BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10362
(388 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 192 bits (489), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 89/105 (84%), Positives = 95/105 (90%), Gaps = 1/105 (0%)
Query: 219 RYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNP 278
RYF R+G++IDCVVMKNNE+GRSRGFGFVTFADP NV V+QN PHTLDGRTIDPKPCNP
Sbjct: 25 RYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTIDPKPCNP 84
Query: 279 RTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
RTLQKPKK + KVFLGGLPSNVTETDLRTFFNRYGKV EVVIM
Sbjct: 85 RTLQKPKKGGGY-KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIM 128
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 82/172 (47%), Gaps = 37/172 (21%)
Query: 18 QQVEIKKAEPRDASNKGND-----------MGN--NQWGPPQSGGPMAMGPNMGMGTPSG 64
+QVEIKKAEPRD S N +GN + WGP + M G N MG P
Sbjct: 164 KQVEIKKAEPRDGSGGQNSNNSTVGGAYGKLGNECSHWGPHHAPINMMQGQNGQMGGPPL 223
Query: 65 PMAGMTPMGPGNMMQGYQGWGSTPQTQGFPGQWAPSSQTPMNGYANPSAPQGYTNWGAPP 124
M P+G NMM GYQGWG++PQ Q + GY N S P Y WGAPP
Sbjct: 224 NM----PIGAPNMMPGYQGWGTSPQQQQY-------------GYGN-SGPGSYQGWGAPP 265
Query: 125 GPQAPPQWGSSYGAPPQQTGYGSYG-----PTSGAPQSGYGNNWN-WNMPQN 170
GPQ PP S+Y P Q GYG Y T G +WN WNMP N
Sbjct: 266 GPQGPPPQWSNYAGPQQTQGYGGYDMYNSTSTGAPSGPSGGGSWNSWNMPPN 317
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 220 YFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPR 279
+F+RYG+V + V+M + E +SRGFGF++F + ++V V L+G+ ++ K PR
Sbjct: 115 FFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPR 174
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 91/144 (63%), Gaps = 14/144 (9%)
Query: 194 NPSGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPN 253
N G GK + T + + YFS+YGEV+DCV+MK+ T +SRGFGFV F DPN
Sbjct: 3 NQGGDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 62
Query: 254 NVGVVIQNCPHTLDGRTIDPKPCNPRTLQ----KPK----------KNSSFPKVFLGGLP 299
VG V+ + PHTLDGR IDPKPC PR +Q +P+ +NS K+F+GG+P
Sbjct: 63 CVGTVLASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIP 122
Query: 300 SNVTETDLRTFFNRYGKVMEVVIM 323
N ET+L+ +FNR+G V EVV++
Sbjct: 123 HNCGETELKEYFNRFGVVTEVVMI 146
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ YF+R+G V + V++ + E R RGFGF+TF D +V + H + G+ ++ K
Sbjct: 131 KEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 190
Query: 278 PR 279
PR
Sbjct: 191 PR 192
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT 327
K+F+GGL + T+ LR++F++YG+V++ VIM +T
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKT 46
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 82/117 (70%), Gaps = 13/117 (11%)
Query: 220 YFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPR 279
YFS+YGEV+DCV+MK+ T +SRGFGFV F DPN VG V+ + PHTLDGR IDPKPC PR
Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
Query: 280 TLQ----KPKK---------NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
+Q +PK+ NS K+F+GG+P N ET+LR +F ++G V EVV++
Sbjct: 89 GMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMI 145
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ YF ++G V + V++ + E R RGFGF+TF D +V + H + G+ ++ K
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 189
Query: 278 PR 279
PR
Sbjct: 190 PR 191
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT 327
K+F+GGL + T+ LR++F++YG+V++ VIM +T
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKT 46
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 82/117 (70%), Gaps = 13/117 (11%)
Query: 220 YFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPR 279
YFS+YGEV+DCV+MK+ T +SRGFGFV F DPN VG V+ + PHTLDGR IDPKPC PR
Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
Query: 280 TLQ----KPKK---------NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
+Q +PK+ +S K+F+GG+P N ET+LR +F ++G V EVV++
Sbjct: 89 GMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMI 145
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ YF ++G V + V++ + E R RGFGF+TF D +V + H + G+ ++ K
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 189
Query: 278 PR 279
PR
Sbjct: 190 PR 191
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT 327
K+F+GGL + T+ LR++F++YG+V++ VIM +T
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKT 46
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 3 EDEQGL----TYYITCFLLQQVEIKKAEPRDASNKG-NDMGNNQWG 43
EDEQ + + + ++VE+K+AEPRD+ N+ G +QWG
Sbjct: 162 EDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWG 207
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 71/107 (66%), Gaps = 6/107 (5%)
Query: 220 YFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPR 279
YF ++GEV+DC VM+++ TGRSRGFGF+TF +P V V+ H LDG+ IDPK PR
Sbjct: 182 YFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPR 240
Query: 280 TLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
Q+ K+F+GG+P + TE + R FFN++G+V++ +M +
Sbjct: 241 EEQEKT-----AKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDK 282
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ +F+++G V+D +M + +TGR RGFGFVT+ + + V + T+ G+ ++ K
Sbjct: 264 RNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRAT 323
Query: 278 PR 279
P+
Sbjct: 324 PK 325
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT 327
K+F+GGL T+ LR +F ++G+V++ +M T
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDST 199
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 74/110 (67%), Gaps = 1/110 (0%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ YFS++GE+ +C+VM++ T RSRGFGFVTFADP +V V+ H LD +TIDPK
Sbjct: 38 RDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAF 97
Query: 278 PRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT 327
PR Q PK + K+F+GGL +N D++ +F ++GKV + ++M +T
Sbjct: 98 PRRAQ-PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKT 146
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 212 TYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTI 271
T + ++YF ++G+V D ++M + T R RGFGFVTF + + V V + H ++ + +
