query: 52 ECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVST 111
CQV + T + + + + C
Sbjct: 179 RCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLG----LTLANVTSDLNRKNVTCWAEN 234
Query: 112 TPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPA 171
++V V V P + V P P
Sbjct: 235 D---VGRAEVSVQVNVS-------FPASVQLHTA------VEMHHWCIPFSVDGQPAPS- 277
Query: 172 YIFWNHNEAIISYDSQRGGVNVITEKGETTV-SYLLIQKARPSDNGKYQC---NPANSQA 227
+ W N ++++ S + ET L + + +NG Y NP +
Sbjct: 278 -LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS 336
Query: 228 KSVMVNVL 235
S+M +
Sbjct: 337 ASIMAAFM 344
Score = 47.0 bits (111), Expect = 2e-06
Identities = 17/91 (18%), Positives = 24/91 (26%), Gaps = 12/91 (13%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLL 206
P ++ G + L C V W E S + G ++ L
Sbjct: 166 PNASVDVGDDVLLRCQVEGRGLEQ--AGWILTELEQSATVMKSGG-------LPSLGLTL 216
Query: 207 IQKARPSDNGKYQC---NPANSQAKSVMVNV 234
+ C N SV VNV
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 247
Score = 30.1 bits (67), Expect = 0.64
Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 4/79 (5%)
Query: 36 WTLQLKYPQHKDTGIYECQVSFVRHRDIHLLTTGR----YTYTNDQRFRVINNPTSDDWT 91
++QL V + L G ++ + N T
Sbjct: 251 ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGC 310
Query: 92 LQLKYPQHKDTGIYECQVS 110
L+L P H + G Y +
Sbjct: 311 LRLNQPTHVNNGNYTLLAA 329
Score = 29.7 bits (66), Expect = 0.69
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 18 TYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
++ + N T L+L P H + G Y +
Sbjct: 291 SFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 329
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 48.3 bits (115), Expect = 6e-07
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 12/86 (13%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
G T+ + C + ++ + + + G V+V L +K +
Sbjct: 261 GDTLTIRCDTKQQGMT--KVWVSPSNEQVLSQGSNGSVSVRN-------GDLFFKKVQVE 311
Query: 214 DNGKYQC---NPANSQAKSVMVNVLN 236
D G Y C ++ SV + V N
Sbjct: 312 DGGVYTCYAMGETFNETLSVELKVYN 337
Score = 27.9 bits (62), Expect = 3.0
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 4/64 (6%)
Query: 47 DTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYE 106
DT C + + + + V + + L K Q +D G+Y
Sbjct: 262 DTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSV----SVRNGDLFFKKVQVEDGGVYT 317
Query: 107 CQVS 110
C
Sbjct: 318 CYAM 321
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 45.6 bits (108), Expect = 6e-07
Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 16/102 (15%)
Query: 136 VPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVIT 195
+P + + + G + L C +R + I W + + +
Sbjct: 6 QAQPWGVPVEVESLLVHPGDLLQLRCRLR---DDVQSINWLRDGVQLV----------ES 52
Query: 196 EKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
+ T + ++ + P+D+G Y C +P+ S VNV
Sbjct: 53 NRTRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 29.8 bits (67), Expect = 0.25
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 7/51 (13%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTV 123
R R+ ++++ D+G+Y C S+ Y + V
Sbjct: 50 VESNRTRITGE------EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 27.1 bits (60), Expect = 2.0
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 6/37 (16%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
R R+ ++++ D+G+Y C S
Sbjct: 50 VESNRTRITGE------EVEVRDSIPADSGLYACVTS 80
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 45.5 bits (108), Expect = 7e-07
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
G++ L+C V + + W + +S S+ + G T L++Q+A +
Sbjct: 26 GASATLSCEVA---QAQTEVTWYKDGKKLSSSSKV----RVEAVGCT--RRLVVQQAGQA 76
Query: 214 DNGKYQCNPANSQAKSVMVNV 234
+ G+Y C A Q S + V
Sbjct: 77 EAGEYSCE-AGGQQLSFRLQV 96
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 45.3 bits (108), Expect = 7e-07
Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 10/84 (11%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
GS + V P+P W N I + E V L+I+
Sbjct: 20 GSDAHFRVRVVGKPDP--ECEWYKNGVKIERSD-----RIYWYWPEDNVCELVIRDVTGE 72
Query: 214 DNGKYQC---NPANSQAKSVMVNV 234
D+ N A + + V
Sbjct: 73 DSASIMVKAINIAGETSSHAFLLV 96
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 45.0 bits (107), Expect = 9e-07
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 10/83 (12%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHN-EAIISYDSQRGGVNVITEKGETTVSYLLIQKARP 212
G + L C V E A + W N E II R + E L+I+ A
Sbjct: 22 GERVELECEVS---EDDANVKWFKNGEEIIPGPKSR-----YRIRVEGKKHILIIEGATK 73
Query: 213 SDNGKYQCNPANSQAK-SVMVNV 234
+D +Y Q+ + V++
Sbjct: 74 ADAAEYSVMTTGGQSSAKLSVDL 96
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 47.6 bits (113), Expect = 1e-06
Identities = 27/161 (16%), Positives = 42/161 (26%), Gaps = 22/161 (13%)
Query: 71 YTYTNDQRFRVINNPTS-----DDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVV 125
Y RV S D+++ + D G Y C
Sbjct: 50 YNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGT 109
Query: 126 LVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVR-FSPEPPAYIFWNHNEAIISY 184
+ K P ++ GP T++ TC FSP W N +S
Sbjct: 110 ELSVRAK------PSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLK-WFKNGNELS- 161
Query: 185 DSQRGGVNVITEKGE----TTVSYLLIQKARPSDNGKYQCN 221
+ GE + S + R + + C
Sbjct: 162 ----DFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICE 198
Score = 33.8 bits (77), Expect = 0.041
Identities = 25/178 (14%), Positives = 55/178 (30%), Gaps = 24/178 (13%)
Query: 48 TGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYEC 107
G ++ ++ + L+ + + S T ++ + C
Sbjct: 142 HGFSPRDITLKWFKNGNELSDFQTNVDPVGE----SVSYSIHSTAKVVLTREDVHSQVIC 197
Query: 108 QVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVR-FS 166
+V+ Q + T + L + + + +N+TC VR F
Sbjct: 198 EVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP---------VRAENQVNVTCQVRKFY 248
Query: 167 PEPPAYIFWNHNEAIISYDSQRGGVNVITEKGE----TTVSYLLIQKARPSDNGKYQC 220
P+ + W N + R + + +S+LL+ + D+ K C
Sbjct: 249 PQR-LQLTWLENGNVS-----RTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTC 300
Score = 27.6 bits (61), Expect = 3.8
Identities = 19/83 (22%), Positives = 25/83 (30%), Gaps = 9/83 (10%)
Query: 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHN-----EAIISYDSQRGGVNVI---TEK 197
V + G + L C V S P I W E I + + K
Sbjct: 10 DKSVSVAAGESAILHCTVT-SLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTK 68
Query: 198 GETTVSYLLIQKARPSDNGKYQC 220
E + I P+D G Y C
Sbjct: 69 RENMDFSISISNITPADAGTYYC 91
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 45.2 bits (107), Expect = 1e-06
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 159 LTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKY 218
+ VVR +P P + W HN + ++GE + LL K +NG Y
Sbjct: 25 IEFVVRGNPPP--TLHWLHNGQPLRESKII--HVEYYQEGEISEGCLLFNKPTHYNNGNY 80
Query: 219 QC---NPANSQAKSVMVNVL 235
NP + +++ + L
Sbjct: 81 TLIAKNPLGTANQTINGHFL 100
Score = 29.0 bits (65), Expect = 0.52
Identities = 6/39 (15%), Positives = 10/39 (25%), Gaps = 2/39 (5%)
Query: 20 TNDQRFRVINNPTSD--DWTLQLKYPQHKDTGIYECQVS 56
+ V + + L P H + G Y
Sbjct: 47 RESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAK 85
Score = 29.0 bits (65), Expect = 0.52
Identities = 6/39 (15%), Positives = 10/39 (25%), Gaps = 2/39 (5%)
Query: 74 TNDQRFRVINNPTSD--DWTLQLKYPQHKDTGIYECQVS 110
+ V + + L P H + G Y
Sbjct: 47 RESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAK 85
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 46.1 bits (109), Expect = 1e-06
Identities = 22/175 (12%), Positives = 47/175 (26%), Gaps = 43/175 (24%)
Query: 63 IHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLT 122
+ L + + + RV + S +L + D YE + + L
Sbjct: 35 VAELENSEFRAFSSFKNRVYLDTVS--GSLTIYNLTSSDEDEYEMESPNITDTMKFF-LY 91
Query: 123 VVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAII 182
V +V +P + S LTC V + + + +
Sbjct: 92 V---------LEMVSKP---------MIYWECSNATLTCEVLEGTDVE--LKLYQGKEHL 131
Query: 183 SYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
Q + + ++C N + +++ +VN
Sbjct: 132 RSLRQ-----------------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 169
Score = 33.4 bits (76), Expect = 0.035
Identities = 10/86 (11%), Positives = 22/86 (25%), Gaps = 7/86 (8%)
Query: 148 EVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSY--- 204
+++ + S P + W + ++ + K +
Sbjct: 4 QIYGVVYGNVTFHV---PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60
Query: 205 -LLIQKARPSDNGKYQCNPANSQAKS 229
L I SD +Y+ N
Sbjct: 61 SLTIYNLTSSDEDEYEMESPNITDTM 86
Score = 26.8 bits (59), Expect = 5.2
Identities = 12/123 (9%), Positives = 26/123 (21%), Gaps = 23/123 (18%)
Query: 9 IHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRHRDIHLLT- 67
+ L + + + RV + S +L + D YE + + L
Sbjct: 35 VAELENSEFRAFSSFKNRVYLDTVS--GSLTIYNLTSSDEDEYEMESPNITDTMKFFLYV 92
Query: 68 ----------------TGRYTYTNDQRFRVI----NNPTSDDWTLQLKYPQHKDTGIYEC 107
T + + Y ++C
Sbjct: 93 LEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKC 152
Query: 108 QVS 110
+
Sbjct: 153 KAV 155
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 46.0 bits (109), Expect = 1e-06
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 7/75 (9%)
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
+ GS C V P+P + W ++ + + + E L I +
Sbjct: 53 VVEGSAARFDCKVEGYPDP--EVMWFKDDNPVKESR-----HFQIDYDEEGNCSLTISEV 105
Query: 211 RPSDNGKYQCNPANS 225
D+ KY C NS
Sbjct: 106 CGDDDAKYTCKAVNS 120
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 44.6 bits (106), Expect = 1e-06
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 8/72 (11%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
G V+ P + W HN + S ++ G T L I
Sbjct: 23 GQNTRFILNVQSKPTA--EVKWYHNGVELQESS---KIHYTNTSGVLT---LEILDCHTD 74
Query: 214 DNGKYQCNPANS 225
D+G Y+ N
Sbjct: 75 DSGTYRAVCTNY 86
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 44.3 bits (105), Expect = 2e-06
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 10/88 (11%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLL 206
P ++ G + + +P + W N I S + + KG L
Sbjct: 16 PAYQVDKGGRVRFVVELA---DPKLEVKWYKNGQEIR-PSTK---YIFEHKG--CQRILF 66
Query: 207 IQKARPSDNGKYQCNPANSQAKSVMVNV 234
I + +D+ +Y A + S + V
Sbjct: 67 INNCQMTDDSEYYVT-AGDEKCSTELFV 93
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 44.7 bits (106), Expect = 2e-06
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 9/84 (10%)
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
+ G I LT + + A + W N I + + G L I +
Sbjct: 28 VSKGHKIRLTVELA---DHDAEVKWLKNGQEIQMSGSK---YIFESIG--AKRTLTISQC 79
Query: 211 RPSDNGKYQCNPANSQAKSVMVNV 234
+D+ YQC + S + V
Sbjct: 80 SLADDAAYQCV-VGGEKCSTELFV 102
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 44.7 bits (106), Expect = 2e-06
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 12/96 (12%)
Query: 143 IIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETT 201
I+ P + + G + +C P P + W ++S ++ V T K ++T
Sbjct: 17 ILTKPRSMTVYEGESARFSCDTDGEPVPT--VTWLRKGQVLSTSAR---HQVTTTKYKST 71
Query: 202 VSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
I + SD G Y N Q + +
Sbjct: 72 ---FEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 25.8 bits (57), Expect = 5.9
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ R +V T ++ Q D G Y V
Sbjct: 56 STSARHQVTTTK--YKSTFEISSVQASDEGNYSVVVE 90
Score = 25.8 bits (57), Expect = 5.9
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 110
+ R +V T ++ Q D G Y V
Sbjct: 56 STSARHQVTTTK--YKSTFEISSVQASDEGNYSVVVE 90
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 43.9 bits (104), Expect = 2e-06
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 16/84 (19%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
G + L C +R + I W + ++ + + T + +Q + P+
Sbjct: 18 GDLLQLRCRLR---DDVQSINWLRDGVQLA----------ESNRTRITGEEVEVQDSVPA 64
Query: 214 DNGKYQC---NPANSQAKSVMVNV 234
D+G Y C +P+ S VNV
Sbjct: 65 DSGLYACVTSSPSGSDTTYFSVNV 88
Score = 30.1 bits (68), Expect = 0.19
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 7/52 (13%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVV 124
R R+ ++++ D+G+Y C S+ Y + V
Sbjct: 44 AESNRTRITGE------EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89
Score = 27.7 bits (62), Expect = 1.3
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 6/37 (16%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
R R+ ++++ D+G+Y C S
Sbjct: 44 AESNRTRITGE------EVEVQDSVPADSGLYACVTS 74
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 43.8 bits (104), Expect = 3e-06
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
G + L C + + P + W + I SQ+ +V+ E L+I+ A
Sbjct: 23 GEDVELRCELSRAGTP---VHWLKDRKAIR-KSQK--YDVVCEGTMAM---LVIRGASLK 73
Query: 214 DNGKYQCNPANSQAK-SVMVNV 234
D G+Y C S++ S+ V
Sbjct: 74 DAGEYTCEVEASKSTASLHVEE 95
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 43.5 bits (103), Expect = 3e-06
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 11/83 (13%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
G I L C + S P W N + +S R + + + L+I A
Sbjct: 22 GKEICLKCEI--SENIP--GKWTKNGLPVQ-ESDR-----LKVVQKGRIHKLVIANALTE 71
Query: 214 DNGKYQC-NPANSQAKSVMVNVL 235
D G Y A + V+V+
Sbjct: 72 DEGDYVFAPDAYNVTLPAKVHVI 94
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 43.5 bits (103), Expect = 3e-06
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
G + + CV+ W + S+ T +G L++++A PS
Sbjct: 23 GESCSFECVLS-HESASDPAMWTVGGKTVGSSSRF----QATRQG--RKYILVVREAAPS 75
Query: 214 DNGKYQCNPANSQAK 228
D G+ + +K
Sbjct: 76 DAGEVVFSVRGLTSK 90
