Query psy10362
Match_columns 388
No_of_seqs 281 out of 2076
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 15:57:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 3.3E-30 7.2E-35 254.5 21.2 146 196-346 103-251 (346)
2 TIGR01645 half-pint poly-U bin 99.9 1.1E-26 2.4E-31 241.6 16.9 146 198-343 105-259 (612)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.7E-26 5.9E-31 227.2 14.3 149 199-355 2-153 (352)
4 KOG0144|consensus 99.9 1.7E-26 3.7E-31 224.2 11.5 158 195-359 29-191 (510)
5 KOG0148|consensus 99.9 2.2E-25 4.8E-30 205.4 12.8 151 202-362 64-226 (321)
6 TIGR01628 PABP-1234 polyadenyl 99.9 3.5E-25 7.6E-30 232.9 14.7 142 202-346 2-145 (562)
7 TIGR01622 SF-CC1 splicing fact 99.9 1.5E-24 3.2E-29 222.4 16.4 148 198-345 87-243 (457)
8 KOG0117|consensus 99.9 2.7E-24 5.8E-29 209.8 13.7 165 198-374 81-331 (506)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 7.1E-24 1.5E-28 209.9 15.1 146 199-344 88-325 (352)
10 KOG0145|consensus 99.9 3.6E-24 7.8E-29 196.4 11.7 153 197-357 38-193 (360)
11 TIGR01648 hnRNP-R-Q heterogene 99.9 3.4E-23 7.3E-28 215.2 15.9 140 199-345 57-284 (578)
12 TIGR01628 PABP-1234 polyadenyl 99.9 5.5E-23 1.2E-27 216.3 15.6 144 200-344 88-233 (562)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.8E-22 6.1E-27 207.2 14.5 147 200-357 2-158 (481)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 9.1E-22 2E-26 203.4 16.6 139 198-341 273-447 (481)
15 KOG4205|consensus 99.9 1.9E-22 4.1E-27 194.8 9.4 148 199-346 5-155 (311)
16 KOG0131|consensus 99.9 1.8E-22 3.9E-27 176.7 7.9 167 197-367 6-177 (203)
17 KOG0124|consensus 99.9 9.3E-22 2E-26 187.7 10.5 172 200-374 113-293 (544)
18 KOG0109|consensus 99.9 5.8E-22 1.2E-26 184.5 8.4 146 201-373 3-156 (346)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.9 9.2E-21 2E-25 196.8 16.4 145 196-346 171-353 (509)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.8 1.9E-20 4.1E-25 194.5 14.9 158 198-361 293-489 (509)
21 KOG0127|consensus 99.8 2.7E-20 5.9E-25 185.5 12.4 150 200-356 117-354 (678)
22 KOG0127|consensus 99.8 3.5E-20 7.6E-25 184.7 12.8 163 201-369 6-191 (678)
23 KOG0145|consensus 99.8 2.1E-19 4.5E-24 165.2 10.2 156 198-356 125-343 (360)
24 KOG0148|consensus 99.8 2.6E-19 5.7E-24 165.4 9.5 108 197-338 3-112 (321)
25 KOG0123|consensus 99.8 6.7E-19 1.4E-23 175.3 12.8 128 202-346 3-131 (369)
26 TIGR01622 SF-CC1 splicing fact 99.8 1.2E-18 2.6E-23 178.7 14.8 139 200-340 186-420 (457)
27 KOG0105|consensus 99.8 6.2E-18 1.3E-22 148.6 11.6 135 198-340 4-160 (241)
28 KOG0146|consensus 99.7 9.4E-18 2E-22 154.8 11.9 169 199-368 18-366 (371)
29 KOG0144|consensus 99.7 4.1E-18 8.9E-23 166.1 8.3 82 198-280 122-207 (510)
30 KOG0123|consensus 99.7 7.9E-17 1.7E-21 160.5 11.7 138 199-339 75-217 (369)
31 PLN03134 glycine-rich RNA-bind 99.7 4.9E-17 1.1E-21 141.9 7.5 83 198-280 32-115 (144)
32 KOG0110|consensus 99.7 2.2E-16 4.9E-21 162.1 11.1 153 201-356 516-678 (725)
33 KOG0147|consensus 99.7 5.1E-17 1.1E-21 162.9 6.1 152 196-347 175-337 (549)
34 KOG4212|consensus 99.7 8.4E-16 1.8E-20 150.1 12.7 149 200-349 44-275 (608)
35 KOG0149|consensus 99.7 1E-16 2.2E-21 146.1 5.8 82 197-278 9-90 (247)
36 KOG4211|consensus 99.6 2.5E-15 5.4E-20 149.1 13.0 147 198-347 8-162 (510)
37 KOG4206|consensus 99.6 8.6E-15 1.9E-19 133.1 14.0 146 201-355 10-205 (221)
38 TIGR01645 half-pint poly-U bin 99.6 2.6E-14 5.5E-19 149.5 15.0 79 199-277 203-282 (612)
39 KOG0125|consensus 99.6 1.8E-14 3.8E-19 136.7 12.4 96 193-290 89-185 (376)
40 COG0724 RNA-binding proteins ( 99.6 3.1E-14 6.7E-19 132.6 13.0 127 200-326 115-261 (306)
41 KOG1457|consensus 99.5 2.2E-13 4.9E-18 123.2 12.8 153 198-358 32-270 (284)
42 PF00076 RRM_1: RNA recognitio 99.5 2.8E-14 6E-19 107.5 5.6 69 203-272 1-70 (70)
43 KOG0122|consensus 99.5 4.7E-14 1E-18 129.2 6.1 82 198-279 187-269 (270)
44 TIGR01659 sex-lethal sex-letha 99.5 8.7E-14 1.9E-18 137.9 8.3 81 199-279 192-275 (346)
45 TIGR01648 hnRNP-R-Q heterogene 99.5 6.8E-14 1.5E-18 146.0 6.8 113 199-319 232-370 (578)
46 KOG0121|consensus 99.4 8.8E-14 1.9E-18 115.8 5.0 79 198-276 34-113 (153)
47 PLN03120 nucleic acid binding 99.4 2.7E-13 5.9E-18 127.4 8.7 77 200-279 4-80 (260)
48 KOG0129|consensus 99.4 1.3E-12 2.7E-17 130.9 13.3 180 199-383 258-462 (520)
49 PF14259 RRM_6: RNA recognitio 99.4 2E-13 4.3E-18 103.7 5.6 69 203-272 1-70 (70)
50 KOG0147|consensus 99.4 4.1E-13 8.8E-18 135.1 9.1 76 201-276 279-355 (549)
51 KOG0113|consensus 99.4 2.6E-13 5.6E-18 127.5 7.0 84 195-278 96-180 (335)
52 KOG0107|consensus 99.4 3.4E-13 7.3E-18 118.1 4.9 78 199-281 9-87 (195)
53 KOG0106|consensus 99.4 3.9E-13 8.4E-18 123.2 5.5 140 201-360 2-157 (216)
54 KOG4207|consensus 99.4 4.7E-13 1E-17 119.9 5.2 83 197-279 10-93 (256)
55 KOG0126|consensus 99.4 2.2E-14 4.7E-19 126.1 -3.3 83 198-280 33-116 (219)
56 KOG1190|consensus 99.3 9.7E-12 2.1E-16 121.2 12.5 139 200-345 297-467 (492)
57 smart00362 RRM_2 RNA recogniti 99.3 4.6E-12 1E-16 94.3 6.7 71 202-274 1-72 (72)
58 smart00360 RRM RNA recognition 99.3 8.3E-12 1.8E-16 92.5 7.7 69 205-273 1-70 (71)
59 PLN03121 nucleic acid binding 99.3 3.5E-12 7.7E-17 118.1 6.2 76 199-277 4-79 (243)
60 KOG0111|consensus 99.3 9.3E-13 2E-17 119.0 2.0 85 198-282 8-93 (298)
61 PLN03213 repressor of silencin 99.3 5.4E-12 1.2E-16 125.3 5.9 77 199-279 9-88 (759)
62 KOG4454|consensus 99.3 2.8E-12 6.1E-17 115.9 3.5 126 196-337 5-132 (267)
63 KOG1548|consensus 99.3 5.1E-11 1.1E-15 114.1 12.0 149 201-358 135-336 (382)
64 KOG0124|consensus 99.2 6.2E-11 1.3E-15 114.1 12.4 77 200-276 210-287 (544)
65 KOG0108|consensus 99.2 8.3E-12 1.8E-16 126.1 6.6 80 201-280 19-99 (435)
66 PLN03134 glycine-rich RNA-bind 99.2 5.1E-11 1.1E-15 104.0 10.1 59 288-346 32-92 (144)
67 KOG0130|consensus 99.2 9.4E-12 2E-16 104.7 3.8 81 201-281 73-154 (170)
68 cd00590 RRM RRM (RNA recogniti 99.2 5.9E-11 1.3E-15 88.7 6.9 72 202-274 1-73 (74)
69 KOG0110|consensus 99.2 1.5E-10 3.2E-15 119.8 11.0 144 200-349 385-579 (725)
70 KOG0149|consensus 99.1 4.9E-11 1.1E-15 109.1 5.2 69 287-355 9-80 (247)
71 KOG0146|consensus 99.1 5.8E-11 1.3E-15 110.2 5.4 86 195-280 280-366 (371)
72 KOG4205|consensus 99.1 5.8E-11 1.3E-15 115.2 3.4 119 200-318 97-215 (311)
73 smart00361 RRM_1 RNA recogniti 99.1 3.4E-10 7.5E-15 86.4 6.2 60 214-273 2-69 (70)
74 KOG1190|consensus 99.0 1.6E-10 3.5E-15 112.8 5.1 146 198-351 26-209 (492)
75 KOG0114|consensus 99.0 3.5E-10 7.6E-15 91.2 6.0 78 198-278 16-94 (124)
76 KOG0120|consensus 99.0 9.8E-10 2.1E-14 111.9 10.7 155 198-355 287-476 (500)
77 PF00076 RRM_1: RNA recognitio 99.0 7.5E-10 1.6E-14 83.1 6.4 48 293-340 1-49 (70)
78 KOG0117|consensus 99.0 2.6E-10 5.7E-15 112.5 4.3 77 199-283 258-335 (506)
79 KOG1456|consensus 99.0 6.4E-09 1.4E-13 100.7 13.4 155 199-365 30-197 (494)
80 KOG4212|consensus 99.0 5.6E-09 1.2E-13 102.8 12.9 64 197-261 212-275 (608)
81 PLN03120 nucleic acid binding 99.0 1.2E-09 2.6E-14 102.9 7.5 74 290-364 4-77 (260)
82 KOG0125|consensus 98.9 2.4E-09 5.1E-14 102.2 8.7 61 286-346 92-152 (376)
83 KOG1365|consensus 98.9 8.9E-10 1.9E-14 106.8 5.6 142 201-343 162-337 (508)
84 KOG0415|consensus 98.9 5.2E-10 1.1E-14 107.5 3.6 82 197-278 236-318 (479)
85 KOG0132|consensus 98.9 8.5E-10 1.8E-14 115.0 5.0 107 200-312 421-528 (894)
86 KOG1456|consensus 98.9 9.9E-08 2.1E-12 92.6 18.1 154 198-362 285-473 (494)
87 KOG0113|consensus 98.9 2.2E-09 4.8E-14 101.3 6.2 67 288-360 99-167 (335)
88 KOG0107|consensus 98.9 4.5E-09 9.8E-14 92.4 6.3 73 290-368 10-86 (195)
89 PF14259 RRM_6: RNA recognitio 98.8 1.2E-08 2.6E-13 77.2 7.5 53 293-345 1-54 (70)
90 PF13893 RRM_5: RNA recognitio 98.8 2.4E-09 5.1E-14 77.8 3.4 54 217-275 1-55 (56)
91 KOG0131|consensus 98.8 2.1E-09 4.5E-14 95.0 3.5 81 200-280 96-178 (203)
92 KOG4208|consensus 98.8 4.9E-09 1.1E-13 94.4 5.9 82 198-279 47-130 (214)
93 KOG0109|consensus 98.8 5.1E-09 1.1E-13 98.5 5.8 77 198-282 76-153 (346)
94 KOG4211|consensus 98.8 8.4E-09 1.8E-13 103.2 7.3 149 200-356 103-341 (510)
95 PLN03121 nucleic acid binding 98.8 8.3E-09 1.8E-13 95.9 6.8 73 290-363 5-77 (243)
96 KOG0128|consensus 98.8 7.1E-10 1.5E-14 116.8 -0.6 143 200-363 667-811 (881)
97 KOG0121|consensus 98.8 8.1E-09 1.8E-13 86.4 5.5 67 288-357 34-102 (153)
98 KOG0226|consensus 98.8 2.7E-08 5.9E-13 92.1 9.5 148 198-346 94-248 (290)
99 KOG0120|consensus 98.8 3.2E-08 7E-13 101.0 10.5 152 198-355 173-356 (500)
100 KOG0153|consensus 98.8 7.8E-09 1.7E-13 99.4 4.9 81 192-278 220-302 (377)
101 smart00362 RRM_2 RNA recogniti 98.8 3.3E-08 7.2E-13 73.2 7.4 50 292-341 1-50 (72)
102 KOG0122|consensus 98.7 1.8E-08 4E-13 92.8 6.6 68 289-362 188-257 (270)
103 PLN03213 repressor of silencin 98.7 2.2E-08 4.7E-13 100.0 6.5 50 289-340 9-58 (759)
104 KOG0226|consensus 98.7 2E-08 4.4E-13 93.0 4.8 84 197-280 187-271 (290)
105 KOG4661|consensus 98.7 3.1E-08 6.7E-13 100.3 6.3 81 200-280 405-486 (940)
106 KOG4210|consensus 98.6 5.4E-08 1.2E-12 94.1 7.4 150 199-354 87-245 (285)
107 KOG0126|consensus 98.6 3.5E-09 7.7E-14 93.5 -2.8 95 265-361 12-109 (219)
108 KOG4207|consensus 98.6 9.1E-08 2E-12 86.3 5.9 78 288-365 11-91 (256)
109 KOG1365|consensus 98.6 4E-07 8.7E-12 88.7 10.5 146 201-346 61-222 (508)
110 COG0724 RNA-binding proteins ( 98.5 3.8E-07 8.2E-12 84.7 9.3 74 290-363 115-191 (306)
111 KOG0116|consensus 98.5 7.3E-08 1.6E-12 97.2 4.6 80 200-279 288-367 (419)
112 KOG1995|consensus 98.5 7.8E-07 1.7E-11 86.3 11.3 84 197-280 63-155 (351)
113 KOG0533|consensus 98.5 1.6E-07 3.4E-12 88.2 6.3 81 198-279 81-162 (243)
114 smart00360 RRM RNA recognition 98.5 3.1E-07 6.7E-12 67.5 6.5 46 295-340 1-48 (71)
115 cd00590 RRM RRM (RNA recogniti 98.5 4.6E-07 1E-11 67.3 7.2 49 292-340 1-50 (74)
116 KOG0111|consensus 98.5 5.9E-08 1.3E-12 88.1 1.9 73 290-368 10-84 (298)
117 KOG0112|consensus 98.4 2.7E-07 5.8E-12 98.1 6.2 145 198-354 370-516 (975)
118 KOG4660|consensus 98.4 1.4E-07 3.1E-12 95.8 3.8 139 195-343 70-226 (549)
119 KOG4676|consensus 98.4 6.6E-08 1.4E-12 94.3 0.3 146 201-348 8-207 (479)
120 KOG0114|consensus 98.4 1.6E-06 3.4E-11 70.3 7.8 57 289-346 17-73 (124)
121 KOG0105|consensus 98.3 6.6E-07 1.4E-11 79.5 5.5 57 289-346 5-61 (241)
122 KOG4209|consensus 98.3 3.5E-07 7.5E-12 85.8 3.7 83 197-279 98-180 (231)
123 KOG4307|consensus 98.2 1.1E-06 2.5E-11 91.0 5.1 142 197-339 308-485 (944)
124 KOG0130|consensus 98.2 3.2E-06 7E-11 71.6 6.4 54 284-337 66-121 (170)
125 KOG0151|consensus 98.1 4.5E-06 9.7E-11 87.0 6.8 86 195-280 169-258 (877)
126 KOG0108|consensus 98.1 4.9E-06 1.1E-10 84.6 6.2 56 291-346 19-76 (435)
127 KOG0153|consensus 98.1 9.6E-06 2.1E-10 78.5 7.1 53 286-342 224-276 (377)
128 KOG0132|consensus 98.0 7.3E-06 1.6E-10 86.2 6.7 63 290-362 421-483 (894)
129 PF04059 RRM_2: RNA recognitio 98.0 1.5E-05 3.2E-10 64.7 6.0 61 201-261 2-64 (97)
130 KOG4206|consensus 98.0 2.4E-05 5.3E-10 71.8 7.7 74 290-367 9-90 (221)
131 KOG0116|consensus 97.9 8.4E-06 1.8E-10 82.4 4.5 76 291-366 289-366 (419)
132 KOG4660|consensus 97.9 3.9E-05 8.5E-10 78.4 9.0 66 286-357 71-136 (549)
133 KOG0415|consensus 97.9 1.2E-05 2.6E-10 77.9 4.4 69 287-355 236-307 (479)
134 KOG4307|consensus 97.9 0.00034 7.5E-09 73.1 15.0 74 200-273 867-941 (944)
135 smart00361 RRM_1 RNA recogniti 97.8 2.5E-05 5.4E-10 59.4 4.8 37 304-340 2-47 (70)
136 KOG4454|consensus 97.7 1.9E-05 4.1E-10 72.1 2.6 66 288-354 7-73 (267)
137 KOG4209|consensus 97.7 4.6E-05 1E-09 71.6 4.8 82 286-367 97-180 (231)
138 KOG4208|consensus 97.7 0.00014 3E-09 66.0 7.5 72 288-359 47-122 (214)
139 KOG2193|consensus 97.6 1.1E-05 2.5E-10 79.6 0.0 109 201-323 2-113 (584)
140 COG5175 MOT2 Transcriptional r 97.6 7.3E-05 1.6E-09 72.1 5.4 112 201-312 115-242 (480)
141 PF13893 RRM_5: RNA recognitio 97.5 0.00014 3E-09 52.5 4.6 31 307-340 1-31 (56)
142 KOG4210|consensus 97.5 7.8E-05 1.7E-09 72.3 3.5 81 200-280 184-265 (285)
143 KOG1457|consensus 97.5 0.00082 1.8E-08 61.8 9.7 67 288-357 32-101 (284)
144 KOG0128|consensus 97.4 1.9E-05 4.2E-10 84.0 -1.5 147 200-346 571-725 (881)
145 KOG0533|consensus 97.4 0.00032 6.9E-09 66.1 6.6 53 288-340 81-134 (243)
146 KOG4849|consensus 97.4 0.00012 2.5E-09 71.1 3.1 72 202-273 82-156 (498)
147 KOG1548|consensus 97.4 0.00028 6.1E-09 68.5 5.6 59 289-347 133-200 (382)
148 KOG0115|consensus 97.4 0.00038 8.2E-09 65.1 6.2 76 254-341 6-83 (275)
149 KOG0106|consensus 97.4 0.00013 2.8E-09 67.4 3.0 69 198-274 97-166 (216)
150 KOG4661|consensus 97.2 0.00089 1.9E-08 68.7 7.8 56 291-346 406-463 (940)
151 PF08777 RRM_3: RNA binding mo 97.2 0.0005 1.1E-08 56.7 4.4 54 202-261 3-56 (105)
152 KOG0151|consensus 97.1 0.00096 2.1E-08 70.1 6.9 53 288-340 172-229 (877)
153 PF04059 RRM_2: RNA recognitio 97.1 0.0021 4.6E-08 52.2 7.2 66 291-362 2-71 (97)
154 KOG1855|consensus 97.0 0.0017 3.7E-08 64.8 7.5 60 288-347 229-303 (484)
155 KOG0129|consensus 97.0 0.00091 2E-08 68.1 5.5 64 198-261 368-432 (520)
156 PF14605 Nup35_RRM_2: Nup53/35 97.0 0.00089 1.9E-08 48.2 3.7 52 201-259 2-53 (53)
157 PF11608 Limkain-b1: Limkain b 96.9 0.0012 2.7E-08 51.7 4.1 66 202-277 4-75 (90)
158 PF08777 RRM_3: RNA binding mo 96.7 0.005 1.1E-07 50.8 6.3 54 292-349 3-56 (105)
159 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.0033 7.1E-08 51.4 4.1 75 201-276 7-89 (100)
160 KOG0115|consensus 96.4 0.0083 1.8E-07 56.3 6.5 73 201-274 32-109 (275)
161 KOG1855|consensus 96.3 0.0024 5.1E-08 63.7 2.3 71 199-269 230-313 (484)
162 KOG2314|consensus 95.6 0.018 3.9E-07 59.4 5.3 60 201-261 59-124 (698)
163 KOG3152|consensus 95.5 0.009 2E-07 56.1 2.5 70 201-270 75-157 (278)
164 PF08952 DUF1866: Domain of un 95.4 0.01 2.2E-07 51.5 2.6 73 198-278 25-106 (146)
165 KOG1995|consensus 95.2 0.032 7E-07 54.7 5.5 58 290-347 66-133 (351)
166 KOG2068|consensus 94.8 0.021 4.5E-07 55.7 3.0 112 201-312 78-202 (327)
167 KOG2135|consensus 94.7 0.013 2.7E-07 59.4 1.1 77 198-280 370-447 (526)
168 KOG2202|consensus 94.7 0.015 3.3E-07 54.6 1.5 61 216-277 84-146 (260)
169 PF14605 Nup35_RRM_2: Nup53/35 94.3 0.11 2.3E-06 37.3 4.9 49 291-344 2-50 (53)
170 KOG2253|consensus 94.2 0.07 1.5E-06 56.2 5.2 70 197-275 37-107 (668)
171 PF10309 DUF2414: Protein of u 93.9 0.15 3.3E-06 37.9 5.1 52 201-261 6-61 (62)
172 PF07292 NID: Nmi/IFP 35 domai 93.4 0.024 5.2E-07 45.2 0.2 68 245-312 1-74 (88)
173 KOG0921|consensus 93.3 0.93 2E-05 50.0 11.9 22 74-95 1175-1196(1282)
174 PF10567 Nab6_mRNP_bdg: RNA-re 93.3 0.81 1.8E-05 44.1 10.3 141 200-341 15-202 (309)
175 PF08675 RNA_bind: RNA binding 93.2 0.18 4E-06 39.6 4.8 54 200-261 8-61 (87)
176 KOG4676|consensus 93.1 0.094 2E-06 52.1 3.8 57 291-347 8-69 (479)
177 PF14111 DUF4283: Domain of un 92.9 0.18 3.9E-06 43.6 5.1 94 243-336 56-151 (153)
178 KOG2416|consensus 92.4 0.062 1.3E-06 55.9 1.5 63 196-264 440-504 (718)
179 KOG0112|consensus 92.4 0.18 3.9E-06 54.9 5.0 76 197-278 452-530 (975)
180 KOG4849|consensus 91.9 0.11 2.4E-06 50.9 2.5 50 291-340 81-134 (498)
181 KOG1996|consensus 90.2 0.65 1.4E-05 44.7 5.8 61 215-275 301-363 (378)
182 PF15023 DUF4523: Protein of u 89.4 0.86 1.9E-05 39.5 5.5 75 195-276 81-159 (166)
183 KOG2202|consensus 89.4 0.14 3E-06 48.3 0.7 76 305-387 83-160 (260)
184 PF08675 RNA_bind: RNA binding 89.1 1.2 2.6E-05 35.1 5.6 63 291-362 9-71 (87)
185 PF03467 Smg4_UPF3: Smg-4/UPF3 89.1 0.24 5.1E-06 44.7 2.0 72 199-270 6-84 (176)
186 PF07576 BRAP2: BRCA1-associat 88.7 2.4 5.3E-05 35.2 7.6 62 203-270 16-78 (110)
187 KOG1996|consensus 88.5 0.79 1.7E-05 44.2 5.1 54 304-363 300-356 (378)
188 KOG0921|consensus 87.7 7.1 0.00015 43.5 12.1 8 36-43 1167-1174(1282)
189 KOG2314|consensus 87.7 0.87 1.9E-05 47.5 5.2 63 290-355 58-127 (698)
190 KOG4285|consensus 87.4 0.83 1.8E-05 44.2 4.5 60 215-280 211-271 (350)
191 KOG2591|consensus 86.6 0.8 1.7E-05 47.7 4.2 67 200-273 175-246 (684)
192 PF11767 SET_assoc: Histone ly 85.9 1.5 3.2E-05 33.0 4.3 52 211-271 11-63 (66)
193 KOG2591|consensus 85.1 5 0.00011 42.0 8.9 76 255-346 150-228 (684)
194 PF05172 Nup35_RRM: Nup53/35/4 84.2 1.6 3.5E-05 35.6 4.2 59 290-355 6-73 (100)
195 PF11608 Limkain-b1: Limkain b 83.2 3.6 7.8E-05 32.6 5.5 54 291-355 3-61 (90)
196 COG5175 MOT2 Transcriptional r 82.6 2.5 5.5E-05 41.5 5.4 57 291-347 115-182 (480)
197 KOG3152|consensus 81.9 1.5 3.2E-05 41.6 3.4 37 289-325 73-109 (278)
198 TIGR02542 B_forsyth_147 Bacter 80.5 2.1 4.6E-05 35.7 3.5 110 208-337 11-126 (145)
199 PF03880 DbpA: DbpA RNA bindin 79.2 4.7 0.0001 30.7 5.0 58 210-276 11-74 (74)
200 KOG2416|consensus 77.5 2.3 5E-05 44.7 3.5 54 286-343 440-494 (718)
201 PF04847 Calcipressin: Calcipr 75.8 3.6 7.7E-05 37.4 4.0 61 213-279 8-71 (184)
202 PF03468 XS: XS domain; Inter 75.4 6.8 0.00015 32.8 5.3 63 292-355 10-82 (116)
203 PF07576 BRAP2: BRCA1-associat 73.4 30 0.00065 28.7 8.6 49 292-340 15-64 (110)
204 PF15023 DUF4523: Protein of u 73.4 10 0.00022 33.0 5.9 55 287-346 83-141 (166)
205 PF10309 DUF2414: Protein of u 72.8 14 0.00031 27.4 5.8 51 290-346 5-58 (62)
206 PF08952 DUF1866: Domain of un 72.7 4.2 9.1E-05 35.5 3.4 56 288-355 25-89 (146)
207 KOG4574|consensus 72.6 2.8 6E-05 45.9 2.7 75 200-280 298-375 (1007)
208 PF03467 Smg4_UPF3: Smg-4/UPF3 71.4 5.6 0.00012 35.8 4.1 53 289-341 6-66 (176)
209 KOG0804|consensus 71.2 8.8 0.00019 39.3 5.7 55 290-344 74-129 (493)
210 KOG2068|consensus 71.0 3.1 6.8E-05 40.8 2.5 57 291-347 78-142 (327)
211 KOG0804|consensus 70.4 10 0.00023 38.8 6.1 67 200-268 74-142 (493)
212 PF02084 Bindin: Bindin; Inte 70.0 79 0.0017 29.6 11.2 9 228-236 116-124 (238)
213 KOG2193|consensus 68.7 6.5 0.00014 39.9 4.2 58 291-352 2-59 (584)
214 KOG2318|consensus 63.1 23 0.0005 37.5 7.0 73 197-269 171-296 (650)
215 COG5193 LHP1 La protein, small 60.7 3.1 6.8E-05 41.8 0.3 62 199-260 173-244 (438)
216 KOG2253|consensus 59.6 12 0.00026 40.0 4.4 43 288-337 38-80 (668)
217 PRK07772 single-stranded DNA-b 55.3 87 0.0019 28.5 8.7 27 3-29 89-117 (186)
218 KOG4483|consensus 51.7 18 0.0004 36.5 4.0 53 201-260 392-445 (528)
219 KOG4574|consensus 50.7 12 0.00025 41.3 2.6 63 292-361 300-362 (1007)
220 PF10567 Nab6_mRNP_bdg: RNA-re 49.8 31 0.00067 33.6 5.0 48 290-337 15-71 (309)
221 KOG4285|consensus 48.0 63 0.0014 31.6 6.8 55 290-355 197-251 (350)
222 PF02714 DUF221: Domain of unk 44.5 33 0.00071 33.4 4.6 56 245-312 1-56 (325)
223 KOG2891|consensus 42.7 9.8 0.00021 36.6 0.5 35 290-324 149-195 (445)
224 PF09707 Cas_Cas2CT1978: CRISP 41.1 43 0.00094 26.5 3.9 46 291-337 26-71 (86)
225 KOG4410|consensus 35.3 64 0.0014 31.3 4.7 49 202-255 332-380 (396)
226 COG5638 Uncharacterized conser 35.2 1.3E+02 0.0029 30.6 7.1 40 196-235 142-186 (622)
227 PF03468 XS: XS domain; Inter 35.0 48 0.001 27.7 3.5 46 212-260 29-75 (116)
228 PF15513 DUF4651: Domain of un 33.1 47 0.001 24.7 2.7 19 305-323 9-27 (62)
229 KOG2295|consensus 32.3 12 0.00025 39.4 -0.8 62 200-261 231-292 (648)
230 KOG1924|consensus 31.4 3E+02 0.0066 30.7 9.3 12 18-29 493-504 (1102)
231 PF15513 DUF4651: Domain of un 30.7 1.1E+02 0.0023 22.8 4.2 18 215-232 9-26 (62)
232 PRK14548 50S ribosomal protein 29.6 2E+02 0.0044 22.6 6.0 54 292-346 22-77 (84)
233 PF00403 HMA: Heavy-metal-asso 29.2 1.5E+02 0.0032 20.9 5.0 46 292-341 1-46 (62)
234 PF07292 NID: Nmi/IFP 35 domai 28.6 15 0.00032 29.3 -0.6 25 198-222 50-74 (88)
235 TIGR03636 L23_arch archaeal ri 28.4 2.3E+02 0.0049 21.9 6.0 53 292-345 15-69 (77)
236 PF02084 Bindin: Bindin; Inte 28.3 95 0.0021 29.1 4.4 12 76-87 214-225 (238)
237 KOG0156|consensus 27.9 1.1E+02 0.0023 32.2 5.4 60 203-271 35-97 (489)
238 PF15547 DUF4654: Domain of un 27.8 29 0.00063 29.4 1.0 16 7-22 11-26 (138)
239 KOG4410|consensus 27.7 79 0.0017 30.7 3.9 46 291-340 331-377 (396)
240 PRK11558 putative ssRNA endonu 26.9 97 0.0021 25.2 3.8 48 291-339 28-75 (97)
241 COG3254 Uncharacterized conser 26.8 1.8E+02 0.0038 24.0 5.3 44 215-261 27-70 (105)
242 smart00157 PRP Major prion pro 26.8 2.5E+02 0.0054 25.6 6.7 7 219-225 129-135 (217)
243 PF14893 PNMA: PNMA 26.5 54 0.0012 32.6 2.8 48 290-337 18-69 (331)
244 KOG2891|consensus 26.2 50 0.0011 31.9 2.4 36 198-233 147-194 (445)
245 PF07530 PRE_C2HC: Associated 26.2 56 0.0012 24.6 2.2 61 215-277 2-63 (68)
246 PF04847 Calcipressin: Calcipr 26.0 1.5E+02 0.0032 26.9 5.3 43 302-348 7-49 (184)
247 smart00833 CobW_C Cobalamin sy 25.2 1.3E+02 0.0029 23.0 4.4 22 290-314 70-91 (92)
248 PF00403 HMA: Heavy-metal-asso 24.9 2.1E+02 0.0045 20.2 5.1 53 203-261 2-58 (62)
249 smart00157 PRP Major prion pro 23.7 2.7E+02 0.0059 25.4 6.3 8 299-306 144-151 (217)
250 PF13046 DUF3906: Protein of u 22.1 86 0.0019 23.4 2.4 33 303-335 31-63 (64)
251 PF11411 DNA_ligase_IV: DNA li 21.6 65 0.0014 21.3 1.5 16 210-225 19-34 (36)
252 PF09707 Cas_Cas2CT1978: CRISP 20.5 1.5E+02 0.0034 23.4 3.8 47 201-250 26-72 (86)
253 PF04026 SpoVG: SpoVG; InterP 20.3 1.9E+02 0.0041 22.7 4.3 26 226-251 2-27 (84)
254 PF14893 PNMA: PNMA 20.2 1.3E+02 0.0028 30.0 4.1 25 198-222 16-40 (331)
255 cd04908 ACT_Bt0572_1 N-termina 20.2 3.4E+02 0.0073 19.4 6.4 46 215-264 16-62 (66)
256 TIGR02542 B_forsyth_147 Bacter 20.2 59 0.0013 27.3 1.4 47 208-254 82-131 (145)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=3.3e-30 Score=254.53 Aligned_cols=146 Identities=21% Similarity=0.366 Sum_probs=129.7
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPK 274 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~ 274 (388)
.....++|||+|||+++||++|+++|+.||+|++|+|++|+.|+++||||||+|.++++|++||+. ++.+|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 445678999999999999999999999999999999999999999999999999999999999987 8899999999999
Q ss_pred CCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 275 PCNPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 275 ~a~~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
++.+.. .....++|||+|||.++||++|+++|++||.|+.|+|++|+. ++++|+||+|++.+++++|
T Consensus 183 ~a~p~~-----~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~A 251 (346)
T TIGR01659 183 YARPGG-----ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEA 251 (346)
T ss_pred cccccc-----cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHH
Confidence 886533 223457899999999999999999999999999999999863 7899999999666544444
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.94 E-value=1.1e-26 Score=241.56 Aligned_cols=146 Identities=16% Similarity=0.347 Sum_probs=125.9
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
...++|||+||+++++|++|+++|++||+|.+|+|++|+.|+++||||||+|.++++|++||+. ++..|.||+|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 3457899999999999999999999999999999999999999999999999999999999987 889999999999865
Q ss_pred CCCCCCC------CCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhH
Q psy10362 277 NPRTLQK------PKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQ 343 (388)
Q Consensus 277 ~~~~~~~------~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~ 343 (388)
....... .......++|||+||+.++++++|+++|++||.|++|+|.+|+. ++|||+||+|++..++
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A 259 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 259 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHH
Confidence 4321111 11223457999999999999999999999999999999999864 6899999999655333
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=2.7e-26 Score=227.18 Aligned_cols=149 Identities=21% Similarity=0.415 Sum_probs=129.2
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCN 277 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~ 277 (388)
+..+|||+|||++++|++|+++|++||+|.+|+|++|+.+++++|||||+|.++++|++||+. ++..|.+++|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 357899999999999999999999999999999999999999999999999999999999987 8899999999999876
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC--CCCeeEEEEEcCChhhHHHHHHHHHHHhh
Q psy10362 278 PRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR--TIRAGITRVPTQELPVQKEATAVQQVLRR 355 (388)
Q Consensus 278 ~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~--~~~rG~aFV~F~~~~~~~~a~~a~~aL~~ 355 (388)
+... .....+|||+|||.++++++|+++|++||.|+.++|+.++ .++++|+||+|++.. .|+.+++.|..
T Consensus 82 ~~~~-----~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~---~A~~ai~~l~g 153 (352)
T TIGR01661 82 PSSD-----SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRD---EADRAIKTLNG 153 (352)
T ss_pred cccc-----ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHH---HHHHHHHHhCC
Confidence 5432 2345689999999999999999999999999999999886 368999999995543 34444444443
No 4
>KOG0144|consensus
Probab=99.94 E-value=1.7e-26 Score=224.15 Aligned_cols=158 Identities=23% Similarity=0.331 Sum_probs=134.4
Q ss_pred CCCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh--CCCCCCCC--C
Q psy10362 195 PSGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN--CPHTLDGR--T 270 (388)
Q Consensus 195 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~--~~~~l~Gr--~ 270 (388)
..+.+.-++||+-||..++|.||+++|++||.|.+|.|++||.|+.+||||||+|.+.++|.+||.+ +..+|.|- .
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 3345667899999999999999999999999999999999999999999999999999999999997 44677774 5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChhhHHHHHHH
Q psy10362 271 IDPKPCNPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELPVQKEATAV 349 (388)
Q Consensus 271 i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~~~~a~~a 349 (388)
|.|+++..+..+. ..+++|||+-|+..+||.||+++|++||.|++|+|++|.. .+||++||.| ...+.|..|
T Consensus 109 vqvk~Ad~E~er~----~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~f---stke~A~~A 181 (510)
T KOG0144|consen 109 VQVKYADGERERI----VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKF---STKEMAVAA 181 (510)
T ss_pred eeecccchhhhcc----ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEE---ehHHHHHHH
Confidence 6777775543322 4568999999999999999999999999999999999976 7999999999 444566666
Q ss_pred HHHHhhcccc
Q psy10362 350 QQVLRRSSTT 359 (388)
Q Consensus 350 ~~aL~~~~~~ 359 (388)
+++|..+.++
T Consensus 182 ika~ng~~tm 191 (510)
T KOG0144|consen 182 IKALNGTQTM 191 (510)
T ss_pred HHhhccceee
Confidence 7777665533
No 5
>KOG0148|consensus
Probab=99.93 E-value=2.2e-25 Score=205.42 Aligned_cols=151 Identities=23% Similarity=0.365 Sum_probs=129.3
Q ss_pred CCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCCCCC
Q psy10362 202 KPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCNPRT 280 (388)
Q Consensus 202 ~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~~~~ 280 (388)
.|||+.|..+++.++|++.|.+||+|.+++|++|..|++||||+||.|.+.++|+.||+. ++.-|..|.|+-+|+..+.
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 589999999999999999999999999999999999999999999999999999999998 8888999999999997665
Q ss_pred CCCC-----------CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHH
Q psy10362 281 LQKP-----------KKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAV 349 (388)
Q Consensus 281 ~~~~-----------~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a 349 (388)
.... +.+..+++|||+||+..+||++|++.|+.||.|.+|||++| +||+||.|+ ..+.|
T Consensus 144 ~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~----qGYaFVrF~------tkEaA 213 (321)
T KOG0148|consen 144 SEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD----QGYAFVRFE------TKEAA 213 (321)
T ss_pred cccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc----cceEEEEec------chhhH
Confidence 2211 12345689999999999999999999999999999999954 799999994 44444
Q ss_pred HHHHhhcccccee
Q psy10362 350 QQVLRRSSTTKVQ 362 (388)
Q Consensus 350 ~~aL~~~~~~~i~ 362 (388)
-.||..++..+|.
T Consensus 214 ahAIv~mNntei~ 226 (321)
T KOG0148|consen 214 AHAIVQMNNTEIG 226 (321)
T ss_pred HHHHHHhcCceeC
Confidence 5555555544443
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.92 E-value=3.5e-25 Score=232.90 Aligned_cols=142 Identities=18% Similarity=0.278 Sum_probs=125.0
Q ss_pred CCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCCCCC
Q psy10362 202 KPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCNPRT 280 (388)
Q Consensus 202 ~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~~~~ 280 (388)
+|||+|||+++||++|+++|++||+|++|+|.+|+.|++++|||||+|.+.++|++||+. +...|.++.|+|.++....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 599999999999999999999999999999999999999999999999999999999997 6677999999998875432
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChhhHHHH
Q psy10362 281 LQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 281 ~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~~~~a 346 (388)
. .+.....+|||.||+.++++++|+++|++||.|+.|+|++|.. ++++||||+|++..+++.|
T Consensus 82 ~---~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~A 145 (562)
T TIGR01628 82 S---LRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAA 145 (562)
T ss_pred c---ccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHH
Confidence 1 1223456899999999999999999999999999999998865 7999999999665544444
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=1.5e-24 Score=222.43 Aligned_cols=148 Identities=23% Similarity=0.332 Sum_probs=127.3
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~ 277 (388)
.+.++|||+|||+.+++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||..++..|.++.|.|+...
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred CCCCCC-------CCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHH
Q psy10362 278 PRTLQK-------PKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKE 345 (388)
Q Consensus 278 ~~~~~~-------~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~ 345 (388)
...... .......++|||+||+..+|+++|+++|++||.|+.|+|+.|+. ++++||||+|.+...+..
T Consensus 167 ~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 167 AEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred hhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 332111 11122357999999999999999999999999999999998864 789999999955543333
No 8
>KOG0117|consensus
Probab=99.91 E-value=2.7e-24 Score=209.76 Aligned_cols=165 Identities=18% Similarity=0.261 Sum_probs=131.2
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCC-CCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTL-DGRTIDPKP 275 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l-~Gr~i~v~~ 275 (388)
+.-+.|||+.||.++.|+||+.||++.|+|.+++|+.|+.+|.+||||||+|.+.++|++||+. |+++| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 3447799999999999999999999999999999999999999999999999999999999997 77765 456665543
Q ss_pred CCCCCC--------------------------------------------------------------------------
Q psy10362 276 CNPRTL-------------------------------------------------------------------------- 281 (388)
Q Consensus 276 a~~~~~-------------------------------------------------------------------------- 281 (388)
+.....
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 222110
Q ss_pred ----------CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHH
Q psy10362 282 ----------QKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQ 351 (388)
Q Consensus 282 ----------~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~ 351 (388)
.........+.|||.||+.++|+|.|+++|++||.|+.|+.++| |+||-| ...+++.+
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD------YaFVHf------~eR~davk 308 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD------YAFVHF------AEREDAVK 308 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc------eeEEee------cchHHHHH
Confidence 00000011167999999999999999999999999999999876 999999 66677777
Q ss_pred HHhhccccceeccCCCccCCCCC
Q psy10362 352 VLRRSSTTKVQAPFGATTLSPPN 374 (388)
Q Consensus 352 aL~~~~~~~i~~~~~~~~~~pP~ 374 (388)
|+..++...|.-...+.+|.+|.
T Consensus 309 Am~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 309 AMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred HHHHhcCceecCceEEEEecCCh
Confidence 77777766666655555555554
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.91 E-value=7.1e-24 Score=209.90 Aligned_cols=146 Identities=21% Similarity=0.267 Sum_probs=118.2
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCC--CCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDG--RTIDPKP 275 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~G--r~i~v~~ 275 (388)
..++|||+|||+++++++|+++|++||.|..++|+.++.++.++|||||+|.+.++|++||+. ++..+.+ ++|.|++
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 456899999999999999999999999999999999988999999999999999999999987 7777766 3455555
Q ss_pred CCCCCCCC-----------------C------------------------------------------------------
Q psy10362 276 CNPRTLQK-----------------P------------------------------------------------------ 284 (388)
Q Consensus 276 a~~~~~~~-----------------~------------------------------------------------------ 284 (388)
+....... .
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 43221000 0
Q ss_pred ----------------CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC--CCCeeEEEEEcCChhhHH
Q psy10362 285 ----------------KKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR--TIRAGITRVPTQELPVQK 344 (388)
Q Consensus 285 ----------------~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~--~~~rG~aFV~F~~~~~~~ 344 (388)
.......+|||+|||.++++++|+++|++||.|++|+|++|+ ++++|||||+|++..++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~ 325 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAA 325 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHH
Confidence 000111269999999999999999999999999999999996 379999999995554333
No 10
>KOG0145|consensus
Probab=99.91 E-value=3.6e-24 Score=196.36 Aligned_cols=153 Identities=20% Similarity=0.403 Sum_probs=135.1
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
++....|.|..||..+|++||+.||..+|+|++|||++||.+|+|.||+||.|.+++||++||.. ++..|..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34556799999999999999999999999999999999999999999999999999999999997 77888888888888
Q ss_pred CCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHHHHHHHHH
Q psy10362 276 CNPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEATAVQQVL 353 (388)
Q Consensus 276 a~~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a~~a~~aL 353 (388)
+.+.. +..+..+|||++||..+|..||.++|++||.|...+|+.|.. -+||.+||.|++. .+|++|.+.|
T Consensus 118 ARPSs-----~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr---~EAe~AIk~l 189 (360)
T KOG0145|consen 118 ARPSS-----DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKR---IEAEEAIKGL 189 (360)
T ss_pred ccCCh-----hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecch---hHHHHHHHhc
Confidence 76654 345678999999999999999999999999999999999864 6999999999554 5666777777
Q ss_pred hhcc
Q psy10362 354 RRSS 357 (388)
Q Consensus 354 ~~~~ 357 (388)
.+..
T Consensus 190 NG~~ 193 (360)
T KOG0145|consen 190 NGQK 193 (360)
T ss_pred cCCC
Confidence 7654
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.90 E-value=3.4e-23 Score=215.16 Aligned_cols=140 Identities=16% Similarity=0.230 Sum_probs=110.2
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCC-CCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLD-GRTIDPKPC 276 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~-Gr~i~v~~a 276 (388)
..++|||+|||++++|++|+++|++||.|.+|+|++| .++++||||||+|.++++|++||+. ++.+|. ++.|.|..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 3488999999999999999999999999999999999 7999999999999999999999997 666663 555544322
Q ss_pred CCCC--------------------------------------CC------------------------------------
Q psy10362 277 NPRT--------------------------------------LQ------------------------------------ 282 (388)
Q Consensus 277 ~~~~--------------------------------------~~------------------------------------ 282 (388)
.... ..
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 1000 00
Q ss_pred ----CC------CCCCCCCeEEEcCCCCCCCHHHHHHHhhcC--CCeeEEEEecCCCCCeeEEEEEcCChhhHHH
Q psy10362 283 ----KP------KKNSSFPKVFLGGLPSNVTETDLRTFFNRY--GKVMEVVIMSPRTIRAGITRVPTQELPVQKE 345 (388)
Q Consensus 283 ----~~------~~~~~~~~lfV~nLp~~vtee~L~~~F~~~--G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~ 345 (388)
.+ ......++|||+||+.++|+|+|+++|++| |.|+.|++++ +||||+|++.++++.
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r------gfAFVeF~s~e~A~k 284 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR------DYAFVHFEDREDAVK 284 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec------CeEEEEeCCHHHHHH
Confidence 00 000123679999999999999999999999 9999998874 499999955543333
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.89 E-value=5.5e-23 Score=216.31 Aligned_cols=144 Identities=19% Similarity=0.367 Sum_probs=125.4
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCNP 278 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~~ 278 (388)
..+|||+||++++++++|+++|++||.|++|+|++|+ ++++||||||+|.+.++|++||+. ++..+.++.|.|.....
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 4679999999999999999999999999999999984 788999999999999999999997 88899999998876655
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChhhHH
Q psy10362 279 RTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELPVQK 344 (388)
Q Consensus 279 ~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~~~ 344 (388)
+...........++|||.||+.++|+++|+++|++||.|++++|++|.. ++++|+||+|++..+++
T Consensus 167 ~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~ 233 (562)
T TIGR01628 167 KHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAA 233 (562)
T ss_pred ccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHH
Confidence 4433333445567899999999999999999999999999999998864 78999999996554333
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.88 E-value=2.8e-22 Score=207.21 Aligned_cols=147 Identities=13% Similarity=0.155 Sum_probs=119.3
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh---CCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN---CPHTLDGRTIDPKPC 276 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~---~~~~l~Gr~i~v~~a 276 (388)
+++|||+|||++++|++|+++|++||.|.+|+|+++ |+||||+|.+.++|++||+. +...|.|++|+|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 588999999999999999999999999999999865 46999999999999999984 567899999999988
Q ss_pred CCCCCCCCC-------CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHH
Q psy10362 277 NPRTLQKPK-------KNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAV 349 (388)
Q Consensus 277 ~~~~~~~~~-------~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a 349 (388)
..+...... ......+|||.||+..+|+++|+++|++||.|+.|+|++++ .+++|||+|++..++ ..|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~--~~~~afVef~~~~~A---~~A 150 (481)
T TIGR01649 76 TSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN--NVFQALVEFESVNSA---QHA 150 (481)
T ss_pred CCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC--CceEEEEEECCHHHH---HHH
Confidence 655422221 11223479999999999999999999999999999998764 357999999665443 444
Q ss_pred HHHHhhcc
Q psy10362 350 QQVLRRSS 357 (388)
Q Consensus 350 ~~aL~~~~ 357 (388)
++.|....
T Consensus 151 ~~~Lng~~ 158 (481)
T TIGR01649 151 KAALNGAD 158 (481)
T ss_pred HHHhcCCc
Confidence 44444443
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.87 E-value=9.1e-22 Score=203.40 Aligned_cols=139 Identities=18% Similarity=0.273 Sum_probs=116.2
Q ss_pred CCCCCCCcccCCC-cCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAY-GTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 198 ~~~~~vfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
+..++|||+||++ .+++++|+++|+.||.|.+|+|++++ +|||||+|.+.++|++||+. ++..|.|++|+|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4568999999998 69999999999999999999999874 58999999999999999987 88999999999987
Q ss_pred CCCCCCCCCC--------------------------------CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCC--eeEEE
Q psy10362 276 CNPRTLQKPK--------------------------------KNSSFPKVFLGGLPSNVTETDLRTFFNRYGK--VMEVV 321 (388)
Q Consensus 276 a~~~~~~~~~--------------------------------~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~--I~~v~ 321 (388)
++........ ...+.++|||.|||.++|+++|+++|+.||. |+.|+
T Consensus 348 s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik 427 (481)
T TIGR01649 348 SKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFK 427 (481)
T ss_pred cccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEE
Confidence 6543211000 0123468999999999999999999999998 88899
Q ss_pred EecCCCCCeeEEEEEcCChh
Q psy10362 322 IMSPRTIRAGITRVPTQELP 341 (388)
Q Consensus 322 v~~d~~~~rG~aFV~F~~~~ 341 (388)
++.++..++++|||+|++.+
T Consensus 428 ~~~~~~~~~~~gfVeF~~~e 447 (481)
T TIGR01649 428 FFPKDNERSKMGLLEWESVE 447 (481)
T ss_pred EecCCCCcceeEEEEcCCHH
Confidence 98766567899999995543
No 15
>KOG4205|consensus
Probab=99.87 E-value=1.9e-22 Score=194.83 Aligned_cols=148 Identities=40% Similarity=0.681 Sum_probs=133.8
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNP 278 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~~ 278 (388)
+.++|||++|+++++++.|++.|++||+|.+|.|++|+.++++|||+||+|++.+.+.++|....|.|+++.|.++.+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 67999999999999999999999999999999999999999999999999999999999999989999999999999988
Q ss_pred CCCCCC-CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 279 RTLQKP-KKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 279 ~~~~~~-~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
+..... ......++|||+.|+.++++++|++.|++||.|..+.++.|.. ++++|+||.|+++++++.+
T Consensus 85 r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv 155 (311)
T KOG4205|consen 85 REDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKV 155 (311)
T ss_pred cccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccccccee
Confidence 775433 3334567999999999999999999999999999999999975 7999999999666555544
No 16
>KOG0131|consensus
Probab=99.87 E-value=1.8e-22 Score=176.74 Aligned_cols=167 Identities=17% Similarity=0.220 Sum_probs=139.4
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
.....||||+||+..++++.|.+||-+.|+|.++.|.+|+.+...+|||||+|.++++|+-||+- +...|.||+|+|+.
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999996 77889999999998
Q ss_pred CCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEE-EEecCCC--CCeeEEEEEcCChhhHHHH-HHHHH
Q psy10362 276 CNPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEV-VIMSPRT--IRAGITRVPTQELPVQKEA-TAVQQ 351 (388)
Q Consensus 276 a~~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v-~v~~d~~--~~rG~aFV~F~~~~~~~~a-~~a~~ 351 (388)
+.... +......+|||+||.++|+|..|.++|+.||.|... +|++|.. ++++|+||.|++.+..++| ..++.
T Consensus 86 as~~~----~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ng 161 (203)
T KOG0131|consen 86 ASAHQ----KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNG 161 (203)
T ss_pred ccccc----ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhcc
Confidence 87221 122333799999999999999999999999998774 7888876 8999999999777666665 45555
Q ss_pred HHhhccccceeccCCC
Q psy10362 352 VLRRSSTTKVQAPFGA 367 (388)
Q Consensus 352 aL~~~~~~~i~~~~~~ 367 (388)
.+...+.+.+...+.+
T Consensus 162 q~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 162 QYLCNRPITVSYAFKK 177 (203)
T ss_pred chhcCCceEEEEEEec
Confidence 5555566666555443
No 17
>KOG0124|consensus
Probab=99.86 E-value=9.3e-22 Score=187.69 Aligned_cols=172 Identities=17% Similarity=0.321 Sum_probs=138.1
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCNP 278 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~~ 278 (388)
-|+|||+.|.+++.|+.|+..|..||+|++|.+-.|+.|+++|||+||+|+-+|.|+.|++. |+..|.||.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 47999999999999999999999999999999999999999999999999999999999998 88999999999985432
Q ss_pred CCCCC------CCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHHHHHH
Q psy10362 279 RTLQK------PKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEATAVQ 350 (388)
Q Consensus 279 ~~~~~------~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a~~a~ 350 (388)
-.... .++....++|||..+.++++|+||+.+|+.||+|++|.+.+++. ++|||+|++|.+..+..+|....