Sbjct: 121 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV 180
Query: 272 DPKPCNPRTLQKP 284
+ K P+ + P
Sbjct: 181 ECKKAQPKEVMFP 193
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM-SPRTIRA 330
K+F+GGL + LR +F+++G++ E ++M P T R+
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRS 61
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 74/110 (67%), Gaps = 1/110 (0%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ YFS++GE+ +C+VM++ T RSRGFGFVTFADP +V V+ H LD +TIDPK
Sbjct: 38 RDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAF 97
Query: 278 PRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT 327
PR Q PK + K+F+GGL +N D++ +F ++GKV + ++M +T
Sbjct: 98 PRRAQ-PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKT 146
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 212 TYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTI 271
T + ++YF ++G+V D ++M + T R RGFGFVTF + + V V + H ++ + +
Sbjct: 121 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV 180
Query: 272 DPKPCNPRTLQKP 284
+ K P+ + P
Sbjct: 181 ECKKAQPKEVMFP 193
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM-SPRTIRA 330
K+F+GGL + LR +F+++G++ E ++M P T R+
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRS 61
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ YF ++GEV +C+VM++ T RSRGFGFVTF D V V+ H LD +TIDPK
Sbjct: 37 REYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 96
Query: 278 PRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT 327
PR Q PK + K+F+GGL N T D++ +F ++GKV + ++M +T
Sbjct: 97 PRRAQ-PKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKT 145
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 212 TYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTI 271
T + + YF ++G+V D ++M + T R RGFGFVTF + V V + H ++ + +
Sbjct: 120 TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMV 179
Query: 272 DPKPCNPRTLQKP 284
+ K P+ + P
Sbjct: 180 ECKKAQPKEVMSP 192
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM-SPRTIRA 330
K+F+GGL T+ LR +F ++G+V E ++M P T R+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS 60
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ YF ++GEV +C+VM++ T RSRGFGFVTF D V V+ H LD +TIDPK
Sbjct: 37 REYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 96
Query: 278 PRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT 327
PR Q PK + K+F+GGL N T D++ +F ++GKV + ++M +T
Sbjct: 97 PRRAQ-PKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKT 145
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 212 TYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTI 271
T + + YF ++G+V D ++M + T R RGFGFVTF + V V + H ++ + +
Sbjct: 120 TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMV 179
Query: 272 DPKPCNPRTLQKP 284
+ K P+ + P
Sbjct: 180 ECKKAQPKEVMSP 192
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM-SPRTIRA 330
K+F+GGL T+ LR +F ++G+V E ++M P T R+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS 60
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ YF ++GEV +C+VM++ T RSRGFGFVTF D V V+ H LD +TIDPK
Sbjct: 37 REYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 96
Query: 278 PRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT 327
PR Q PK + K+F+GGL N T D++ +F ++GKV + ++M +T
Sbjct: 97 PRRAQ-PKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKT 145
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 212 TYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTI 271
T + ++YF ++G+V D ++M + T R RGFGFVTF + V V + H ++ + +
Sbjct: 120 TTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMV 179
Query: 272 DPKPCNPRTLQKP 284
+ K P+ + P
Sbjct: 180 ECKKAQPKEVMSP 192
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM-SPRTIRA 330
K+F+GGL T+ LR +F ++G+V E ++M P T R+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS 60
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 76/121 (62%), Gaps = 1/121 (0%)
Query: 210 YGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGR 269
Y T + +++F ++GE++D VVMK+ +T RSRGFGF+T++ + V PH +DGR
Sbjct: 26 YRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNARPHKVDGR 85
Query: 270 TIDPKPCNPRT-LQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTI 328
++PK PRT + +P+ ++ K+F+GG+ + E DLR +F +YG V+ I+ +
Sbjct: 86 VVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKET 145
Query: 329 R 329
R
Sbjct: 146 R 146
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 220 YFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPR 279
YF +YG V+ ++ + ET + RGF FV F D + V + + H + G+ ID K P+
Sbjct: 127 YFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQIRGKHIDVKKALPK 186
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM-SPRTIRA 330
K+F+GGL T+ L+ F ++G++++VV+M P+T R+
Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRS 57
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ YF RYG++ + +VMK+ T RSRGFGFVTF+DPN+V V+ H LDG+ +DPK
Sbjct: 46 RDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAF 105
Query: 278 PRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
PR PK + K+F+GGL + T D++++F ++G + + ++M
Sbjct: 106 PRRAH-PKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLM 150
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ YF ++G + D ++M + +T R RGFGFVTF + V V + H ++ + ++ K
Sbjct: 135 KSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQ 194
Query: 278 PRTLQKP 284
P+ + P
Sbjct: 195 PKEVMLP 201
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIR 329
K+F+GGL + LR +F RYG + E ++M T R
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTR 67
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 91/185 (49%), Gaps = 17/185 (9%)
Query: 180 PPAGGATGAAPTGPNPSG--PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNE 237
PP+G GA N S AGK ++ T + + YF+++GEV+DC + +
Sbjct: 46 PPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN 105
Query: 238 TGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPRTLQKPKKNSSFPKVFLGG 297
TGRSRGFGF+ F D +V V+ H LDGR IDPK K K+F+GG