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 43.3 bits (102), Expect = 4e-06
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 19/86 (22%)
Query: 154 GSTINLTCVVRFSPEPPAYIFW--NHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKAR 211
G+ + C + S P + W HN + S G+ L I+ +
Sbjct: 25 GADVTFICTAK-SKSPAYTLVWTRLHNGKLPSRAMDFNGI-------------LTIRNVQ 70
Query: 212 PSDNGKYQC---NPANSQAKSVMVNV 234
PSD G Y C N + ++V
Sbjct: 71 PSDAGTYVCTGSNMFAMDQGTATLHV 96
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 42.3 bits (100), Expect = 8e-06
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
G L CV+ P + W + ++ + ++ E + L+++ RP
Sbjct: 23 GGAATLRCVLSSVAAP---VKWCYGNNVLR-PGDK--YSLRQEGA---MLELVVRNLRPQ 73
Query: 214 DNGKYQCNPANSQAKSVMVNV 234
D+G+Y C+ Q S + V
Sbjct: 74 DSGRYSCS-FGDQTTSATLTV 93
Score = 25.7 bits (57), Expect = 6.5
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 16/70 (22%)
Query: 46 KDTGIYECQVSFV------RHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQH 99
C +S V + + L +Y+ + L ++ +
Sbjct: 23 GGAATLRCVLSSVAAPVKWCYGNNVLRPGDKYSLRQEGAML----------ELVVRNLRP 72
Query: 100 KDTGIYECQV 109
+D+G Y C
Sbjct: 73 QDSGRYSCSF 82
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 43.8 bits (103), Expect = 8e-06
Identities = 22/175 (12%), Positives = 47/175 (26%), Gaps = 42/175 (24%)
Query: 63 IHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLT 122
+ + F ++ N L++K D+G Y V +T L
Sbjct: 39 VAEFKRKMKPFLKSGAFEILAN-----GDLKIKNLTRDDSGTYNVTVYST---NGTRILN 90
Query: 123 VVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAII 182
+ + +V +P S LTC V + + + +
Sbjct: 91 KALDLRI---LEMVSKPMIYW---------ECSNATLTCEVLEGTDVE--LKLYQGKEHL 136
Query: 183 SYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
Q + + ++C N + +++ +VN
Sbjct: 137 RSLRQ-----------------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
Score = 35.3 bits (81), Expect = 0.008
Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 1/84 (1%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSY-LLIQKARP 212
G INL + + W +++ ++ + + E + L I+
Sbjct: 11 GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70
Query: 213 SDNGKYQCNPANSQAKSVMVNVLN 236
D+G Y ++ ++ L+
Sbjct: 71 DDSGTYNVTVYSTNGTRILNKALD 94
Score = 28.8 bits (64), Expect = 1.2
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
Query: 9 IHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ + F ++ N L++K D+G Y V
Sbjct: 39 VAEFKRKMKPFLKSGAFEILAN-----GDLKIKNLTRDDSGTYNVTVY 81
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 42.4 bits (100), Expect = 9e-06
Identities = 19/83 (22%), Positives = 24/83 (28%), Gaps = 10/83 (12%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
C V + W N + S+R IT L+I RP
Sbjct: 23 AEQAVFKCEVS---DEKVTGKWYKNGVEVR-PSKR-----ITISHVGRFHKLVIDDVRPE 73
Query: 214 DNGKYQCNPANSQAK-SVMVNVL 235
D G Y P S +N L
Sbjct: 74 DEGDYTFVPDGYALSLSAKLNFL 96
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 43.1 bits (101), Expect = 1e-05
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 9/79 (11%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQR-------GGVNVITEKGETTVSYLL 206
G ++ L C SP P I W + + V++ + S +
Sbjct: 36 GGSVELHCEAVGSPVP--EIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTIS 93
Query: 207 IQKARPSDNGKYQCNPANS 225
I D G Y+C +N
Sbjct: 94 IDTLVEEDTGTYECRASND 112
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 42.3 bits (99), Expect = 1e-05
Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 8/105 (7%)
Query: 138 EPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAY-IFWNHNEAIISYDSQRGGVNVIT 195
+P + P+ + G +I + V + + W + + + +
Sbjct: 2 DPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHD 61
Query: 196 EKGETTVSY---LLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
+ Y L I A+P+ G Y+C + + V
Sbjct: 62 SYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 25.3 bits (55), Expect = 9.0
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 36 WTLQLKYPQHKDTGIYECQVS 56
+ L + Q TG Y C+VS
Sbjct: 72 FELHITDAQPAFTGSYRCEVS 92
Score = 25.3 bits (55), Expect = 9.0
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 90 WTLQLKYPQHKDTGIYECQVS 110
+ L + Q TG Y C+VS
Sbjct: 72 FELHITDAQPAFTGSYRCEVS 92
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 41.9 bits (99), Expect = 1e-05
Identities = 14/81 (17%), Positives = 21/81 (25%), Gaps = 10/81 (12%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
T TC P A + W + S + E L I +
Sbjct: 23 KGTAVFTCKTE---HPAATVTWRKGLLELR-ASGK--HQPSQEGL---TLRLTISALEKA 73
Query: 214 DNGKYQCNPANSQAKSVMVNV 234
D+ Y C+ + V
Sbjct: 74 DSDTYTCD-IGQAQSRAQLLV 93
Score = 26.5 bits (59), Expect = 3.3
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 19/84 (22%)
Query: 46 KDTGIYECQVS----FVR--HRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQH 99
K T ++ C+ V + L +G++ + + L + +
Sbjct: 23 KGTAVFTCKTEHPAATVTWRKGLLELRASGKHQPSQEGLTL----------RLTISALEK 72
Query: 100 KDTGIYECQVSTTPHQAHYIYLTV 123
D+ Y C + +A L V
Sbjct: 73 ADSDTYTCDIGQAQSRAQ---LLV 93
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 43.8 bits (103), Expect = 1e-05
Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 13/158 (8%)
Query: 65 LLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVV 124
L T N + ++ TL ++ Q +D+G Y C T Y T
Sbjct: 46 LFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTWHISEGYELGT-D 104
Query: 125 VLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVR-FSPEPPAYIFWNHNEAIIS 183
LV G + V EP++ P VFI T N+ C+V+ F P+ I ++ I+
Sbjct: 105 KLVFGQGTQVTV-EPKSQPPAKPSVFIMKNGT-NVACLVKDFYPK-EVTISLRSSKKIVE 161
Query: 184 YDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQCN 221
+D ++ Y ++ + D+ C+
Sbjct: 162 FDPA-----IVISPSGK---YSAVKLGQYGDSNSVTCS 191
Score = 31.9 bits (72), Expect = 0.12
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 12/84 (14%)
Query: 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFW---NHNEA------IISYDSQRGGVNVITE 196
+ + G+ L C + + W N + + S + G + +
Sbjct: 8 PSALSLHEGTDSALRCNFTTTM---RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFD 64
Query: 197 KGETTVSYLLIQKARPSDNGKYQC 220
E S L I+ A+ D+G Y C
Sbjct: 65 SKERRYSTLHIRDAQLEDSGTYFC 88
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 43.2 bits (101), Expect = 2e-05
Identities = 20/133 (15%), Positives = 33/133 (24%), Gaps = 19/133 (14%)
Query: 91 TLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVVVLVINDGKYLLVPEPETDIIGGPEV 149
TL + + Y C + + I + + D
Sbjct: 55 TLTMNPVSFGNEHSYLCTATCESRKLEKGIQVE-------------IYSFPKDPEIHLSG 101
Query: 150 FIENGSTINLTCVVR-FSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQ 208
+E G I + C V P I + ++ + K T S +
Sbjct: 102 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEF---LEDADRKSLETKSLEVTF 158
Query: 209 KARPSDNGK-YQC 220
D GK C
Sbjct: 159 TPVIEDIGKVLVC 171
Score = 41.7 bits (97), Expect = 7e-05
Identities = 17/91 (18%), Positives = 26/91 (28%), Gaps = 14/91 (15%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLL 206
+ G +++LTC P W DS G E T S L
Sbjct: 9 SRYLAQIGDSVSLTCSTTGCESPF--FSWRTQI-----DSPLNGK----VTNEGTTSTLT 57
Query: 207 IQKARPSDNGKYQC---NPANSQAKSVMVNV 234
+ + Y C + K + V +
Sbjct: 58 MNPVSFGNEHSYLCTATCESRKLEKGIQVEI 88
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 41.6 bits (98), Expect = 2e-05
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 11/81 (13%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
G+T L C + S P + W + D R + + G T L I +
Sbjct: 23 GATATLQCEL--SKVAP--VEWKKGPETLR-DGGR---YSLKQDG--TRCELQIHDLSVA 72
Query: 214 DNGKYQCNPANSQAKSVMVNV 234
D G+Y C + S + V
Sbjct: 73 DAGEYSCM-CGQERTSATLTV 92
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 41.9 bits (98), Expect = 2e-05
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 7/93 (7%)
Query: 149 VFIENGSTINLTCVVRFSPEPPA-YIFWNHNEAIISYDSQRGGVNVITEKGETTVSY--- 204
++ G I V+ I W + + + + + Y
Sbjct: 17 GTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFE 76
Query: 205 LLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
+ I KA+ + G Y+C + S + V
Sbjct: 77 MQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV 109
Score = 26.1 bits (57), Expect = 5.9
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 35 DWTLQLKYPQHKDTGIYECQVS 56
+ +Q+ + G Y C+V+
Sbjct: 74 TFEMQIIKAKDNFAGNYRCEVT 95
Score = 26.1 bits (57), Expect = 5.9
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 89 DWTLQLKYPQHKDTGIYECQVS 110
+ +Q+ + G Y C+V+
Sbjct: 74 TFEMQIIKAKDNFAGNYRCEVT 95
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 43.7 bits (103), Expect = 3e-05
Identities = 22/153 (14%), Positives = 45/153 (29%), Gaps = 20/153 (13%)
Query: 91 TLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGK-----YLLVPEPETDIIG 145
+L + + +D Y C + ++ V V+ K L P E
Sbjct: 71 SLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEEL--- 127
Query: 146 GPEVFIENGSTINLTCVVR-FSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSY 204
+ L C++ F P W + + + + + + SY
Sbjct: 128 -------QANKATLVCLISDFYPGAVTVA-WKADGSPVKAGVETTKPSKQSNNKYAASSY 179
Query: 205 LLIQKARPSDNGKYQCN---PANSQAKSVMVNV 234
L + + + Y C ++ K+V
Sbjct: 180 LSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTE 212
Score = 29.4 bits (66), Expect = 0.96
Identities = 26/143 (18%), Positives = 39/143 (27%), Gaps = 31/143 (21%)
Query: 84 NPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDI 143
S T Y C V+ H+ + V ++ L P D
Sbjct: 284 TVPSSSL----------GTQTYICNVN---HKPSNTKVDKRVEPLSLPSVFLFPPKPKDT 330
Query: 144 IGGPEVFIENGSTINLTCVVR-FSPEPPA-YIFWNHNEAIISYDSQRGGVNVITEKGE-- 199
+ T +TCVV S E P W + + E+
Sbjct: 331 L-------MISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVH-----NAKTKPREQQYNS 378
Query: 200 --TTVSYLLIQKARPSDNGKYQC 220
VS L + D +Y+C
Sbjct: 379 TYRVVSVLTVLHQNWLDGKEYKC 401
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 42.8 bits (100), Expect = 3e-05
Identities = 23/158 (14%), Positives = 47/158 (29%), Gaps = 24/158 (15%)
Query: 81 VINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPE 140
+ + T+ L++ D+G Y C + + +
Sbjct: 74 LRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFY--------------EKALVELKVAA 119
Query: 141 TDIIGGPEVFIENGSTINLTCV-VRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGE 199
+V I+L C + P+P I W++N+ + V G
Sbjct: 120 LGSDLHVDVKGYKDGGIHLECRSTGWYPQP--QIQWSNNKGENIPTVEA--PVVADGVGL 175
Query: 200 TTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
V+ +I R S C + K+ +++
Sbjct: 176 YAVAASVI--MRGSSGEGVSCTIRSSLLGLEKTASISI 211
Score = 28.9 bits (64), Expect = 1.2
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 27 VINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ + T+ L++ D+G Y C
Sbjct: 74 LRDGITAGKAALRIHNVTASDSGKYLCYFQ 103
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 41.3 bits (97), Expect = 3e-05
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 13/102 (12%)
Query: 136 VPEPETDII---GGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVN 192
+ + I+ G V + LTC + P A + W + + +S
Sbjct: 7 GTDVSSWIVYPSGKVYVAAVRLERVVLTCEL---CRPWAEVRWTKDGEEVV-ESPA---L 59
Query: 193 VITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAKSVMVNV 234
++ ++ TV L++ + D+G+Y C + ++ S V V
Sbjct: 60 LLQKED--TVRRLVLPAVQLEDSGEYLCE-IDDESASFTVTV 98
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 42.5 bits (99), Expect = 5e-05
Identities = 20/139 (14%), Positives = 42/139 (30%), Gaps = 20/139 (14%)
Query: 91 TLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVF 150
TL + ++ G Y+ V T + V ++ + + ++
Sbjct: 53 TLTVADATSENAGSYKVTVQDT---DTMTSVESEVFLMEEAELIVNITEPQHFY------ 103
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
+ + + + L V+FS + + Y +G + T + IQ+
Sbjct: 104 VSSQTDVELHATVKFSGGKTPADNYE-----LHYSWSKGEDVI------DTTQDITIQEF 152
Query: 211 RPSDNGKYQCNPANSQAKS 229
NG Y S
Sbjct: 153 TADKNGVYTVKVWGESEDS 171
Score = 39.0 bits (90), Expect = 7e-04
Identities = 22/153 (14%), Positives = 38/153 (24%), Gaps = 30/153 (19%)
Query: 83 NNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETD 142
+ + ++ G+Y +V + T ++ + D
Sbjct: 138 EDVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIM----------LATMNVD 187
Query: 143 IIGGPEVFIENGSTINLTCVVRFS--------PEPPAYIFWNHNE-------AIISYDSQ 187
+ G+ I+L VV P W I S +
Sbjct: 188 QDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGE 247
Query: 188 RGGVNVITEKGETTVSYLLIQKARPSDNGKYQC 220
IT G L + A D K+ C
Sbjct: 248 ALEGFSITPDGH-----LFKESATYDDTAKFWC 275
Score = 27.5 bits (60), Expect = 3.6
Identities = 10/67 (14%), Positives = 17/67 (25%), Gaps = 14/67 (20%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
G LT V P+ ++Y + T + A
Sbjct: 17 GDGFTLTATVAGDEPLPS---------NLTYTWTKDDQPHENNTATLT-----VADATSE 62
Query: 214 DNGKYQC 220
+ G Y+
Sbjct: 63 NAGSYKV 69
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 42.7 bits (99), Expect = 6e-05
Identities = 28/194 (14%), Positives = 48/194 (24%), Gaps = 24/194 (12%)
Query: 35 DWTLQLKYPQHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQL 94
+W Q H + + +D P + + T L
Sbjct: 205 EWRRQHLGKGHL---LLAATPGLNGQMPAAQEGAVAFAAWDDDEP---WGPWTGNGTFWL 258
Query: 95 KYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENG 154
Q G Y + Q +T+ + V K L+P G
Sbjct: 259 PRVQPFQEGTYLATIHLPYLQG---QVTLELAVYKPPKVSLMPATLARAAPGEA------ 309
Query: 155 STINLTCVV-RFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGE------TTVSYLLI 207
L C+V F P + W + G ++ + +L
Sbjct: 310 -PPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQP 368
Query: 208 QKARPSDNG-KYQC 220