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 21111 11234568999999999999999999999999999999999975 79999999997665555554433
Q ss_pred HHHhhccccceeccCCCccCCCCC
Q psy10362 351 QVLRRSSTTKVQAPFGATTLSPPN 374 (388)
Q Consensus 351 ~aL~~~~~~~i~~~~~~~~~~pP~ 374 (388)
+.+.. ---.....+..+||..
T Consensus 273 NlFDL---GGQyLRVGk~vTPP~a 293 (544)
T KOG0124|consen 273 NLFDL---GGQYLRVGKCVTPPDA 293 (544)
T ss_pred chhhc---ccceEecccccCCCch
Confidence 33322 1122234455555543
No 18
>KOG0109|consensus
Probab=99.86 E-value=5.8e-22 Score=184.53 Aligned_cols=146 Identities=25% Similarity=0.381 Sum_probs=125.8
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCNPR 279 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~~~ 279 (388)
.+|||+|||.++++++|+.||++||+|++|.|+++ |+||-.++...++.||++ ++.+|+|..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999998 999999999999999997 889999999999887655
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhhcc--
Q psy10362 280 TLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRRSS-- 357 (388)
Q Consensus 280 ~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~-- 357 (388)
+...++|+|+||.+..+.+||++.|++||.|.+|+|++| |+||.| +.++.+.+++...+
T Consensus 75 -------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd------y~fvh~------d~~eda~~air~l~~~ 135 (346)
T KOG0109|consen 75 -------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD------YAFVHF------DRAEDAVEAIRGLDNT 135 (346)
T ss_pred -------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc------eeEEEE------eeccchHHHHhccccc
Confidence 245579999999999999999999999999999999976 899999 55566666665554
Q ss_pred -----ccceeccCCCccCCCC
Q psy10362 358 -----TTKVQAPFGATTLSPP 373 (388)
Q Consensus 358 -----~~~i~~~~~~~~~~pP 373 (388)
.+.+|.+++|....|+
T Consensus 136 ~~~gk~m~vq~stsrlrtapg 156 (346)
T KOG0109|consen 136 EFQGKRMHVQLSTSRLRTAPG 156 (346)
T ss_pred ccccceeeeeeeccccccCCC
Confidence 5556666666655554
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.85 E-value=9.2e-21 Score=196.80 Aligned_cols=145 Identities=10% Similarity=0.157 Sum_probs=113.0
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhcc------------CceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRY------------GEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCP 263 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~------------G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~ 263 (388)
.....++|||+|||+.+|+++|++||+.+ ..|..+++. +.++||||+|.+.++|..||+.++
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al~l~g 244 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAMALDS 244 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhhcCCC
Confidence 34567899999999999999999999875 234444443 356899999999999999998788
Q ss_pred CCCCCCCCCCCCCCCCCCCC------------------------CCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE
Q psy10362 264 HTLDGRTIDPKPCNPRTLQK------------------------PKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVME 319 (388)
Q Consensus 264 ~~l~Gr~i~v~~a~~~~~~~------------------------~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~ 319 (388)
..|.++.|+|.......... .......++|||+|||..+|+++|+++|+.||.|+.
T Consensus 245 ~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~ 324 (509)
T TIGR01642 245 IIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKA 324 (509)
T ss_pred eEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE
Confidence 99999999887543221000 001123478999999999999999999999999999
Q ss_pred EEEecCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 320 VVIMSPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 320 v~v~~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
++|+++.. +++|||||+|.+...+..|
T Consensus 325 ~~~~~~~~~g~~~g~afv~f~~~~~a~~A 353 (509)
T TIGR01642 325 FNLIKDIATGLSKGYAFCEYKDPSVTDVA 353 (509)
T ss_pred EEEEecCCCCCcCeEEEEEECCHHHHHHH
Confidence 99998853 6899999999665444333
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.84 E-value=1.9e-20 Score=194.49 Aligned_cols=158 Identities=16% Similarity=0.237 Sum_probs=123.4
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
...++|||+|||+.+++++|+++|+.||.|..+.|++++.+++++|||||+|.+.++|..||+. ++..|.+++|.|+++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4457899999999999999999999999999999999999999999999999999999999987 889999999998887
Q ss_pred CCCCCCCCC-----------------------CCCCCCeEEEcCCCCC--C--------CHHHHHHHhhcCCCeeEEEEe
Q psy10362 277 NPRTLQKPK-----------------------KNSSFPKVFLGGLPSN--V--------TETDLRTFFNRYGKVMEVVIM 323 (388)
Q Consensus 277 ~~~~~~~~~-----------------------~~~~~~~lfV~nLp~~--v--------tee~L~~~F~~~G~I~~v~v~ 323 (388)
......... .....++|+|.||... + ..++|+++|++||.|+.|+|.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 543211100 0123467899998531 1 236789999999999999999
Q ss_pred cCCC-----CCeeEEEEEcCChhhHHHHHHHHHHHhhccccce
Q psy10362 324 SPRT-----IRAGITRVPTQELPVQKEATAVQQVLRRSSTTKV 361 (388)
Q Consensus 324 ~d~~-----~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~~~~i 361 (388)
++.. ..+|++||+|++ .+.|.+||..++..++
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~------~e~A~~A~~~lnGr~~ 489 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYAD------VRSAEKAMEGMNGRKF 489 (509)
T ss_pred ccCcCCCcCCCcceEEEEECC------HHHHHHHHHHcCCCEE
Confidence 7631 457999999944 3444555555444444
No 21
>KOG0127|consensus
Probab=99.83 E-value=2.7e-20 Score=185.46 Aligned_cols=150 Identities=20% Similarity=0.363 Sum_probs=126.0
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCNP 278 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~~ 278 (388)
.-+|.|.|||+.+.+.||+.+|+.||.|.+|.|.+.+. ++..|||||.|.+..+|+.||+. +.++|.||+|.|.||-.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 46899999999999999999999999999999997754 45559999999999999999998 89999999999988754
Q ss_pred CCCCC----------------------CC------------------C--C-----------------------------
Q psy10362 279 RTLQK----------------------PK------------------K--N----------------------------- 287 (388)
Q Consensus 279 ~~~~~----------------------~~------------------~--~----------------------------- 287 (388)
...-. .. . +
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 32100 00 0 0
Q ss_pred ----------CC----CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHHHHHHH
Q psy10362 288 ----------SS----FPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEATAVQQ 351 (388)
Q Consensus 288 ----------~~----~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a~~a~~ 351 (388)
.. .++|||.|||+++|+++|.++|++||+|.++.|+.++. +++|.|||.| .++.++++
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~F------kt~~~~~~ 349 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKF------KTQIAAQN 349 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEe------ccHHHHHH
Confidence 00 05799999999999999999999999999999998875 7999999999 66777777
Q ss_pred HHhhc
Q psy10362 352 VLRRS 356 (388)
Q Consensus 352 aL~~~ 356 (388)
||...
T Consensus 350 ci~~A 354 (678)
T KOG0127|consen 350 CIEAA 354 (678)
T ss_pred HHHhc
Confidence 77765
No 22
>KOG0127|consensus
Probab=99.83 E-value=3.5e-20 Score=184.71 Aligned_cols=163 Identities=23% Similarity=0.381 Sum_probs=138.9
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCNPR 279 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~~~ 279 (388)
.||||++||+.++.++|.++|+.+|+|..+.++.++.++.+|||+||+|.-.+++++|++. .+..|.||.|.|..+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 7899999999999999999999999999999999999999999999999999999999998 888999999999998876
Q ss_pred CCCCCC-------------------C--CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEc
Q psy10362 280 TLQKPK-------------------K--NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPT 337 (388)
Q Consensus 280 ~~~~~~-------------------~--~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F 337 (388)
...... . ..+..+|.|.|||+.+.+++|+.+|+.||.|.+|.|.+..+ +-+||+||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 543210 0 11235799999999999999999999999999999997765 6679999999
Q ss_pred CChhhHHHHHHHHHHHhhccccceeccCCCcc
Q psy10362 338 QELPVQKEATAVQQVLRRSSTTKVQAPFGATT 369 (388)
Q Consensus 338 ~~~~~~~~a~~a~~aL~~~~~~~i~~~~~~~~ 369 (388)
+...+|.+||..++..+|.-.....-
T Consensus 166 ------k~~~dA~~Al~~~N~~~i~gR~VAVD 191 (678)
T KOG0127|consen 166 ------KEKKDAEKALEFFNGNKIDGRPVAVD 191 (678)
T ss_pred ------eeHHHHHHHHHhccCceecCceeEEe
Confidence 56666777777777777655544443
No 23
>KOG0145|consensus
Probab=99.80 E-value=2.1e-19 Score=165.20 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=124.3
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCC--CCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDG--RTIDPK 274 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~G--r~i~v~ 274 (388)
.....|||++||..+|..||+++|++||.|...+|+.|..|+.+||.+||.|+..++|+.||.. +++.-.+ .+|.|+
T Consensus 125 Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVK 204 (360)
T KOG0145|consen 125 IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVK 204 (360)
T ss_pred hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEE
Confidence 4456799999999999999999999999999999999999999999999999999999999997 6665555 357777
Q ss_pred CCCCCCCCCC-----------------------C-----------------------------------CCCCCCeEEEc
Q psy10362 275 PCNPRTLQKP-----------------------K-----------------------------------KNSSFPKVFLG 296 (388)
Q Consensus 275 ~a~~~~~~~~-----------------------~-----------------------------------~~~~~~~lfV~ 296 (388)
++........ . ....-..|||-
T Consensus 205 FannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvY 284 (360)
T KOG0145|consen 205 FANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVY 284 (360)
T ss_pred ecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEE
Confidence 6653221000 0 00001469999
Q ss_pred CCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHHHHHHHHHhhc
Q psy10362 297 GLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEATAVQQVLRRS 356 (388)
Q Consensus 297 nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a~~a~~aL~~~ 356 (388)
||.++.+|..|.++|.+||.|..|+|++|.. +.|||+||...+.+++. .|...|.+.
T Consensus 285 NLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAa---mAi~sLNGy 343 (360)
T KOG0145|consen 285 NLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA---MAIASLNGY 343 (360)
T ss_pred ecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHH---HHHHHhcCc
Confidence 9999999999999999999999999999965 79999999986654443 444444443
No 24
>KOG0148|consensus
Probab=99.79 E-value=2.6e-19 Score=165.43 Aligned_cols=108 Identities=15% Similarity=0.203 Sum_probs=92.3
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPC 276 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a 276 (388)
.++.|||||+||+.++||+-|..||+++|.|+++|||.| .|+|.++
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~wa 48 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNWA 48 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhccccc
Confidence 356799999999999999999999999999999999987 3566666
Q ss_pred CCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcC
Q psy10362 277 NPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQ 338 (388)
Q Consensus 277 ~~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~ 338 (388)
..............-+|||+.|..+|+.|+|++.|.+||+|.+++|++|.. |+|||+||.|-
T Consensus 49 ~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~ 112 (321)
T KOG0148|consen 49 TAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFP 112 (321)
T ss_pred cCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEecc
Confidence 554333333334467899999999999999999999999999999999975 89999999993
No 25
>KOG0123|consensus
Probab=99.79 E-value=6.7e-19 Score=175.30 Aligned_cols=128 Identities=19% Similarity=0.264 Sum_probs=115.9
Q ss_pred CCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCCCCC
Q psy10362 202 KPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCNPRT 280 (388)
Q Consensus 202 ~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~~~~ 280 (388)
.|||+ +++||..|.++|+.+|+|++++|.+|- | +.|||||.|.++++|++||++ +-..+.|++|++-|+....
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 58999 999999999999999999999999997 6 999999999999999999998 6678999999999876443
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 281 LQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 281 ~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
. .|||.||+++++..+|.++|+.||.|++|+|.+|++-+++| ||+|+++.+++.+
T Consensus 77 ~----------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~a 131 (369)
T KOG0123|consen 77 S----------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKA 131 (369)
T ss_pred c----------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHH
Confidence 2 29999999999999999999999999999999998889999 9999666554444
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.79 E-value=1.2e-18 Score=178.74 Aligned_cols=139 Identities=22% Similarity=0.321 Sum_probs=113.8
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCNP 278 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~~ 278 (388)
.++|||+||++.+++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|.+||+. ++..|.+++|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 68999999999999999999999999999999999999999999999999999999999986 88999999999988532
Q ss_pred CCCC-----------------------------------C----------------------------------------
Q psy10362 279 RTLQ-----------------------------------K---------------------------------------- 283 (388)
Q Consensus 279 ~~~~-----------------------------------~---------------------------------------- 283 (388)
.... .
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 1000 0
Q ss_pred ----------CCCCCCCCeEEEcCCCCCCC----------HHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCCh
Q psy10362 284 ----------PKKNSSFPKVFLGGLPSNVT----------ETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQEL 340 (388)
Q Consensus 284 ----------~~~~~~~~~lfV~nLp~~vt----------ee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~ 340 (388)
.......+.|+|.||-...+ .+||++.|++||.|+.|.|... ...|++||+|.+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~--~~~G~~fV~F~~~ 420 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK--NSAGKIYLKFSSV 420 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC--CCceeEEEEECCH
Confidence 00012235688888865544 3689999999999999999743 5789999999444
No 27
>KOG0105|consensus
Probab=99.75 E-value=6.2e-18 Score=148.60 Aligned_cols=135 Identities=18% Similarity=0.203 Sum_probs=112.5
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
..+++|||+|||.++.|.||++||-+||.|.+|.|... .....||||+|+++.+|+.||.. ++..+.+..|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45689999999999999999999999999999987543 23456999999999999999997 899999999999987
Q ss_pred CCCCCCC---------------------CCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEE
Q psy10362 277 NPRTLQK---------------------PKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRV 335 (388)
Q Consensus 277 ~~~~~~~---------------------~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV 335 (388)
....... +-...+...|.|.+||++-++++|+++..+.|.|..+.|.+| +++.|
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-----g~GvV 155 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-----GVGVV 155 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-----cceee
Confidence 6432110 111233468999999999999999999999999999999987 58899
Q ss_pred EcCCh
Q psy10362 336 PTQEL 340 (388)
Q Consensus 336 ~F~~~ 340 (388)
+|...
T Consensus 156 ~~~r~ 160 (241)
T KOG0105|consen 156 EYLRK 160 (241)
T ss_pred eeeeh
Confidence 98433
No 28
>KOG0146|consensus
Probab=99.75 E-value=9.4e-18 Score=154.83 Aligned_cols=169 Identities=17% Similarity=0.243 Sum_probs=129.9
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CC-CCCCCC--CCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CP-HTLDGR--TIDPK 274 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~-~~l~Gr--~i~v~ 274 (388)
++|+|||+-|...-.|+|++.+|..||+|++|.+++. .++.+||++||+|.+..+|..||.. ++ .++.|. .|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 6799999999999999999999999999999999998 4799999999999999999999997 43 344442 33444
Q ss_pred CCCCCCCCCCC---------------------------------------------------------------------
Q psy10362 275 PCNPRTLQKPK--------------------------------------------------------------------- 285 (388)
Q Consensus 275 ~a~~~~~~~~~--------------------------------------------------------------------- 285 (388)
++....++...
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 44322110000
Q ss_pred --------CC----------------------------------------------------------------------
Q psy10362 286 --------KN---------------------------------------------------------------------- 287 (388)
Q Consensus 286 --------~~---------------------------------------------------------------------- 287 (388)
..
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 00
Q ss_pred --------------------------CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCC
Q psy10362 288 --------------------------SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQE 339 (388)
Q Consensus 288 --------------------------~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~ 339 (388)
.+-++|||-.||.+..+.||.+.|-.||.|++.+|+.|+. .+|.|+||.|++
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 0006899999999999999999999999999999999984 699999999988
Q ss_pred hhhHHHHHH-HHHHHhhccccceeccCCCc
Q psy10362 340 LPVQKEATA-VQQVLRRSSTTKVQAPFGAT 368 (388)
Q Consensus 340 ~~~~~~a~~-a~~aL~~~~~~~i~~~~~~~ 368 (388)
..++..+.. ++....+++.+|++.++-+.
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 877776643 33334445566666655444
No 29
>KOG0144|consensus
Probab=99.74 E-value=4.1e-18 Score=166.05 Aligned_cols=82 Identities=22% Similarity=0.367 Sum_probs=71.3
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CC-CCCCC--CCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CP-HTLDG--RTIDP 273 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~-~~l~G--r~i~v 273 (388)
.++++|||+-|+..++|.||+++|++||.|++|.|++| ..+.||||+||+|.+.+.|..||+. ++ +++.| .+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 44789999999999999999999999999999999999 5799999999999999999999997 43 45555 46778
Q ss_pred CCCCCCC
Q psy10362 274 KPCNPRT 280 (388)
Q Consensus 274 ~~a~~~~ 280 (388)
+++..+.
T Consensus 201 kFADtqk 207 (510)
T KOG0144|consen 201 KFADTQK 207 (510)
T ss_pred EecccCC
Confidence 8776543
No 30
>KOG0123|consensus
Probab=99.70 E-value=7.9e-17 Score=160.50 Aligned_cols=138 Identities=20% Similarity=0.364 Sum_probs=121.2
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCN 277 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~ 277 (388)
+...|||-||+++++..+|.++|+.||.|++|+|..|. .+ +||| ||+|++++.|++||+. ++..+.+++|.|....
T Consensus 75 d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 75 DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 33449999999999999999999999999999999995 45 9999 9999999999999998 8899999999998877
Q ss_pred CCCCCCCC---CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCC
Q psy10362 278 PRTLQKPK---KNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQE 339 (388)
Q Consensus 278 ~~~~~~~~---~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~ 339 (388)
.+..+... .....+.++|.+++.++++++|.++|+.+|.|..+.|..+.. ++++|+||+|++
T Consensus 152 ~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~ 217 (369)
T KOG0123|consen 152 RKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFEN 217 (369)
T ss_pred chhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecC
Confidence 65543322 234457899999999999999999999999999999999875 689999999966
No 31
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.69 E-value=4.9e-17 Score=141.86 Aligned_cols=83 Identities=35% Similarity=0.544 Sum_probs=77.8
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
...++|||+||+++++|++|+++|++||+|++|+|++|+.|+++||||||+|.++++|++||+. ++.+|.+++|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4557899999999999999999999999999999999999999999999999999999999986 889999999999998
Q ss_pred CCCC
Q psy10362 277 NPRT 280 (388)
Q Consensus 277 ~~~~ 280 (388)
..+.
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 7654
No 32
>KOG0110|consensus
Probab=99.67 E-value=2.2e-16 Score=162.14 Aligned_cols=153 Identities=22% Similarity=0.343 Sum_probs=122.6
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCC---CceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETG---RSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg---~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
.+|||.||.+++|.++|+.+|...|.|+++.|.+-+.-. .|.||+||+|.++++|++|++. +++.|.|+.|.|+.+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 349999999999999999999999999999886643221 3569999999999999999998 669999999999888
Q ss_pred CCCCCCC--C--CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC--CCCeeEEEEEcCChhhHHHHHHHH
Q psy10362 277 NPRTLQK--P--KKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR--TIRAGITRVPTQELPVQKEATAVQ 350 (388)
Q Consensus 277 ~~~~~~~--~--~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~--~~~rG~aFV~F~~~~~~~~a~~a~ 350 (388)
....... . ......++|.|.|||...+..+|+++|..||.|.+|+|.... ..++||+||+| .+.+.+..|.
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f---~t~~ea~nA~ 672 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDF---LTPREAKNAF 672 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeec---cCcHHHHHHH
Confidence 7222111 1 112234689999999999999999999999999999999763 35899999999 4445566666
Q ss_pred HHHhhc
Q psy10362 351 QVLRRS 356 (388)
Q Consensus 351 ~aL~~~ 356 (388)
++|..+
T Consensus 673 ~al~ST 678 (725)
T KOG0110|consen 673 DALGST 678 (725)
T ss_pred Hhhccc
Confidence 666633
No 33
>KOG0147|consensus
Probab=99.67 E-value=5.1e-17 Score=162.89 Aligned_cols=152 Identities=19% Similarity=0.261 Sum_probs=128.9
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKP 275 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~ 275 (388)
...+.++||+.-|+..+++.||.+||+.+|.|.+|.||.|+.+.++||.+||+|.|.+.+..||...+..+.|.+|.|+.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQL 254 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecc
Confidence 34557899999999999999999999999999999999999999999999999999999999998888888999888876
Q ss_pred CCCCCCCC---------CCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC--CCCeeEEEEEcCChhhHH
Q psy10362 276 CNPRTLQK---------PKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR--TIRAGITRVPTQELPVQK 344 (388)
Q Consensus 276 a~~~~~~~---------~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~--~~~rG~aFV~F~~~~~~~ 344 (388)
........ .....+...|||+||...+|+++|+.+|+.||.|+.|.+..|. +.++||+||+|.+...++
T Consensus 255 sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar 334 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDAR 334 (549)
T ss_pred cHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHH
Confidence 55432211 1122333459999999999999999999999999999999995 489999999996665555
Q ss_pred HHH
Q psy10362 345 EAT 347 (388)
Q Consensus 345 ~a~ 347 (388)
.|.
T Consensus 335 ~a~ 337 (549)
T KOG0147|consen 335 KAL 337 (549)
T ss_pred HHH
Confidence 553
No 34
>KOG4212|consensus
Probab=99.65 E-value=8.4e-16 Score=150.08 Aligned_cols=149 Identities=21% Similarity=0.260 Sum_probs=122.4
Q ss_pred CCCCCcccCCCcCcHHHHHHHHh-ccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFS-RYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCN 277 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~-~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~ 277 (388)
.|.|||.|||+++.|+||++||. +.|+|+.|.|+.| .++++||+|.|+|+++|.+++|++. +.+++++|+|.|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 35599999999999999999995 7799999999999 5899999999999999999999998 8899999999988654
Q ss_pred CCCCC-----------------------------------------CCCC------------------------------
Q psy10362 278 PRTLQ-----------------------------------------KPKK------------------------------ 286 (388)
Q Consensus 278 ~~~~~-----------------------------------------~~~~------------------------------ 286 (388)
..... ...+
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 31100 0000
Q ss_pred ---------CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChhhHHHHHHH
Q psy10362 287 ---------NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELPVQKEATAV 349 (388)
Q Consensus 287 ---------~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~~~~a~~a 349 (388)
.....++||.||...|..+.|++.|.-.|.|+.|.+-.|+. ++++|+.++|+...++..+..+
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsm 275 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISM 275 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHh
Confidence 00115799999999999999999999999999999988875 8999999999655544444333
No 35
>KOG0149|consensus
Probab=99.65 E-value=1e-16 Score=146.10 Aligned_cols=82 Identities=29% Similarity=0.506 Sum_probs=77.0
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPC 276 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a 276 (388)
+..-.+|||++|+|+++.++|+++|++||+|+++.|+.||.|++||||+||+|.|.++|++||+..+..|+||+..|+.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 34457899999999999999999999999999999999999999999999999999999999999888999999999887
Q ss_pred CC
Q psy10362 277 NP 278 (388)
Q Consensus 277 ~~ 278 (388)
..
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 65
No 36
>KOG4211|consensus
Probab=99.63 E-value=2.5e-15 Score=149.15 Aligned_cols=147 Identities=18% Similarity=0.209 Sum_probs=116.2
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~ 277 (388)
++...|-+.+|||++|++||.+||+.+. |+++++.+ .+++..|-|||+|.++++++.|++++...+..|-|+|..+.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAG 84 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccC
Confidence 4455677899999999999999999994 78866665 48999999999999999999999999999999999998876
Q ss_pred CCCCCCC------CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEEecCC-CCCeeEEEEEcCChhhHHHHH
Q psy10362 278 PRTLQKP------KKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVME-VVIMSPR-TIRAGITRVPTQELPVQKEAT 347 (388)
Q Consensus 278 ~~~~~~~------~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~-v~v~~d~-~~~rG~aFV~F~~~~~~~~a~ 347 (388)
..+.... .....+..|.+.+||..+|++||.+||+-.-.|.. +-++.|+ .++.+.|||+|++...++.|.
T Consensus 85 ~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 85 GAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred CccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHH
Confidence 5443211 11235678999999999999999999998855555 3445554 489999999995554444443
No 37
>KOG4206|consensus
Probab=99.61 E-value=8.6e-15 Score=133.07 Aligned_cols=146 Identities=21% Similarity=0.320 Sum_probs=120.2
Q ss_pred CCCCcccCCCcCcHHHHHH----HHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQQR----YFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~----~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
.||||.||...+..++|++ ||++||.|.+|...+ |.+.||-|||.|.+.+.|..|+++ .+..+.|+.+++.+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 4999999999999999888 999999999998875 677999999999999999999998 88999999999988
Q ss_pred CCCCCCCCC---------------------------------------------CCCCCCCeEEEcCCCCCCCHHHHHHH
Q psy10362 276 CNPRTLQKP---------------------------------------------KKNSSFPKVFLGGLPSNVTETDLRTF 310 (388)
Q Consensus 276 a~~~~~~~~---------------------------------------------~~~~~~~~lfV~nLp~~vtee~L~~~ 310 (388)
|........ ........||+.|||.+++.+.|..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 765431100 01234468999999999999999999
Q ss_pred hhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhh
Q psy10362 311 FNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRR 355 (388)
Q Consensus 311 F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~ 355 (388)
|+.|...+.|+++.. ..+.+||+|.+++. +..++++|..