Sbjct: 106 TGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAM------KKDPVKKIFVGG 159
Query: 298 L-PSNVTETDLRTFFNRYGKVMEVVI-MSPR-TIRAGITRVPTQELPVQKEATAVQQVLR 354
L P + TE +R +F +G++ + + M P+ R G + KE V++VL
Sbjct: 160 LNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF------KEEEPVKKVLE 213
Query: 355 RSSTT 359
+ T
Sbjct: 214 KKFHT 218
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ YF +GE+ + + + + RGF F+TF + V V++ HT+ G + K
Sbjct: 171 REYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQ 230
Query: 278 PRTL 281
P+ +
Sbjct: 231 PKEV 234
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Query: 209 AYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDG 268
++ T + + +F ++G + DCVVM++ T RSRGFGFVT+A V + PH +DG
Sbjct: 22 SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTTPHKVDG 81
Query: 269 RTIDPKPCNPR-TLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
R ++PK R Q+P + + K+F+GG+ + E LR +F +YGK+ + IM+ R
Sbjct: 82 RVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%)
Query: 212 TYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTI 271
T + + YF +YG++ +M + +G+ RGF FVTF D ++V ++ HT+ G
Sbjct: 116 TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNC 175
Query: 272 DPKPCNPR 279
+ + P+
Sbjct: 176 EVRKALPK 183
Score = 35.4 bits (80), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 284 PKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM-SPRTIRA 330
PK+ K+F+GGL T+ LR+ F ++G + + V+M P T R+
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 54
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Query: 209 AYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDG 268
++ T + + +F ++G + DCVVM++ T RSRGFGFVT+A V + PH +DG
Sbjct: 22 SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDG 81
Query: 269 RTIDPKPCNPR-TLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
R ++PK R Q+P + + K+F+GG+ + E LR +F +YGK+ + IM+ R
Sbjct: 82 RVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%)
Query: 212 TYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTI 271
T + + YF +YG++ +M + +G+ RGF FVTF D ++V ++ HT++G
Sbjct: 116 TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNC 175
Query: 272 DPKPC 276
+ +
Sbjct: 176 EVRKA 180
Score = 35.4 bits (80), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 282 QKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM-SPRTIRA 330
+ PK+ K+F+GGL T+ LR+ F ++G + + V+M P T R+
Sbjct: 5 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 54
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Query: 209 AYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDG 268
++ T + + +F ++G + DCVVM++ T RSRGFGFVT+A V + PH +DG
Sbjct: 22 SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDG 81
Query: 269 RTIDPKPCNPR-TLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
R ++PK R Q+P + + K+F+GG+ + E LR +F +YGK+ + IM+ R
Sbjct: 82 RVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%)
Query: 212 TYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTI 271
T + + YF +YG++ +M + +G+ RGF FVTF D ++V ++ HT++G
Sbjct: 116 TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNC 175
Query: 272 DPKPC 276
+ +
Sbjct: 176 EVRKA 180
Score = 35.4 bits (80), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 282 QKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM-SPRTIRA 330
+ PK+ K+F+GGL T+ LR+ F ++G + + V+M P T R+
Sbjct: 5 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 54
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Query: 209 AYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDG 268
++ T + + +F ++G + DCVVM++ T RSRGFGFVT+A V + PH +DG
Sbjct: 22 SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDG 81
Query: 269 RTIDPKPCNPR-TLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
R ++PK R Q+P + + K+F+GG+ + E LR +F +YGK+ + IM+ R
Sbjct: 82 RVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%)
Query: 212 TYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTI 271
T + + YF +YG++ +M + +G+ RGF FVTF D ++V ++ HT++G
Sbjct: 116 TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNC 175
Query: 272 DPKPC 276
+ +
Sbjct: 176 EVRKA 180
Score = 35.4 bits (80), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 282 QKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM-SPRTIRA 330
+ PK+ K+F+GGL T+ LR+ F ++G + + V+M P T R+
Sbjct: 5 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 54
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Query: 209 AYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDG 268
++ T + + +F ++G + DCVVM++ T RSRGFGFVT+A V + PH +DG
Sbjct: 22 SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDG 81
Query: 269 RTIDPKPCNPR-TLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
R ++PK R Q+P + + K+F+GG+ + E LR +F +YGK+ + IM+ R
Sbjct: 82 RVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%)
Query: 212 TYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTI 271
T + + YF +YG++ +M + +G+ RGF FVTF D ++V ++ HT++G
Sbjct: 116 TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNC 175
Query: 272 DPKPC 276
+ +
Sbjct: 176 EVRKA 180
Score = 35.0 bits (79), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 282 QKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM-SPRTIRA 330
+ PK+ K+F+GGL T+ LR+ F ++G + + V+M P T R+
Sbjct: 5 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 54
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Query: 209 AYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDG 268
++ T + + +F ++G + DCVVM++ T RSRGFGFVT+A V + PH +DG
Sbjct: 22 SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNARPHKVDG 81
Query: 269 RTIDPKPCNPR-TLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
R ++PK R Q+P + + K+F+GG+ + E LR +F +YGK+ + IM+ R
Sbjct: 82 RVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 212 TYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTI 271
T + + YF +YG++ +M + +G+ RGF FVTF D N+V ++ HT++G