+G +Y C
Sbjct: 369 PPVTTEQHGARYAC 382
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 39.6 bits (93), Expect = 7e-05
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 9/75 (12%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
G T + + EP + W ++ S I E G L++ +
Sbjct: 20 GETAHFEIEL---SEPDVHGQWKLKGQPLA-ASPD---CEIIEDG--KKHILILHNCQLG 70
Query: 214 DNGKYQCNPANSQAK 228
G+ AN+++
Sbjct: 71 MTGEVSFQAANTKSA 85
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 40.3 bits (94), Expect = 7e-05
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 78 RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTP---HQAHYIYLTVVVLV 127
R + + +P+ D ++ + + D G + C V P + + L V V
Sbjct: 69 RIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV 121
Score = 33.8 bits (77), Expect = 0.015
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 24 RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSF 57
R + + +P+ D ++ + + D G + C V
Sbjct: 69 RIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKN 102
Score = 33.4 bits (76), Expect = 0.019
Identities = 20/111 (18%), Positives = 33/111 (29%), Gaps = 23/111 (20%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPA--YIFW-----------------NHNEAIISYDSQ 187
EV+ GS + L C S W I +
Sbjct: 7 REVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTF 66
Query: 188 RGGVNVITEKGETTVSYLLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
+ + + + S ++I SDNG + C NP + K+ V +
Sbjct: 67 KERIQWVGDPSWKDGS-IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLY 116
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 40.3 bits (94), Expect = 8e-05
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Query: 37 TLQLKY-PQHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLK 95
T+Q Y + + C+ + R I + T+G R + +N + +T+ ++
Sbjct: 21 TVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVTME 80
Query: 96 YPQHKDTGIYECQVSTT-PHQAHYIYLTV 123
D Y C + T + +T+
Sbjct: 81 DLMKTDADTYWCGIEKTGNDLGVTVQVTI 109
Score = 31.4 bits (71), Expect = 0.090
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 13 TTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQV 55
T+G R + +N + +T+ ++ D Y C +
Sbjct: 52 TSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDADTYWCGI 94
Score = 26.0 bits (57), Expect = 7.4
Identities = 9/79 (11%), Positives = 25/79 (31%), Gaps = 15/79 (18%)
Query: 154 GSTINLTCVVRFSPEPPAY-------IFWNHNEAIISYDS-----QRGGVNVITEKGETT 201
++ + C + Y W + ++ +R V++ + T
Sbjct: 17 RGSLTVQC--VYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRT 74
Query: 202 VSYLLIQKARPSDNGKYQC 220
+ + ++ +D Y C
Sbjct: 75 FT-VTMEDLMKTDADTYWC 92
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 41.8 bits (97), Expect = 9e-05
Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 11/101 (10%)
Query: 135 LVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNV 193
L P + G ++ LTC PE A + W + R
Sbjct: 1 LAPRRCPAQEVARGVLTSLPGDSVTLTCPGV-EPEDNATVHWVLRKPAAGSHPSRWAGMG 59
Query: 194 ITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAKSVMVNV 234
LL++ + D+G Y C A A +V + V
Sbjct: 60 ---------RRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLV 91
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 40.1 bits (93), Expect = 1e-04
Identities = 19/127 (14%), Positives = 36/127 (28%), Gaps = 30/127 (23%)
Query: 137 PEPETDIIGGP--EVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVI 194
P+ D G + + G+ + L + P P + W + R +
Sbjct: 14 PKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAP--TVIWQKAITQGNKAPARPAPDAP 71
Query: 195 TEKGETTV-----------------------SYLLIQKARPSDNGKYQC---NPANSQAK 228
+ G++ S ++ A D G Y NP
Sbjct: 72 EDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQV 131
Query: 229 SVMVNVL 235
++ V V+
Sbjct: 132 NLTVKVI 138
Score = 27.0 bits (59), Expect = 3.2
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ RV T D ++ + +D G+Y V
Sbjct: 89 ETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVK 123
Score = 27.0 bits (59), Expect = 3.2
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 76 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 110
+ RV T D ++ + +D G+Y V
Sbjct: 89 ETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVK 123
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 39.5 bits (92), Expect = 1e-04
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 61 RDIHLLTTG-RYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYI 119
++ + T G R TY R+ + + + D +L ++ D+G+Y C+V P +
Sbjct: 43 QNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVE-IPGWFNDQ 101
Query: 120 YLTVVVLV 127
+T + V
Sbjct: 102 KVTFSLQV 109
Score = 36.0 bits (83), Expect = 0.002
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 7 RDIHLLTTG-RYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSF 57
++ + T G R TY R+ + + + D +L ++ D+G+Y C+V
Sbjct: 43 QNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEI 94
Score = 33.7 bits (77), Expect = 0.013
Identities = 20/89 (22%), Positives = 28/89 (31%), Gaps = 18/89 (20%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAY-IFW--------NHNEAIISYDSQR------GGV 191
EV G + L C +S W +I + R
Sbjct: 5 VEVKGVVGHPVTLPC--TYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRY 62
Query: 192 NVITEKGETTVSYLLIQKARPSDNGKYQC 220
N+ E VS L I+ + SD+G Y C
Sbjct: 63 NLKGHISEGDVS-LTIENSVESDSGLYCC 90
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 39.2 bits (91), Expect = 2e-04
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 149 VFIENGSTINLTCV---VRFSPEPPAYIFWNHNEAIISYDSQ-RGGVNVITEKGETTVSY 204
V + ++ C+ V P P + W N ++++ S
Sbjct: 7 VQLHTAVEMHHWCIPFSVDGQPAP--SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGC 64
Query: 205 LLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
L + + +NG Y NP + S+M +
Sbjct: 65 LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 98
Score = 29.1 bits (65), Expect = 0.61
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 12 LTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
L + +T + N T L+L P H + G Y +
Sbjct: 41 LNETSFIFT--EFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 83
Score = 29.1 bits (65), Expect = 0.61
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 66 LTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 110
L + +T + N T L+L P H + G Y +
Sbjct: 41 LNETSFIFT--EFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 83
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 40.3 bits (93), Expect = 2e-04
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 15/92 (16%)
Query: 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYL 205
P V + G++ LTC + + A + W D+ G V + +T S L
Sbjct: 14 EPVVAVALGASRQLTCRLA-CADRGASVQWR------GLDTSLGAV-----QSDTGRSVL 61
Query: 206 LIQKARPSDNGKYQC---NPANSQAKSVMVNV 234
++ A S G C + +V + V
Sbjct: 62 TVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93
Score = 30.6 bits (68), Expect = 0.29
Identities = 16/146 (10%), Positives = 33/146 (22%), Gaps = 27/146 (18%)
Query: 87 SDDWTLQLKYPQHKDTGIYECQVSTTPHQA-HYIYLTVVVLVINDGKYLLVPEPETDIIG 145
+ L ++ G C S H + L V Y +
Sbjct: 56 TGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV---------YAFPNQLTVS--- 103
Query: 146 GPEVFIENGSTINLTC-VVRFSPEPPAYIFWN---------HNEAIISYDSQRGGVNVIT 195
P + + C + +P P + ++ +A+ +
Sbjct: 104 -PAALVPGDPE--VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGD 160
Query: 196 EKGETTVSYLLIQKARPSDNGK-YQC 220
E V+ + C
Sbjct: 161 EDVLFRVTERWRLPPLGTPVPPALYC 186
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 40.4 bits (94), Expect = 2e-04
Identities = 29/161 (18%), Positives = 46/161 (28%), Gaps = 23/161 (14%)
Query: 68 TGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAH-YIYLTVVVL 126
S D +L+L Q ++ G Y C+V TP +A + L VV
Sbjct: 60 GDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVA- 118
Query: 127 VINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVV-RFSPEPPAYIFWNHNEAIISYD 185
P + ++ EN C F PE I W +
Sbjct: 119 -----------SPASRLLLDQVGMKENEDK--YMCESSGFYPE-AINITWEKQTQKFPHP 164
Query: 186 SQRGGVNVITEKGE------TTVSYLLIQKARPSDNGKYQC 220
+ + + S L + ++ YQC
Sbjct: 165 IEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQC 205
Score = 27.3 bits (60), Expect = 4.3
Identities = 9/43 (20%), Positives = 14/43 (32%)
Query: 14 TGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
S D +L+L Q ++ G Y C+V
Sbjct: 60 GDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVV 102
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 38.8 bits (90), Expect = 3e-04
Identities = 14/93 (15%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 37 TLQLKYP--QHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQL 94
T++ +YP C+ + + ++ T RF + ++P + +T+ +
Sbjct: 29 TVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTM 88
Query: 95 KYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLV 127
+ +D+G Y C++ + + ++V
Sbjct: 89 TDLREEDSGHYWCRIYRPSDNSVSKSVRFYLVV 121
Score = 32.6 bits (74), Expect = 0.033
Identities = 9/43 (20%), Positives = 23/43 (53%)
Query: 13 TTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQV 55
++ T RF + ++P + +T+ + + +D+G Y C++
Sbjct: 61 SSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRI 103
Score = 28.8 bits (64), Expect = 0.63
Identities = 9/78 (11%), Positives = 21/78 (26%), Gaps = 12/78 (15%)
Query: 154 GSTINLTCVVRFSPEPPAYIFW------NHNEAIISYDS-----QRGGVNVITEKGETTV 202
G T+ + C + W +++ + +
Sbjct: 25 GQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFF 84
Query: 203 SYLLIQKARPSDNGKYQC 220
+ + + R D+G Y C
Sbjct: 85 T-VTMTDLREEDSGHYWC 101
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 37.6 bits (87), Expect = 5e-04
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 69 GRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLV 127
TY R+++ + D +L +K D G Y C++ P + L + + +
Sbjct: 51 RNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQ-FPGLMNDKKLELKLDI 108
Score = 37.2 bits (86), Expect = 7e-04
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 15 GRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSF 57
TY R+++ + D +L +K D G Y C++ F
Sbjct: 51 RNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQF 93
Score = 31.4 bits (71), Expect = 0.085
Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 16/82 (19%)
Query: 154 GSTINLTCVVRFSPEP-PAYIFW--------NHNEAIISYDSQR------GGVNVITEKG 198
G L C + W ++ D + + +
Sbjct: 9 GKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLN 68
Query: 199 ETTVSYLLIQKARPSDNGKYQC 220
+ VS L+I+ D+G Y C
Sbjct: 69 KGDVS-LIIKNVTLDDHGTYCC 89
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 37.5 bits (87), Expect = 6e-04
Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 4/85 (4%)
Query: 143 IIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVN-VITEKGET 200
I+ P + + G L C P P I W + D + ++ G
Sbjct: 12 IVEHPSDLIVSKGEPATLNCKAEGRPTP--TIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 201 TVSYLLIQKARPSDNGKYQCNPANS 225
++ + D G Y C N
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNY 94
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 38.3 bits (89), Expect = 0.001
Identities = 27/173 (15%), Positives = 52/173 (30%), Gaps = 21/173 (12%)
Query: 67 TTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVL 126
++ T + + L+ D+G+Y C + ++
Sbjct: 56 SSVVLESGISPGKYDTYGSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLV 115
Query: 127 VINDGKYLLVPEPETDIIG--------GPEVFIENGSTINLTCVVRFSPEPPAYIFW--- 175
V + + + V + + L C+ S YIFW
Sbjct: 116 VTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSY-YIFWYKR 174
Query: 176 NHNEA---IISYDSQR-----GGVNVITEKGETTVSYLLIQKARPSDNGKYQC 220
++ +I S G +V +K +V+ L I + D+ KY C
Sbjct: 175 LPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVA-LTISALQLEDSAKYFC 226
Score = 29.4 bits (66), Expect = 0.93
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 19/91 (20%)
Query: 146 GPEVFIENGSTINLTCVVRFSPEPPAYIFW---NHNEA---IISYDSQRGGVN------- 192
V + GS+ +TC + YI W +A ++ YDS V
Sbjct: 9 TKSVIRQTGSSAEITC--DLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISP 66
Query: 193 ---VITEKGETTVSYLLIQKARPSDNGKYQC 220
+ ++++ +D+G Y C
Sbjct: 67 GKYDTYGSTRKNL-RMILRNLIENDSGVYYC 96
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 36.8 bits (85), Expect = 0.001
Identities = 24/110 (21%), Positives = 35/110 (31%), Gaps = 23/110 (20%)
Query: 149 VFIENGSTINLTCVVRFSPEPPAY--IFWNHNEA--------IISYDSQRGGVNVITE-K 197
+ G T L C SPE I W + A II Y + + + K
Sbjct: 15 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLK 74
Query: 198 GETTVSY---------LLIQKARPSDNGKYQC---NPANSQAKSVMVNVL 235
G + + + + SD G YQC K + + VL
Sbjct: 75 GRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 124
Score = 34.8 bits (80), Expect = 0.007
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 61 RDIHLLTTGRYTYTN-DQRFR-----VINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPH 114
+ +L +G Y + + N+ S D ++ + Q D G Y+C+V P
Sbjct: 54 DQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPG 113
Query: 115 QA-HYIYLTVVV 125
A I+L V+V
Sbjct: 114 VANKKIHLVVLV 125
Score = 28.3 bits (63), Expect = 1.3
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 7 RDIHLLTTGRYTYTN-DQRFR-----VINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRH 60
+ +L +G Y + + N+ S D ++ + Q D G Y+C+V
Sbjct: 54 DQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPG 113
Query: 61 RD 62
Sbjct: 114 VA 115
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 36.5 bits (84), Expect = 0.001