T Consensus 167 f~qf~g~keir~i~~---~~~iAfve~~~d~~---a~~a~~~lq~ 205 (221)
T KOG4206|consen 167 FEQFPGFKEIRLIPP---RSGIAFVEFLSDRQ---ASAAQQALQG 205 (221)
T ss_pred HhhCcccceeEeccC---CCceeEEecchhhh---hHHHhhhhcc
Confidence 999999999999963 57899999976654 3444444444
No 38
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.57 E-value=2.6e-14 Score=149.51 Aligned_cols=79 Identities=14% Similarity=0.305 Sum_probs=73.5
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCN 277 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~ 277 (388)
..++|||+||++++++++|+++|+.||+|++|+|.+|+.++++||||||+|.+.++|.+||+. ++.+|.|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 457899999999999999999999999999999999999999999999999999999999998 8889999998876544
No 39
>KOG0125|consensus
Probab=99.57 E-value=1.8e-14 Score=136.73 Aligned_cols=96 Identities=22% Similarity=0.385 Sum_probs=83.1
Q ss_pred CCCCCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCC
Q psy10362 193 PNPSGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTI 271 (388)
Q Consensus 193 ~~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i 271 (388)
..++....+||+|+|||+...|.||+.+|++||+|++|.||.+ ..-||||+||+|++.+||++|-++ ++..+.||+|
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkI 166 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKI 166 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence 3444566799999999999999999999999999999999997 456999999999999999999998 9999999999
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q psy10362 272 DPKPCNPRTLQKPKKNSSF 290 (388)
Q Consensus 272 ~v~~a~~~~~~~~~~~~~~ 290 (388)
+|+.+..+-..++.+....
T Consensus 167 EVn~ATarV~n~K~~v~p~ 185 (376)
T KOG0125|consen 167 EVNNATARVHNKKKKVLPY 185 (376)
T ss_pred EEeccchhhccCCcccCCC
Confidence 9999998855544443333
No 40
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.56 E-value=3.1e-14 Score=132.56 Aligned_cols=127 Identities=21% Similarity=0.427 Sum_probs=109.1
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCNP 278 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~~ 278 (388)
.++|||+||++++++++|+++|+.||.|..+.|..|+.+++++|||||+|.++++|..||.. ++..|.+++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999999999999999999999999999998 66999999999998542
Q ss_pred ----CCCCC---------------CCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC
Q psy10362 279 ----RTLQK---------------PKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326 (388)
Q Consensus 279 ----~~~~~---------------~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~ 326 (388)
+.... .........+++.+++..++.+++...|..++.+..+.+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 21111 1112234679999999999999999999999999777766554
No 41
>KOG1457|consensus
Probab=99.50 E-value=2.2e-13 Score=123.23 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=108.8
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEee-cCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCC---CCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMK-NNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLD---GRTID 272 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~---Gr~i~ 272 (388)
...|||||.+||.++...||..||..|--.+.+.|.. ++...-++-++||+|.+..+|++|+.+ ++..|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 4579999999999999999999999886666555533 344444667999999999999999997 666554 33455
Q ss_pred CCCCCCCCCCCCCCC-----------------------------------------------------------------
Q psy10362 273 PKPCNPRTLQKPKKN----------------------------------------------------------------- 287 (388)
Q Consensus 273 v~~a~~~~~~~~~~~----------------------------------------------------------------- 287 (388)
++.++.....++.+.
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 554443221110000
Q ss_pred ----------------CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHH
Q psy10362 288 ----------------SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQ 351 (388)
Q Consensus 288 ----------------~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~ 351 (388)
..+.+|||.||...+|||+|+.+|++|.....++|... ....++||+| .+.+.+.+
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g~~vaf~~~------~~~~~at~ 263 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GGMPVAFADF------EEIEQATD 263 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CCcceEeecH------HHHHHHHH
Confidence 00147999999999999999999999998888888742 4667899999 44444444
Q ss_pred HHhhccc
Q psy10362 352 VLRRSST 358 (388)
Q Consensus 352 aL~~~~~ 358 (388)
++...+.
T Consensus 264 am~~lqg 270 (284)
T KOG1457|consen 264 AMNHLQG 270 (284)
T ss_pred HHHHhhc
Confidence 4444443
No 42
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.50 E-value=2.8e-14 Score=107.50 Aligned_cols=69 Identities=22% Similarity=0.461 Sum_probs=64.5
Q ss_pred CCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCC
Q psy10362 203 PPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTID 272 (388)
Q Consensus 203 vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~ 272 (388)
|||+|||+++++++|+++|++||.|..+++..+ .++++++||||+|.+.++|++|++. ++..+.+++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 699999999999999999999999999999998 6889999999999999999999996 88888888764
No 43
>KOG0122|consensus
Probab=99.47 E-value=4.7e-14 Score=129.24 Aligned_cols=82 Identities=18% Similarity=0.298 Sum_probs=77.3
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
.+.++|-|.||+.+++|+||++||..||.|.+|.|.+|+.||.+||||||.|.+.++|.+||+. +++-++..-|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 4778999999999999999999999999999999999999999999999999999999999997 788888888999998
Q ss_pred CCC
Q psy10362 277 NPR 279 (388)
Q Consensus 277 ~~~ 279 (388)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 764
No 44
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.47 E-value=8.7e-14 Score=137.89 Aligned_cols=81 Identities=15% Similarity=0.277 Sum_probs=73.1
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCC--CCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDG--RTIDPKP 275 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~G--r~i~v~~ 275 (388)
..++|||+|||+++||++|+++|++||+|++|+|++|+.|+++|+||||+|.+.++|++||+. ++..|.+ ++|+|++
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 456899999999999999999999999999999999999999999999999999999999997 7777766 5777777
Q ss_pred CCCC
Q psy10362 276 CNPR 279 (388)
Q Consensus 276 a~~~ 279 (388)
+...
T Consensus 272 a~~~ 275 (346)
T TIGR01659 272 AEEH 275 (346)
T ss_pred CCcc
Confidence 6644
No 45
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.46 E-value=6.8e-14 Score=145.98 Aligned_cols=113 Identities=13% Similarity=0.138 Sum_probs=96.8
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhcc--CceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRY--GEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~--G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
..++|||+||+++++|++|+++|++| |+|++|+++++ ||||+|.+.++|++||+. ++.+|.++.|+|.+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg--------fAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD--------YAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC--------eEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 99999988754 999999999999999987 88999999999999
Q ss_pred CCCCCCCCC-----------------------CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE
Q psy10362 276 CNPRTLQKP-----------------------KKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVME 319 (388)
Q Consensus 276 a~~~~~~~~-----------------------~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~ 319 (388)
+++...... ..+....+++++||+.+.+++-+.++|..+|.|..
T Consensus 304 Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~~ 370 (578)
T TIGR01648 304 AKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIRG 370 (578)
T ss_pred ccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCccccC
Confidence 977543200 01123578999999999999999999999998664
No 46
>KOG0121|consensus
Probab=99.44 E-value=8.8e-14 Score=115.83 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=74.5
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
..+++|||+||++.++|++|.+||+++|+|..|.+-.|+.+..+.|||||+|.+.++|+.|++. ++..|+.+.|++.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 4578999999999999999999999999999999999999999999999999999999999998 888999999988775
No 47
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.44 E-value=2.7e-13 Score=127.35 Aligned_cols=77 Identities=16% Similarity=0.238 Sum_probs=71.1
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPR 279 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~~~ 279 (388)
.++|||+||++.++|++|+++|+.||+|.+|+|++|+. +++||||+|.++++|+.||..++..|.++.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 47899999999999999999999999999999999864 468999999999999999988999999999999987644
No 48
>KOG0129|consensus
Probab=99.43 E-value=1.3e-12 Score=130.89 Aligned_cols=180 Identities=21% Similarity=0.274 Sum_probs=121.4
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCC--Ccee---EEEEEeCChHhHHHHHHhCCCC-------C
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETG--RSRG---FGFVTFADPNNVGVVIQNCPHT-------L 266 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg--~skG---~gFV~F~~~~~A~~Ai~~~~~~-------l 266 (388)
-+++|||++||++++|+.|...|..||.+.--+-.+....+ -++| |.|+.|+++.++...|.++-.. +
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~v 337 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKV 337 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEE
Confidence 36899999999999999999999999987543332222222 2467 9999999999999888753221 2
Q ss_pred CCCCCCCCCCCCCC--------C-CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhh-cCCCeeEEEEecCCC--CCeeEEE
Q psy10362 267 DGRTIDPKPCNPRT--------L-QKPKKNSSFPKVFLGGLPSNVTETDLRTFFN-RYGKVMEVVIMSPRT--IRAGITR 334 (388)
Q Consensus 267 ~Gr~i~v~~a~~~~--------~-~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~-~~G~I~~v~v~~d~~--~~rG~aF 334 (388)
.-.+++.+....+. . .........+||||+.||.-++.+||..+|+ .||.|.+|-|-+|++ -++|-+.
T Consensus 338 ss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGR 417 (520)
T KOG0129|consen 338 SSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGR 417 (520)
T ss_pred ecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcce
Confidence 22222222111111 1 1122334568999999999999999999999 999999999999964 5999999
Q ss_pred EEcCChhhHHHHHHHHHHHhhccccceeccCCCccCCCCC-CCCCCCCce
Q psy10362 335 VPTQELPVQKEATAVQQVLRRSSTTKVQAPFGATTLSPPN-LTTPTGECR 383 (388)
Q Consensus 335 V~F~~~~~~~~a~~a~~aL~~~~~~~i~~~~~~~~~~pP~-~~~~~~~~r 383 (388)
|+|.+..+..+|.+|. ....+..+ ...|..+.|.. ...-|.+|-
T Consensus 418 VtFsnqqsYi~AIsar--Fvql~h~d---~~KRVEIkPYv~eDq~CdeC~ 462 (520)
T KOG0129|consen 418 VTFSNQQAYIKAISAR--FVQLDHTD---IDKRVEIKPYVMEDQLCDECG 462 (520)
T ss_pred eeecccHHHHHHHhhh--eEEEeccc---cceeeeecceeccccchhhhc
Confidence 9995544333332221 11111222 22366677777 777888884
No 49
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.43 E-value=2e-13 Score=103.65 Aligned_cols=69 Identities=28% Similarity=0.486 Sum_probs=62.2
Q ss_pred CCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCC
Q psy10362 203 PPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTID 272 (388)
Q Consensus 203 vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~ 272 (388)
|||+|||+++++++|+++|+.+|.|.++++..++. ++++++|||+|.++++|++|++. ++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 68999999999999999999999999999999977 89999999999999999999998 55888888763
No 50
>KOG0147|consensus
Probab=99.42 E-value=4.1e-13 Score=135.11 Aligned_cols=76 Identities=24% Similarity=0.451 Sum_probs=70.9
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
++|||+||.++++|++|+.+|+.||.|..|.+.+|..||++|||+||+|.+.++|.+|+.. ++.+|.||.|+|...
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 3499999999999999999999999999999999988999999999999999999999887 889999999987543
No 51
>KOG0113|consensus
Probab=99.42 E-value=2.6e-13 Score=127.48 Aligned_cols=84 Identities=19% Similarity=0.329 Sum_probs=77.2
Q ss_pred CCCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCC
Q psy10362 195 PSGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDP 273 (388)
Q Consensus 195 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v 273 (388)
+..++-+||||+-|+++++|.+|+..|+.||+|+.|.|++|+.|++++|||||+|+++.+...|.+. ++..|+++.|.|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 4456679999999999999999999999999999999999999999999999999999999999987 999999999987
Q ss_pred CCCCC
Q psy10362 274 KPCNP 278 (388)
Q Consensus 274 ~~a~~ 278 (388)
..-..
T Consensus 176 DvERg 180 (335)
T KOG0113|consen 176 DVERG 180 (335)
T ss_pred Eeccc
Confidence 65443
No 52
>KOG0107|consensus
Probab=99.38 E-value=3.4e-13 Score=118.05 Aligned_cols=78 Identities=23% Similarity=0.308 Sum_probs=70.4
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCN 277 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~ 277 (388)
-.++|||+||+..+++.||+.+|.+||+|.+|||.+++ .|||||+|+|..+|+.|+.. ++..|.|..|+|+...
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 35889999999999999999999999999999998864 48999999999999999997 8899999999998876
Q ss_pred CCCC
Q psy10362 278 PRTL 281 (388)
Q Consensus 278 ~~~~ 281 (388)
-...
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 5543
No 53
>KOG0106|consensus
Probab=99.38 E-value=3.9e-13 Score=123.21 Aligned_cols=140 Identities=21% Similarity=0.323 Sum_probs=109.7
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCNPR 279 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~~~ 279 (388)
.+|||++|++.+.+.||..||..||.|.+|.+.. +|+||+|.|..+|+.||.. ++.+|.+.++.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4799999999999999999999999999988765 4999999999999999987 788888888777777642
Q ss_pred CCC--------------CC-CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHH
Q psy10362 280 TLQ--------------KP-KKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQK 344 (388)
Q Consensus 280 ~~~--------------~~-~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~ 344 (388)
... .. ........|+|.+|+..+.+.+|.++|+.+|.+.++.+ .+.++||+| .
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------~~~~~~v~F------s 141 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------RRNFAFVEF------S 141 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh------hccccceee------h
Confidence 110 00 11234567999999999999999999999999955544 567899999 4
Q ss_pred HHHHHHHHHhhccccc
Q psy10362 345 EATAVQQVLRRSSTTK 360 (388)
Q Consensus 345 ~a~~a~~aL~~~~~~~ 360 (388)
++.++..+|......+
T Consensus 142 ~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 142 EQEDAKRALEKLDGKK 157 (216)
T ss_pred hhhhhhhcchhccchh
Confidence 4455555555544333
No 54
>KOG4207|consensus
Probab=99.37 E-value=4.7e-13 Score=119.89 Aligned_cols=83 Identities=27% Similarity=0.368 Sum_probs=77.5
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
.+....|-|-||.+.++.++|+.+|++||.|-+|.|.+|+.|..++|||||.|.+..+|+.|+++ ++.+|+|+.|.|++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 34456799999999999999999999999999999999999999999999999999999999998 99999999999988
Q ss_pred CCCC
Q psy10362 276 CNPR 279 (388)
Q Consensus 276 a~~~ 279 (388)
|...
T Consensus 90 aryg 93 (256)
T KOG4207|consen 90 ARYG 93 (256)
T ss_pred hhcC
Confidence 7654
No 55
>KOG0126|consensus
Probab=99.37 E-value=2.2e-14 Score=126.09 Aligned_cols=83 Identities=23% Similarity=0.362 Sum_probs=76.6
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
.++.-|||++||+++||.||.-+|++||+|++|.|++|+.||+|+||||+.|+|..+...|+.+ ++..|.+|.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4567799999999999999999999999999999999999999999999999999999999998 899999999999876
Q ss_pred CCCC
Q psy10362 277 NPRT 280 (388)
Q Consensus 277 ~~~~ 280 (388)
....
T Consensus 113 ~~Yk 116 (219)
T KOG0126|consen 113 SNYK 116 (219)
T ss_pred cccc
Confidence 5443
No 56
>KOG1190|consensus
Probab=99.34 E-value=9.7e-12 Score=121.17 Aligned_cols=139 Identities=14% Similarity=0.213 Sum_probs=110.5
Q ss_pred CCCCCcccCCCc-CcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYG-TYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCN 277 (388)
Q Consensus 200 ~~~vfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~ 277 (388)
...|.|.||..+ +|.+-|..+|..||+|.+|+|+.+|.+ .|+|.+.|...|+.|++. +++.+.+++|+|..++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 467889999765 899999999999999999999998754 799999999999999998 8999999999998877
Q ss_pred CCCCCCCCC------------------------------CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC
Q psy10362 278 PRTLQKPKK------------------------------NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT 327 (388)
Q Consensus 278 ~~~~~~~~~------------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~ 327 (388)
......+.. ..+..+|+++|+|.+|+||+|++.|...|-......+..
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~-- 449 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ-- 449 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC--
Confidence 654332210 012258999999999999999999998887655544433
Q ss_pred CCeeEEEEEcCChhhHHH
Q psy10362 328 IRAGITRVPTQELPVQKE 345 (388)
Q Consensus 328 ~~rG~aFV~F~~~~~~~~ 345 (388)
+.+-++++.+++.+++..
T Consensus 450 kd~kmal~q~~sveeA~~ 467 (492)
T KOG1190|consen 450 KDRKMALPQLESVEEAIQ 467 (492)
T ss_pred CCcceeecccCChhHhhh
Confidence 456789999955543333
No 57
>smart00362 RRM_2 RNA recognition motif.
Probab=99.31 E-value=4.6e-12 Score=94.29 Aligned_cols=71 Identities=21% Similarity=0.376 Sum_probs=64.2
Q ss_pred CCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCC
Q psy10362 202 KPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPK 274 (388)
Q Consensus 202 ~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~ 274 (388)
+|||.|||..+++++|+++|++||.|.++++..++ +.+++++||+|.+.++|++|++. ++..+.+++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999886 67889999999999999999997 6678888877653
No 58
>smart00360 RRM RNA recognition motif.
Probab=99.30 E-value=8.3e-12 Score=92.45 Aligned_cols=69 Identities=22% Similarity=0.478 Sum_probs=63.4
Q ss_pred cccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCC
Q psy10362 205 ADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDP 273 (388)
Q Consensus 205 VgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v 273 (388)
|+|||..+++++|+++|++||.|.++++..++.++++++||||+|.+.++|.+|++. ++..+.+++|+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 679999999999999999999999999999988899999999999999999999987 667788887765
No 59
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.29 E-value=3.5e-12 Score=118.15 Aligned_cols=76 Identities=11% Similarity=0.115 Sum_probs=69.1
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~ 277 (388)
...+|||+||++.+||++|++||+.||+|.+|+|++|. ++++||||+|.++++|+.||..++.+|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 34789999999999999999999999999999999984 44579999999999999999989999999999887754
No 60
>KOG0111|consensus
Probab=99.28 E-value=9.3e-13 Score=118.95 Aligned_cols=85 Identities=24% Similarity=0.359 Sum_probs=80.2
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
...|+|||++|..+++|.-|...|-.||.|.+|++..|..+.++|||+||+|+..++|.+||.+ +..+|.||.|+|+++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 4568999999999999999999999999999999999999999999999999999999999998 889999999999999
Q ss_pred CCCCCC
Q psy10362 277 NPRTLQ 282 (388)
Q Consensus 277 ~~~~~~ 282 (388)
++....
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 886643
No 61
>PLN03213 repressor of silencing 3; Provisional
Probab=99.26 E-value=5.4e-12 Score=125.31 Aligned_cols=77 Identities=13% Similarity=0.188 Sum_probs=70.0
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCCh--HhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADP--NNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~--~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
...+||||||+++++++||+.+|+.||.|.+|.|++ .|+ ||||||+|.+. +++.+||.. ++.++.||.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 346899999999999999999999999999999994 567 89999999987 789999997 89999999999998
Q ss_pred CCCC
Q psy10362 276 CNPR 279 (388)
Q Consensus 276 a~~~ 279 (388)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8764
No 62
>KOG4454|consensus
Probab=99.26 E-value=2.8e-12 Score=115.85 Aligned_cols=126 Identities=17% Similarity=0.135 Sum_probs=106.0
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPK 274 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~ 274 (388)
+.+..+||||.||...++|+.|.+||-+.|+|.+|+|..++ +++.| ||||.|.++..+.-|++. ++..|.++.|.++
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 34667999999999999999999999999999999998885 45666 999999999999999997 7777888877766
Q ss_pred CCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEc
Q psy10362 275 PCNPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPT 337 (388)
Q Consensus 275 ~a~~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F 337 (388)
+-.-.... -|...++++.+.++|+..+.|+.+++.++.+ +++.+.|+.+
T Consensus 83 ~r~G~sha--------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~ 132 (267)
T KOG4454|consen 83 LRCGNSHA--------------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTY 132 (267)
T ss_pred cccCCCcc--------------hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhh
Confidence 53221110 1667789999999999999999999999875 7889999987
No 63
>KOG1548|consensus
Probab=99.25 E-value=5.1e-11 Score=114.14 Aligned_cols=149 Identities=15% Similarity=0.234 Sum_probs=115.8
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCcee--------EEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEVI--------DCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTI 271 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I~--------~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i 271 (388)
..|||.|||.++|.+++.++|++||.|. .|+|+++. .|+.||-|++.|...++++.||.. +...|.|+.|
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 3499999999999999999999999885 48999995 499999999999999999999997 8889999999
Q ss_pred CCCCCCCCCCC---------------------------------CCCCCCCCCeEEEcCCCC----CCC-------HHHH
Q psy10362 272 DPKPCNPRTLQ---------------------------------KPKKNSSFPKVFLGGLPS----NVT-------ETDL 307 (388)
Q Consensus 272 ~v~~a~~~~~~---------------------------------~~~~~~~~~~lfV~nLp~----~vt-------ee~L 307 (388)
+|..|+..... ..++....++|.|.||=. ..+ +++|
T Consensus 214 rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl 293 (382)
T KOG1548|consen 214 RVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDL 293 (382)
T ss_pred EEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHH
Confidence 99877643210 011123346888888742 222 3577
Q ss_pred HHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhhccc
Q psy10362 308 RTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRRSST 358 (388)
Q Consensus 308 ~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~~ 358 (388)
++.+++||.|..|.|+.. ++.|.+.|.| ...++|..|+..+..
T Consensus 294 ~eec~K~G~v~~vvv~d~--hPdGvvtV~f------~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 294 TEECEKFGQVRKVVVYDR--HPDGVVTVSF------RNNEEADQCIQTMDG 336 (382)
T ss_pred HHHHHHhCCcceEEEecc--CCCceeEEEe------CChHHHHHHHHHhcC
Confidence 788999999999999843 7899999999 444555555555543
No 64
>KOG0124|consensus
Probab=99.25 E-value=6.2e-11 Score=114.06 Aligned_cols=77 Identities=14% Similarity=0.322 Sum_probs=69.6
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
-.+|||..+.++++|+||+..|+.||+|++|+|.+++.++.+|||+||+|.+..+...||.. |-..|.|..|+|..+
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 35899999999999999999999999999999999998889999999999999999999987 556788887776543
No 65
>KOG0108|consensus
Probab=99.24 E-value=8.3e-12 Score=126.06 Aligned_cols=80 Identities=24% Similarity=0.391 Sum_probs=76.3
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCNPR 279 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~~~ 279 (388)
+.|||+|||++++|++|.++|+..|.|.+++++.|+.||++|||+|++|.++++|++|++. ++.++.+|+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8899999999999999999999999999999999999999999999999999999999998 889999999999987654
Q ss_pred C
Q psy10362 280 T 280 (388)
Q Consensus 280 ~ 280 (388)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 66
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.23 E-value=5.1e-11 Score=104.02 Aligned_cols=59 Identities=24% Similarity=0.393 Sum_probs=50.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
...++|||+||+.++||++|+++|++||.|++|+|++|+. ++++||||+|++.+.++.|
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~A 92 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHH
Confidence 3457899999999999999999999999999999999864 7899999999555433333
No 67
>KOG0130|consensus
Probab=99.20 E-value=9.4e-12 Score=104.66 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=76.1
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCNPR 279 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~~~ 279 (388)
--|||.++...++|++|.+.|..||+|+++.|..|+.||..|||++|+|++..+|++||.. |+.+|.+..|.|.|+...
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 4589999999999999999999999999999999999999999999999999999999998 889999999999998765
Q ss_pred CC
Q psy10362 280 TL 281 (388)
Q Consensus 280 ~~ 281 (388)
..
T Consensus 153 gp 154 (170)
T KOG0130|consen 153 GP 154 (170)
T ss_pred CC
Confidence 43
No 68
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.18 E-value=5.9e-11 Score=88.71 Aligned_cols=72 Identities=21% Similarity=0.407 Sum_probs=64.6
Q ss_pred CCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCC
Q psy10362 202 KPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPK 274 (388)
Q Consensus 202 ~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~ 274 (388)
+|+|++||+.+++++|+++|+.+|.|.++.+..++.+ ++++++||+|.+.++|..|++. +...+++++|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 5899999999999999999999999999999988655 7789999999999999999997 6666888887764
No 69
>KOG0110|consensus
Probab=99.16 E-value=1.5e-10 Score=119.77 Aligned_cols=144 Identities=18% Similarity=0.240 Sum_probs=105.3
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCNP 278 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~~ 278 (388)
.+.|+|+|||..+..++|.++|..||+|.+|.+.. .|. -++|+|.+..+|..|++. .-..+....+++.++..
T Consensus 385 ~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~---~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~ 458 (725)
T KOG0110|consen 385 DTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPP---GGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPE 458 (725)
T ss_pred cceeeeccCccccccHHHHHHhhcccccceeecCc---ccc---eeeeeecCccchHHHHHHhchhhhccCccccccChh
Confidence 46789999999999999999999999999984432 221 489999999999999986 33345555555554432
Q ss_pred CCCC--------------C----C--------------CC-------------CCCCCeEEEcCCCCCCCHHHHHHHhhc
Q psy10362 279 RTLQ--------------K----P--------------KK-------------NSSFPKVFLGGLPSNVTETDLRTFFNR 313 (388)
Q Consensus 279 ~~~~--------------~----~--------------~~-------------~~~~~~lfV~nLp~~vtee~L~~~F~~ 313 (388)
.... . + .+ ....++|||.||+.+.|.++|..+|++
T Consensus 459 dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k 538 (725)
T KOG0110|consen 459 DVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSK 538 (725)
T ss_pred hhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHh
Confidence 1111 0 0 00 001134999999999999999999999
Q ss_pred CCCeeEEEEecCCC-----CCeeEEEEEcCChhhHHHHHHH
Q psy10362 314 YGKVMEVVIMSPRT-----IRAGITRVPTQELPVQKEATAV 349 (388)
Q Consensus 314 ~G~I~~v~v~~d~~-----~~rG~aFV~F~~~~~~~~a~~a 349 (388)
.|.|+.+.|...++ .+.||+||+|.+..++..|..+
T Consensus 539 ~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~ 579 (725)
T KOG0110|consen 539 QGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKA 579 (725)
T ss_pred cCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHH
Confidence 99999998886543 2669999999766655555443
No 70
>KOG0149|consensus
Probab=99.13 E-value=4.9e-11 Score=109.13 Aligned_cols=69 Identities=22% Similarity=0.527 Sum_probs=57.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHH-HHHHHHHhh
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEA-TAVQQVLRR 355 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a-~~a~~aL~~ 355 (388)
+...++|||++|+++.++|+|+++|++||+|++++|+.|+. ++|||+||+|.|.+++.+| ++.+-+|++
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdG 80 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDG 80 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccc
Confidence 45568999999999999999999999999999999999986 8999999999777666666 333334433
No 71
>KOG0146|consensus
Probab=99.12 E-value=5.8e-11 Score=110.20 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=76.8
Q ss_pred CCCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCC
Q psy10362 195 PSGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDP 273 (388)
Q Consensus 195 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v 273 (388)
-.+++.|.|||-.||.+..+.||.++|-.||.|.+.||+.|+.|..||.|+||.|+++.+|+.||.+ |+..|.=++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 3468889999999999999999999999999999999999999999999999999999999999998 777777777777
Q ss_pred CCCCCCC
Q psy10362 274 KPCNPRT 280 (388)
Q Consensus 274 ~~a~~~~ 280 (388)
..-+++.