Sbjct: 116 TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNC 175
Query: 272 DPKPC 276
+ +
Sbjct: 176 EVRKA 180
Score = 35.0 bits (79), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 282 QKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM-SPRTIRA 330
+ PK+ K+F+GGL T+ LR+ F ++G + + V+M P T R+
Sbjct: 5 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 54
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Query: 209 AYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDG 268
++ T + + +F ++G + DCVVM++ T RSRGFGFVT+A V + PH +DG
Sbjct: 22 SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDG 81
Query: 269 RTIDPKPCNPR-TLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
R ++PK R Q+P + + K+F+GG+ + E LR +F +YGK+ + IM+ R
Sbjct: 82 RVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%)
Query: 212 TYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTI 271
T + + YF +YG++ +M + +G+ RGF FVTF D ++V ++ HT++G
Sbjct: 116 TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNC 175
Query: 272 DPKPC 276
+ +
Sbjct: 176 EVRKA 180
Score = 35.4 bits (80), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 282 QKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM-SPRTIRA 330
+ PK+ K+F+GGL T+ LR+ F ++G + + V+M P T R+
Sbjct: 5 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 54
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 91/172 (52%), Gaps = 19/172 (11%)
Query: 209 AYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDG 268
++ T + + Y+ ++G++ DCVVM++ + RSRGFGFVTF+ V + PH++DG
Sbjct: 29 SFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDG 88
Query: 269 RTIDPKPCNPRTLQ-KPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT 327
R ++PK R KP + + K+F+GG+ + E LR +F YGK+ + I++ R
Sbjct: 89 RVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDR- 147
Query: 328 IRAGITR----------VPTQELPVQKEAT------AVQQVLRRSSTTKVQA 363
++G R P ++ +QK T V++ L R +VQ+
Sbjct: 148 -QSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKALSRQEMQEVQS 198
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 282 QKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
+K ++ F K+F+GGL TE LR ++ ++GK+ + V+M
Sbjct: 12 RKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVM 53
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 15/170 (8%)
Query: 209 AYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDG 268
++ T + + Y+ ++G++ DCVVM++ + RSRGFGFVTF+ V + PH++DG
Sbjct: 17 SFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDG 76
Query: 269 RTIDPKPCNPRTLQ-KPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT 327
R ++PK R KP + + K+F+GG+ + E LR +F YGK+ + I++ R
Sbjct: 77 RVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQ 136
Query: 328 --IRAGITRV------PTQELPVQKEAT------AVQQVLRRSSTTKVQA 363
+ G V P ++ +QK T V++ L R +VQ+
Sbjct: 137 SGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQS 186
Score = 38.9 bits (89), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 284 PKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
++ F K+F+GGL TE LR ++ ++GK+ + V+M
Sbjct: 2 EREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVM 41
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
Query: 220 YFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPR 279
Y SR+GEV+DC + + TGRSRGFGFV F D +V V++ H LDG+ IDPK
Sbjct: 167 YLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKAL 226
Query: 280 TLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVI-MSPRT-IRAGITRVP- 336
++P K KVF+GGL + +E ++ +F +G++ + + M +T R G +
Sbjct: 227 KGKEPPK-----KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY 281
Query: 337 TQELPVQK 344
T E PV+K
Sbjct: 282 TDEEPVKK 289
Score = 35.8 bits (81), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 33/66 (50%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ YF +GE+ + + + +T RGF F+T+ D V ++++ H + + K
Sbjct: 250 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ 309
Query: 278 PRTLQK 283
P+ + +
Sbjct: 310 PKEVYR 315
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 91/172 (52%), Gaps = 19/172 (11%)
Query: 209 AYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDG 268
++ T + + Y+ ++G++ DCVVM++ + RSRGFGFVTF+ V + PH++DG
Sbjct: 29 SFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDG 88
Query: 269 RTIDPKPCNPRTLQ-KPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT 327
R ++PK R KP + + K+F+GG+ + E LR +F YGK+ + I++ R
Sbjct: 89 RVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDR- 147
Query: 328 IRAGITR----------VPTQELPVQKEAT------AVQQVLRRSSTTKVQA 363
++G R P ++ +QK T V++ L R +VQ+
Sbjct: 148 -QSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQS 198
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 282 QKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
+K ++ F K+F+GGL TE LR ++ ++GK+ + V+M
Sbjct: 12 RKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVM 53
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 91/172 (52%), Gaps = 19/172 (11%)
Query: 209 AYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDG 268
++ T + + Y+ ++G++ DCVVM++ + RSRGFGFVTF+ V + PH++DG
Sbjct: 29 SFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDG 88
Query: 269 RTIDPKPCNPRTLQ-KPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT 327
R ++PK R KP + + K+F+GG+ + E LR +F YGK+ + I++ R
Sbjct: 89 RVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDR- 147
Query: 328 IRAGITR----------VPTQELPVQKEAT------AVQQVLRRSSTTKVQA 363
++G R P ++ +QK T V++ L R +VQ+
Sbjct: 148 -QSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQS 198
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 282 QKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
+K ++ F K+F+GGL TE LR ++ ++GK+ + V+M
Sbjct: 12 RKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVM 53
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Query: 209 AYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDG 268
++ T + + Y+ ++G + DCVVM++ + RSRGFGFVTF+ N V + PHT+DG