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 37 TLQLKYPQHKDTGIYEC----QVSFVRHRDIHLLTTG-RYTYTNDQRFRVINNPTSDDWT 91
TL Y H + C + + T G T+ + R+++ N + + +
Sbjct: 16 TLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVS 75
Query: 92 LQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLV 127
L ++ D G Y C V P H++ + V
Sbjct: 76 LTIENTVVGDGGPYCCVV-EIPGAFHFVDYMLEVKP 110
Score = 35.0 bits (80), Expect = 0.005
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 5 RHRDIHLLTTG-RYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSF 57
+ T G T+ + R+++ N + + +L ++ D G Y C V
Sbjct: 42 YCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVVGDGGPYCCVVEI 95
Score = 31.1 bits (70), Expect = 0.12
Identities = 15/88 (17%), Positives = 23/88 (26%), Gaps = 15/88 (17%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFW--------NHNEAIISYDSQR------GGVN 192
V G + L C+ + W ++I +
Sbjct: 5 TAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQ 64
Query: 193 VITEKGETTVSYLLIQKARPSDNGKYQC 220
+ E VS L I+ D G Y C
Sbjct: 65 LKGNISEGNVS-LTIENTVVGDGGPYCC 91
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 36.5 bits (84), Expect = 0.002
Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 12/85 (14%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPA--YIFW-----NHNEAIISYDSQRGG----VNVIT 195
PE+ GS+ L C S A + W + + + + G +
Sbjct: 15 PEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSR 74
Query: 196 EKGETTVSYLLIQKARPSDNGKYQC 220
+ L I+ R D Y C
Sbjct: 75 FLHDHQAE-LHIRDVRGHDASIYVC 98
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 36.3 bits (84), Expect = 0.002
Identities = 10/64 (15%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 67 TTGRYTYTNDQ---RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTV 123
T ++ R + + +++ Q +D+G+Y+C + P + H ++ +
Sbjct: 50 TERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRI 109
Query: 124 VVLV 127
++V
Sbjct: 110 RLVV 113
Score = 29.4 bits (66), Expect = 0.48
Identities = 7/46 (15%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 13 TTGRYTYTNDQ---RFRVINNPTSDDWTLQLKYPQHKDTGIYECQV 55
T ++ R + + +++ Q +D+G+Y+C +
Sbjct: 50 TERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVI 95
Score = 25.6 bits (56), Expect = 9.2
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 183 SYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC 220
S+ Q G + + + + + + D+G YQC
Sbjct: 57 SHPVQVGRIILEDYHDHGLL-RVRMVNLQVEDSGLYQC 93
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 36.0 bits (83), Expect = 0.002
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 5/90 (5%)
Query: 37 TLQLKY-PQHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLK 95
+Q Y Q C+ L+++ R + + +++
Sbjct: 16 LVQCHYRLQDVKAQKVWCRFL--PEGCQPLVSSAVDRRAPAGRRTFLTDLGGGLLQVEMV 73
Query: 96 YPQHKDTGIYECQV--STTPHQAHYIYLTV 123
Q +D G Y C V + P H + L +
Sbjct: 74 TLQEEDAGEYGCMVDGARGPQILHRVSLNI 103
Score = 25.6 bits (56), Expect = 7.9
Identities = 10/54 (18%), Positives = 19/54 (35%)
Query: 10 HLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRHRDI 63
L+++ R + + +++ Q +D G Y C V R I
Sbjct: 42 PLVSSAVDRRAPAGRRTFLTDLGGGLLQVEMVTLQEEDAGEYGCMVDGARGPQI 95
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 35.7 bits (82), Expect = 0.002
Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 15/111 (13%)
Query: 131 GKYLLVPEPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRG 189
G ++ G E V + +G + + S W N + + G
Sbjct: 1 GSSGSSGTAR--LVAGLEDVQVYDGEDAVFSLDL--STIIQ--GTWFLNGEELKSNEPEG 54
Query: 190 GVN------VITEKGETTVSYLLIQKARPSDNGKYQCNPANSQAKSVMVNV 234
V I +KG L++ + D+G S + +
Sbjct: 55 QVEPGALRYRIEQKG--LQHRLILHAVKHQDSGALVGFSCPGVQDSAALTI 103
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 36.8 bits (84), Expect = 0.003
Identities = 24/151 (15%), Positives = 44/151 (29%), Gaps = 33/151 (21%)
Query: 96 YPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVF----- 150
+ + +D+G Y C ++ Y+YL V +D K + + +
Sbjct: 51 FSEVEDSGYYVCYT-PASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNK 109
Query: 151 ---------IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETT 201
++ LTC + I W + +IIS +
Sbjct: 110 AKNLVQVDGSRGDGSVLLTCGLTDKT-----IKWLKDGSIISPLNATKNT---------- 154
Query: 202 VSYLLIQKARPSDNGKYQCNPANSQAKSVMV 232
+ G YQC A + + V
Sbjct: 155 ---WNLGNNAKDPRGTYQCQGAKETSNPLQV 182
Score = 35.6 bits (81), Expect = 0.006
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 18/78 (23%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
G+++ LTC + + W N + + +L +
Sbjct: 14 GTSVELTCPLDSDEN----LKWEKNGQELPQKHDK--------------HLVLQDFSEVE 55
Query: 214 DNGKYQCNPANSQAKSVM 231
D+G Y C S + +
Sbjct: 56 DSGYYVCYTPASNKNTYL 73
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 35.7 bits (82), Expect = 0.003
Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 59 RHRDIHLLTTG-RYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAH 117
+ L T G R ++ ++ + +L + D+G+Y C++ P +
Sbjct: 41 KCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIE-VPGWFN 99
Query: 118 YIYLTVVVLV 127
+ V + +
Sbjct: 100 DVKKNVRLEL 109
Score = 35.3 bits (81), Expect = 0.003
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 5 RHRDIHLLTTG-RYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSF 57
+ L T G R ++ ++ + +L + D+G+Y C++
Sbjct: 41 KCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEV 94
Score = 28.4 bits (63), Expect = 0.98
Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 15/87 (17%)
Query: 148 EVFIENGSTINLTCVVRFSPEPPAYIFW--------NHNEAIISYDSQR------GGVNV 193
+ G + L C + + W N ++ D R +
Sbjct: 5 TIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTL 64
Query: 194 ITEKGETTVSYLLIQKARPSDNGKYQC 220
+ + VS L I D+G Y C
Sbjct: 65 LGKVQFGEVS-LTISNTNRGDSGVYCC 90
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 37.5 bits (87), Expect = 0.003
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 148 EVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLI 207
+ G + N C V S P + W+ ++ + + ++ L I
Sbjct: 491 GTEVGEGQSANFYCRVIASSPP--VVTWHKDDRELKQSVK------YMKRYNGNDYGLTI 542
Query: 208 QKARPSDNGKYQCNPANS 225
+ + D G+Y NS
Sbjct: 543 NRVKGDDKGEYTVRAKNS 560
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 35.1 bits (80), Expect = 0.004
Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 10/76 (13%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
G+T+ LTC E I W HN D GG G L + +
Sbjct: 21 GTTVILTCPQYPGSE----ILWQHN------DKNIGGDEDDKNIGSDEDHLSLKEFSELE 70
Query: 214 DNGKYQCNPANSQAKS 229
+G Y C P S+ +
Sbjct: 71 QSGYYVCYPRGSKPED 86
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 35.2 bits (81), Expect = 0.004
Identities = 10/78 (12%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 53 CQVSFVRHRDIHLLTTGRYTYTNDQ---RFRVINNPTSDDWTLQLKYPQHKDTGIYECQV 109
+ T ++ R + + +++ Q +D+G+Y+C +
Sbjct: 41 QIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVI 100
Query: 110 STTPHQAHYIYLTVVVLV 127
P + H ++ + ++V
Sbjct: 101 YQPPKEPHMLFDRIRLVV 118
Score = 28.3 bits (63), Expect = 1.1
Identities = 7/46 (15%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 13 TTGRYTYTNDQ---RFRVINNPTSDDWTLQLKYPQHKDTGIYECQV 55
T ++ R + + +++ Q +D+G+Y+C +
Sbjct: 55 TERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVI 100
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 35.3 bits (81), Expect = 0.005
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAH--YIYLTV 123
+ Q D TL L +D G Y C+ +T P + +L V
Sbjct: 77 SAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
Score = 30.7 bits (69), Expect = 0.18
Identities = 19/119 (15%), Positives = 36/119 (30%), Gaps = 31/119 (26%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPP--AYIFW------NHNEAIISYDSQRGGVNVITEKG 198
PEV + G T+ L C + + + W +++ + ++ + G + G
Sbjct: 10 PEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPG 69
Query: 199 ETTVSY-------------------LLIQKARPSDNGKYQC----NPANSQAKSVMVNV 234
+S+ L + D G Y C P S + V
Sbjct: 70 SERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
Score = 29.2 bits (65), Expect = 0.54
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ Q D TL L +D G Y C+ +
Sbjct: 77 SAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFA 113
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 35.0 bits (81), Expect = 0.005
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 10/80 (12%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFW------NHNEAIISYDSQRGGVNVITEKGET 200
V E G ++ + CV+R + W NE I S+ G G
Sbjct: 8 RSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESI---SKGGRYVETVNSGSK 64
Query: 201 TVSYLLIQKARPSDNGKYQC 220
+ S L I D G Y+C
Sbjct: 65 SFS-LRINDLTVEDGGTYRC 83
Score = 28.5 bits (64), Expect = 0.74
Identities = 11/57 (19%), Positives = 22/57 (38%)
Query: 17 YTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRHRDIHLLTTGRYTY 73
+ + R+ N S ++L++ +D G Y C + + L + RY
Sbjct: 47 ESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVAGGYCDYALCSSRYAE 103
Score = 26.6 bits (59), Expect = 3.5
Identities = 9/50 (18%), Positives = 18/50 (36%)
Query: 71 YTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIY 120
+ + R+ N S ++L++ +D G Y C + Y
Sbjct: 47 ESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVAGGYCDYAL 96
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 34.9 bits (80), Expect = 0.007
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 77 QRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVI 128
RF ++ +P + + TL ++ + D G Y ++ + +Y Y + V V
Sbjct: 75 DRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVT 126
Score = 31.4 bits (71), Expect = 0.088
Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 26/113 (23%)
Query: 147 PEVFIENGSTINLTCVVRFSPEP-----PAYIFWNHNEAIISYD--------------SQ 187
V ++ G +++ C + + P + +W IS+
Sbjct: 14 SSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEET 73
Query: 188 RGGVNVITEKGETTVSYLLIQKARPSDNGKYQC------NPANSQAKSVMVNV 234
R +++ + + L I+ AR SD G+Y N + + VNV
Sbjct: 74 RDRFHLLGDPQTKNCT-LSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNV 125
Score = 29.9 bits (67), Expect = 0.34
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 23 QRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQ 77
RF ++ +P + + TL ++ + D G Y ++ ++ Y DQ
Sbjct: 75 DRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRME---------KGNIKWNYKYDQ 120
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 34.5 bits (79), Expect = 0.007
Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 37 TLQLKY-PQHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLK 95
++Q Y +H+ Y C+ ++ T + R + ++P + +T+ L+
Sbjct: 15 SVQCPYEKEHRTLNKYWCRPPQ-IFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLE 73
Query: 96 YPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVIN 129
+D G Y C V T Q + + V + +
Sbjct: 74 NLTEEDAGTYWCGVDTPWLQDFHDPVVEVEVSVF 107
Score = 29.4 bits (66), Expect = 0.38
Identities = 12/58 (20%), Positives = 24/58 (41%)
Query: 11 LLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRHRDIHLLTT 68
++ T + R + ++P + +T+ L+ +D G Y C V +D H
Sbjct: 43 IVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVV 100
Score = 26.0 bits (57), Expect = 5.7
Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 13/86 (15%)
Query: 146 GP-EVFIENGSTINLTCVVRFSPEPPAYIFW------NHNEAIISYDS----QRGGVNVI 194
V G ++++ C +W + I+ + G V++
Sbjct: 2 KARTVAGPVGGSLSVQCPYE-KEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIR 60
Query: 195 TEKGETTVSYLLIQKARPSDNGKYQC 220
+ + + ++ D G Y C
Sbjct: 61 DSPANLSFT-VTLENLTEEDAGTYWC 85
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 34.4 bits (79), Expect = 0.008
Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 17/90 (18%)
Query: 147 PEVFIENGSTINLTCVVRFSPE----PPAYIFW------------NHNEAIISYDSQRGG 190
V +GS + + C+ + + W + + + RG
Sbjct: 8 KNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGR 67
Query: 191 VNVITEKGETTVSYLLIQKARPSDNGKYQC 220
++ + LL++ +P D+G Y
Sbjct: 68 AELMGNMDHKVCN-LLLKDLKPEDSGTYNF 96
Score = 33.7 bits (77), Expect = 0.015
Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 77 QRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVIND 130
R ++ N L LK + +D+G Y + + ++ + + +
Sbjct: 66 GRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISDSN-RWLDVKGTTVTVTT 118
Score = 30.6 bits (69), Expect = 0.18
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 23 QRFRVINNPTSDDWTLQLKYPQHKDTGIYECQV 55
R ++ N L LK + +D+G Y +
Sbjct: 66 GRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRF 98
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 34.1 bits (78), Expect = 0.010
Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 37 TLQLKYP---QHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQ 93
++ YP ++ T Y C+ + + G + R + N P + + +
Sbjct: 19 SITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVN 78
Query: 94 LKYPQHKDTGIYECQVS-TTPHQAHYIYLTVV 124
+ D+G Y+C + + + + L V+
Sbjct: 79 IAQLSQDDSGRYKCGLGINSRGLSFDVSLEVL 110
Score = 31.8 bits (72), Expect = 0.066
Identities = 8/43 (18%), Positives = 18/43 (41%)
Query: 13 TTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQV 55
+ G + R + N P + + + + D+G Y+C +
Sbjct: 52 SEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGL 94
Score = 26.0 bits (57), Expect = 6.6
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 14/90 (15%)
Query: 144 IGGPE-VFIENGSTINLTCVVRFSPEPPAY-IFW------NHNEAIISYDS-----QRGG 190
I GPE V G+++++TC + +W +IS + G
Sbjct: 4 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGR 63
Query: 191 VNVITEKGETTVSYLLIQKARPSDNGKYQC 220