T Consensus 360 QLKRPkd 366 (371)
T KOG0146|consen 360 QLKRPKD 366 (371)
T ss_pred hhcCccc
Confidence 6655443
No 72
>KOG4205|consensus
Probab=99.08 E-value=5.8e-11 Score=115.23 Aligned_cols=119 Identities=29% Similarity=0.415 Sum_probs=97.1
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPR 279 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~~~ 279 (388)
.++|||+.||.+++|++|+++|++||.|..+.++.|+.+.++|+|+||+|++++++++++...-++|+++.+.|+.|.++
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk 176 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPK 176 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccch
Confidence 45899999999999999999999999999999999999999999999999999999999998889999999999999998
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCee
Q psy10362 280 TLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVM 318 (388)
Q Consensus 280 ~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~ 318 (388)
.................++....+.-.|...|.-|+.+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~ 215 (311)
T KOG4205|consen 177 EVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVG 215 (311)
T ss_pred hhccccccccccccccccccccccccccchhccccCccc
Confidence 765544332222233334444445555666777776664
No 73
>smart00361 RRM_1 RNA recognition motif.
Probab=99.05 E-value=3.4e-10 Score=86.39 Aligned_cols=60 Identities=27% Similarity=0.403 Sum_probs=53.8
Q ss_pred HHHHHHHHh----ccCceeEEE-EeecCCC--CCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCC
Q psy10362 214 AQYQQRYFS----RYGEVIDCV-VMKNNET--GRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDP 273 (388)
Q Consensus 214 e~~L~~~F~----~~G~I~~v~-i~~dk~t--g~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v 273 (388)
+++|+++|+ +||.|.+|. |+.++.+ +++|||+||+|.+.++|.+||+. ++..+.+|.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999995 8888777 89999999999999999999997 888888888765
No 74
>KOG1190|consensus
Probab=99.05 E-value=1.6e-10 Score=112.78 Aligned_cols=146 Identities=13% Similarity=0.176 Sum_probs=106.5
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh---CCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN---CPHTLDGRTIDPK 274 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~---~~~~l~Gr~i~v~ 274 (388)
..++.|+++|||++++|+||.+++..||.|+.+.+++.++ .|||+|.|+++|..-+.. -...|.++.|.|.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 4568899999999999999999999999999999988765 799999999988774332 2235667777666
Q ss_pred CCCCCCCCC------------------------CCC-----------CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE
Q psy10362 275 PCNPRTLQK------------------------PKK-----------NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVME 319 (388)
Q Consensus 275 ~a~~~~~~~------------------------~~~-----------~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~ 319 (388)
++....... ... ....-.++|.++-..||-|-|..+|++||.|..
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlK 179 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLK 179 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEE
Confidence 544322100 000 011135788999999999999999999999998
Q ss_pred EEEecCCCCCeeEEEEEcCChhhHHHHHHHHH
Q psy10362 320 VVIMSPRTIRAGITRVPTQELPVQKEATAVQQ 351 (388)
Q Consensus 320 v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~ 351 (388)
|.-+.. ...=-|+|+|.|.+++..|+.+++
T Consensus 180 IiTF~K--nn~FQALvQy~d~~sAq~AK~aLd 209 (492)
T KOG1190|consen 180 IITFTK--NNGFQALVQYTDAVSAQAAKLALD 209 (492)
T ss_pred EEEEec--ccchhhhhhccchhhHHHHHHhcc
Confidence 877753 233458899977665555544433
No 75
>KOG0114|consensus
Probab=99.04 E-value=3.5e-10 Score=91.20 Aligned_cols=78 Identities=15% Similarity=0.197 Sum_probs=67.1
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
...+-|||.|||+++|.+++.++|.+||.|..|+|-.++. .+|.|||.|++..+|.+|++. .+..+.++.|.|-.-
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 4456789999999999999999999999999999987665 578999999999999999997 677788887776654
Q ss_pred CC
Q psy10362 277 NP 278 (388)
Q Consensus 277 ~~ 278 (388)
.+
T Consensus 93 q~ 94 (124)
T KOG0114|consen 93 QP 94 (124)
T ss_pred CH
Confidence 43
No 76
>KOG0120|consensus
Probab=99.04 E-value=9.8e-10 Score=111.94 Aligned_cols=155 Identities=18% Similarity=0.186 Sum_probs=113.5
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
....++||++||..+++++++++...||++....++.|..++.+++|||.+|.+......||+. ++..+.+++|.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 4567899999999999999999999999999999999999999999999999999999999997 778888888888777
Q ss_pred CCCCCCCCCCCC--CC--------------CeEEEcCCCCCCCH-------------HHHHHHhhcCCCeeEEEEecC-C
Q psy10362 277 NPRTLQKPKKNS--SF--------------PKVFLGGLPSNVTE-------------TDLRTFFNRYGKVMEVVIMSP-R 326 (388)
Q Consensus 277 ~~~~~~~~~~~~--~~--------------~~lfV~nLp~~vte-------------e~L~~~F~~~G~I~~v~v~~d-~ 326 (388)
............ .. ..-.|--|-..||+ |+++..+.+||.|..|.|-++ .
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYP 446 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCC
Confidence 654321110000 00 00011112222333 355677889999999999988 3
Q ss_pred C----CCeeEEEEEcCChhhHHHHHHHHHHHhh
Q psy10362 327 T----IRAGITRVPTQELPVQKEATAVQQVLRR 355 (388)
Q Consensus 327 ~----~~rG~aFV~F~~~~~~~~a~~a~~aL~~ 355 (388)
. -..|-+||+|.+. ..++.|+++|.+
T Consensus 447 ~~~~~~G~GkVFVefas~---ed~qrA~~~L~G 476 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADT---EDSQRAMEELTG 476 (500)
T ss_pred CCCcCCCcccEEEEecCh---HHHHHHHHHccC
Confidence 3 4679999999444 444444555544
No 77
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.01 E-value=7.5e-10 Score=83.07 Aligned_cols=48 Identities=31% Similarity=0.626 Sum_probs=44.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecC-CCCCeeEEEEEcCCh
Q psy10362 293 VFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSP-RTIRAGITRVPTQEL 340 (388)
Q Consensus 293 lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d-~~~~rG~aFV~F~~~ 340 (388)
|||+|||.++|+++|+++|++||.|..+++..+ ..+.+++|||+|++.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~ 49 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESE 49 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSH
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCH
Confidence 799999999999999999999999999999996 458999999999544
No 78
>KOG0117|consensus
Probab=99.00 E-value=2.6e-10 Score=112.46 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=71.4
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCN 277 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~ 277 (388)
..+.|||.||+.++||+.|+++|++||.|++|+.++| ||||-|.+.++|.+|++. ++.+|+|..|.|..|+
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 3567999999999999999999999999999999988 999999999999999998 9999999999999999
Q ss_pred CCCCCC
Q psy10362 278 PRTLQK 283 (388)
Q Consensus 278 ~~~~~~ 283 (388)
+....+
T Consensus 330 P~~k~k 335 (506)
T KOG0117|consen 330 PVDKKK 335 (506)
T ss_pred Chhhhc
Confidence 876543
No 79
>KOG1456|consensus
Probab=98.99 E-value=6.4e-09 Score=100.67 Aligned_cols=155 Identities=15% Similarity=0.154 Sum_probs=114.2
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh---CCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN---CPHTLDGRTIDPKP 275 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~---~~~~l~Gr~i~v~~ 275 (388)
.+-.|.|.+|-..++|.||.+.++.||.|..|.++..+. .+.|+|+|.+.|+.++.. +...+.+..-.++.
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 345689999999999999999999999998887776533 799999999999999873 45567777777777
Q ss_pred CCCCCCCCCCCC--CCCCeEEEc--CCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHH
Q psy10362 276 CNPRTLQKPKKN--SSFPKVFLG--GLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQ 351 (388)
Q Consensus 276 a~~~~~~~~~~~--~~~~~lfV~--nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~ 351 (388)
+....++.+.++ ..++.|.+. |--+.+|-|.|..++...|.|..|.|++ |.--.|.|+|++...+++|. .
T Consensus 104 Stsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk---kngVQAmVEFdsv~~AqrAk---~ 177 (494)
T KOG1456|consen 104 STSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK---KNGVQAMVEFDSVEVAQRAK---A 177 (494)
T ss_pred chhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe---ccceeeEEeechhHHHHHHH---h
Confidence 655554443322 233444444 4445799999999999999999999996 35567999997666555554 4
Q ss_pred HHhhcc------ccceeccC
Q psy10362 352 VLRRSS------TTKVQAPF 365 (388)
Q Consensus 352 aL~~~~------~~~i~~~~ 365 (388)
+|++.. +++|+.++
T Consensus 178 alNGADIYsGCCTLKIeyAk 197 (494)
T KOG1456|consen 178 ALNGADIYSGCCTLKIEYAK 197 (494)
T ss_pred hcccccccccceeEEEEecC
Confidence 444333 66776544
No 80
>KOG4212|consensus
Probab=98.98 E-value=5.6e-09 Score=102.82 Aligned_cols=64 Identities=22% Similarity=0.276 Sum_probs=58.9
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN 261 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~ 261 (388)
.+...+|||.||.+.+..+.|++.|.-.|.|+.|.+-.||. +.++||+.++|+.+-+|..||..
T Consensus 212 pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsm 275 (608)
T KOG4212|consen 212 PPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISM 275 (608)
T ss_pred CCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHh
Confidence 35567899999999999999999999999999999999974 69999999999999999999987
No 81
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.97 E-value=1.2e-09 Score=102.85 Aligned_cols=74 Identities=18% Similarity=0.221 Sum_probs=59.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhhccccceecc
Q psy10362 290 FPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRRSSTTKVQAP 364 (388)
Q Consensus 290 ~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~~~~i~~~ 364 (388)
.++|||+||++.+|+++|+++|+.||.|++|+|+.|+. +++||||+|.+...++.|..++......+.++|...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEec
Confidence 46999999999999999999999999999999998864 579999999877766666654444444445555443
No 82
>KOG0125|consensus
Probab=98.95 E-value=2.4e-09 Score=102.23 Aligned_cols=61 Identities=21% Similarity=0.397 Sum_probs=54.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 286 KNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 286 ~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
.....++|+|+|||....|.||+..|.+||.|.+|.|+.+..-+|||+||+|++.+++++|
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRA 152 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRA 152 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHH
Confidence 3455689999999999999999999999999999999998778999999999877655555
No 83
>KOG1365|consensus
Probab=98.94 E-value=8.9e-10 Score=106.82 Aligned_cols=142 Identities=15% Similarity=0.161 Sum_probs=101.0
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccC----ceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYG----EVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPC 276 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G----~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a 276 (388)
--|-+.+||+++++.|+.+||..-- ..+.|..++ +.+++..|-|||.|..+++|+.||.++...|.-|.|++..+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~-rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT-RPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE-CCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3456689999999999999996332 233444444 35789999999999999999999998766666666655433
Q ss_pred CCCCC--------------------------CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCC-CeeE--EEEecC-C
Q psy10362 277 NPRTL--------------------------QKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYG-KVME--VVIMSP-R 326 (388)
Q Consensus 277 ~~~~~--------------------------~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G-~I~~--v~v~~d-~ 326 (388)
...+. .......+...|.+.+||++.+.|+|.++|..|- .|.. |.++.+ .
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q 320 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ 320 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC
Confidence 22110 0000112245799999999999999999999884 4554 666655 4
Q ss_pred CCCeeEEEEEcCChhhH
Q psy10362 327 TIRAGITRVPTQELPVQ 343 (388)
Q Consensus 327 ~~~rG~aFV~F~~~~~~ 343 (388)
.++.|.|||+|.+.+.+
T Consensus 321 GrPSGeAFIqm~nae~a 337 (508)
T KOG1365|consen 321 GRPSGEAFIQMRNAERA 337 (508)
T ss_pred CCcChhhhhhhhhhHHH
Confidence 58999999999554433
No 84
>KOG0415|consensus
Probab=98.93 E-value=5.2e-10 Score=107.47 Aligned_cols=82 Identities=20% Similarity=0.292 Sum_probs=76.4
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
.++...|||-.|.+.++++||.-+|+.||.|.+|.|++|+.|+.+..||||+|++.+++++|.-+ ++..|..|+|.|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 46678899999999999999999999999999999999999999999999999999999999877 88899999999987
Q ss_pred CCC
Q psy10362 276 CNP 278 (388)
Q Consensus 276 a~~ 278 (388)
+..
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 653
No 85
>KOG0132|consensus
Probab=98.92 E-value=8.5e-10 Score=114.98 Aligned_cols=107 Identities=13% Similarity=0.135 Sum_probs=84.5
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCNP 278 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~~ 278 (388)
++||||+.|+..++|+||.++|+.||+|.+|+++.. |+||||+....++|++|+++ .++.+..+.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 579999999999999999999999999999999875 46999999999999999998 78899999999999876
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhh
Q psy10362 279 RTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFN 312 (388)
Q Consensus 279 ~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~ 312 (388)
.-....-+..-+..|=|.-||.+.-.++|+.+++
T Consensus 495 ~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 495 KGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred CCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 5444322223334455666777643344555444
No 86
>KOG1456|consensus
Probab=98.91 E-value=9.9e-08 Score=92.58 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=116.6
Q ss_pred CCCCCCCcccCCCc-CcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYG-TYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 198 ~~~~~vfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
.+.+.+.|.+|... +.-+.|.++|..||.|++|++++.|. |-|.|+..|..++++||.. ++..+.|.+|.|..
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 44577899999887 56677999999999999999999864 5899999999999999997 78888999998877
Q ss_pred CCCCCCCCCC--------------------------------CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCC-eeEEEE
Q psy10362 276 CNPRTLQKPK--------------------------------KNSSFPKVFLGGLPSNVTETDLRTFFNRYGK-VMEVVI 322 (388)
Q Consensus 276 a~~~~~~~~~--------------------------------~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~-I~~v~v 322 (388)
++........ -..+.+.|+.-|.|..+|||.|.++|..... ...|+|
T Consensus 360 SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkv 439 (494)
T KOG1456|consen 360 SKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKV 439 (494)
T ss_pred ccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEe
Confidence 6544321110 0122367999999999999999999996643 577888
Q ss_pred ecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhhcccccee
Q psy10362 323 MSPRTIRAGITRVPTQELPVQKEATAVQQVLRRSSTTKVQ 362 (388)
Q Consensus 323 ~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~~~~i~ 362 (388)
+..+.....-++++| +..++|.++|-..+-..|+
T Consensus 440 Fp~kserSssGllEf------e~~s~Aveal~~~NH~pi~ 473 (494)
T KOG1456|consen 440 FPLKSERSSSGLLEF------ENKSDAVEALMKLNHYPIE 473 (494)
T ss_pred ecccccccccceeee------ehHHHHHHHHHHhcccccc
Confidence 887776677789999 3344455555544433343
No 87
>KOG0113|consensus
Probab=98.89 E-value=2.2e-09 Score=101.26 Aligned_cols=67 Identities=15% Similarity=0.359 Sum_probs=55.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC--CCCeeEEEEEcCChhhHHHHHHHHHHHhhccccc
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR--TIRAGITRVPTQELPVQKEATAVQQVLRRSSTTK 360 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~--~~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~~~~ 360 (388)
.+.+||||+-|+.+++|.+|++.|++||.|+.|+||+|. .+++|||||+|+++ .++..|......++
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~e------rdm~~AYK~adG~~ 167 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHE------RDMKAAYKDADGIK 167 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccH------HHHHHHHHhccCce
Confidence 567899999999999999999999999999999999995 38999999999544 44444444444333
No 88
>KOG0107|consensus
Probab=98.85 E-value=4.5e-09 Score=92.36 Aligned_cols=73 Identities=23% Similarity=0.378 Sum_probs=59.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhhcc----ccceeccC
Q psy10362 290 FPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRRSS----TTKVQAPF 365 (388)
Q Consensus 290 ~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~----~~~i~~~~ 365 (388)
.++|||+||+..+++.||..+|.+||.|..|.|.. ++-+||||+|++. ..|++|..+|.... .++|+..+
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr---nPPGfAFVEFed~---RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR---NPPGFAFVEFEDP---RDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEee---cCCCceEEeccCc---ccHHHHHhhcCCccccCceEEEEeec
Confidence 57999999999999999999999999999999987 6889999999776 45566667777665 35566555
Q ss_pred CCc
Q psy10362 366 GAT 368 (388)
Q Consensus 366 ~~~ 368 (388)
.+.
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 443
No 89
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.84 E-value=1.2e-08 Score=77.15 Aligned_cols=53 Identities=32% Similarity=0.550 Sum_probs=43.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChhhHHH
Q psy10362 293 VFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELPVQKE 345 (388)
Q Consensus 293 lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~~~~ 345 (388)
|||+|||+++++++|+++|+.||.|..+++..++. ..+++|||+|.+.+++.+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~ 54 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKR 54 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHH
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHH
Confidence 79999999999999999999999999999998754 679999999955543333
No 90
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.83 E-value=2.4e-09 Score=77.85 Aligned_cols=54 Identities=30% Similarity=0.560 Sum_probs=47.7
Q ss_pred HHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 217 QQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 217 L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
|+++|++||+|.++++..++ +++|||+|.+.++|+.|++. ++..+.+++|+|.+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 78999999999999998764 46999999999999999997 88999999998865
No 91
>KOG0131|consensus
Probab=98.83 E-value=2.1e-09 Score=95.02 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=74.1
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEE-EEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDC-VVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCN 277 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v-~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~ 277 (388)
..+|||+||.++++|..|.++|+.||.|.+. +|++|..|+.+++|+||.|++.+.+.+||.. ++..+..|+|.|..+.
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 3689999999999999999999999988664 8999999999999999999999999999998 8888999999998887
Q ss_pred CCC
Q psy10362 278 PRT 280 (388)
Q Consensus 278 ~~~ 280 (388)
.+.
T Consensus 176 k~~ 178 (203)
T KOG0131|consen 176 KKD 178 (203)
T ss_pred ecC
Confidence 654
No 92
>KOG4208|consensus
Probab=98.83 E-value=4.9e-09 Score=94.45 Aligned_cols=82 Identities=21% Similarity=0.337 Sum_probs=73.3
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhcc-CceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRY-GEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~-G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
....-+||..||.-+.+.+|..+|.++ |.|+.+++-+++.||.|||||||+|++++.|+.|-+. |+..|.++.|.|..
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 334568999999999999999999998 7888889989999999999999999999999999987 88889999988887
Q ss_pred CCCC
Q psy10362 276 CNPR 279 (388)
Q Consensus 276 a~~~ 279 (388)
..+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 6554
No 93
>KOG0109|consensus
Probab=98.82 E-value=5.1e-09 Score=98.54 Aligned_cols=77 Identities=19% Similarity=0.338 Sum_probs=70.8
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
..+.+|+|+||.+.++.+||+..|++||+|.+|+|++| |+||.|+-.++|..||+. ++.+|.|++|+|..+
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 35678999999999999999999999999999999998 999999999999999997 899999999999988
Q ss_pred CCCCCC
Q psy10362 277 NPRTLQ 282 (388)
Q Consensus 277 ~~~~~~ 282 (388)
..+...
T Consensus 148 tsrlrt 153 (346)
T KOG0109|consen 148 TSRLRT 153 (346)
T ss_pred cccccc
Confidence 766543
No 94
>KOG4211|consensus
Probab=98.81 E-value=8.4e-09 Score=103.15 Aligned_cols=149 Identities=17% Similarity=0.233 Sum_probs=108.6
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeE-EEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVID-CVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNP 278 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~-v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~~ 278 (388)
...|-+.+||+.|||+||++||+-.-.|.+ |.++.| ..+++.|-|||+|++.++|+.||..+...|.-|-|+|..+..
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSR 181 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHH
Confidence 356788999999999999999998866655 345555 467799999999999999999999877777777776554321
Q ss_pred CCCCCCC-------------------------------------------------------C---------------C-
Q psy10362 279 RTLQKPK-------------------------------------------------------K---------------N- 287 (388)
Q Consensus 279 ~~~~~~~-------------------------------------------------------~---------------~- 287 (388)
.+..... + .
T Consensus 182 ~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~ 261 (510)
T KOG4211|consen 182 AEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPV 261 (510)
T ss_pred HHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCC
Confidence 1100000 0 0
Q ss_pred ----------------CC-CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChhhHHHHHHH
Q psy10362 288 ----------------SS-FPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELPVQKEATAV 349 (388)
Q Consensus 288 ----------------~~-~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~~~~a~~a 349 (388)
.. ...|+...||.+.++.+|.++|+..-.+ .|.|...++ +..+.++|+| ...+++
T Consensus 262 ~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF------~t~eda 334 (510)
T KOG4211|consen 262 SSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEF------ATGEDA 334 (510)
T ss_pred CCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeec------ccchhh
Confidence 00 0347889999999999999999977444 666666654 8999999999 555666
Q ss_pred HHHHhhc
Q psy10362 350 QQVLRRS 356 (388)
Q Consensus 350 ~~aL~~~ 356 (388)
..++.+.
T Consensus 335 v~Amskd 341 (510)
T KOG4211|consen 335 VGAMGKD 341 (510)
T ss_pred HhhhccC
Confidence 6666654
No 95
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.81 E-value=8.3e-09 Score=95.89 Aligned_cols=73 Identities=16% Similarity=0.127 Sum_probs=59.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhhccccceec
Q psy10362 290 FPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRRSSTTKVQA 363 (388)
Q Consensus 290 ~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~~~~i~~ 363 (388)
-.+|||+||++.+|+++|+++|+.||.|++|+|++|. +.++|+||+|.+...++.|..+..+....+.+.|..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~-et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~ 77 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG-EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITR 77 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC-CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEe
Confidence 3689999999999999999999999999999999984 456899999988877777766655555555555544
No 96
>KOG0128|consensus
Probab=98.80 E-value=7.1e-10 Score=116.77 Aligned_cols=143 Identities=19% Similarity=0.208 Sum_probs=115.7
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPR 279 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~~~ 279 (388)
..++||.||++.+.+.||...|..++.|..++|..-+.+++.||+|+|+|.+++++.+||..+...+.+
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g----------- 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG----------- 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh-----------
Confidence 347899999999999999999999998888877755678899999999999999999999864433333
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChhhHHHHHHHHH-HHhhcc
Q psy10362 280 TLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELPVQKEATAVQQ-VLRRSS 357 (388)
Q Consensus 280 ~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~~~~a~~a~~-aL~~~~ 357 (388)
...|+|.|+|..-|+++|+.+|+++|.+++++++..+. ++++.++|.|.+..++..+..-.. +....+
T Consensus 736 ----------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~ 805 (881)
T KOG0128|consen 736 ----------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKREN 805 (881)
T ss_pred ----------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhc
Confidence 13689999999999999999999999999999888775 999999999988776666643333 333333
Q ss_pred ccceec
Q psy10362 358 TTKVQA 363 (388)
Q Consensus 358 ~~~i~~ 363 (388)
...++.
T Consensus 806 ~~~v~v 811 (881)
T KOG0128|consen 806 NGEVQV 811 (881)
T ss_pred Cccccc
Confidence 444444
No 97
>KOG0121|consensus
Probab=98.79 E-value=8.1e-09 Score=86.42 Aligned_cols=67 Identities=16% Similarity=0.268 Sum_probs=55.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHHHHHHHHHhhcc
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEATAVQQVLRRSS 357 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~ 357 (388)
...++|||+||+..+|||+|.++|+++|.|..|.+=.|+. ++.|||||+| -+.+.|+.|.+.|+.++
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVey---y~~~dA~~Alryisgtr 102 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEY---YSRDDAEDALRYISGTR 102 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEE---ecchhHHHHHHHhccCc
Confidence 3457999999999999999999999999999999888875 6899999999 33355566666666544
No 98
>KOG0226|consensus
Probab=98.79 E-value=2.7e-08 Score=92.12 Aligned_cols=148 Identities=11% Similarity=0.137 Sum_probs=108.4
Q ss_pred CCCCCCCcccCCCcCcHHH-H--HHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQY-Q--QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDP 273 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~-L--~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v 273 (388)
+..-.+|++++-..+..+- | ...|+.+-.+...++++++ -+..++++|+.|.....-.++-.. +...+.-+.+++
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~ 172 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL 172 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceee
Confidence 5556788888888877665 3 6788888888888888885 456778999999877666655544 333333333333
Q ss_pred CCCC-CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 274 KPCN-PRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 274 ~~a~-~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
.... +......+.+..+.+||.+.|..+|++|.|...|++|.+....+|++|+. ++++|+||.|.+.+....|
T Consensus 173 a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rA 248 (290)
T KOG0226|consen 173 AAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRA 248 (290)
T ss_pred ccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHH
Confidence 3222 22223334456678999999999999999999999999999999999963 8999999999776655544
No 99
>KOG0120|consensus
Probab=98.77 E-value=3.2e-08 Score=100.99 Aligned_cols=152 Identities=14% Similarity=0.237 Sum_probs=119.3
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhcc-----------C-ceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRY-----------G-EVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHT 265 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~-----------G-~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~ 265 (388)
...+++||+++++.++|+.+..+|..- | .+..+.|-.+++ |+|++|.+.++|..|+..+...