Sbjct: 17 SFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMATRPHTIDG 76
Query: 269 RTIDPKPCNPRTLQ-KPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
R ++PK R KP + + K+F+GG+ + E LR +F YGK+ + I++ +
Sbjct: 77 RVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDK 135
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 212 TYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTI 271
T + + YF YG++ ++ + ++G+ RGF FVTF D + V ++ HT++G
Sbjct: 111 TEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNA 170
Query: 272 DPKPC 276
+ +
Sbjct: 171 EVRKA 175
Score = 35.8 bits (81), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 284 PKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
++ F K+F+GGL TE LR ++ ++G + + V+M
Sbjct: 2 EREKEQFRKLFIGGLSFETTEESLRNYYEQWGTLTDCVVM 41
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 88/182 (48%), Gaps = 16/182 (8%)
Query: 182 AGGATGAAPTGPNPSG--PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETG 239
+G GA N S AGK ++ T + + YF+++GEV+DC + + TG
Sbjct: 54 SGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG 113
Query: 240 RSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPRTLQKPKKNSSFPKVFLGGLP 299
RSRGFGF+ F D ++V V+ H LDGR IDPK K K+F+GGL
Sbjct: 114 RSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAM------KKDPVKKIFVGGLN 167
Query: 300 SNVTETDLRTFFNRYGKV--MEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRRSS 357
TE +R +F ++G++ +E+ I R G + KE V++VL +
Sbjct: 168 PEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITF------KEEDPVKKVLEKKF 221
Query: 358 TT 359
T
Sbjct: 222 HT 223
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ YF ++GE+ + + + + RGF F+TF + + V V++ HT+ G + K
Sbjct: 176 REYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQ 235
Query: 278 PRTL 281
P+ +
Sbjct: 236 PKEV 239
>sp|Q02926|RB97D_DROME Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=2
SV=1
Length = 471
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 81/146 (55%), Gaps = 3/146 (2%)
Query: 220 YFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPR 279
++ ++G+V+D VVM++ T RSRGFGF+T+ V +N PH +DG+T++ K PR
Sbjct: 51 FYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHIIDGKTVEAKRALPR 110
Query: 280 TLQKPKK-NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTI--RAGITRVP 336
++ ++ N S K+F+GGL N E LR +F ++G V+ V +++ +T R G V
Sbjct: 111 PERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVE 170
Query: 337 TQELPVQKEATAVQQVLRRSSTTKVQ 362
+ +A +Q + V+
Sbjct: 171 FDDYDAVDKAILKKQHAIKYVHVDVK 196
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ YF ++G V+ ++ + TG+ RGF FV F D + V I H + +D K
Sbjct: 140 REYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSI 199
Query: 278 PRTLQKPKK 286
+K K+
Sbjct: 200 YNLDKKEKQ 208
Score = 39.7 bits (91), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
K+F+GGL TE +L+ F+ ++GKV++VV+M
Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVM 64
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 91/172 (52%), Gaps = 19/172 (11%)
Query: 209 AYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDG 268
++ T + + Y+ ++G++ DCVVM++ + RSRGFGFVTF+ V + PH++DG
Sbjct: 29 SFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDG 88
Query: 269 RTIDPKPCNPRTLQ-KPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT 327
R ++PK R KP + + K+F+GG+ + E LR +F YGK+ + I++ R
Sbjct: 89 RVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDR- 147
Query: 328 IRAGITR----------VPTQELPVQKEAT------AVQQVLRRSSTTKVQA 363
++G R P ++ +QK T V++ L R +VQ+
Sbjct: 148 -QSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRKALSRQEMQEVQS 198
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 282 QKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
+K ++ F K+F+GGL TE LR ++ ++GK+ + V+M
Sbjct: 12 RKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVM 53
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Query: 209 AYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDG 268
++ T + + +F ++G + DCVVM++ + RSRGFGFVT+ + V + PH +DG
Sbjct: 22 SFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTARPHKVDG 81
Query: 269 RTIDPKPCNPR-TLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
R ++PK R +P + + K+F+GG+ + E LR +F +YGK+ + IM+ R
Sbjct: 82 RVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDR 140
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 212 TYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLD 267
T + + YF +YG++ +M + +G+ RGF FVTF D ++V ++ HT++
Sbjct: 116 TEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVN 171
Score = 32.3 bits (72), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 290 FPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
K+F+GGL T+ LR F ++G + + V+M
Sbjct: 13 LRKLFIGGLSFETTDESLREHFEQWGTLTDCVVM 46
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 74/129 (57%), Gaps = 8/129 (6%)
Query: 219 RYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNP 278
Y SR+GEV+DC + + TGRSRGFGFV F D +V V++ H LDG+ IDPK
Sbjct: 48 EYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRAKA 107
Query: 279 RTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVI-MSPRT-IRAGITRVP 336
++P K KVF+GGL + +E ++ +F +G++ + + M +T R G +
Sbjct: 108 LKGKEPPK-----KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFIT 162
Query: 337 -TQELPVQK 344
T E PV+K
Sbjct: 163 YTDEEPVKK 171
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 33/66 (50%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ YF +GE+ + + + +T RGF F+T+ D V ++++ H + + K
Sbjct: 132 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ 191
Query: 278 PRTLQK 283
P+ + +
Sbjct: 192 PKEVYR 197
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 85/159 (53%), Gaps = 15/159 (9%)
Query: 220 YFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPR 279
Y+ ++G++ DCVVM++ + RSRGFGFVTF+ V + PH++DGR ++PK R
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAR 87
Query: 280 TLQ-KPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRV- 335