N+ T + I + D+G+Y+C
Sbjct: 64 ANLTNFPENGTFV-VNIAQLSQDDSGRYKC 92
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 33.7 bits (77), Expect = 0.012
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
Query: 154 GSTINLTCVVRFSPEPPAYIFW--NHNEAIISYDSQRGGVNVITEKGETTVSY----LLI 207
GS + L PE + W ++ I+ +DS++ KG + L I
Sbjct: 19 GSNVTLNISES-LPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYI 77
Query: 208 QKARPSDNGKYQC----NPANSQAKSVMVNVL 235
K + DN Y N Q + + VL
Sbjct: 78 SKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVL 109
Score = 29.5 bits (66), Expect = 0.43
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 11/63 (17%)
Query: 77 QRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLV 136
R R+ + L + Q +D Y +V + + V V
Sbjct: 64 GRVRLDPQSGA----LYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV-------LDPV 112
Query: 137 PEP 139
P+P
Sbjct: 113 PKP 115
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 35.0 bits (80), Expect = 0.012
Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 7/147 (4%)
Query: 78 RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVP 137
RF V + + + +D+ +Y C S Y + V+ D + V
Sbjct: 64 RFSV-QQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLR--NVT 120
Query: 138 EPETDIIGGPEVFIENGSTINLTCVV-RFSPEPPAYIFWNHNEAIISYDSQRGGVNVITE 196
P+ + + I N L C+ F P+ + W N +
Sbjct: 121 PPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVE-LSWWVNGKEVHSGVSTDPQAYKES 179
Query: 197 KGE-TTVSYLLIQKAR-PSDNGKYQCN 221
+ S L + + ++C
Sbjct: 180 NYSYSLSSRLRVSATFWHNPRNHFRCQ 206
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 34.1 bits (77), Expect = 0.014
Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 24/98 (24%)
Query: 147 PEVFIENGSTINLTCVVRFSPEP-PAYIFW-------NHNEAIISYDSQRGGVNVITEKG 198
EV + G T+ L C + + + P I W + + +G E
Sbjct: 12 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESD 71
Query: 199 ETTVSY----------------LLIQKARPSDNGKYQC 220
S+ L + P D G+Y C
Sbjct: 72 SYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWC 109
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 33.6 bits (76), Expect = 0.016
Identities = 18/97 (18%), Positives = 25/97 (25%), Gaps = 5/97 (5%)
Query: 138 EPETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAY-IFWN--HNEAIISYDSQRGGVNV 193
EP + P+ V +E G + V P I W + S R
Sbjct: 10 EPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKE 69
Query: 194 ITEKGETTVSY-LLIQKARPSDNGKYQCNPANSQAKS 229
+ L I K D G Y+
Sbjct: 70 SHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCD 106
Score = 27.1 bits (59), Expect = 2.4
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 90 WTLQLKYPQHKDTGIYECQVST 111
L + D G Y +V
Sbjct: 80 VELHIGKVVLGDRGYYRLEVKA 101
Score = 26.7 bits (58), Expect = 3.4
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 36 WTLQLKYPQHKDTGIYECQVS 56
L + D G Y +V
Sbjct: 80 VELHIGKVVLGDRGYYRLEVK 100
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 34.7 bits (78), Expect = 0.025
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 11/74 (14%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLL 206
+ F ++G T L C + A +FW ++ +S + G+ LL
Sbjct: 541 RQHFFKHGGTAELKCSQK---SNLARVFWKFQNGVLKAESPKYGL--------MGRKNLL 589
Query: 207 IQKARPSDNGKYQC 220
I D+G YQC
Sbjct: 590 IFNLSEGDSGVYQC 603
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 33.0 bits (75), Expect = 0.032
Identities = 22/84 (26%), Positives = 27/84 (32%), Gaps = 19/84 (22%)
Query: 154 GSTINLTCVVRFSPEPPA---YIFWNHNEAIISYDSQRGGVNVITE-----KGETTVSY- 204
G L C R SP A + W + R G + E +G T +
Sbjct: 21 GDEAELPC--RISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKE 78
Query: 205 --------LLIQKARPSDNGKYQC 220
L IQ R SD G Y C
Sbjct: 79 SIGEGKVALRIQNVRFSDEGGYTC 102
Score = 32.2 bits (73), Expect = 0.067
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 63 IHLLTTGR-YTYTNDQRFR-----VINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQA 116
+HL G+ +R + + L+++ + D G Y C +Q
Sbjct: 52 VHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQE 111
Query: 117 -HYIYLTV 123
+ L V
Sbjct: 112 EAAVELKV 119
Score = 28.7 bits (64), Expect = 0.97
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 6/54 (11%)
Query: 9 IHLLTTGR-YTYTNDQRFR-----VINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+HL G+ +R + + L+++ + D G Y C
Sbjct: 52 VHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFR 105
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 33.7 bits (77), Expect = 0.038
Identities = 28/180 (15%), Positives = 57/180 (31%), Gaps = 37/180 (20%)
Query: 54 QVSFVRHRDIHLLTTGR---------YTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGI 104
+V F D + T + T+ + DW +
Sbjct: 263 EVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPI----MHQDW---------LNGKE 309
Query: 105 YECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGP-EVFIENGSTINLTCVV 163
++C+V+ A + + P+ I P E ++ ++LTC++
Sbjct: 310 FKCRVN---SAAFPAPIEKTISKTKGK----PRAPQVYTIPPPKEQMAKD--KVSLTCMI 360
Query: 164 R-FSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTV-SYLLIQKARPSDNGKYQCN 221
F PE + W + + + ++ G V S L +QK+ + C+
Sbjct: 361 TDFFPE-DITVEWQSDGQAPE--NYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCS 417
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 33.4 bits (76), Expect = 0.041
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 147 PEVFIENGSTINLTCVVR-FSPEPP-AYIFWNHNEAIISYDSQRGGVNVITEKGETTVSY 204
+ + G T +TCVV S P W ++ + +Q + +VS
Sbjct: 25 TKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVH-TAQTHAPEKQSNSTLRSVSE 83
Query: 205 LLIQKARPSDNGKYQC 220
L I + + ++C
Sbjct: 84 LPIVERDWLNGKTFKC 99
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 33.3 bits (76), Expect = 0.050
Identities = 21/137 (15%), Positives = 37/137 (27%), Gaps = 29/137 (21%)
Query: 105 YECQV--STTPHQAHYIYLTVVVLVINDGKYLLVPEPETDI---IGGPEVFI-------E 152
Y C V + + + P+V+
Sbjct: 196 YICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLPPSRDEL 255
Query: 153 NGSTINLTCVVR-FSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGE-------TTVSY 204
+ ++LTC+V+ F P A + W N + N T S
Sbjct: 256 TKNQVSLTCLVKGFYPSDIA-VEWESNGQPEN--------NYKTTPPVLDSDGSFFLYSK 306
Query: 205 LLIQKARPSDNGKYQCN 221
L + K+R + C+
Sbjct: 307 LTVDKSRWQQGNVFSCS 323
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 33.5 bits (76), Expect = 0.052
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 11/80 (13%)
Query: 147 PEVFIENGSTINLTCVVR-FSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGE----TT 201
+ TI L C+V ++P I W + ++ ++ + E +T
Sbjct: 17 CDGGGHFPPTIQLLCLVSGYTPGT-IQITWLEDGQVMD-----VDLSTASTTQEGELAST 70
Query: 202 VSYLLIQKARPSDNGKYQCN 221
S L + + + Y C
Sbjct: 71 QSELTLSQKHWLSDRTYTCQ 90
Score = 28.5 bits (63), Expect = 2.2
Identities = 23/138 (16%), Positives = 35/138 (25%), Gaps = 23/138 (16%)
Query: 91 TLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVF 150
L L Y CQV+ H L D+
Sbjct: 73 ELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLF------ 126
Query: 151 IENGSTINLTCVVR--FSPEPPAYIFWN------HNEAIISYDSQRGGVNVITEKGETTV 202
+ +TC+V + + W+ N + + QR G T
Sbjct: 127 --IRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNG-------TLTVT 177
Query: 203 SYLLIQKARPSDNGKYQC 220
S L + + YQC
Sbjct: 178 STLPVGTRDWIEGETYQC 195
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 32.0 bits (73), Expect = 0.057
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 76 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTP 113
D RF++I P D+ + + + D+GIY C +
Sbjct: 59 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLH 96
Score = 30.0 bits (68), Expect = 0.21
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
D RF++I P D+ + + + D+GIY C
Sbjct: 59 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAI 93
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 31.8 bits (71), Expect = 0.067
Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVI-TEKGETTVSYLLIQKARP 212
G + C V++ P + HN I + E V L +
Sbjct: 29 GELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHL 88
Query: 213 SDNGKYQC----NPANSQAKSVMVNV 234
SDNG Y C N + SV ++V
Sbjct: 89 SDNGSYSCSTNFNSQVINSHSVTIHV 114
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 31.1 bits (70), Expect = 0.10
Identities = 17/94 (18%), Positives = 27/94 (28%), Gaps = 18/94 (19%)
Query: 143 IIGGPE-VFIENGSTINLTCVVRFSPEPPA---YIFW-----NHNEAIISYDSQRGGVNV 193
+ PE V + + C + P + W + + I DS +
Sbjct: 4 TLKTPESVTGTWKGDVKIQC--IYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQ 61
Query: 194 ITEKGETTVS-------YLLIQKARPSDNGKYQC 220
+G VS L I + D Y C
Sbjct: 62 AKYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTC 95
Score = 30.7 bits (69), Expect = 0.16
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 61 RDIHLLTTGRYTYTNDQRFRV-INNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYI 119
+TG + R R+ +++ D +LQ+ Q D Y C+V+ + +
Sbjct: 48 TIFLRDSTGDHIQQAKYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQV 107
Query: 120 YLTVVVLV 127
++ +
Sbjct: 108 IRDKIIEL 115
Score = 28.0 bits (62), Expect = 1.5
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 7 RDIHLLTTGRYTYTNDQRFRV-INNPTSDDWTLQLKYPQHKDTGIYECQVSF 57
+TG + R R+ +++ D +LQ+ Q D Y C+V++
Sbjct: 48 TIFLRDSTGDHIQQAKYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTW 99
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA
exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus
cereus} PDB: 3q4i_A
Length = 205
Score = 32.0 bits (73), Expect = 0.11
Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 16/100 (16%)
Query: 72 TYTNDQ----RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLV 127
TY+ D RF+ + + + + K E ++ + + +V
Sbjct: 21 TYSKDVYDIERFQQLRDISISMMSHYTKTDWEV----VEKLFASETGYQT-PKVDIRAVV 75
Query: 128 INDGKYLLVPEPETD---IIGGPEVFIENGSTINLTCVVR 164
+ K L V E + GG + + G T +
Sbjct: 76 FQNEKLLFVKEKSDGKWALPGG---WADVGYTP-TEVAAK 111
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 31.9 bits (72), Expect = 0.12
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 13/86 (15%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFW---NHNEA---IISYDS-----QRGGVNVIT 195
V + G+++ L C ++S Y+FW + ++ Y S Q
Sbjct: 17 ARVTVSEGASLQLRC--KYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAE 74
Query: 196 EKGETTVSYLLIQKARPSDNGKYQCN 221
+ +L SD+ Y C
Sbjct: 75 FSKSDSSFHLRKASVHWSDSAVYFCA 100
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 32.2 bits (73), Expect = 0.12
Identities = 26/149 (17%), Positives = 45/149 (30%), Gaps = 15/149 (10%)
Query: 73 YTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYL-TVVVLVINDG 131
Y D+ I + + + G Y C+ S + VV+++
Sbjct: 57 YKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTG- 115
Query: 132 KYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGV 191
+P GP V +G + L C + F+ H E I S+ G
Sbjct: 116 ---NHRKPSLLAHPGPLVK--SGERVILQC----WSDIMFEHFFLHKEGISKDPSRLVG- 165
Query: 192 NVITEKGETTVSYLLIQKARPSDNGKYQC 220
+ + I + G Y+C
Sbjct: 166 ---QIHDGVSKANFSIGPMMLALAGTYRC 191
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 31.8 bits (72), Expect = 0.12
Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 13/88 (14%)
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
I G+++ + C A + E + + I
Sbjct: 16 ISRGNSVTIRC----QGTLEAQEYRLVKEGSPEPWDTQN------PLEPKNKARFSIPSM 65
Query: 211 RPSDNGKYQC---NPANSQAKSVMVNVL 235
G+Y+C +PA S + ++
Sbjct: 66 TEHHAGRYRCYYYSPAGWSEPSDPLELV 93
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 31.7 bits (72), Expect = 0.12
Identities = 17/143 (11%), Positives = 34/143 (23%), Gaps = 23/143 (16%)
Query: 79 FRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYI-YLTVVVLVINDGKYLLVP 137
++ ++ D L + + G Y C + L +V + L
Sbjct: 41 EKLSSSRYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQ 100
Query: 138 EPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEK 197
P + +G + L C + Y +
Sbjct: 101 ---------PGPAVSSGGDVTLQC---QTRYGFDQFALYKEGDPAPYKNPERWYRAS--- 145
Query: 198 GETTVSYLLIQKARPSDNGKYQC 220
I + +G Y+C
Sbjct: 146 -------FPIITVTAAHSGTYRC 161
Score = 26.7 bits (59), Expect = 4.9
Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 22/87 (25%)
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
+ + L C P ++ + Y Q + L I
Sbjct: 19 VPLEKPVTLRCQGP----PGVDLYRLEKLSSSRYQDQ---------------AVLFIPAM 59
Query: 211 RPSDNGKYQC---NPANSQAKSVMVNV 234
+ S G+Y+C N + S + +
Sbjct: 60 KRSLAGRYRCSYQNGSLWSLPSDQLEL 86
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 31.6 bits (71), Expect = 0.14
Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 14/85 (16%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFW---NHNEA---IISYDS-----QRGGVNVIT 195
+ I G L C ++ P + + W + + G
Sbjct: 11 QSLIILEGKNCTLQC--NYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATL 68
Query: 196 EKGETTVSYLLIQKARPSDNGKYQC 220
+ S L I ++ SD+ Y C
Sbjct: 69 DADTKQSS-LHITASQLSDSASYIC 92
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 30.0 bits (67), Expect = 0.14
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 18/78 (23%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
G+++ LTC + + W N + + +L +
Sbjct: 14 GTSVELTCPLDSDEN----LKWEKNGQEL--------------PQKHDKHLVLQDFSEVE 55
Query: 214 DNGKYQCNPANSQAKSVM 231
D+G Y C S + +
Sbjct: 56 DSGYYVCYTPASNKNTYL 73
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 31.8 bits (72), Expect = 0.14
Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 22/121 (18%)
Query: 101 DTGIYECQVSTTPHQ-AHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINL 159