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~n------fa~ie~~s~~~at~~~~~~~~~ 246 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKN------FAFIEFRSISEATEAMALDGII 246 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccccc------ceeEEecCCCchhhhhcccchh
Confidence 446789999999999999999998643 2 366777766654 9999999999999999988888
Q ss_pred CCCCCCCCCCCCCCCCC------------------CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC
Q psy10362 266 LDGRTIDPKPCNPRTLQ------------------KPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT 327 (388)
Q Consensus 266 l~Gr~i~v~~a~~~~~~------------------~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~ 327 (388)
+.|+.+++......... .........++||++||..+++++++|+...||.+...+++.|..
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~ 326 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA 326 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccc
Confidence 88888876543222110 111223346899999999999999999999999999999999976
Q ss_pred --CCeeEEEEEcCChhhHHHHHHHHHHHhh
Q psy10362 328 --IRAGITRVPTQELPVQKEATAVQQVLRR 355 (388)
Q Consensus 328 --~~rG~aFV~F~~~~~~~~a~~a~~aL~~ 355 (388)
.+++|+|.+|.+..+...|.+.+..++.
T Consensus 327 ~g~skg~af~ey~dpsvtd~A~agLnGm~l 356 (500)
T KOG0120|consen 327 TGNSKGFAFCEYCDPSVTDQAIAGLNGMQL 356 (500)
T ss_pred cccccceeeeeeeCCcchhhhhcccchhhh
Confidence 7999999999888777766655444443
No 100
>KOG0153|consensus
Probab=98.75 E-value=7.8e-09 Score=99.41 Aligned_cols=81 Identities=19% Similarity=0.196 Sum_probs=72.7
Q ss_pred CCCCCCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh--CCCCCCCC
Q psy10362 192 GPNPSGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN--CPHTLDGR 269 (388)
Q Consensus 192 ~~~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~--~~~~l~Gr 269 (388)
-.++.+...++|||++|-..++|.||+++|.+||+|+++.++..+ ++|||+|.+.++|+.|.++ +...++|+
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecce
Confidence 445667778899999999999999999999999999999998864 4999999999999999986 66789999
Q ss_pred CCCCCCCCC
Q psy10362 270 TIDPKPCNP 278 (388)
Q Consensus 270 ~i~v~~a~~ 278 (388)
+|.|.|..+
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999877
No 101
>smart00362 RRM_2 RNA recognition motif.
Probab=98.75 E-value=3.3e-08 Score=73.15 Aligned_cols=50 Identities=30% Similarity=0.538 Sum_probs=45.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChh
Q psy10362 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELP 341 (388)
Q Consensus 292 ~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~ 341 (388)
+|||.+||..+++++|+++|++||.|..+++..++.++++++||+|.+..
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~ 50 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEE 50 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHH
Confidence 58999999999999999999999999999999877678899999995543
No 102
>KOG0122|consensus
Probab=98.73 E-value=1.8e-08 Score=92.80 Aligned_cols=68 Identities=15% Similarity=0.269 Sum_probs=56.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHHHHHHHHHhhcccccee
Q psy10362 289 SFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEATAVQQVLRRSSTTKVQ 362 (388)
Q Consensus 289 ~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~~~~i~ 362 (388)
...+|.|.||+.+.+|++|+++|.+||.|..|.|.+|+. .+||||||.| ...++|.+||...+....-
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF------~sRddA~rAI~~LnG~gyd 257 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTF------ESRDDAARAIADLNGYGYD 257 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEE------ecHHHHHHHHHHccCcccc
Confidence 457899999999999999999999999999999999986 7999999999 4455555556555544433
No 103
>PLN03213 repressor of silencing 3; Provisional
Probab=98.70 E-value=2.2e-08 Score=100.01 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=44.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCCh
Q psy10362 289 SFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQEL 340 (388)
Q Consensus 289 ~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~ 340 (388)
...+|||+||+++||+++|+++|+.||.|..|.|++. +.|+||||+|...
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TGRGFAFVEMssd 58 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KGRSFAYIDFSPS 58 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cCCceEEEEecCC
Confidence 3468999999999999999999999999999999954 4599999999654
No 104
>KOG0226|consensus
Probab=98.67 E-value=2e-08 Score=92.98 Aligned_cols=84 Identities=18% Similarity=0.311 Sum_probs=77.1
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
.++..+||-+.|..+++++.|...|++|-.....++++|+.|++++||+||.|.+.+++.+|+++ ++..+..|.|+++.
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 35567999999999999999999999999889999999999999999999999999999999998 78888889998888
Q ss_pred CCCCC
Q psy10362 276 CNPRT 280 (388)
Q Consensus 276 a~~~~ 280 (388)
..++.
T Consensus 267 S~wke 271 (290)
T KOG0226|consen 267 SEWKE 271 (290)
T ss_pred hhHHh
Confidence 77665
No 105
>KOG4661|consensus
Probab=98.66 E-value=3.1e-08 Score=100.31 Aligned_cols=81 Identities=23% Similarity=0.330 Sum_probs=74.8
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCNP 278 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~~ 278 (388)
.+.|||.+|+..+.-.||+.||++||.|+-.+|+.+-.+.-.+.|+||++.+.++|.++|.. +..+|.||.|.|..++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 57899999999999999999999999999999999977777899999999999999999997 88999999999998875
Q ss_pred CC
Q psy10362 279 RT 280 (388)
Q Consensus 279 ~~ 280 (388)
..
T Consensus 485 Ep 486 (940)
T KOG4661|consen 485 EP 486 (940)
T ss_pred Cc
Confidence 44
No 106
>KOG4210|consensus
Probab=98.65 E-value=5.4e-08 Score=94.07 Aligned_cols=150 Identities=17% Similarity=0.172 Sum_probs=115.5
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCC-CCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCP-HTLDGRTIDPKPCN 277 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~-~~l~Gr~i~v~~a~ 277 (388)
..+++||+++.+.+.+.++..+|..+|.+..+.+.....+..+++++.|.|...+.+..||.... ..+..+.+..-...
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46789999999999999999999999988888887777788899999999999999999999744 45555555444333
Q ss_pred CCCCCC-----CCCCCCCCeEE-EcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHHHHH
Q psy10362 278 PRTLQK-----PKKNSSFPKVF-LGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEATAV 349 (388)
Q Consensus 278 ~~~~~~-----~~~~~~~~~lf-V~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a~~a 349 (388)
.+.... ........++| |.+|+..+++++|+++|..++.|..+++..++. ..++|++|.| ......
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~------~~~~~~ 240 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDF------SAGNSK 240 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhh------hhchhH
Confidence 322111 11112223455 999999999999999999999999999998875 7899999999 444444
Q ss_pred HHHHh
Q psy10362 350 QQVLR 354 (388)
Q Consensus 350 ~~aL~ 354 (388)
..+|.
T Consensus 241 ~~~~~ 245 (285)
T KOG4210|consen 241 KLALN 245 (285)
T ss_pred HHHhh
Confidence 44444
No 107
>KOG0126|consensus
Probab=98.58 E-value=3.5e-09 Score=93.51 Aligned_cols=95 Identities=17% Similarity=0.360 Sum_probs=66.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhh
Q psy10362 265 TLDGRTIDPKPCNPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPV 342 (388)
Q Consensus 265 ~l~Gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~ 342 (388)
.|+.+.|.+-.+...+... ......=|||++||.++||.+|.-+|++||+|++|.+++|+. +++||||+.|+|..+
T Consensus 12 ~lne~Elq~g~~~~~SWH~--~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRS 89 (219)
T KOG0126|consen 12 KLNERELQLGIADKKSWHQ--EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRS 89 (219)
T ss_pred HhhHHhhccccccccchhh--hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccc
Confidence 3555666555554322221 223345699999999999999999999999999999999975 899999999977755
Q ss_pred HHHH-HHHHHHHhhccccce
Q psy10362 343 QKEA-TAVQQVLRRSSTTKV 361 (388)
Q Consensus 343 ~~~a-~~a~~aL~~~~~~~i 361 (388)
...| ...+.+....++++|
T Consensus 90 TILAVDN~NGiki~gRtirV 109 (219)
T KOG0126|consen 90 TILAVDNLNGIKILGRTIRV 109 (219)
T ss_pred eEEEEeccCCceecceeEEe
Confidence 5544 233333333334443
No 108
>KOG4207|consensus
Probab=98.57 E-value=9.1e-08 Score=86.28 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=60.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHHHHHH-HHHhhccccceecc
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEATAVQ-QVLRRSSTTKVQAP 364 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a~~a~-~aL~~~~~~~i~~~ 364 (388)
.....|.|-||...+|.++|+.+|++||.|-+|.|..|+. .++||+||.|.+...++.|.+++ .++.....++||.+
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 4457899999999999999999999999999999999975 69999999997776555553333 33334445556554
Q ss_pred C
Q psy10362 365 F 365 (388)
Q Consensus 365 ~ 365 (388)
.
T Consensus 91 r 91 (256)
T KOG4207|consen 91 R 91 (256)
T ss_pred h
Confidence 3
No 109
>KOG1365|consensus
Probab=98.56 E-value=4e-07 Score=88.68 Aligned_cols=146 Identities=18% Similarity=0.164 Sum_probs=104.9
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPRT 280 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~~~~ 280 (388)
..|-...|||..++.+|..+|+-.-...-.+.+.....++..|.+.|.|.|++.-+.|++.+.+.+..|.|.|-.+...+
T Consensus 61 vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge~ 140 (508)
T KOG1365|consen 61 VVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGEE 140 (508)
T ss_pred eEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCchh
Confidence 34456799999999999999985532222233444456777789999999999999999998889999999887666543
Q ss_pred CC---------CCC--CCCCCCeEEEcCCCCCCCHHHHHHHhhcCC----CeeEEEEecC-CCCCeeEEEEEcCChhhHH
Q psy10362 281 LQ---------KPK--KNSSFPKVFLGGLPSNVTETDLRTFFNRYG----KVMEVVIMSP-RTIRAGITRVPTQELPVQK 344 (388)
Q Consensus 281 ~~---------~~~--~~~~~~~lfV~nLp~~vtee~L~~~F~~~G----~I~~v~v~~d-~~~~rG~aFV~F~~~~~~~ 344 (388)
.. ... ...+.-.|.+.+||.+.|+.++.++|...- .++.|-+++. .++..|-|||.|..+..+.
T Consensus 141 f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq 220 (508)
T KOG1365|consen 141 FLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQ 220 (508)
T ss_pred heEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHH
Confidence 21 111 112335688899999999999999997432 3445555544 4589999999996655444
Q ss_pred HH
Q psy10362 345 EA 346 (388)
Q Consensus 345 ~a 346 (388)
.|
T Consensus 221 ~a 222 (508)
T KOG1365|consen 221 FA 222 (508)
T ss_pred HH
Confidence 44
No 110
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.53 E-value=3.8e-07 Score=84.66 Aligned_cols=74 Identities=27% Similarity=0.386 Sum_probs=57.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC--CCCeeEEEEEcCChhhHHHHHHHHH-HHhhccccceec
Q psy10362 290 FPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR--TIRAGITRVPTQELPVQKEATAVQQ-VLRRSSTTKVQA 363 (388)
Q Consensus 290 ~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~--~~~rG~aFV~F~~~~~~~~a~~a~~-aL~~~~~~~i~~ 363 (388)
..+|||+||+.++|+++|+++|.+||.|..|+|..|+ .+.++|+||+|.+...+..|..... .....+.+++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeec
Confidence 5899999999999999999999999999999999996 4899999999966655544433333 333333444444
No 111
>KOG0116|consensus
Probab=98.52 E-value=7.3e-08 Score=97.17 Aligned_cols=80 Identities=18% Similarity=0.295 Sum_probs=68.1
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPR 279 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~~~ 279 (388)
..+|||.|||.++++++|+++|++||+|++..|......+++..|+||+|.+.++++.||.++...|.+++|.|+.-...
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 34599999999999999999999999999987766432344448999999999999999999888999999988765443
No 112
>KOG1995|consensus
Probab=98.52 E-value=7.8e-07 Score=86.34 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=75.7
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCcee--------EEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVI--------DCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLD 267 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~--------~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~ 267 (388)
.....+|||-.|+..+++++|.++|.+++.|. .|+|.+|++|+++|+-|.|+|+|...|+.||.. +...+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45567899999999999999999999999885 488999999999999999999999999999997 888999
Q ss_pred CCCCCCCCCCCCC
Q psy10362 268 GRTIDPKPCNPRT 280 (388)
Q Consensus 268 Gr~i~v~~a~~~~ 280 (388)
+.+|+|..|..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999988876554
No 113
>KOG0533|consensus
Probab=98.52 E-value=1.6e-07 Score=88.22 Aligned_cols=81 Identities=21% Similarity=0.322 Sum_probs=72.4
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
..+.+|+|.||++.|+++||++||..|+.+..+.|..|+ +|++.|.|-|.|...++|++|++. ++..|+|+.|++...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 334689999999999999999999999999999999984 799999999999999999999997 788999999887765
Q ss_pred CCC
Q psy10362 277 NPR 279 (388)
Q Consensus 277 ~~~ 279 (388)
...
T Consensus 160 ~~~ 162 (243)
T KOG0533|consen 160 SSP 162 (243)
T ss_pred cCc
Confidence 443
No 114
>smart00360 RRM RNA recognition motif.
Probab=98.51 E-value=3.1e-07 Score=67.53 Aligned_cols=46 Identities=30% Similarity=0.596 Sum_probs=41.0
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCCh
Q psy10362 295 LGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQEL 340 (388)
Q Consensus 295 V~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~ 340 (388)
|.+||..+++++|+++|+.||.|..++|..++. +++++|||+|.+.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~ 48 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESE 48 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCH
Confidence 578999999999999999999999999998753 6899999999444
No 115
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.49 E-value=4.6e-07 Score=67.27 Aligned_cols=49 Identities=37% Similarity=0.661 Sum_probs=44.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCCh
Q psy10362 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQEL 340 (388)
Q Consensus 292 ~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~ 340 (388)
+|+|.+||..+++++|+++|+.||.|..+.+..++. +.++++||+|.+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~ 50 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDE 50 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCH
Confidence 489999999999999999999999999999998764 6799999999444
No 116
>KOG0111|consensus
Probab=98.46 E-value=5.9e-08 Score=88.14 Aligned_cols=73 Identities=19% Similarity=0.259 Sum_probs=56.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHHHHHHHHHhhccccceeccCCC
Q psy10362 290 FPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEATAVQQVLRRSSTTKVQAPFGA 367 (388)
Q Consensus 290 ~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~~~~i~~~~~~ 367 (388)
.++|||++|..+|||..|...|-+||.|++|.+..|-. ++|+|+||+| ..+++|-.||..++..++.-+..|
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVef------e~aEDAaaAiDNMnesEL~Grtir 83 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEF------EEAEDAAAAIDNMNESELFGRTIR 83 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEe------eccchhHHHhhcCchhhhcceeEE
Confidence 46999999999999999999999999999999998854 8999999999 444555555555544444333333
Q ss_pred c
Q psy10362 368 T 368 (388)
Q Consensus 368 ~ 368 (388)
.
T Consensus 84 V 84 (298)
T KOG0111|consen 84 V 84 (298)
T ss_pred E
Confidence 3
No 117
>KOG0112|consensus
Probab=98.44 E-value=2.7e-07 Score=98.13 Aligned_cols=145 Identities=12% Similarity=0.101 Sum_probs=108.0
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
...++||++||+..+++.+|+..|..+|.|.+|.|-.-+ -+.-.-|+||.|.+...+-+|+.. -...|..-.+++...
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 346899999999999999999999999999999886653 233334999999999999888875 222222223333332
Q ss_pred CCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHH-HHHHHHHh
Q psy10362 277 NPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEA-TAVQQVLR 354 (388)
Q Consensus 277 ~~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a-~~a~~aL~ 354 (388)
.. .....+.|+|+.|...+....|...|..||.|..|.+- +..-|++|.|+....+..| ..++.+-.
T Consensus 449 ~~-------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~----hgq~yayi~yes~~~aq~a~~~~rgap~ 516 (975)
T KOG0112|consen 449 QP-------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR----HGQPYAYIQYESPPAAQAATHDMRGAPL 516 (975)
T ss_pred cc-------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc----cCCcceeeecccCccchhhHHHHhcCcC
Confidence 22 33556789999999999999999999999999987666 6778999999766555554 34443333
No 118
>KOG4660|consensus
Probab=98.43 E-value=1.4e-07 Score=95.79 Aligned_cols=139 Identities=15% Similarity=0.080 Sum_probs=94.6
Q ss_pred CCCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCC
Q psy10362 195 PSGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDP 273 (388)
Q Consensus 195 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v 273 (388)
..+...++|+|-|||..|++++|+++|+.||+|+.|+. |-..++..||+|-|..+|++|+++ +..++.+++|+.
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 33556789999999999999999999999999998654 344568999999999999999998 778888888873
Q ss_pred CCCCCCCCCCCC-----------------CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEE
Q psy10362 274 KPCNPRTLQKPK-----------------KNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVP 336 (388)
Q Consensus 274 ~~a~~~~~~~~~-----------------~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~ 336 (388)
.....+...... ..-....+|+- |++.++...++..|..++.+.. +.... .+..-|++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~---~~hq~~~~ 219 (549)
T KOG4660|consen 145 PGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPL---LNHQRFVE 219 (549)
T ss_pred CCcccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccc---hhhhhhhh
Confidence 221111100000 00011234443 9999888777777888888776 33221 11155666
Q ss_pred cCChhhH
Q psy10362 337 TQELPVQ 343 (388)
Q Consensus 337 F~~~~~~ 343 (388)
|.+..++
T Consensus 220 ~~~~~s~ 226 (549)
T KOG4660|consen 220 FADNRSY 226 (549)
T ss_pred hccccch
Confidence 6444444
No 119
>KOG4676|consensus
Probab=98.39 E-value=6.6e-08 Score=94.26 Aligned_cols=146 Identities=15% Similarity=0.113 Sum_probs=106.1
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCC---CCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNET---GRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~t---g~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~ 277 (388)
..|.|.||.+.++.++++.||..+|+|.+++|+.+..+ ....-.|||.|.|...+..|....+..|-++.|.|.+.-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 36899999999999999999999999999999874222 234558999999999999998877777777776655432
Q ss_pred CCCCCCC------------------------C------CC---------------------CCCCeEEEcCCCCCCCHHH
Q psy10362 278 PRTLQKP------------------------K------KN---------------------SSFPKVFLGGLPSNVTETD 306 (388)
Q Consensus 278 ~~~~~~~------------------------~------~~---------------------~~~~~lfV~nLp~~vtee~ 306 (388)
...+... . .. .-.++|+|.+|...+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 2111000 0 00 0015799999999999999
Q ss_pred HHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHH
Q psy10362 307 LRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATA 348 (388)
Q Consensus 307 L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~ 348 (388)
+.++|..+|.|.+..+... ...-+|.++|....+.+.+..
T Consensus 168 ~~e~f~r~Gev~ya~~ask--~~s~~c~~sf~~qts~~halr 207 (479)
T KOG4676|consen 168 SGESFERKGEVSYAHTASK--SRSSSCSHSFRKQTSSKHALR 207 (479)
T ss_pred hhhhhhhcchhhhhhhhcc--CCCcchhhhHhhhhhHHHHHH
Confidence 9999999999998877643 344566688855444444443
No 120
>KOG0114|consensus
Probab=98.37 E-value=1.6e-06 Score=70.31 Aligned_cols=57 Identities=19% Similarity=0.368 Sum_probs=47.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 289 SFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 289 ~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
-++.|||.|||.++|.|++.++|.+||.|..|+|=..+ ..+|-|||.|+++..++.|
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k-~TrGTAFVVYedi~dAk~A 73 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK-ETRGTAFVVYEDIFDAKKA 73 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc-CcCceEEEEehHhhhHHHH
Confidence 34689999999999999999999999999999998654 5789999999665444444
No 121
>KOG0105|consensus
Probab=98.35 E-value=6.6e-07 Score=79.52 Aligned_cols=57 Identities=18% Similarity=0.443 Sum_probs=47.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 289 SFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 289 ~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
..++|||+|||.+|.+.||.++|.+||.|.+|.+... ...-.||||+|++.-.++.|
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r-~g~ppfafVeFEd~RDAeDA 61 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR-PGPPPFAFVEFEDPRDAEDA 61 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC-CCCCCeeEEEecCccchhhh
Confidence 4578999999999999999999999999999988643 35678999999766444433
No 122
>KOG4209|consensus
Probab=98.33 E-value=3.5e-07 Score=85.82 Aligned_cols=83 Identities=16% Similarity=0.141 Sum_probs=76.0
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPC 276 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a 276 (388)
..+.+.|||+|+.+.+|.++|...|+.||.|..+.|..|+.++.+|+|+||+|.+.+.++.|++.+...|.++.|.|.+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 45678899999999999999999999999999999999999999999999999999999999998888999999988765
Q ss_pred CCC
Q psy10362 277 NPR 279 (388)
Q Consensus 277 ~~~ 279 (388)
..+
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 544
No 123
>KOG4307|consensus
Probab=98.23 E-value=1.1e-06 Score=91.02 Aligned_cols=142 Identities=9% Similarity=-0.005 Sum_probs=106.8
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPC 276 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a 276 (388)
..+.+.+-+..++++.++.|+++||.-. .|.++.|..++..+...|.++|+|...++++.|++.+...+..|.+.+..+
T Consensus 308 v~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 308 VSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPP 386 (944)
T ss_pred cchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCC
Confidence 4556777778999999999999999644 456666666655555578999999999999999998888888888877654
Q ss_pred CCCCCCCCC----------------------------------CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE-EE
Q psy10362 277 NPRTLQKPK----------------------------------KNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVME-VV 321 (388)
Q Consensus 277 ~~~~~~~~~----------------------------------~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~-v~ 321 (388)
......... .......|||..||...++.++.++|+..-.|++ |.
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 432211000 0011147999999999999999999997767777 66
Q ss_pred EecCC-CCCeeEEEEEcCC
Q psy10362 322 IMSPR-TIRAGITRVPTQE 339 (388)
Q Consensus 322 v~~d~-~~~rG~aFV~F~~ 339 (388)
|.+.+ ++.+..+||+|..
T Consensus 467 lt~~P~~~~~~~afv~F~~ 485 (944)
T KOG4307|consen 467 LTRLPTDLLRPAAFVAFIH 485 (944)
T ss_pred eccCCcccccchhhheecc
Confidence 66654 3788999999954
No 124
>KOG0130|consensus
Probab=98.21 E-value=3.2e-06 Score=71.58 Aligned_cols=54 Identities=22% Similarity=0.371 Sum_probs=48.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEc
Q psy10362 284 PKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPT 337 (388)
Q Consensus 284 ~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F 337 (388)
+.++..-..|||.++....||++|.+.|..||+|+++.+-.|+. -.+||++|+|
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEY 121 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEY 121 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeeh
Confidence 34455567899999999999999999999999999999998864 5899999999
No 125
>KOG0151|consensus
Probab=98.12 E-value=4.5e-06 Score=86.97 Aligned_cols=86 Identities=14% Similarity=0.173 Sum_probs=73.1
Q ss_pred CCCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCC---CCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCC
Q psy10362 195 PSGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNE---TGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRT 270 (388)
Q Consensus 195 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~---tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~ 270 (388)
..++..+.|||+||++.++|+.|...|..||+|..|+|+..+. ..+-+-++||.|-+..+|++|++. ++..+..+.
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 3456667899999999999999999999999999999987542 234456899999999999999998 778889999
Q ss_pred CCCCCCCCCC
Q psy10362 271 IDPKPCNPRT 280 (388)
Q Consensus 271 i~v~~a~~~~ 280 (388)
+++.|.++..
T Consensus 249 ~K~gWgk~V~ 258 (877)
T KOG0151|consen 249 MKLGWGKAVP 258 (877)
T ss_pred eeeccccccc
Confidence 9998886544
No 126
>KOG0108|consensus
Probab=98.09 E-value=4.9e-06 Score=84.55 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=49.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 291 PKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
..|||+|||+++++|+|.++|+..|.|.+++++.|+. +.+||+|++|.+...+..|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a 76 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERA 76 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHH
Confidence 6899999999999999999999999999999999975 8999999999665444433
No 127
>KOG0153|consensus
Probab=98.05 E-value=9.6e-06 Score=78.46 Aligned_cols=53 Identities=28% Similarity=0.555 Sum_probs=45.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhh
Q psy10362 286 KNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPV 342 (388)
Q Consensus 286 ~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~ 342 (388)
.+...++|||++|-..++|.+|+++|.+||+|+.++|+ ..+++|||+|.+...
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~----~~~~CAFv~ftTR~a 276 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL----PRKGCAFVTFTTREA 276 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEee----cccccceeeehhhHH
Confidence 34556899999999999999999999999999999999 456799999954433
No 128
>KOG0132|consensus
Probab=98.05 E-value=7.3e-06 Score=86.22 Aligned_cols=63 Identities=25% Similarity=0.547 Sum_probs=50.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhhcccccee
Q psy10362 290 FPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRRSSTTKVQ 362 (388)
Q Consensus 290 ~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~~~~i~ 362 (388)
.+||||+.|+..|+++||+++|+.||+|++|.++ .++++|||.. ....+|.+||.+++..++.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li----~~R~cAfI~M------~~RqdA~kalqkl~n~kv~ 483 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI----PPRGCAFIKM------VRRQDAEKALQKLSNVKVA 483 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeec----cCCceeEEEE------eehhHHHHHHHHHhccccc
Confidence 3799999999999999999999999999999999 6789999998 3344444444444433333
No 129
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.98 E-value=1.5e-05 Score=64.72 Aligned_cols=61 Identities=10% Similarity=0.042 Sum_probs=53.6
Q ss_pred CCCCcccCCCcCcHHHHHHHHhcc--CceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRY--GEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN 261 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~--G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~ 261 (388)
.||.|.|||...|.++|.+++... |...-+.|..|-.+..+.|||||.|.+++.|.+..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~ 64 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKA 64 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHH
Confidence 579999999999999999988543 5667788888988999999999999999999998875
No 130
>KOG4206|consensus
Probab=97.97 E-value=2.4e-05 Score=71.76 Aligned_cols=74 Identities=16% Similarity=0.327 Sum_probs=57.9
Q ss_pred CCeEEEcCCCCCCCHHHHHH----HhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhhc----cccce
Q psy10362 290 FPKVFLGGLPSNVTETDLRT----FFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRRS----STTKV 361 (388)
Q Consensus 290 ~~~lfV~nLp~~vtee~L~~----~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~~----~~~~i 361 (388)
+.||||.||...+..++|++ +|+.||.|.+|+.++.. +.||-|||.|.+.. .|..|+.+|... ..++|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~-KmRGQA~VvFk~~~---~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP-KMRGQAFVVFKETE---AASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC-CccCceEEEecChh---HHHHHHHHhcCCcccCchhhe
Confidence 34999999999999999998 99999999999998643 78999999996654 344455555554 37777
Q ss_pred eccCCC
Q psy10362 362 QAPFGA 367 (388)
Q Consensus 362 ~~~~~~ 367 (388)
+.+++.