KP + + K+F+GG+ + E LR +F YGK+ + I++ R + G V
Sbjct: 88 EESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVT 147
Query: 336 -----PTQELPVQKEAT------AVQQVLRRSSTTKVQA 363
P ++ +QK T V++ L R +VQ+
Sbjct: 148 FDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQS 186
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%)
Query: 212 TYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTI 271
T + + YF+ YG++ ++ + ++G+ RGFGFVTF D + V ++ HT++G
Sbjct: 111 TEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNA 170
Query: 272 DPKPCNPR 279
+ + R
Sbjct: 171 EVRKALSR 178
Score = 38.9 bits (89), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 284 PKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
++ F K+F+GGL TE LR ++ ++GK+ + V+M
Sbjct: 2 EREKEQFRKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVM 41
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 92/186 (49%), Gaps = 18/186 (9%)
Query: 172 PTTPAAGGPPAGGATGA----------APTGPNPSGPSAGKPPADYSAYGTYAQYQQRYF 221
P +PA P+G A A P P+ S K ++ T + Y
Sbjct: 12 PQSPARALRPSGAARAAPSLSPSRFSACPLDPSSFPTSGNKMFIGGLSWDTSKKDLTEYL 71
Query: 222 SRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPRTL 281
SR+GEV+DC + + TGRSRGFGFV F D +V V++ H LDG+ IDPK
Sbjct: 72 SRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKG 131
Query: 282 QKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVI-MSPRT-IRAGITRVP-TQ 338
++P K KVF+GGL + +E ++ +F +G++ + + M +T R G + T
Sbjct: 132 KEPPK-----KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTD 186
Query: 339 ELPVQK 344
E PV+K
Sbjct: 187 EEPVKK 192
Score = 35.4 bits (80), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 33/66 (50%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ YF +GE+ + + + +T RGF F+T+ D V ++++ H + + K
Sbjct: 153 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ 212
Query: 278 PRTLQK 283
P+ + +
Sbjct: 213 PKEVYR 218
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 73/129 (56%), Gaps = 8/129 (6%)
Query: 219 RYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNP 278
Y SR+GEV+DC + + TGRSRGFGFV F D +V V++ H LDG+ IDPK
Sbjct: 44 EYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETKEHKLDGKLIDPKRAKA 103
Query: 279 RTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVI-MSPRT-IRAGITRVP 336
++P K KVF+GGL TE ++ +F +G++ + + M +T R G V
Sbjct: 104 LKGKEPPK-----KVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVT 158
Query: 337 -TQELPVQK 344
T E PV+K
Sbjct: 159 YTGEEPVKK 167
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ +F ++G + DCVVM++ +T RSRGFGFVT++ V + PH +DGR ++PK
Sbjct: 52 REHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAV 111
Query: 278 PRTLQ-KPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
R KP + + K+F+GG+ + E +LR +F +YGK+ + +M R
Sbjct: 112 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDR 161
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 215 QYQQR-YFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDP 273
+Y R YF +YG++ VM++ ++G+ RGF FVTF D + V ++ HT++G +
Sbjct: 139 EYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 198
Query: 274 K 274
K
Sbjct: 199 K 199
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 282 QKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM-SPRTIRA 330
PK+ K+F+GGL T+ LR F ++G + + V+M P+T R+
Sbjct: 26 HDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRS 75
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ +F ++G + DCVVM++ +T RSRGFGFVT++ V + PH +DGR ++PK
Sbjct: 52 REHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAV 111
Query: 278 PRTLQ-KPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
R KP + + K+F+GG+ + E +LR +F +YGK+ + +M R
Sbjct: 112 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDR 161
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 215 QYQQR-YFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDP 273
+Y R YF +YG++ VM++ ++G+ RGF FVTF D + V ++ HT++G +
Sbjct: 139 EYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 198
Query: 274 K 274
K
Sbjct: 199 K 199
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 282 QKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM-SPRTIRA 330
PK+ K+F+GGL T+ LR F ++G + + V+M P+T R+
Sbjct: 26 HDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRS 75
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ +F ++G + DCVVM++ +T RSRGFGFVT++ V + PH +DGR ++PK
Sbjct: 52 REHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAV 111
Query: 278 PRTLQ-KPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
R KP + + K+F+GG+ + E +LR +F +YGK+ + +M R
Sbjct: 112 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDR 161
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 215 QYQQR-YFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDP 273
+Y R YF +YG++ VM++ ++G+ RGF FVTF D + V ++ HT++G +
Sbjct: 139 EYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 198
Query: 274 K 274
K
Sbjct: 199 K 199
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 282 QKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM-SPRTIRA 330
PK+ K+F+GGL T+ LR F ++G + + V+M P+T R+
Sbjct: 26 HDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRS 75
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 73/129 (56%), Gaps = 8/129 (6%)
Query: 219 RYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNP 278
Y SR+GEV+DC + + TGRSRGFGFV F D +V V++ H LDG+ IDPK
Sbjct: 44 EYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETNEHKLDGKLIDPKRAKA 103
Query: 279 RTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKV--MEVVIMSPRTIRAGITRVP 336
++P K KVF+GGL TE ++ +F +G++ +E+ I + R G V
Sbjct: 104 LKGKEPPK-----KVFVGGLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVT 158
Query: 337 -TQELPVQK 344
T E PV+K
Sbjct: 159 YTGEEPVKK 167
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 74/129 (57%), Gaps = 8/129 (6%)
Query: 219 RYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNP 278