G Y+CQ ++ + L +VV + +L + + G I+L
Sbjct: 75 KAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSAD---------RGLVLMPGENISL 125
Query: 160 TCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQ 219
TC S P F E G +++ + + + + +G Y+
Sbjct: 126 TCS---SAHIPFDRFSLAKE---------GELSLPQHQSGEHPANFSLGPVDLNVSGIYR 173
Query: 220 C 220
C
Sbjct: 174 C 174
Score = 27.5 bits (61), Expect = 3.7
Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 11/88 (12%)
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
I ++ + C + E + R + ET ++ I
Sbjct: 20 IPLDGSVKIQC--QAIREAYLTQLMIIKN-----STYREIGRRLKFWNETDPEFV-IDHM 71
Query: 211 RPSDNGKYQC---NPANSQAKSVMVNVL 235
+ G+YQC S + ++
Sbjct: 72 DANKAGRYQCQYRIGHYRFRYSDTLELV 99
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 32.2 bits (73), Expect = 0.16
Identities = 31/180 (17%), Positives = 59/180 (32%), Gaps = 37/180 (20%)
Query: 54 QVSFVRHRDIHLLTTG---------RYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGI 104
+V F + D + TY V DW +
Sbjct: 282 EVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTV----LHQDW---------LNGKE 328
Query: 105 YECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIG-GPEVFIENGSTINLTCVV 163
Y+C+VS ++A + + EP+ + + +N ++LTC+V
Sbjct: 329 YKCKVS---NKALPAPIEKTISKAKG----QPREPQVYTLPPSRDELTKN--QVSLTCLV 379
Query: 164 R-FSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTV-SYLLIQKARPSDNGKYQCN 221
+ F P + W N + + + V+ G + S L + K+R + C+
Sbjct: 380 KGFYPS-DIAVEWESNGQPEN--NYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCS 436
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 31.8 bits (72), Expect = 0.16
Identities = 17/121 (14%), Positives = 26/121 (21%), Gaps = 23/121 (19%)
Query: 101 DTGIYECQV-STTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINL 159
G Y C L +VV + D L V P + +G +
Sbjct: 71 MAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVH---------PGPEVISGEKVTF 121
Query: 160 TCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQ 219
C + G V + + G Y+
Sbjct: 122 YCR---LDTATSMFLLLKEGRSSHVQRGYGKVQAE----------FPLGPVTTAHRGTYR 168
Query: 220 C 220
C
Sbjct: 169 C 169
Score = 30.6 bits (69), Expect = 0.36
Identities = 9/88 (10%), Positives = 21/88 (23%), Gaps = 13/88 (14%)
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
+ + + C A + H E + + I
Sbjct: 18 VPKEKQVTICCQGN----YGAVEYQLHFEGSLFAVDRP------KPPERINKVKFYIPDM 67
Query: 211 RPSDNGKYQC---NPANSQAKSVMVNVL 235
G+Y C S +++++
Sbjct: 68 NSRMAGQYSCIYRVGELWSEPSNLLDLV 95
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 31.5 bits (71), Expect = 0.17
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 14/85 (16%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFW---NHNEA---IISYDS-----QRGGVNVIT 195
+ + G + L C F+ + W + + ++ S G +N
Sbjct: 8 AALSVPEGENLVLNC--SFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASL 65
Query: 196 EKGETTVSYLLIQKARPSDNGKYQC 220
+K + L I ++P D+ Y C
Sbjct: 66 DKSSGRST-LYIAASQPGDSATYLC 89
Score = 28.8 bits (64), Expect = 1.1
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 76 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIY 120
R + +S TL + Q D+ Y C V T ++
Sbjct: 58 SGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGGSYIPT 102
Score = 27.6 bits (61), Expect = 2.5
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
R + +S TL + Q D+ Y C V
Sbjct: 58 SGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVR 92
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 30.9 bits (70), Expect = 0.18
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 76 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTP 113
D RF++I P D+ + + + D+GIY C +
Sbjct: 69 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLH 106
Score = 29.4 bits (66), Expect = 0.56
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
D RF++I P D+ + + + D+GIY C
Sbjct: 69 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAI 103
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP
binding, dephosphorylation; 2.50A {Escherichia coli}
PDB: 3dku_A
Length = 153
Score = 30.9 bits (70), Expect = 0.21
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 120 YLTVVVLVINDGKYLLVPEPETD-----IIGGPEVFIENGSTINLTCVVR 164
++TV +V +GK+L+V E G +E T+ + R
Sbjct: 5 HVTVACVVHAEGKFLVVEETINGKALWNQPAG---HLEADETL-VEAAAR 50
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.50A
{Burkholderia pseudomallei}
Length = 157
Score = 30.8 bits (70), Expect = 0.22
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 12/74 (16%)
Query: 99 HKDTGIYECQVSTTPHQAHY--IYLTVVVLVINDGKYLLVPEPET------DIIGGPEVF 150
H G E Q H + ++ DG+ LL+ + GG
Sbjct: 6 HHHMGTLEAQTQGPGSMQHTEQPRVGCGAAIVRDGRILLIKRKRAPEAGCWGLPGG---K 62
Query: 151 IENGSTINLTCVVR 164
++ + V R
Sbjct: 63 VDWLEPV-ERAVCR 75
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 30.8 bits (69), Expect = 0.24
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 14/85 (16%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFW---NHNEA---IISYDS-----QRGGVNVIT 195
V + G + L C + ++FW + NEA ++ + + G +
Sbjct: 9 GLVTLTEGLPVMLNC--TYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATL 66
Query: 196 EKGETTVSYLLIQKARPSDNGKYQC 220
K ++ L A+ SD+ Y C
Sbjct: 67 HKSSSSFH-LQKSSAQLSDSALYYC 90
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.50A {Bacillus
halodurans}
Length = 188
Score = 30.8 bits (70), Expect = 0.26
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 119 IYLTVVVLVINDGKYLLVPEPETD---IIGGPEVFIENGSTINLTCVVR 164
+ +V++ + LL+ +P GG +E G +I L V R
Sbjct: 3 LQRVTNCIVVDHDQVLLLQKPRRGWWVAPGG---KMEAGESI-LETVKR 47
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 31.3 bits (70), Expect = 0.27
Identities = 8/78 (10%), Positives = 19/78 (24%), Gaps = 5/78 (6%)
Query: 143 IIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTV 202
+ V + G C ++ + + + +
Sbjct: 168 FLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK-----VTSSRRFI 222
Query: 203 SYLLIQKARPSDNGKYQC 220
+ + D GKY+C
Sbjct: 223 ASFNVVNTTKRDAGKYRC 240
Score = 30.5 bits (68), Expect = 0.56
Identities = 11/98 (11%), Positives = 22/98 (22%)
Query: 15 GRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRHRDIHLLTTGRYTYT 74
G + T +Q ++C L G
Sbjct: 148 GYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRD 207
Query: 75 NDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTT 112
+ + + + + +D G Y C + T
Sbjct: 208 APLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTE 245
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 30.7 bits (69), Expect = 0.28
Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 13/84 (15%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFW---NHNEA---IISYDSQR----GGVNVITE 196
E+ G+ + + C + +FW + EA + G +
Sbjct: 7 TEMTATEGAIVQINC--TYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLS 64
Query: 197 KGETTVSYLLIQKARPSDNGKYQC 220
+ + LL+++ + D+ Y C
Sbjct: 65 RSKGYSY-LLLKELQMKDSASYLC 87
Score = 26.0 bits (57), Expect = 9.6
Identities = 11/45 (24%), Positives = 15/45 (33%)
Query: 75 NDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYI 119
RF + + L LK Q KD+ Y C V +
Sbjct: 55 EKGRFSSFLSRSKGYSYLLLKELQMKDSASYLCAVQASGGSYIPT 99
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 30.6 bits (69), Expect = 0.30
Identities = 8/70 (11%), Positives = 15/70 (21%), Gaps = 10/70 (14%)
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
+ + + C A + H E + + I
Sbjct: 15 VPKEKQVTICC----QGNYGAVEYQLHFEGSLFAVDRP------KPPERINKVKFYIPDM 64
Query: 211 RPSDNGKYQC 220
G+Y C
Sbjct: 65 NSRMAGQYSC 74
Score = 29.0 bits (65), Expect = 0.86
Identities = 17/121 (14%), Positives = 27/121 (22%), Gaps = 23/121 (19%)
Query: 101 DTGIYECQVSTTPHQAHY-IYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINL 159
G Y C + L +VV + D L V P + +G +
Sbjct: 68 MAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVH---------PGPEVISGEKVTF 118
Query: 160 TCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQ 219
C + G V + + G Y+
Sbjct: 119 YC---RLDTATSMFLLLKEGRSSHVQRGYGKVQAE----------FPLGPVTTAHRGTYR 165
Query: 220 C 220
C
Sbjct: 166 C 166
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor system;
2.75A {Mus musculus}
Length = 256
Score = 30.8 bits (70), Expect = 0.30
Identities = 23/181 (12%), Positives = 47/181 (25%), Gaps = 25/181 (13%)
Query: 63 IHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIY-- 120
+ +G F + + + L+ D+ +Y C VS + +
Sbjct: 49 LLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSAVYFCAVSAKGTGSKLSFGK 108
Query: 121 -LTVVVLVINDGKYLLVPEPETDIIG---------GPEVFIENGSTINLTC--------- 161
+ V G G G + L+C
Sbjct: 109 GAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNSHNYM 168
Query: 162 --VVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQ 219
+ + I++++ + G T + +L ++ A PS Y
Sbjct: 169 YWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKA-TRTTQEDF-FLTLESASPSQTSLYF 226
Query: 220 C 220
C
Sbjct: 227 C 227
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 30.6 bits (69), Expect = 0.32
Identities = 11/70 (15%), Positives = 18/70 (25%), Gaps = 10/70 (14%)
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
I GS + L C + + E + R + I
Sbjct: 16 ITQGSPVTLRC----QGGQETQEYRLYREKKTAPWITR------IPQELVKKGQFPIPSI 65
Query: 211 RPSDNGKYQC 220
G+Y+C
Sbjct: 66 TWEHTGRYRC 75
Score = 28.3 bits (63), Expect = 1.6
Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 18/125 (14%)
Query: 98 QHKDTGIYECQVSTTPHQ--AHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGS 155
+ TG Y C + L +VV L P + +G
Sbjct: 66 TWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQ---------PSPVVNSGG 116
Query: 156 TINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPSDN 215
+ L C + + + +E +SQ ++ + + PS
Sbjct: 117 NVTLQCDSQVAFDGFILCKEGEDEHPQCLNSQPHA-------RGSSRAIFSVGPVSPSRR 169
Query: 216 GKYQC 220
Y+C
Sbjct: 170 WWYRC 174
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 29.6 bits (67), Expect = 0.35
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFW------NHNEAIISYDSQRGGVNVITEKGET 200
+ E G ++ + CVVR S + +W + NE IS R V +G
Sbjct: 8 QRITKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGG-RYVETV--NRGSK 64
Query: 201 TVSYLLIQKARPSDNGKYQC 220
+ L I D+G Y+C
Sbjct: 65 SF-SLRINDLTVKDSGTYRC 83
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 29.4 bits (66), Expect = 0.36
Identities = 13/67 (19%), Positives = 19/67 (28%), Gaps = 4/67 (5%)
Query: 63 IHLLTTGRYTYTNDQRF--RVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIY 120
I + F RV + L + + +D G Y +V I
Sbjct: 46 ILEYNYNSTKTIFESEFKGRVYLEENN--GALHISNVRKEDKGTYYMRVLRETENELKIT 103
Query: 121 LTVVVLV 127
L V V
Sbjct: 104 LEVFDPV 110
Score = 27.1 bits (60), Expect = 2.3
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 8/95 (8%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFW--NHNEAIISYDSQRGGVNVITE-KGETTVS 203
P++ GS + L P I W N+ I+ Y+ +E KG +
Sbjct: 11 PDINAYTGSNVTLKIHKD-PLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLE 69
Query: 204 ----YLLIQKARPSDNGKYQCNPANSQAKSVMVNV 234
L I R D G Y + + +
Sbjct: 70 ENNGALHISNVRKEDKGTYYMRVLRETENELKITL 104
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 29.3 bits (66), Expect = 0.36
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 67 TTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTT-PHQAHYIYLTV 123
T R + +N +T+ ++ + D GIY C ++ + + +
Sbjct: 51 TDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNI 108
Score = 26.2 bits (58), Expect = 4.3
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 13 TTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
T R + +N +T+ ++ + D GIY C ++
Sbjct: 51 TDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGIT 94
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 30.8 bits (68), Expect = 0.39
Identities = 12/72 (16%), Positives = 19/72 (26%), Gaps = 12/72 (16%)
Query: 149 VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQ 208
V + S L+C + A W H + ++ L I+
Sbjct: 510 VSLAPNSRYYLSCPME---SRHATYSWRH---------KENVEQSCEPGHQSPNCILFIE 557
Query: 209 KARPSDNGKYQC 220
G Y C
Sbjct: 558 NLTAQQYGHYFC 569
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 30.4 bits (68), Expect = 0.43
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 13/95 (13%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFW---NHNEA------IISYDSQRGGVNVITEK 197
P + + G+ L C FS + W NH + + G +
Sbjct: 9 PALSLYEGADSGLRC--NFSTTMK-SVQWFQQNHRGRLITLFYLAQGTKENGRLKSTFNS 65
Query: 198 GETTVSYLLIQKARPSDNGKYQCNPANSQAKSVMV 232
E + L I+ A+ D+G Y C + + + ++
Sbjct: 66 KERYST-LHIKDAQLEDSGTYFCAAEDGGSGNKLI 99
Score = 26.5 bits (58), Expect = 7.4
Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 18/156 (11%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRHRDIHLLTTGRYTYTNDQRF 79
+ R + N TL +K Q +D+G Y C + L G T
Sbjct: 54 KENGRLKSTFNSKERYSTLHIKDAQLEDSGTYFCAAE--DGGSGNKLIFGTGT------- 104
Query: 80 RVINNPTSDDWT---LQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLV 136
+ P + QLK P+ +D+ + C + Q + I D L +
Sbjct: 105 LLSVKPNIQNPEPAVYQLKDPRSQDSTL--CLFTDFDSQINVPKTMESGTFITDKCVLDM 162
Query: 137 PEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAY 172
++ G + N + + TC F Y
Sbjct: 163 KAMDSKSNG--AIAWSNQT--SFTCQDIFKETNATY 194
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 30.4 bits (68), Expect = 0.44
Identities = 24/147 (16%), Positives = 44/147 (29%), Gaps = 30/147 (20%)
Query: 91 TLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGK-----YLLVPEPETDIIG 145
+ + + C V H+ + L+ V Y P PE
Sbjct: 78 AVPVSTQDWLSGERFTCTVQ---HEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEE---- 130