T Consensus 85 qyA~s~ 90 (221)
T KOG4206|consen 85 QYAKSD 90 (221)
T ss_pred ecccCc
Confidence 776543
No 131
>KOG0116|consensus
Probab=97.93 E-value=8.4e-06 Score=82.42 Aligned_cols=76 Identities=16% Similarity=0.196 Sum_probs=62.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC--CCCeeEEEEEcCChhhHHHHHHHHHHHhhccccceeccCC
Q psy10362 291 PKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR--TIRAGITRVPTQELPVQKEATAVQQVLRRSSTTKVQAPFG 366 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~--~~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~~~~i~~~~~ 366 (388)
.+|||.|||.++++++|+++|..||.|+...|..-. .+...|+||+|++.+.+..+..|......-+.+.|+.+..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 469999999999999999999999999998877643 3444999999988888888877776666666777766554
No 132
>KOG4660|consensus
Probab=97.92 E-value=3.9e-05 Score=78.36 Aligned_cols=66 Identities=23% Similarity=0.367 Sum_probs=51.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhhcc
Q psy10362 286 KNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRRSS 357 (388)
Q Consensus 286 ~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~ 357 (388)
.+.+..+|+|-|||.+|++++|+++|+.||+|+.|+.-. .+++.+||+|-|+ ..|+.|.++|+..+
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~---~~~~~~~v~FyDv---R~A~~Alk~l~~~~ 136 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP---NKRGIVFVEFYDV---RDAERALKALNRRE 136 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc---ccCceEEEEEeeh---HhHHHHHHHHHHHH
Confidence 345668999999999999999999999999999955443 5789999999665 44555555555543
No 133
>KOG0415|consensus
Probab=97.89 E-value=1.2e-05 Score=77.91 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=58.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHH-HHHHHHHhh
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEA-TAVQQVLRR 355 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a-~~a~~aL~~ 355 (388)
..+.+.|||-.|.+-.|+|+|.-+|+.||.|..|.|++|.. .+..||||+|++..+.+.| -.+..+|..
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID 307 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID 307 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec
Confidence 45568999999999999999999999999999999999975 6899999999887777766 345555544
No 134
>KOG4307|consensus
Probab=97.87 E-value=0.00034 Score=73.14 Aligned_cols=74 Identities=11% Similarity=0.199 Sum_probs=58.7
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDP 273 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v 273 (388)
.+.|-+.|+|++++-+||.+||.-|-.+-.-.+++-.+.|...|-|.|.|++.++|.+|... ++..|..|+|++
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l 941 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSL 941 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEE
Confidence 34678999999999999999999997665444444447899999999999999999999874 555555555544
No 135
>smart00361 RRM_1 RNA recognition motif.
Probab=97.85 E-value=2.5e-05 Score=59.38 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=30.0
Q ss_pred HHHHHHHhh----cCCCeeEEE-EecCC----CCCeeEEEEEcCCh
Q psy10362 304 ETDLRTFFN----RYGKVMEVV-IMSPR----TIRAGITRVPTQEL 340 (388)
Q Consensus 304 ee~L~~~F~----~~G~I~~v~-v~~d~----~~~rG~aFV~F~~~ 340 (388)
+++|+++|+ +||.|..|. |+.++ .+++||+||+|.+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~ 47 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERS 47 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCH
Confidence 578888888 999999995 66654 46899999999444
No 136
>KOG4454|consensus
Probab=97.72 E-value=1.9e-05 Score=72.10 Aligned_cols=66 Identities=18% Similarity=0.079 Sum_probs=56.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChhhHHHHHHHHHHHh
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELPVQKEATAVQQVLR 354 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~~~~a~~a~~aL~ 354 (388)
..+++|||.||...|+||.|.|+|-..|.|..|.|..+++ +.+ ||||.|.++.+...|.++..-+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~ 73 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDD 73 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccch
Confidence 3457999999999999999999999999999999998886 455 99999999988888765544433
No 137
>KOG4209|consensus
Probab=97.68 E-value=4.6e-05 Score=71.58 Aligned_cols=82 Identities=18% Similarity=0.198 Sum_probs=63.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHHHHHHHHHhhccccceec
Q psy10362 286 KNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEATAVQQVLRRSSTTKVQA 363 (388)
Q Consensus 286 ~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~~~~i~~ 363 (388)
.....+.|||+|+...+|.++|..+|+.||.|..+.|..|+. ++++|+||+|++......+..++..+...+.+++..
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTL 176 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeee
Confidence 345567899999999999999999999999999999999875 689999999977666555555555555555555555
Q ss_pred cCCC
Q psy10362 364 PFGA 367 (388)
Q Consensus 364 ~~~~ 367 (388)
+.-+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 4444
No 138
>KOG4208|consensus
Probab=97.67 E-value=0.00014 Score=65.98 Aligned_cols=72 Identities=18% Similarity=0.250 Sum_probs=57.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcC-CCeeEEEEecCCC--CCeeEEEEEcCChhhHHHH-HHHHHHHhhcccc
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRY-GKVMEVVIMSPRT--IRAGITRVPTQELPVQKEA-TAVQQVLRRSSTT 359 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~-G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a-~~a~~aL~~~~~~ 359 (388)
.....++|..|+.-+.+.+|..+|..| |.|..+++.+.+. ++++||||+|++.++++-| +.|+..|...+.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 344578999999999999999999988 7777788877753 8999999999998887776 5667766655433
No 139
>KOG2193|consensus
Probab=97.64 E-value=1.1e-05 Score=79.60 Aligned_cols=109 Identities=16% Similarity=0.195 Sum_probs=86.8
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCc-eeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhC--CCCCCCCCCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGE-VIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNC--PHTLDGRTIDPKPCN 277 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~-I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~--~~~l~Gr~i~v~~a~ 277 (388)
.++|++||.+.++.+||..+|...-. ...-.+++ .||+||.+.+...|.+|++.+ ..++.|+++.+....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 46999999999999999999975411 11122232 269999999999999999973 367889998887765
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEe
Q psy10362 278 PRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323 (388)
Q Consensus 278 ~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~ 323 (388)
+... ..+++-|.|+|+...++.|..+...||.|+.|.++
T Consensus 75 ~kkq-------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqv 113 (584)
T KOG2193|consen 75 PKKQ-------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQV 113 (584)
T ss_pred hHHH-------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhh
Confidence 5432 23568999999999999999999999999999775
No 140
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.63 E-value=7.3e-05 Score=72.14 Aligned_cols=112 Identities=14% Similarity=0.164 Sum_probs=72.5
Q ss_pred CCCCcccCCCcCcHHH----H--HHHHhccCceeEEEEeecCCCCC-ceeEE--EEEeCChHhHHHHHHh-CCCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQY----Q--QRYFSRYGEVIDCVVMKNNETGR-SRGFG--FVTFADPNNVGVVIQN-CPHTLDGRT 270 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~----L--~~~F~~~G~I~~v~i~~dk~tg~-skG~g--FV~F~~~~~A~~Ai~~-~~~~l~Gr~ 270 (388)
.-|||-+|++.+-+++ | .++|.+||.|.+|.|.+.-.+-. ..+.+ ||+|.+.++|.+||++ ++..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 3479999999887776 2 46899999998887765421111 12334 8999999999999998 999999999
Q ss_pred CCCCCCCCCCCCC---CCCCCCCCeEEEcC---CCCCCCHHHHHHHhh
Q psy10362 271 IDPKPCNPRTLQK---PKKNSSFPKVFLGG---LPSNVTETDLRTFFN 312 (388)
Q Consensus 271 i~v~~a~~~~~~~---~~~~~~~~~lfV~n---Lp~~vtee~L~~~F~ 312 (388)
|+..+...+.-.. ...-.+....|+-- --.+.|++||...-.
T Consensus 195 lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~qh 242 (480)
T COG5175 195 LKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNSQH 242 (480)
T ss_pred EeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhhhh
Confidence 9876644321100 00001122344421 123568888876544
No 141
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=97.54 E-value=0.00014 Score=52.49 Aligned_cols=31 Identities=23% Similarity=0.507 Sum_probs=25.7
Q ss_pred HHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCCh
Q psy10362 307 LRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQEL 340 (388)
Q Consensus 307 L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~ 340 (388)
|+++|++||.|+.+++..+. ++++||+|++.
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~ 31 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASV 31 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSH
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCH
Confidence 68899999999999998654 69999999544
No 142
>KOG4210|consensus
Probab=97.49 E-value=7.8e-05 Score=72.25 Aligned_cols=81 Identities=19% Similarity=0.352 Sum_probs=71.9
Q ss_pred CCCCC-cccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCCC
Q psy10362 200 AGKPP-ADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNP 278 (388)
Q Consensus 200 ~~~vf-VgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~~ 278 (388)
..++| |.+|+.++++++|+++|..++.|..+++..++.++.+++|+||.|.+...+..++....+.+.++.+.+....+
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEP 263 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCC
Confidence 34566 99999999999999999999999999999999999999999999999999999988655678888888887766
Q ss_pred CC
Q psy10362 279 RT 280 (388)
Q Consensus 279 ~~ 280 (388)
+.
T Consensus 264 ~~ 265 (285)
T KOG4210|consen 264 RP 265 (285)
T ss_pred Cc
Confidence 54
No 143
>KOG1457|consensus
Probab=97.48 E-value=0.00082 Score=61.78 Aligned_cols=67 Identities=15% Similarity=0.278 Sum_probs=52.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecC-CC--CCeeEEEEEcCChhhHHHHHHHHHHHhhcc
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSP-RT--IRAGITRVPTQELPVQKEATAVQQVLRRSS 357 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d-~~--~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~ 357 (388)
...+||||.+||.+|...||..+|+.|-..+.+-|... +. ..+-++||+| .+...|.+++++|++.+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF---~s~q~A~aamnaLNGvr 101 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATF---TSHQFALAAMNALNGVR 101 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEe---cchHHHHHHHHHhcCee
Confidence 44689999999999999999999999988777665543 32 3568999999 44566677777777654
No 144
>KOG0128|consensus
Probab=97.43 E-value=1.9e-05 Score=83.97 Aligned_cols=147 Identities=16% Similarity=0.092 Sum_probs=110.7
Q ss_pred CCCCCcccCCCcCcHH-HHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQ-YQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNP 278 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~-~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~~ 278 (388)
.+.+.+.++.+...+. .++..|+.++.|++|++......-...-+.++++....+++.|.......+..+.+.|..+.+
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~ 650 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADA 650 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCc
Confidence 4567788888887666 578899999999999887632221222278899999999999988777778888888888777
Q ss_pred CCCCCCCCCCC-----CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEe--cCCCCCeeEEEEEcCChhhHHHH
Q psy10362 279 RTLQKPKKNSS-----FPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM--SPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 279 ~~~~~~~~~~~-----~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~--~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
+......+..+ ..++||+||+..+.+++|...|..++.|+.+.|. .++.+-+|+++|.|.+.....++
T Consensus 651 ~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 651 EEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred hhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhh
Confidence 66433222222 2579999999999999999999999988887665 44457899999999665544444
No 145
>KOG0533|consensus
Probab=97.42 E-value=0.00032 Score=66.12 Aligned_cols=53 Identities=25% Similarity=0.416 Sum_probs=47.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCCh
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQEL 340 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~ 340 (388)
....+|+|.||+..|++++|+++|..|+.++.+-|.+|+. .+.+.|-|.|...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~ 134 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRR 134 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecch
Confidence 3446899999999999999999999999999999999976 8999999999544
No 146
>KOG4849|consensus
Probab=97.38 E-value=0.00012 Score=71.05 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=60.3
Q ss_pred CCCcccCCCcCcHHHHHHHHhccC--ceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCC
Q psy10362 202 KPPADYSAYGTYAQYQQRYFSRYG--EVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDP 273 (388)
Q Consensus 202 ~vfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v 273 (388)
-+||+||-|++|++||.+.+...| .|.++|++.++.+|+|||||+|...+.+++++.++. -..+|.|..-.|
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 479999999999999999887766 577889999999999999999999999999888885 445666654333
No 147
>KOG1548|consensus
Probab=97.36 E-value=0.00028 Score=68.45 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=49.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEEecCCC-CCeeEEEEEcCChhhHHHHH
Q psy10362 289 SFPKVFLGGLPSNVTETDLRTFFNRYGKVME--------VVIMSPRT-IRAGITRVPTQELPVQKEAT 347 (388)
Q Consensus 289 ~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~--------v~v~~d~~-~~rG~aFV~F~~~~~~~~a~ 347 (388)
.++.|||++||.+||.+++.++|++||.|.. |+|.++.. +.+|-+++.|-...++..|.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~ 200 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAI 200 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHH
Confidence 3467999999999999999999999999865 88888864 89999999996666665553
No 148
>KOG0115|consensus
Probab=97.36 E-value=0.00038 Score=65.11 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=62.7
Q ss_pred hHHHHHHh-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecC-CCCCee
Q psy10362 254 NVGVVIQN-CPHTLDGRTIDPKPCNPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSP-RTIRAG 331 (388)
Q Consensus 254 ~A~~Ai~~-~~~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d-~~~~rG 331 (388)
-|+.|..+ ++..+.++.|+|+++.. ..|+|.||...++.|.|.+.|+.||.|+..+++.| ..+..+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~ 73 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTR 73 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccc
Confidence 45556555 67778899999998854 37999999999999999999999999999776666 568999
Q ss_pred EEEEEcCChh
Q psy10362 332 ITRVPTQELP 341 (388)
Q Consensus 332 ~aFV~F~~~~ 341 (388)
-.+|+|....
T Consensus 74 eg~v~~~~k~ 83 (275)
T KOG0115|consen 74 EGIVEFAKKP 83 (275)
T ss_pred cchhhhhcch
Confidence 9999994443
No 149
>KOG0106|consensus
Probab=97.35 E-value=0.00013 Score=67.45 Aligned_cols=69 Identities=20% Similarity=0.224 Sum_probs=59.8
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPK 274 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~ 274 (388)
...++|+|.+|+..+.+++|.+.|..+|.+....+. +.++||+|.+.++|.+||.. ++..++++.|.+.
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 445789999999999999999999999998555542 34899999999999999998 8889999999883
No 150
>KOG4661|consensus
Probab=97.24 E-value=0.00089 Score=68.70 Aligned_cols=56 Identities=21% Similarity=0.364 Sum_probs=47.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 291 PKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
++|+|++|+......+|+.+|++||.|+-++||++.. --+.|+||++.+.+.+..+
T Consensus 406 RNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkC 463 (940)
T KOG4661|consen 406 RNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKC 463 (940)
T ss_pred cceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHH
Confidence 6899999999999999999999999999999998743 4789999999444433333
No 151
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.17 E-value=0.0005 Score=56.74 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=36.1
Q ss_pred CCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh
Q psy10362 202 KPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN 261 (388)
Q Consensus 202 ~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~ 261 (388)
.|+|.++...++.++|+++|+.|+.|..|.+.+... .|||.|.+.+.|++|++.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~ 56 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEK 56 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHH
Confidence 467888999999999999999999999988876532 799999999999999985
No 152
>KOG0151|consensus
Probab=97.13 E-value=0.00096 Score=70.08 Aligned_cols=53 Identities=28% Similarity=0.375 Sum_probs=46.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-----CCeeEEEEEcCCh
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-----IRAGITRVPTQEL 340 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-----~~rG~aFV~F~~~ 340 (388)
...++|||+||++.|+++.|...|.+||.|..|+|+..+. +.+-++||.|-+.
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR 229 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNR 229 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhh
Confidence 4458999999999999999999999999999999998764 5788999999444
No 153
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.09 E-value=0.0021 Score=52.17 Aligned_cols=66 Identities=15% Similarity=0.124 Sum_probs=47.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcC--CCeeEEEEecCCC--CCeeEEEEEcCChhhHHHHHHHHHHHhhcccccee
Q psy10362 291 PKVFLGGLPSNVTETDLRTFFNRY--GKVMEVVIMSPRT--IRAGITRVPTQELPVQKEATAVQQVLRRSSTTKVQ 362 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~~~F~~~--G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~~~~i~ 362 (388)
+||.|.|||...|.++|.+++... |....+.+..|.. .+.|||||.| ..++.+.+.....+..++.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf------~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNF------TSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEc------CCHHHHHHHHHHHcCCccc
Confidence 589999999999999999988844 5666667776743 5899999999 4444444444544444443
No 154
>KOG1855|consensus
Probab=97.05 E-value=0.0017 Score=64.75 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=48.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecC---CC-----C-------CeeEEEEEcCChhhHHHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSP---RT-----I-------RAGITRVPTQELPVQKEAT 347 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d---~~-----~-------~rG~aFV~F~~~~~~~~a~ 347 (388)
...++|.+.|||.+-..|.|.++|..+|.|+.|+|+.. +. . .+-+|||+|++.+.+..|.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 45689999999999999999999999999999999987 22 1 2677889996655444443
No 155
>KOG0129|consensus
Probab=97.03 E-value=0.00091 Score=68.11 Aligned_cols=64 Identities=14% Similarity=0.058 Sum_probs=59.9
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHh-ccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFS-RYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN 261 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~-~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~ 261 (388)
++.+|||||.||.-++-++|..+|+ -||.|..+-|-.|++-+.+||-+=|+|.+..+..+||++
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4578999999999999999999998 899999999999988889999999999999999999985
No 156
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.98 E-value=0.00089 Score=48.24 Aligned_cols=52 Identities=10% Similarity=0.170 Sum_probs=39.4
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHH
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVI 259 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai 259 (388)
+.|-|.+.+.+.. ++|..+|..||+|.++.+-.+.+ ..+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~------~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTN------WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCc------EEEEEECCHHHHHhhC
Confidence 3455667665555 45566999999999988763322 8999999999999985
No 157
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.91 E-value=0.0012 Score=51.73 Aligned_cols=66 Identities=9% Similarity=0.032 Sum_probs=44.3
Q ss_pred CCCcccCCCcCcHHH----HHHHHhccC-ceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 202 KPPADYSAYGTYAQY----QQRYFSRYG-EVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 202 ~vfVgnLp~~~te~~----L~~~F~~~G-~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
.|||.|||.+.+-.. |++|+..+| .|.+|. .+.|+|.|.+++.|++|++. ++..+.|++|.|.+
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 489999999887754 666777886 554441 13799999999999999997 88889999999988
Q ss_pred CC
Q psy10362 276 CN 277 (388)
Q Consensus 276 a~ 277 (388)
..
T Consensus 74 ~~ 75 (90)
T PF11608_consen 74 SP 75 (90)
T ss_dssp S-
T ss_pred cC
Confidence 64
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.68 E-value=0.005 Score=50.82 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=32.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHH
Q psy10362 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAV 349 (388)
Q Consensus 292 ~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a 349 (388)
.|+|.++...++.++|+++|+.|+.|.+|.+.. ....++|.|.+...++.+.++
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~----G~~~g~VRf~~~~~A~~a~~~ 56 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR----GDTEGYVRFKTPEAAQKALEK 56 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--T----T-SEEEEEESS---HHHHHHH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecC----CCCEEEEEECCcchHHHHHHH
Confidence 588889999999999999999999999999885 345799999776554444333
No 159
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.50 E-value=0.0033 Score=51.39 Aligned_cols=75 Identities=16% Similarity=0.268 Sum_probs=48.3
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCceeEEE-EeecC------CCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCC-C
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEVIDCV-VMKNN------ETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTI-D 272 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~-i~~dk------~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i-~ 272 (388)
+-|.|-+.|.. ..+.|.+.|++||.|++.. +.++. ..-.....-.|+|+++.+|++||++|+..|.+..| -
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mvG 85 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMVG 85 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEEE
Confidence 44667777777 5677889999999998775 11110 00011237889999999999999999998988644 3
Q ss_pred CCCC
Q psy10362 273 PKPC 276 (388)
Q Consensus 273 v~~a 276 (388)
|+++
T Consensus 86 V~~~ 89 (100)
T PF05172_consen 86 VKPC 89 (100)
T ss_dssp EEE-
T ss_pred EEEc
Confidence 5444
No 160
>KOG0115|consensus
Probab=96.40 E-value=0.0083 Score=56.34 Aligned_cols=73 Identities=21% Similarity=0.330 Sum_probs=59.7
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCC-----CCCCCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCP-----HTLDGRTIDPK 274 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~-----~~l~Gr~i~v~ 274 (388)
..|||.||..-++.+.|.+-|+.||+|....++.| ..++..+-++|.|...-.|..|++.+. .+..++..-|.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 56999999999999999999999999998888777 467788899999999999999988642 23444544443
No 161
>KOG1855|consensus
Probab=96.26 E-value=0.0024 Score=63.74 Aligned_cols=71 Identities=10% Similarity=0.059 Sum_probs=57.5
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeec---CCCC--Cc--------eeEEEEEeCChHhHHHHHHhCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKN---NETG--RS--------RGFGFVTFADPNNVGVVIQNCPHT 265 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d---k~tg--~s--------kG~gFV~F~~~~~A~~Ai~~~~~~ 265 (388)
.+++|.+-|||.+-..+.|.++|..+|.|..|+|.+. +.+. .+ +-+|||+|+..+.|.+|.+.++.+
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 5789999999999988999999999999999999875 3222 12 447999999999999999875544
Q ss_pred CCCC
Q psy10362 266 LDGR 269 (388)
Q Consensus 266 l~Gr 269 (388)
-++|
T Consensus 310 ~~wr 313 (484)
T KOG1855|consen 310 QNWR 313 (484)
T ss_pred hhhh
Confidence 4444
No 162
>KOG2314|consensus
Probab=95.59 E-value=0.018 Score=59.42 Aligned_cols=60 Identities=17% Similarity=0.264 Sum_probs=47.9
Q ss_pred CCCCcccCCCcCcH------HHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh
Q psy10362 201 GKPPADYSAYGTYA------QYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN 261 (388)
Q Consensus 201 ~~vfVgnLp~~~te------~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~ 261 (388)
..|+|-|+|---.. .-|..+|+++|+|.++.+..+..+ .++||.|++|.+..+|+.|++.
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~g-gtkG~lf~E~~~~~~A~~aVK~ 124 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEG-GTKGYLFVEYASMRDAKKAVKS 124 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccC-CeeeEEEEEecChhhHHHHHHh
Confidence 45778888753221 235678999999999999888654 4999999999999999999986
No 163
>KOG3152|consensus
Probab=95.47 E-value=0.009 Score=56.08 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=55.8
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCC--------CCceeE----EEEEeCChHhHHHHHHh-CCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNET--------GRSRGF----GFVTFADPNNVGVVIQN-CPHTLD 267 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~t--------g~skG~----gFV~F~~~~~A~~Ai~~-~~~~l~ 267 (388)
-.||+++||+.++...|+++|+.||+|-+|.|-....+ +.++.+ +.|+|.+...|.+.... |+..|.
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 45899999999999999999999999999998776555 333332 56999999999887765 556666
Q ss_pred CCC
Q psy10362 268 GRT 270 (388)
Q Consensus 268 Gr~ 270 (388)
|++
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 654
No 164
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.45 E-value=0.01 Score=51.53 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=52.3
Q ss_pred CCCCCCCcccCC------CcCcH---HHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCC
Q psy10362 198 PSAGKPPADYSA------YGTYA---QYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDG 268 (388)
Q Consensus 198 ~~~~~vfVgnLp------~~~te---~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~G 268 (388)
|+..||.|.=+. ....+ ++|.+.|+.||++.=++++.+ .-+|+|.+-+.|.+|+..++.++.|
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g 96 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNG 96 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETT
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECC
Confidence 445667676555 12333 267778899999988888776 4699999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy10362 269 RTIDPKPCNP 278 (388)
Q Consensus 269 r~i~v~~a~~ 278 (388)
+.|+|+.-.+
T Consensus 97 ~~l~i~LKtp 106 (146)
T PF08952_consen 97 RTLKIRLKTP 106 (146)
T ss_dssp EEEEEEE---
T ss_pred EEEEEEeCCc
Confidence 9988876443
No 165
>KOG1995|consensus
Probab=95.22 E-value=0.032 Score=54.74 Aligned_cols=58 Identities=26% Similarity=0.420 Sum_probs=47.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEEecCCC--CCeeEEEEEcCChhhHHHHH
Q psy10362 290 FPKVFLGGLPSNVTETDLRTFFNRYGKVME--------VVIMSPRT--IRAGITRVPTQELPVQKEAT 347 (388)
Q Consensus 290 ~~~lfV~nLp~~vtee~L~~~F~~~G~I~~--------v~v~~d~~--~~rG~aFV~F~~~~~~~~a~ 347 (388)
..+|||-+|+..+++++|.++|.+++.|.. |.|.+|+. ++|+-|.|+|+|...++.|.
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai 133 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAI 133 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhh
Confidence 358999999999999999999999999854 56666654 79999999997776555554
No 166
>KOG2068|consensus
Probab=94.85 E-value=0.021 Score=55.72 Aligned_cols=112 Identities=12% Similarity=0.152 Sum_probs=72.1
Q ss_pred CCCCcccCCCcCcHHHH-H--HHHhccCceeEEEEeecCC--CCC-ceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQ-Q--RYFSRYGEVIDCVVMKNNE--TGR-SRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDP 273 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L-~--~~F~~~G~I~~v~i~~dk~--tg~-skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v 273 (388)
+.+||-+|+..+.++++ + +.|.+||.|.+|.+.++.. ... .---++|+|...++|.+||.. ++..+.++.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 45788899988766654 3 4799999999999888762 111 112389999999999999998 888888888766
Q ss_pred CCCCCCCCCCC---CCCCCCCeEEEcCC---CCCCCHHHHHHHhh
Q psy10362 274 KPCNPRTLQKP---KKNSSFPKVFLGGL---PSNVTETDLRTFFN 312 (388)
Q Consensus 274 ~~a~~~~~~~~---~~~~~~~~lfV~nL---p~~vtee~L~~~F~ 312 (388)
.+........- ..-.+...+|+.-+ ...+|.+|++..-.