Y SR+GEV+DC + + TGRSRGFGFV F D +V V++ H LDG+ IDPK
Sbjct: 47 EYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKA 106
Query: 279 RTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVI-MSPRT-IRAGITRVP 336
++P K KVF+GGL + +E ++ +F +G++ + + M +T R G +
Sbjct: 107 LKGKEPPK-----KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFIT 161
Query: 337 -TQELPVQK 344
T E PV+K
Sbjct: 162 YTDEEPVKK 170
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 33/66 (50%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ YF +GE+ + + + +T RGF F+T+ D V ++++ H + + K
Sbjct: 131 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ 190
Query: 278 PRTLQK 283
P+ + +
Sbjct: 191 PKEVYR 196
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Query: 209 AYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDG 268
++ T + + ++ ++G++ DCVVM++ + RSRGFGFVTF+ N V + PHT+DG
Sbjct: 17 SFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSARPHTIDG 76
Query: 269 RTIDPKPCNPRTLQ-KPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
R ++PK R KP + + K+F+GG+ + E LR +F YGK+ I++ +
Sbjct: 77 RVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDK 135
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%)
Query: 212 TYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTI 271
T + + YF YG++ ++ + ++G+ RGFGFVTF D + V ++ HT++G
Sbjct: 111 TEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNA 170
Query: 272 DPKPC 276
+ +
Sbjct: 171 EVRKA 175
Score = 38.5 bits (88), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 284 PKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
++ F K+F+GGL TE LR F+ ++G++ + V+M
Sbjct: 2 EREKEQFRKLFIGGLSFETTEESLRNFYEQWGQLTDCVVM 41
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 73/128 (57%), Gaps = 8/128 (6%)
Query: 220 YFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPR 279
Y SR+GEV+DC + + TGRSRGFGFV F D +V V++ H LDG+ IDPK
Sbjct: 53 YLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETKEHKLDGKLIDPKRAKAL 112
Query: 280 TLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVI-MSPRT-IRAGITRVP- 336
++P K KVF+GGL TE ++ +F +G++ + + M +T R G V
Sbjct: 113 QGKEPPK-----KVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTY 167
Query: 337 TQELPVQK 344
T E PVQK
Sbjct: 168 TDEEPVQK 175
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
++YF +GE+ + + + +T RGF FVT+ D V ++++ H + + K
Sbjct: 136 KQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLESRFHQIGTGKCEIKAAQ 195
Query: 278 PRTL 281
P+ +
Sbjct: 196 PKEV 199
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ +F ++G++ DCVVM++ +T RSRGFGFVT++ V + PH +DGR ++PK
Sbjct: 44 REHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVDGRVVEPKRAV 103
Query: 278 PRTLQ-KPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
R +P + + K+F+GG+ + E LR +F YGK+ + +M R
Sbjct: 104 SREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDR 153
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 215 QYQQR-YFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDP 273
+Y R YF YG++ VM++ ++G+ RGF FVTF D + V ++ HT++ +
Sbjct: 131 EYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINLHNCEV 190
Query: 274 KP 275
K
Sbjct: 191 KK 192
Score = 38.9 bits (89), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 282 QKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM-SPRTIRA 330
+PK+ K+F+GGL T+ LR F ++GK+ + V+M P+T R+
Sbjct: 18 HEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRS 67
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 73/128 (57%), Gaps = 8/128 (6%)
Query: 220 YFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPR 279
YFS++GEV+DC + + TGRSRGFGFV F + +V V+ H L+G+ IDPK
Sbjct: 116 YFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAM 175
Query: 280 TLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVI-MSPRT-IRAGITRVP- 336
++P K K+F+GGL + E +R +F +G+V + + M +T R G +
Sbjct: 176 KTKEPVK-----KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
Query: 337 TQELPVQK 344
+E PV+K
Sbjct: 231 KEEEPVKK 238
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVI-MSPRTIRA-GITRVPTQE------LPVQ 343
K+F+GGL + T+ DL+ +F+++G+V++ + + P T R+ G V +E + Q
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 344 KEATAVQQVL--RRSSTTKVQAPFGATTLSPPNLTTPTGECRTF 385
KE +V+ +R+ K + P + + TP + R +
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 201
Score = 35.4 bits (80), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTL 266
+ YF +GEV + +N+T + RGF F+TF + V +++ H +
Sbjct: 199 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 247
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 73/128 (57%), Gaps = 8/128 (6%)
Query: 220 YFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPR 279
YFS++GEV+DC + + TGRSRGFGFV F + +V V+ H L+G+ IDPK
Sbjct: 116 YFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAM 175
Query: 280 TLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVI-MSPRT-IRAGITRVP- 336
++P K K+F+GGL + E +R +F +G+V + + M +T R G +
Sbjct: 176 KTKEPVK-----KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
Query: 337 TQELPVQK 344
+E PV+K
Sbjct: 231 KEEEPVKK 238
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVI-MSPRTIRA-GITRVPTQE------LPVQ 343
K+F+GGL + T+ DL+ +F+++G+V++ + + P T R+ G V +E + Q
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 344 KEATAVQQVL--RRSSTTKVQAPFGATTLSPPNLTTPTGECRTF 385
KE +V+ +R+ K + P + + TP + R +
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 201
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTL 266
+ YF +GEV + +N+T + RGF F+TF + V +++ H +
Sbjct: 199 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 247
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ +F ++G++ DCVVM++ +T RSRGFGFVT++ V + PH +DGR ++PK
Sbjct: 44 REHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVDGRVVEPKRAV 103
Query: 278 PRTLQ-KPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
R +P + + K+F+GG+ + E LR + YGK+ + +M R