Query: 146 GPEVFIENGSTINLTCVVR-FSPEPPAYIFWNHNEAIISYDS--------QRGGVNVITE 196
+ S + L+C+VR F P I W + + + N
Sbjct: 131 ------LSLSRVTLSCLVRGFRPR-DIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGG 183
Query: 197 KGET--TVSYLLIQKARPSDNGKYQCN 221
G+T S + ++ A+ + + C
Sbjct: 184 DGDTFFVYSKMSVETAKWNGGTVFACM 210
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 30.3 bits (68), Expect = 0.46
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 12/95 (12%)
Query: 137 PEPETDIIGGPEVFI---------ENGSTINLTCVVR-FSPEPP-AYIFWNHNEAIISYD 185
P P +++GGP VF+ T +TCVV S E P W + + +
Sbjct: 13 PCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVH-N 71
Query: 186 SQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC 220
++ VS L + + +Y+C
Sbjct: 72 AKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKC 106
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 30.2 bits (68), Expect = 0.48
Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 16/85 (18%)
Query: 147 PEVFI--------ENGSTINLTCVVR-FSPEPPAYIFW--NHNEAIISYDSQRGGVNVIT 195
P + + GS NLTC + W + ++ + +R
Sbjct: 4 PRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERD-----L 58
Query: 196 EKGETTVSYLLIQKARPSDNGKYQC 220
+ S L + + C
Sbjct: 59 CGCYSVSSVLPGCAEPWNHGKTFTC 83
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 29.8 bits (67), Expect = 0.52
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 14/78 (17%)
Query: 154 GSTINLTCVVRFSPEPPAYIFW---NHNEA---IISYDS-----QRGGVNVITEKGETTV 202
G T L C + Y W E+ +I+ + G + K E
Sbjct: 15 GETAILNC--SYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKF 72
Query: 203 SYLLIQKARPSDNGKYQC 220
S L I ++P D+ Y C
Sbjct: 73 S-LHIADSQPGDSATYFC 89
Score = 28.7 bits (64), Expect = 1.4
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 76 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPH 114
D RF + N ++L + Q D+ Y C S
Sbjct: 58 DGRFTIFFNKREKKFSLHIADSQPGDSATYFCAASDNRI 96
Score = 27.9 bits (62), Expect = 2.0
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
D RF + N ++L + Q D+ Y C S
Sbjct: 58 DGRFTIFFNKREKKFSLHIADSQPGDSATYFCAAS 92
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 29.8 bits (67), Expect = 0.55
Identities = 23/161 (14%), Positives = 40/161 (24%), Gaps = 28/161 (17%)
Query: 78 RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIY-------LTVVVLVIND 130
+ P + L K D+G Y C S + LTVV +
Sbjct: 63 NLS-ASRPQDRQFILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKV 121
Query: 131 GK---YLLVPEPETDIIGGPEVFIENGSTINLTCVV-RFSPEPPAYIFWNHNEAIISYDS 186
+ P I + L C+ F P+ + W N +
Sbjct: 122 FPPEVAVFEPSEAE---------ISHTQKATLVCLATGFFPD-HVELSWWVNGKEVHSGV 171
Query: 187 QRGGVNVITEKGE-----TTVSYLLIQKAR-PSDNGKYQCN 221
+ + S L + + ++C
Sbjct: 172 CTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQ 212
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 29.9 bits (67), Expect = 0.56
Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 20/97 (20%)
Query: 139 PETDIIGGPEVFIE---------NGSTINLTCVVR-FSPEPP-AYIFWNHNEAIISYDSQ 187
P ++ GGP VFI T +TCVV S + P I W N +
Sbjct: 2 PAPNLEGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVH---- 57
Query: 188 RGGVNVITEKGE----TTVSYLLIQKARPSDNGKYQC 220
+ VS L IQ +++C
Sbjct: 58 -TAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKC 93
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 29.7 bits (67), Expect = 0.58
Identities = 28/174 (16%), Positives = 50/174 (28%), Gaps = 18/174 (10%)
Query: 63 IHLLTTGRYTYTNDQRFR-VINNPTSDDWTLQLKYPQHKDTGIYECQVS--TTPHQAHYI 119
IH T D + P+ ++++L L+ T +Y C ++ +
Sbjct: 45 IHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFF 104
Query: 120 YLTVVVLVINDGKYLLVPEPETDIIG---GPEVFIENGSTINLTCVVRFSPEPPAYIFW- 175
+ V+ + D + + G T L C + Y W
Sbjct: 105 GHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNC--SYENSAFDYFPWY 162
Query: 176 -----NHNEAII----SYDSQRGGVNVITEKGETTVSYLLIQKARPSDNGKYQC 220
+I D + G I L I ++P D+ Y C
Sbjct: 163 QQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFC 216
Score = 28.6 bits (64), Expect = 1.7
Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 5/53 (9%)
Query: 71 YTYTN-----DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHY 118
+ D RF + N +L + Q D+ Y C T
Sbjct: 175 SILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTNAYKVI 227
Score = 27.8 bits (62), Expect = 3.0
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 17 YTYTN-----DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ D RF + N +L + Q D+ Y C
Sbjct: 175 SILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAI 219
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 229
Score = 30.0 bits (68), Expect = 0.59
Identities = 30/142 (21%), Positives = 50/142 (35%), Gaps = 36/142 (25%)
Query: 91 TLQLKYPQHKDTGIYECQVSTTPHQAHYIY---------LTVVVLVINDGKYLLVPEPET 141
L++ P +D G Y C T Y +TV EP +
Sbjct: 76 VLKILAPSERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTV--------------EPRS 121
Query: 142 DIIGGPEVFIE-NGSTINLTCVVR-FSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGE 199
P VF+ NG+ + C+V+ F P+ I ++ I +D VI+ G
Sbjct: 122 QPHTKPSVFVMKNGTN--VACLVKEFYPK-DIRINLVSSKKITEFDPA----IVISPSG- 173
Query: 200 TTVSYLLIQKARPSDNGKYQCN 221
Y ++ + D+ C+
Sbjct: 174 ---KYNAVKLGKYEDSNSVTCS 192
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A
3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 29.7 bits (66), Expect = 0.60
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 13/90 (14%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFW---NHNEA------IISYDSQRGGVNVITEK 197
+ + G+ L C + + W N + + S + G + +
Sbjct: 11 SALSLHEGTGSALRCNFTTTMR---AVQWFRKNSRGSLINLFYLASGTKENGRLKSAFDS 67
Query: 198 GETTVSYLLIQKARPSDNGKYQCNPANSQA 227
E + L I+ A+ D+G Y C S
Sbjct: 68 KERYST-LHIRDAQLEDSGTYFCAAEASNT 96
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 29.9 bits (67), Expect = 0.66
Identities = 24/159 (15%), Positives = 45/159 (28%), Gaps = 24/159 (15%)
Query: 78 RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVP 137
+F +IN+ + TL + +D+ Y C G L V
Sbjct: 89 KF-LINHASLTLSTLTVTSAHPEDSSFYICSAR------DLTSGANNEQFFGPGTRLTVT 141
Query: 138 EPETDIIGGPEVFI--------ENGSTINLTCVV-RFSPEPPAYIFWNHNEAIISYDSQR 188
E + PEV + + L C+ F P+ + W N +
Sbjct: 142 ED-LKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD-HVELSWWVNGKEVHSGVST 199
Query: 189 GGVNVITEKGE-----TTVSYLLIQKAR-PSDNGKYQCN 221
+ + + S L + + ++C
Sbjct: 200 DPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQ 238
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 29.5 bits (66), Expect = 0.69
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 147 PEVFIENGSTINLTCVVR-FSPEPP-AYIFWNHNEAIISYDSQRGGVNVITEKGETTVSY 204
P+ + T +TCVV S E P W + + +++ VS
Sbjct: 11 PKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVH-NAKTKPREEQYNSTYRVVSV 69
Query: 205 LLIQKARPSDNGKYQC 220
L + + +Y+C
Sbjct: 70 LTVLHQDWLNGKEYKC 85
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 29.6 bits (66), Expect = 0.76
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 11/83 (13%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFW---NHNEA---IISYDSQRGGVN---VITEK 197
+ + G +L C S Y +W + E ++S S
Sbjct: 10 ESLSVPEGGMASLNC--TSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLN 67
Query: 198 GETTVSYLLIQKARPSDNGKYQC 220
+ L I+ ++PSD+ Y C
Sbjct: 68 KASLHVSLHIRDSQPSDSALYFC 90
Score = 28.1 bits (62), Expect = 1.9
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 74 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIY 120
+ RF N S +L ++ Q D+ +Y C S + A +
Sbjct: 57 KKEGRFTAHLNKASLHVSLHIRDSQPSDSALYFCAASEQNNYAQGLT 103
Score = 26.5 bits (58), Expect = 6.8
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 20 TNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
+ RF N S +L ++ Q D+ +Y C S
Sbjct: 57 KKEGRFTAHLNKASLHVSLHIRDSQPSDSALYFCAAS 93
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 29.7 bits (66), Expect = 0.77
Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 14/78 (17%)
Query: 154 GSTINLTCVVRFSPEPPAYIFW---NHNEA---IISYDS-----QRGGVNVITEKGETTV 202
G L C +S P ++ W + + + G + +K
Sbjct: 16 GENCVLQC--NYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDKDAKHS 73
Query: 203 SYLLIQKARPSDNGKYQC 220
+ L I D Y C
Sbjct: 74 T-LHITATLLDDTATYFC 90
Score = 28.1 bits (62), Expect = 2.0
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 76 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTT 112
+ R+ + + TL + DT Y C V
Sbjct: 59 NGRYSATLDKDAKHSTLHITATLLDDTATYFCVVGDR 95
Score = 28.1 bits (62), Expect = 2.2
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQV 55
+ R+ + + TL + DT Y C V
Sbjct: 59 NGRYSATLDKDAKHSTLHITATLLDDTATYFCVV 92
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 29.2 bits (65), Expect = 0.97
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 76 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYI 119
R RV + + +L + + DT Y C TT YI
Sbjct: 58 SGRLRVTLDTSKKSSSLLITASRAADTASYFCATDTTSGTYKYI 101
Score = 28.5 bits (63), Expect = 1.6
Identities = 10/48 (20%), Positives = 17/48 (35%)
Query: 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRHRDIHLLTTG 69
R RV + + +L + + DT Y C ++ TG
Sbjct: 58 SGRLRVTLDTSKKSSSLLITASRAADTASYFCATDTTSGTYKYIFGTG 105
Score = 27.3 bits (60), Expect = 3.6
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 15/85 (17%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFW---NHNEA---IISYDS-----QRGGVNVIT 195
+ I+ G + C + S + W N +I S G + V
Sbjct: 9 QALSIQEGENATMNCSYKTSIN---NLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTL 65
Query: 196 EKGETTVSYLLIQKARPSDNGKYQC 220
+ + + S LLI +R +D Y C
Sbjct: 66 DTSKKSSS-LLITASRAADTASYFC 89
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 28.5 bits (64), Expect = 0.97
Identities = 15/87 (17%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAY-IFW---NHNEA---IISYDS------QRGGVNV 193
+ + +T+ + C + + +Y +FW + +I DS G ++
Sbjct: 8 TSISVMEKTTVTMDC--VYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSL 65
Query: 194 ITEKGETTVSYLLIQKARPSDNGKYQC 220
+K ++++ L+I + D+ Y C
Sbjct: 66 NFQKPKSSIG-LIITATQIEDSAVYFC 91
>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus
musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A
1d9k_A*
Length = 110
Score = 28.0 bits (63), Expect = 1.1
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 76 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTT 112
D RF + N +L + Q D+ Y C S
Sbjct: 57 DGRFTIFFNKREKKLSLHIADSQPGDSATYFCAASAN 93
Score = 27.6 bits (62), Expect = 1.4
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 56
D RF + N +L + Q D+ Y C S
Sbjct: 57 DGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAS 91
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 28.3 bits (62), Expect = 1.1
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 154 GSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKARPS 213
G L C V++ P + N R E+ + L + P+
Sbjct: 26 GDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDR--QTSWKEEKNISFFILHFEPVLPN 83
Query: 214 DNGKYQCNPANS----QAKSVMVNV 234
DNG Y+C+ ++ S + V
Sbjct: 84 DNGSYRCSANFQSNLIESHSTTLYV 108
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 29.2 bits (65), Expect = 1.1
Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 8/109 (7%)
Query: 78 RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYI---YLTVVVLVINDGKYL 134
RF P++ +L+++ + D+ +Y C S Q ++VL
Sbjct: 90 RFSA-ECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKN--- 145
Query: 135 LVPEPETDIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIIS 183
V PE + E I + L C+ + W N +
Sbjct: 146 -VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH 193
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 29.5 bits (66), Expect = 1.1
Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 15/94 (15%)
Query: 133 YLLVPEPETDIIGGPEVFIENGSTINLTCVVR-FSPEPPAYIFWNHNEAIISYDSQRGGV 191
+LL P E + + LTC+ R FSP+ + W + +
Sbjct: 353 HLLPPPSEE---------LALNELVTLTCLARGFSPK-DVLVRWLQGSQELPREKYLTWA 402
Query: 192 NVITEKGE----TTVSYLLIQKARPSDNGKYQCN 221
+ S L + + C
Sbjct: 403 SRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCM 436
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 29.1 bits (65), Expect = 1.2
Identities = 21/146 (14%), Positives = 46/146 (31%), Gaps = 3/146 (2%)
Query: 78 RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVP 137
++ + P+ + ++L L+ T +Y C + + V
Sbjct: 61 GYKA-SRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVT 119
Query: 138 EPETDIIGGPEVFIENGSTINLTCVVR-FSPEPPAYIFWNHNEAIISYDSQRGGVNVITE 196
P+ + + I N L C+ R F P+ +W + + + S S +
Sbjct: 120 PPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESN 179
Query: 197 KGETTVSYLLIQKAR-PSDNGKYQCN 221
S L + + ++C
Sbjct: 180 YSYCLSSRLRVSATFWHNPRNHFRCQ 205
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 28.0 bits (63), Expect = 1.2
Identities = 15/87 (17%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAY-IFW---NHNEA---IISYDS------QRGGVNV 193
+ + +T+ + C + + +Y +FW + +I DS G ++
Sbjct: 8 TSISVMEKTTVTMDC--VYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSL 65
Query: 194 ITEKGETTVSYLLIQKARPSDNGKYQC 220
+K ++++ L+I + D+ Y C
Sbjct: 66 NFQKPKSSIG-LIITATQIEDSAVYFC 91
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 28.7 bits (64), Expect = 1.3
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 8/70 (11%)
Query: 151 IENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLIQKA 210
+++ T+ L C + F H E + + + G + + I +
Sbjct: 19 VKSEETVILQC----WSDVMFEHFLLHREGMFNDTLRLIG----EHHDGVSKANFSISRM 70
Query: 211 RPSDNGKYQC 220
G Y+C
Sbjct: 71 TQDLAGTYRC 80
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure
initiative II(PSI II), nysgxrc; 1.76A {Bacillus
thuringiensis str} PDB: 3smd_A
Length = 153
Score = 28.2 bits (63), Expect = 1.5
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 119 IYLTVVVLVINDGKYLLVPEPETD---IIGGPEVFIENGSTINLTCVVR 164
+V ++ N+ +L P + + G IE G T VVR
Sbjct: 20 FXPSVAAVIKNEQGEILFQYPGGEYWSLPAG---AIELGETPE-EAVVR 64
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus
musculus} PDB: 3c60_A
Length = 200
Score = 28.4 bits (63), Expect = 1.5
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 12/83 (14%)
Query: 154 GSTINLTCVVRFSPEPPAYIFW---NHNEA---IISYDSQRGGVNV----ITEKGETTVS 203
+ + C +S +FW E ++ + + T TT
Sbjct: 15 NDFLFINC--TYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSF 72
Query: 204 YLLIQKARPSDNGKYQCNPANSQ 226
+L + D+ Y C +
Sbjct: 73 HLQKTSVQEIDSAVYYCAANSGT 95
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 2.55A
{Bacillus thuringiensis str}
Length = 171
Score = 28.2 bits (63), Expect = 1.6
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 10/66 (15%)
Query: 105 YECQVSTTPHQAHY--IYLTVVVLVINDGKYLLV---PEPET-DIIGGPEVFIENGSTIN 158
+ C+ + + + V ++I D K LLV + GG +ENG T+
Sbjct: 6 FICKFNRKRRLYIENIMQVRVTGILIEDEKVLLVKQKVANRDWSLPGG---RVENGETL- 61
Query: 159 LTCVVR 164
++R
Sbjct: 62 EEAMIR 67
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer,
putative NUDI hydrolase, structural genomics, unknown
function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1
PDB: 1jrk_A 1k26_A
Length = 156
Score = 27.9 bits (62), Expect = 1.7
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Query: 121 LTVVVLVINDGKYLLVPEPETD---IIGGPEVFIENGSTINLTCVVR 164
+ +++ +GK LLV GG +E+ T + V R
Sbjct: 2 IVTSGVLVENGKVLLVKHKRLGVYIYPGG---HVEHNETP-IEAVKR 44
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 28.3 bits (63), Expect = 2.0
Identities = 20/150 (13%), Positives = 36/150 (24%), Gaps = 27/150 (18%)
Query: 89 DWTLQLKYPQHKDTGIYECQVSTTPHQAHYIY-------LTVVVLVINDGK---YLLVPE 138
D L+L+ C S LTV+ + N + P
Sbjct: 73 DTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPS 132
Query: 139 PETDIIGGPEVFIENGSTINLTCVV-RFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEK 197
I + L C+ F P+ + W N + + +
Sbjct: 133 EAE---------ISHTQKATLVCLATGFYPD-HVELSWWVNGKEVHSGVSTDPQPLKEQP 182
Query: 198 GE-----TTVSYLLIQKAR-PSDNGKYQCN 221
S L + + ++C
Sbjct: 183 ALNDSRYALSSRLRVSATFWQNPRNHFRCQ 212
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP:
d.113.1.1
Length = 153
Score = 27.9 bits (62), Expect = 2.0
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 121 LTVVVLVINDGKYLLVPEPET------DIIGGPEVFIENGSTINLTCVVR 164
+TV ++ D KYLLV E + G +E G +I + R
Sbjct: 9 VTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAG---HLEPGESI-IQACSR 54
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 27.2 bits (61), Expect = 2.2
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 12/83 (14%)
Query: 147 PEVFIENGSTINLTCVVRFSPEPPAYIFW---NHNEA------IISYDSQRGGVNVITEK 197
+ + G+ L C F+ + W N + + S + G + +
Sbjct: 9 SALSLHEGTDSALRC--NFTTTMR-SVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDS 65
Query: 198 GETTVSYLLIQKARPSDNGKYQC 220
S L I+ A+ D+G Y C
Sbjct: 66 ERARYSTLHIRDAQLEDSGTYFC 88
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 28.1 bits (62), Expect = 2.3
Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 4/107 (3%)
Query: 78 RFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVP 137
+F V P +TL+++ +D+ +Y C S A + L + + + P
Sbjct: 65 QFSV-ERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFP 123
Query: 138 EPETDIIGGPEVFIENGSTINLTCVV-RFSPEPPAYIFWNHNEAIIS 183
PE + E I + L C+ F P+ + W N +
Sbjct: 124 -PEVAVFEPSEAEISHTQKATLVCLATGFYPD-HVELSWWVNGKEVH 168
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 28.3 bits (63), Expect = 2.3
Identities = 28/179 (15%), Positives = 50/179 (27%), Gaps = 35/179 (19%)
Query: 54 QVSFVRHRDIHLLTTGR---------YTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGI 104
V + + T + T + DW
Sbjct: 273 DVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPI----QHQDW---------MSGKE 319
Query: 105 YECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVR 164
++C+V+ A + V P E + + LTC+V
Sbjct: 320 FKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPP------PEEEMTKK--QVTLTCMVT 371
Query: 165 -FSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTV-SYLLIQKARPSDNGKYQCN 221
F PE Y+ W +N + + V+ G + S L ++K + Y C+
Sbjct: 372 DFMPE-DIYVEWTNNGKTEL--NYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCS 427
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 27.8 bits (61), Expect = 2.6
Identities = 12/116 (10%), Positives = 32/116 (27%), Gaps = 38/116 (32%)
Query: 73 YTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGK 132
Y+++ + +++ P + E + K
Sbjct: 124 YSSEVKENSVDSDDKAKVP-----PLIRIVSGLELSDTKQK----------------GKK 162
Query: 133 YLLVP-EP-ET--------DIIGGPEVFIENGSTINLTCVVRFSPEPPAYIFWNHN 178
+L++ EP E +I+ ++N + + + FW+
Sbjct: 163 FLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCT-------FWDAI 211
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human
cytomegalovirus, PP65, T cell receptor (TCR), immune
response, public response; 2.80A {Homo sapiens}
Length = 199
Score = 27.6 bits (61), Expect = 2.6
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSF 57
R N L +K Q +D+ Y C +
Sbjct: 58 KGRISATLNTKEGYSYLYIKGSQPEDSATYLCARNT 93
Score = 27.6 bits (61), Expect = 3.0
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 12/77 (15%)
Query: 154 GSTINLTCVVRFSPEPPAYIFW---NHNEA---IISYDSQRGGVNV----ITEKGETTVS 203
G + N TC F + W ++ + T + S
Sbjct: 15 GDSTNFTC--SFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYS 72
Query: 204 YLLIQKARPSDNGKYQC 220
YL I+ ++P D+ Y C
Sbjct: 73 YLYIKGSQPEDSATYLC 89
Score = 27.6 bits (61), Expect = 3.0
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 76 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPH 114
R N L +K Q +D+ Y C +T
Sbjct: 58 KGRISATLNTKEGYSYLYIKGSQPEDSATYLCARNTGNQ 96
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune
system/receptor, immune system/receptor/complex, TCR,
MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D
2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Length = 215
Score = 27.6 bits (61), Expect = 3.1
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 76 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSTTPHQ 115
+R D +L + Q DTG+Y C + +
Sbjct: 58 LKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQGN 97
Score = 27.3 bits (60), Expect = 4.1
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 22 DQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQ 54
+R D +L + Q DTG+Y C
Sbjct: 58 LKRLTFQFGDARKDSSLHITAAQPGDTGLYLCA 90
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 27.9 bits (61), Expect = 3.3
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 139 PETDIIGGPE-VFIENGSTINLTCVVRFSPEPPAYIFWNHNEAIISYDSQRGGVNV 193
P++ P+ I GS I CV + + + N +I D + + +
Sbjct: 197 PDSQTKVFPQDKVILVGSDITFCCVSQEKVLS--ALIGHTNCPLIHLDGENVAIKI 250
>1yjd_C TP44, T-cell-specific surface glycoprotein CD28; IGSF, CD28
homodimer, immune system-signaling protein comple; HET:
NAG; 2.70A {Homo sapiens} SCOP: b.1.1.1
Length = 140
Score = 27.0 bits (59), Expect = 3.5
Identities = 9/57 (15%), Positives = 20/57 (35%)
Query: 2 SFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFV 58
S V ++ + + + F ++ T L+ T IY C++ +
Sbjct: 45 SAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIEVM 101
Score = 26.7 bits (58), Expect = 4.2
Identities = 9/55 (16%), Positives = 19/55 (34%)
Query: 56 SFVRHRDIHLLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVS 110
S V ++ + + + F ++ T L+ T IY C++
Sbjct: 45 SAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIE 99
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 27.7 bits (61), Expect = 3.6
Identities = 15/80 (18%), Positives = 23/80 (28%), Gaps = 14/80 (17%)
Query: 151 IENGSTINLTCVVR-----FSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYL 205
++ S CV++ + YI W N I + T T S
Sbjct: 15 VQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQ-------YTIINRTASS-- 65
Query: 206 LIQKARPSDNGKYQCNPANS 225
+ S N + CN
Sbjct: 66 VTFTDIASLNIQLTCNILTF 85
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen
condensation reaction, transfera; HET: CER; 1.70A
{Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A
3s20_A* 3fk5_A
Length = 345
Score = 27.2 bits (61), Expect = 5.1
Identities = 6/60 (10%), Positives = 15/60 (25%), Gaps = 12/60 (20%)
Query: 5 RHRDIHLLTTGRY----TYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRH 60
+++ + T T+ + + + D GI+ R
Sbjct: 9 LFQNVSIAGLAHIDAPHTLTSKEINERLQ--PTYDRLGIKTDVLGDVAGIHA------RR 60
Score = 26.8 bits (60), Expect = 6.6
Identities = 5/52 (9%), Positives = 14/52 (26%), Gaps = 6/52 (11%)
Query: 59 RHRDIHLLTTGRY----TYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYE 106
+++ + T T+ + + + D GI+
Sbjct: 9 LFQNVSIAGLAHIDAPHTLTSKEINERLQ--PTYDRLGIKTDVLGDVAGIHA 58
>2iiz_A Melanin biosynthesis protein TYRA, putative; NP_716371.1, putative
melanin biosynthesis protein TYRA, STR genomics, PSI-2;
HET: MSE HEM; 2.30A {Shewanella oneidensis} SCOP:
d.58.4.14 PDB: 2hag_A*
Length = 312
Score = 27.2 bits (60), Expect = 5.2
Identities = 7/58 (12%), Positives = 13/58 (22%), Gaps = 3/58 (5%)
Query: 111 TTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCVVRFSPE 168
H +YL + ND + ++ + S V
Sbjct: 15 CAEGNLHSVYL---MFNANDNVESQLRPCIANVAQYIYELTDQYSDSAFNGFVAIGAN 69
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC;
1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H
2mcp_H*
Length = 220
Score = 26.7 bits (60), Expect = 5.2
Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 17/89 (19%)
Query: 154 GSTINLTCVVR-FSPEPPAYIFWNHNEAIISYDS-----QRGGVNVITEKGETTVSYLLI 207
+ + C++ + P + W + I+ + GG T + L +
Sbjct: 137 SDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRY-------TMSNQLTL 189
Query: 208 QKARPSDNGKYQCN---PANSQAKSVMVN 233
+ +C+ +N + + VN
Sbjct: 190 PAVECPEGESVKCSVQHDSNP-VQELDVN 217
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 26.9 bits (59), Expect = 5.3
Identities = 22/143 (15%), Positives = 46/143 (32%), Gaps = 11/143 (7%)
Query: 85 PTSDDWTLQLKYPQHKDTGIYECQVSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDII 144
P TL+++ + D+ +Y C S ++ T + ++ + V PE +
Sbjct: 95 PEGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKN---VFPPEVAVF 151
Query: 145 GGPEVFIENGSTINLTCVV-RFSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGE---- 199
E I + L C+ F P + W N + + +
Sbjct: 152 EPSEAEISHTQKATLVCLATGFYP-DHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSR 210
Query: 200 -TTVSYLLIQKAR-PSDNGKYQC 220
+ S L + + ++C
Sbjct: 211 YSLSSRLRVSATFWQNPRNHFRC 233
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 26.7 bits (59), Expect = 5.3
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 11/80 (13%)
Query: 147 PEVFIENGSTINLTCVVR-FSPEPP-AYIFWNHNEAIISYDSQRGGVNVITEKGE----T 200
P+ + T +TCVV S + P W ++ + E+
Sbjct: 11 PKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVH-----TAQTKPREEQFNSTFR 65
Query: 201 TVSYLLIQKARPSDNGKYQC 220
+VS L I + +++C
Sbjct: 66 SVSELPIMHQDWLNGKEFKC 85
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; 1.63A {Streptococcus pneumoniae}
Length = 154
Score = 26.6 bits (59), Expect = 5.6
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 123 VVVLVINDGKYLLVPEPET-DIIGGPEVFIENGSTINLTCVVR 164
L++ + K L+ + IGG I+ + VVR
Sbjct: 22 ATALIVQNHKLLVTKDKGKYYTIGG---AIQVNEST-EDAVVR 60
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 27.2 bits (59), Expect = 5.6
Identities = 9/87 (10%), Positives = 26/87 (29%), Gaps = 6/87 (6%)
Query: 151 IENGSTINLTCVVR---FSPEPPAYIFWNHNEAIISYDSQRGGVNVITEKGETTVSYLLI 207
+ G I +C+++ +P I W + Q+ + E+ ++ +
Sbjct: 12 VHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQ---ESIITLPHL 68
Query: 208 QKARPSDNGKYQCNPANSQAKSVMVNV 234
+ + + V +
Sbjct: 69 NHTQAFLSCSLNWGNSLQILDQVELRA 95
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II),
NYSGXRC, structural genomics; 2.02A {Clostridium
perfringens atcc 13124}
Length = 159
Score = 26.1 bits (57), Expect = 7.7
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 6/54 (11%)
Query: 109 VSTTPHQAHYIYLTVVVLVINDGKYLLVPEPETDIIGGPEVFIENGSTINLTCV 162
+S H TV V ++ K LL + + IE C+
Sbjct: 1 MSLNRH------FTVSVFIVCKDKVLLHLHKKAKKMLPLGGHIEVNELPEEACI 48
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 26.1 bits (57), Expect = 8.2
Identities = 12/62 (19%), Positives = 21/62 (33%)
Query: 11 LLTTGRYTYTNDQRFRVINNPTSDDWTLQLKYPQHKDTGIYECQVSFVRHRDIHLLTTGR 70
+ G + N++ + TL L +D +Y C + LT G+
Sbjct: 45 YVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYCILPLAGGTSYGKLTFGQ 104
Query: 71 YT 72
T
Sbjct: 105 GT 106
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.418
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,675,719
Number of extensions: 216493
Number of successful extensions: 1918
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1403
Number of HSP's successfully gapped: 723
Length of query: 236
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 145
Effective length of database: 4,160,982
Effective search space: 603342390
Effective search space used: 603342390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.8 bits)