Sbjct: 104 SREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDR 153
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 215 QYQQRYFSR-YGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDP 273
+Y R +S YG++ VM++ ++G+ RGF FVTF D + V ++ HT++G +
Sbjct: 131 EYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 190
Query: 274 KPC 276
K
Sbjct: 191 KKA 193
Score = 38.9 bits (89), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 282 QKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM-SPRTIRA 330
PK+ K+F+GGL T+ LR F ++GK+ + V+M P+T R+
Sbjct: 18 HDPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRS 67
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila
melanogaster GN=Hrb87F PE=2 SV=2
Length = 385
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 220 YFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPR 279
+F ++G ++D VVMK+ +T RSRGFGF+T++ + PH +DGRT++PK PR
Sbjct: 43 HFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPR 102
Query: 280 -TLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
+ P ++ K+F+GGL + E LR +F +G+++ V I+S +
Sbjct: 103 QEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDK 150
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPC 276
+ YF +G+++ ++ + +TG+ RGF F+ F D + V +I H++ +T+D K
Sbjct: 132 REYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKA 190
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM-SPRTIRA 330
K+F+GGL T+ L+ F ++G +++VV+M P+T R+
Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRS 64
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 8/128 (6%)
Query: 220 YFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPR 279
YFS++G+V+DC + + TGRSRGFGFV F + +V V+ H L+G+ IDPK
Sbjct: 114 YFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAM 173
Query: 280 TLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVI-MSPRT-IRAGITRVP- 336
++P K K+F+GGL + E +R +F +G+V + + M +T R G +
Sbjct: 174 KTKEPVK-----KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 228
Query: 337 TQELPVQK 344
+E PV+K
Sbjct: 229 KEEEPVKK 236
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVI-MSPRTIRA-GITRVPTQE------LPVQ 343
K+F+GGL + T+ DL+ +F+++G V++ + + P T R+ G V +E + Q
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 344 KEATAVQQVL--RRSSTTKVQAPFGATTLSPPNLTTPTGECRTF 385
KE +V+ +R+ K + P + + TP + R +
Sbjct: 156 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 199
Score = 35.4 bits (80), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTL 266
+ YF +GEV + +N+T + RGF F+TF + V +++ H +
Sbjct: 197 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 245
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ YF +YG V D +MK+ TGRSRGFGF++F P++V V++ H LDG+ IDPK
Sbjct: 176 REYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAI 234
Query: 278 PRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
PR Q K+F+GG+ +V + FF+++G +++ +M +
Sbjct: 235 PRDEQ-----DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK 278
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ +FS++G +ID +M + +TG+SRGFGFVT+ + V V QN R I+ K
Sbjct: 260 EEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAE 319
Query: 278 PRTLQK 283
PR +Q+
Sbjct: 320 PRHMQQ 325
Score = 38.9 bits (89), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM-SPRTIRA-GITRVPTQELPVQKEATAV 349
K+F+GGL + TE +LR +F +YG V ++ IM P T R+ G + ++ E
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 350 QQVL 353
Q +L
Sbjct: 220 QHIL 223
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Query: 212 TYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTI 271
T + ++S++GE+ D +VM++ T RSRGFGFVTF+ V ++ PH +DG+T+
Sbjct: 34 TTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTV 93
Query: 272 DPKPCNPRTLQ-KPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
DPK PR + + + N S ++++ G+ + TE L +F +YG V + I+
Sbjct: 94 DPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEII 146
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 220 YFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKP 275
YF++YG V ++ + T + RGFGFVTF D ++V + H ++G D +
Sbjct: 133 YFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRK 188
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 27/35 (77%)
Query: 289 SFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
+ K+F+GGL SN T+ +R F++++G++ ++++M
Sbjct: 21 NLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVM 55
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 70/118 (59%), Gaps = 1/118 (0%)
Query: 210 YGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGR 269
Y T + + +F ++G ++D VVMK+ T RSRGFGF+T++ + + ++ PH +DGR
Sbjct: 40 YRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGR 99
Query: 270 TIDPKPCNPR-TLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
++PK PR + P ++ K+F+G L + E +R +F +G ++++ I+ +
Sbjct: 100 VVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDK 157
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 220 YFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPR 279
YF +G ++D ++ + ETG+ RGF FV F D + V V+ H L+G+ +D K P+
Sbjct: 141 YFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPK 200
Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM-SPRTIRA 330
K+F+GGL T+ +L+ F ++G +++VV+M PRT R+
Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRS 71
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.132 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,251,972
Number of Sequences: 539616
Number of extensions: 9665395
Number of successful extensions: 47401
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 1832
Number of HSP's that attempted gapping in prelim test: 27868
Number of HSP's gapped (non-prelim): 10745
length of query: 388
length of database: 191,569,459
effective HSP length: 119
effective length of query: 269
effective length of database: 127,355,155
effective search space: 34258536695
effective search space used: 34258536695
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)