T Consensus 158 ~~gttkycs~~l~~~~c~~~~cmylhe~~~~~Ds~~k~e~~~~~~ 202 (327)
T KOG2068|consen 158 SLGTTKYCSFYLRNDICQNPDCMYLHEIGDQEDSFTKDEMKSAKH 202 (327)
T ss_pred hhCCCcchhHHhhhhcccCccccccccccccccccchHHHHHHhh
Confidence 55443321110 00111224555333 34577777765433
No 167
>KOG2135|consensus
Probab=94.69 E-value=0.013 Score=59.39 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=64.1
Q ss_pred CCCCCCCcccCCCcCc-HHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTY-AQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~t-e~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a 276 (388)
.+-+.|-+.-+++.+. .++|...|.+||+|..|.|-.... .|.|+|.+..+|-+|-......|++|.|+|.|.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWH 443 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEEEe
Confidence 4556677777787764 478999999999999998866532 699999999999888888889999999999998
Q ss_pred CCCC
Q psy10362 277 NPRT 280 (388)
Q Consensus 277 ~~~~ 280 (388)
++..
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 8754
No 168
>KOG2202|consensus
Probab=94.65 E-value=0.015 Score=54.63 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=47.4
Q ss_pred HHHHHHh-ccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCC
Q psy10362 216 YQQRYFS-RYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCN 277 (388)
Q Consensus 216 ~L~~~F~-~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~ 277 (388)
||...|+ +||+|++++|-.+ ..-.-+|-.+|.|..+++|++|++. ++.-|+|++|...+..
T Consensus 84 d~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 4444445 9999999877654 2345678899999999999999997 8888999988776654
No 169
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=94.27 E-value=0.11 Score=37.33 Aligned_cols=49 Identities=10% Similarity=0.293 Sum_probs=36.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHH
Q psy10362 291 PKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQK 344 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~ 344 (388)
+.|-|.+.+.+..++ +.++|+.||+|+.+.+- ...-+.+|+|.+...++
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~----~~~~~~~l~y~~~~~ae 50 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP----ESTNWMYLKYKSRKDAE 50 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC----CCCcEEEEEECCHHHHH
Confidence 468888888777654 55699999999998887 45668999995554433
No 170
>KOG2253|consensus
Probab=94.18 E-value=0.07 Score=56.22 Aligned_cols=70 Identities=14% Similarity=0.098 Sum_probs=59.5
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
.++..+|||+||.+.+..+-++.+...+|-|.+++.+. |+|..|..+....+|+.. ....+++..+.++.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 35668899999999999999999999999988777654 999999999999999987 55677777776655
No 171
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.89 E-value=0.15 Score=37.86 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=42.6
Q ss_pred CCCCcccCCCcCcHHHHHHHHhcc----CceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRY----GEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN 261 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~----G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~ 261 (388)
.+|+|.++ .+++.+||+.+|..| . ..+|..+-|. -|-|.|.+.+.|.+||.+
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVA 61 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHc
Confidence 56899998 458889999999988 4 4577777774 488999999999999974
No 172
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.42 E-value=0.024 Score=45.18 Aligned_cols=68 Identities=22% Similarity=0.346 Sum_probs=45.7
Q ss_pred EEEEeCChHhHHHHHHh--CCCCCCCCCCCCCCC--CCCCCCC--CCCCCCCCeEEEcCCCCCCCHHHHHHHhh
Q psy10362 245 GFVTFADPNNVGVVIQN--CPHTLDGRTIDPKPC--NPRTLQK--PKKNSSFPKVFLGGLPSNVTETDLRTFFN 312 (388)
Q Consensus 245 gFV~F~~~~~A~~Ai~~--~~~~l~Gr~i~v~~a--~~~~~~~--~~~~~~~~~lfV~nLp~~vtee~L~~~F~ 312 (388)
|+|+|.++.-|++.|+. +...++...+.|+.. ....... -....+.++|.|.+||..+++|+|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999986 344566655544322 1111110 01234557999999999999999987655
No 173
>KOG0921|consensus
Probab=93.33 E-value=0.93 Score=49.96 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=12.8
Q ss_pred CCCcCCCCCCCCCCCCCCCCCC
Q psy10362 74 PGNMMQGYQGWGSTPQTQGFPG 95 (388)
Q Consensus 74 ~~~~~~g~~g~~~~~~~~g~~~ 95 (388)
+.|..-+|+..+++..++||++
T Consensus 1175 ~~~n~SgyRRGgssysgGGYGg 1196 (1282)
T KOG0921|consen 1175 PSNNNSGYRRGGSSYSGGGYGG 1196 (1282)
T ss_pred CccCccccccCCCCCCCCCcCC
Confidence 3444556666666666666654
No 174
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.32 E-value=0.81 Score=44.10 Aligned_cols=141 Identities=5% Similarity=0.028 Sum_probs=85.7
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecC-------CCCCceeEEEEEeCChHhHHHHHH-------hCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNN-------ETGRSRGFGFVTFADPNNVGVVIQ-------NCPHT 265 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk-------~tg~skG~gFV~F~~~~~A~~Ai~-------~~~~~ 265 (388)
.|.|...||..+++-..+...|-+||+|++|.++.+. ...+..-...+.|.+.+.+...-. +-...
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999875 112233467899999888755432 12345
Q ss_pred CCCCCCCCCCCCCCCCC-----CCC----------------CCCCCCeEEEcCCCCCC-CHHHHHHHh---hcCC----C
Q psy10362 266 LDGRTIDPKPCNPRTLQ-----KPK----------------KNSSFPKVFLGGLPSNV-TETDLRTFF---NRYG----K 316 (388)
Q Consensus 266 l~Gr~i~v~~a~~~~~~-----~~~----------------~~~~~~~lfV~nLp~~v-tee~L~~~F---~~~G----~ 316 (388)
|....|.+.+..-.... ..+ .....+.|.|.-- ..+ +++.|.+.+ ..-. .
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCceEE
Confidence 66666666554321110 000 1112244555433 344 333333322 2112 4
Q ss_pred eeEEEEecCCC----CCeeEEEEEcCChh
Q psy10362 317 VMEVVIMSPRT----IRAGITRVPTQELP 341 (388)
Q Consensus 317 I~~v~v~~d~~----~~rG~aFV~F~~~~ 341 (388)
|+.|.|+.... =++.||++.|-++.
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIs 202 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNIS 202 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHH
Confidence 67788886532 38899999994443
No 175
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.18 E-value=0.18 Score=39.63 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=39.0
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN 261 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~ 261 (388)
+..||-=-.|.++...||.++|+.||.|. |..+.|- -|||...+.+.|..|+..
T Consensus 8 RdHVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 8 RDHVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp GCCEEEEE--TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHH
T ss_pred cceEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHH
Confidence 34454434899999999999999999985 4445542 699999999999998875
No 176
>KOG4676|consensus
Probab=93.11 E-value=0.094 Score=52.11 Aligned_cols=57 Identities=14% Similarity=0.207 Sum_probs=48.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-----CCeeEEEEEcCChhhHHHHH
Q psy10362 291 PKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-----IRAGITRVPTQELPVQKEAT 347 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-----~~rG~aFV~F~~~~~~~~a~ 347 (388)
..|.|.||.+.+|.|+++.+|.-.|.|.+++|+.... .....|||.|.|..++..|.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ 69 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ 69 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh
Confidence 3789999999999999999999999999999997543 46789999998776555554
No 177
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=92.93 E-value=0.18 Score=43.59 Aligned_cols=94 Identities=19% Similarity=0.206 Sum_probs=67.2
Q ss_pred eEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCeEEEcCCCCC-CCHHHHHHHhhcCCCeeEE
Q psy10362 243 GFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPRTLQKP-KKNSSFPKVFLGGLPSN-VTETDLRTFFNRYGKVMEV 320 (388)
Q Consensus 243 G~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~~~~~~~~-~~~~~~~~lfV~nLp~~-vtee~L~~~F~~~G~I~~v 320 (388)
++..+.|.++++++++++.....+.+..+.++.-.+...... ......-=|.|.+||.. .+++-|+++-+.+|.+..+
T Consensus 56 ~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~v 135 (153)
T PF14111_consen 56 NLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEV 135 (153)
T ss_pred CeEEEEEEeccceeEEEecccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEE
Confidence 488999999999999998777778887777766543322111 11112234778999987 6888899999999999998
Q ss_pred EEecCCCCCeeEEEEE
Q psy10362 321 VIMSPRTIRAGITRVP 336 (388)
Q Consensus 321 ~v~~d~~~~rG~aFV~ 336 (388)
...+.......|+.|.
T Consensus 136 D~~t~~~~~~~~~Rv~ 151 (153)
T PF14111_consen 136 DENTLKRTRLDFARVR 151 (153)
T ss_pred EcCCCCcccccEEEEE
Confidence 8776544455566664
No 178
>KOG2416|consensus
Probab=92.40 E-value=0.062 Score=55.93 Aligned_cols=63 Identities=8% Similarity=0.005 Sum_probs=50.7
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHh-ccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFS-RYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPH 264 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~-~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~ 264 (388)
....+..|||.||-.-+|.-.|+.|+. ..|.|++.||-+-| .+|||.|.+.++|...+.+ ++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIK------ShCyV~yss~eEA~atr~AlhnV 504 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIK------SHCYVSYSSVEEAAATREALHNV 504 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhh------cceeEecccHHHHHHHHHHHhcc
Confidence 345567899999999999999999998 66677777664433 4899999999999988886 543
No 179
>KOG0112|consensus
Probab=92.39 E-value=0.18 Score=54.95 Aligned_cols=76 Identities=12% Similarity=0.212 Sum_probs=59.6
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCC--CCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDG--RTIDP 273 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~G--r~i~v 273 (388)
....+++||++|..++....|...|..||.|..|.+-+. . -|++|.|.+...++.|++. .+..|.+ +.|.|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg----q--~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG----Q--PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC----C--cceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 345578999999999999999999999999988766443 2 2999999999999999985 4444543 44666
Q ss_pred CCCCC
Q psy10362 274 KPCNP 278 (388)
Q Consensus 274 ~~a~~ 278 (388)
.++..
T Consensus 526 dla~~ 530 (975)
T KOG0112|consen 526 DLASP 530 (975)
T ss_pred ccccC
Confidence 65543
No 180
>KOG4849|consensus
Probab=91.94 E-value=0.11 Score=50.94 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=42.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEEecCCC--CCeeEEEEEcCCh
Q psy10362 291 PKVFLGGLPSNVTETDLRTFFNRYG--KVMEVVIMSPRT--IRAGITRVPTQEL 340 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~~~F~~~G--~I~~v~v~~d~~--~~rG~aFV~F~~~ 340 (388)
..+||+||-+..|++||.+.+...| .|.+++++.++. .+||||+|....+
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~Sd 134 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSD 134 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecch
Confidence 4699999999999999999988776 567788888764 7999999988444
No 181
>KOG1996|consensus
Probab=90.17 E-value=0.65 Score=44.71 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=46.5
Q ss_pred HHHHHHHhccCceeEEEEeecCCCCCcee-EEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 215 QYQQRYFSRYGEVIDCVVMKNNETGRSRG-FGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 215 ~~L~~~F~~~G~I~~v~i~~dk~tg~skG-~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
+++++-.++||.|.+|.|+.++..-..+- --||+|...++|.+|+-. ++..|.||.+.-.+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 46777889999999999988754332222 379999999999999875 77778888765444
No 182
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=89.43 E-value=0.86 Score=39.53 Aligned_cols=75 Identities=9% Similarity=0.068 Sum_probs=54.2
Q ss_pred CCCCCCCCCCcccCCCcCcH-HH---HHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCC
Q psy10362 195 PSGPSAGKPPADYSAYGTYA-QY---QQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRT 270 (388)
Q Consensus 195 ~~~~~~~~vfVgnLp~~~te-~~---L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~ 270 (388)
..+++-.||.|.=|..++.. +| |...++.||+|.+|.+.-. --|.|.|.|..+|=.|+.+......|..
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s~~pgtm 153 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQSRAPGTM 153 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcCCCCCce
Confidence 33455677888777666533 33 4556789999999877432 2699999999999999998655667777
Q ss_pred CCCCCC
Q psy10362 271 IDPKPC 276 (388)
Q Consensus 271 i~v~~a 276 (388)
+++.|-
T Consensus 154 ~qCsWq 159 (166)
T PF15023_consen 154 FQCSWQ 159 (166)
T ss_pred EEeecc
Confidence 776664
No 183
>KOG2202|consensus
Probab=89.41 E-value=0.14 Score=48.29 Aligned_cols=76 Identities=14% Similarity=0.134 Sum_probs=52.0
Q ss_pred HHHHHHhh-cCCCeeEEEEecCCC-CCeeEEEEEcCChhhHHHHHHHHHHHhhccccceeccCCCccCCCCCCCCCCCCc
Q psy10362 305 TDLRTFFN-RYGKVMEVVIMSPRT-IRAGITRVPTQELPVQKEATAVQQVLRRSSTTKVQAPFGATTLSPPNLTTPTGEC 382 (388)
Q Consensus 305 e~L~~~F~-~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~~~~i~~~~~~~~~~pP~~~~~~~~~ 382 (388)
|+|...|+ +||+|++++|..... .-+|=++|.| ...++|..|+...+...+. ...-+....|...+.-.+|
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f------~~Ee~ae~a~~~lnnRw~~-G~pi~ae~~pvT~~rea~C 155 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKF------RSEEDAEAALEDLNNRWYN-GRPIHAELSPVTDFREAIC 155 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhc------ccHHHHHHHHHHHcCcccc-CCcceeeecCcCchhhhhh
Confidence 45555666 999999999987654 6788899999 4555556666665555443 3344455566777778888
Q ss_pred eeeec
Q psy10362 383 RTFTL 387 (388)
Q Consensus 383 r~ft~ 387 (388)
+.|-.
T Consensus 156 ~~~e~ 160 (260)
T KOG2202|consen 156 GQFER 160 (260)
T ss_pred ccccc
Confidence 88753
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=89.13 E-value=1.2 Score=35.11 Aligned_cols=63 Identities=21% Similarity=0.381 Sum_probs=39.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhhcccccee
Q psy10362 291 PKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRRSSTTKVQ 362 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~~~~i~ 362 (388)
.+||--..|..+-..||.++|+.||.|. |..+.| .-|||...+. +.+..+..++......+|+
T Consensus 9 dHVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~d-----TSAfV~l~~r---~~~~~v~~~~~~~~~y~i~ 71 (87)
T PF08675_consen 9 DHVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWIND-----TSAFVALHNR---DQAKVVMNTLKKNSSYRIQ 71 (87)
T ss_dssp CCEEEEE--TT--HHHHHHHCCCCCCEE-EEEECT-----TEEEEEECCC---HHHHHHHHHHTT-SSSEEE
T ss_pred ceEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcC-----CcEEEEeecH---HHHHHHHHHhccCCceEEE
Confidence 3455545999999999999999999986 444433 2488888555 4455666676665555554
No 185
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.10 E-value=0.24 Score=44.73 Aligned_cols=72 Identities=7% Similarity=-0.056 Sum_probs=43.4
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhc-cCce---eEEEEeec-CCCC-CceeEEEEEeCChHhHHHHHHh-CCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSR-YGEV---IDCVVMKN-NETG-RSRGFGFVTFADPNNVGVVIQN-CPHTLDGRT 270 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~-~G~I---~~v~i~~d-k~tg-~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~ 270 (388)
+..+|.|++||+.+||+++.+.++. ++.. ..+.-... +... ..-.-|||.|.+.+++...++. +++.|...+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 3468999999999999999887765 5554 23321121 1111 1234689999999999888886 666655444
No 186
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=88.72 E-value=2.4 Score=35.19 Aligned_cols=62 Identities=10% Similarity=0.230 Sum_probs=43.4
Q ss_pred CCcccCCCcCcHHHHHHHHhccC-ceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCC
Q psy10362 203 PPADYSAYGTYAQYQQRYFSRYG-EVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRT 270 (388)
Q Consensus 203 vfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~ 270 (388)
+-+.-.|+.++.++|..+.+.+- .|..++|++|.. .++=..+++|.+.++|....+. ++|++
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~----fNGk~ 78 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEE----FNGKP 78 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHH----hCCCc
Confidence 34444556666677776666654 567888988732 3565788999999999999875 55554
No 187
>KOG1996|consensus
Probab=88.50 E-value=0.79 Score=44.15 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=41.9
Q ss_pred HHHHHHHhhcCCCeeEEEEecCCC---CCeeEEEEEcCChhhHHHHHHHHHHHhhccccceec
Q psy10362 304 ETDLRTFFNRYGKVMEVVIMSPRT---IRAGITRVPTQELPVQKEATAVQQVLRRSSTTKVQA 363 (388)
Q Consensus 304 ee~L~~~F~~~G~I~~v~v~~d~~---~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~~~~i~~ 363 (388)
++++++.+++||.|..|.|+.+++ ...--.||+| .+.+.+.+|+..++.+.+.-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF------~r~e~aiKA~VdlnGRyFGG 356 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEF------ERVESAIKAVVDLNGRYFGG 356 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeee------ccHHHHHHHHHhcCCceecc
Confidence 367889999999999999998875 3455579999 66777888888777655443
No 188
>KOG0921|consensus
Probab=87.74 E-value=7.1 Score=43.46 Aligned_cols=8 Identities=25% Similarity=0.339 Sum_probs=3.6
Q ss_pred CCCCCCCC
Q psy10362 36 DMGNNQWG 43 (388)
Q Consensus 36 ~~~~~~~~ 43 (388)
.|...-||
T Consensus 1167 KmaryDnG 1174 (1282)
T KOG0921|consen 1167 KMARYDNG 1174 (1282)
T ss_pred ccccccCC
Confidence 34444444
No 189
>KOG2314|consensus
Probab=87.73 E-value=0.87 Score=47.49 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=44.3
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChhhHHHHHHHHHHHhh
Q psy10362 290 FPKVFLGGLPSNV------TETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELPVQKEATAVQQVLRR 355 (388)
Q Consensus 290 ~~~lfV~nLp~~v------tee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~~~~a~~a~~aL~~ 355 (388)
+..|+|.++|.-- -...|..+|+++|+|..+.+..+.. ..+||.|++|.+. ..|..+.+-|.+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~---~~A~~aVK~l~G 127 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASM---RDAKKAVKSLNG 127 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecCh---hhHHHHHHhccc
Confidence 4578888888521 2235678999999999999987754 7999999999444 344444444443
No 190
>KOG4285|consensus
Probab=87.39 E-value=0.83 Score=44.17 Aligned_cols=60 Identities=23% Similarity=0.470 Sum_probs=45.7
Q ss_pred HHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCC-CCCCCCCCCC
Q psy10362 215 QYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRT-IDPKPCNPRT 280 (388)
Q Consensus 215 ~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~-i~v~~a~~~~ 280 (388)
..|..+|++||.|++...-. ++ -+-+|.|.+.-+|++||.+++..|++.. |-|+.+..+.
T Consensus 211 s~vL~~F~~cG~Vvkhv~~~---ng---NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 211 SIVLNLFSRCGEVVKHVTPS---NG---NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred hHHHHHHHhhCeeeeeecCC---CC---ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCHH
Confidence 56788999999997765442 22 2889999999999999999988888864 4566654443
No 191
>KOG2591|consensus
Probab=86.63 E-value=0.8 Score=47.65 Aligned_cols=67 Identities=16% Similarity=0.162 Sum_probs=53.4
Q ss_pred CCCCCcccCCCcCcHHHHHHHHh--ccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh---CCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFS--RYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN---CPHTLDGRTIDP 273 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~--~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~---~~~~l~Gr~i~v 273 (388)
.|.|.+.-||..+-+++|+.||+ .|-++.+|..-.+. -=||+|++..||+.|.+. .-.+|.|+.|.-
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 45678899999999999999996 46678888876653 259999999999998764 345788887743
No 192
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=85.93 E-value=1.5 Score=33.04 Aligned_cols=52 Identities=13% Similarity=0.242 Sum_probs=37.8
Q ss_pred cCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCC
Q psy10362 211 GTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTI 271 (388)
Q Consensus 211 ~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i 271 (388)
.++-+||+..+++|.- .+|+.|+ | || ||.|.+..+|+++... ++..+...+|
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m 63 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-T----GF-YIVFNDSKEAERCFRAEDGTLFFTYRM 63 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-C----EE-EEEECChHHHHHHHHhcCCCEEEEEEE
Confidence 5778899999999952 3445553 3 45 8999999999999987 5555544443
No 193
>KOG2591|consensus
Probab=85.06 E-value=5 Score=42.02 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=51.0
Q ss_pred HHHHHHh-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhh--cCCCeeEEEEecCCCCCee
Q psy10362 255 VGVVIQN-CPHTLDGRTIDPKPCNPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFN--RYGKVMEVVIMSPRTIRAG 331 (388)
Q Consensus 255 A~~Ai~~-~~~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~--~~G~I~~v~v~~d~~~~rG 331 (388)
...+|+. -+.+++.+-++|+.... .+.|.+.-|+.....|+|+.+|+ .+..+.+|.+....+
T Consensus 150 I~Evlresp~VqvDekgekVrp~~k-----------RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n---- 214 (684)
T KOG2591|consen 150 IVEVLRESPNVQVDEKGEKVRPNHK-----------RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN---- 214 (684)
T ss_pred HHHHHhcCCCceeccCccccccCcc-----------eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc----
Confidence 3444444 44555555555555433 24688899999999999999999 578899998875432
Q ss_pred EEEEEcCChhhHHHH
Q psy10362 332 ITRVPTQELPVQKEA 346 (388)
Q Consensus 332 ~aFV~F~~~~~~~~a 346 (388)
=||+|+++..+..|
T Consensus 215 -WyITfesd~DAQqA 228 (684)
T KOG2591|consen 215 -WYITFESDTDAQQA 228 (684)
T ss_pred -eEEEeecchhHHHH
Confidence 38889665444333
No 194
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=84.19 E-value=1.6 Score=35.62 Aligned_cols=59 Identities=14% Similarity=0.308 Sum_probs=35.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEE-EecCC--------CCCeeEEEEEcCChhhHHHHHHHHHHHhh
Q psy10362 290 FPKVFLGGLPSNVTETDLRTFFNRYGKVMEVV-IMSPR--------TIRAGITRVPTQELPVQKEATAVQQVLRR 355 (388)
Q Consensus 290 ~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~-v~~d~--------~~~rG~aFV~F~~~~~~~~a~~a~~aL~~ 355 (388)
.+-|.|-+.|... ...|.++|++||.|.+.. +.++. .....+.-|+|++ ..+|++||.+
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~------~~~A~rAL~~ 73 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDN------PLSAQRALQK 73 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESS------HHHHHHHHTT
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCC------HHHHHHHHHh
Confidence 3568888888884 456778999999998775 22211 1456788999944 4555556554
No 195
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=83.19 E-value=3.6 Score=32.59 Aligned_cols=54 Identities=22% Similarity=0.385 Sum_probs=31.1
Q ss_pred CeEEEcCCCCCCCHHHH----HHHhhcCC-CeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhh
Q psy10362 291 PKVFLGGLPSNVTETDL----RTFFNRYG-KVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRR 355 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L----~~~F~~~G-~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~ 355 (388)
..|+|.|||.+.+...| ++++..+| .|..|. .+-|+|.|.+ ++.|..|++-|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--------~~tAilrF~~---~~~A~RA~KRmeg 61 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--------GGTAILRFPN---QEFAERAQKRMEG 61 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESS---HHHHHHHHHHHTT
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--------CCEEEEEeCC---HHHHHHHHHhhcc
Confidence 46999999999887655 45666774 566552 2569999944 4455555555554
No 196
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=82.58 E-value=2.5 Score=41.50 Aligned_cols=57 Identities=16% Similarity=0.373 Sum_probs=41.5
Q ss_pred CeEEEcCCCCCCCHHHH------HHHhhcCCCeeEEEEecCCC----C-CeeEEEEEcCChhhHHHHH
Q psy10362 291 PKVFLGGLPSNVTETDL------RTFFNRYGKVMEVVIMSPRT----I-RAGITRVPTQELPVQKEAT 347 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L------~~~F~~~G~I~~v~v~~d~~----~-~rG~aFV~F~~~~~~~~a~ 347 (388)
+-|||-+|++.|.+|++ .++|.+||.|..|.|-+... . ..-=++|+|...+.++++.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcI 182 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCI 182 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHH
Confidence 45899999999988873 38999999999988876531 1 2122489997666665553
No 197
>KOG3152|consensus
Probab=81.86 E-value=1.5 Score=41.60 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=33.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecC
Q psy10362 289 SFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSP 325 (388)
Q Consensus 289 ~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d 325 (388)
..-.||+++||+......|+++|+.||.|-.|.|...
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE 109 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPE 109 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecch
Confidence 3457999999999999999999999999999988764
No 198
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=80.46 E-value=2.1 Score=35.68 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=58.3
Q ss_pred CCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCCCC-CCCCCCC
Q psy10362 208 SAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPR-TLQKPKK 286 (388)
Q Consensus 208 Lp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~~~-~~~~~~~ 286 (388)
||+-+ +.|.++|+.-|+|.+|..+..-.+. +|..-++-.-..+++. |.+...... +..-...
T Consensus 11 lPPYT--nKLSDYfeSPGKI~svItvtqypdn--------------dal~~~~G~lE~vDg~-i~IGs~q~~~sV~i~gT 73 (145)
T TIGR02542 11 LPPYT--NKLSDYFESPGKIQSVITVTQYPDN--------------DALLYVHGTLEQVDGN-IRIGSGQTPASVRIQGT 73 (145)
T ss_pred cCCcc--chhhHHhcCCCceEEEEEEeccCCc--------------hhhheeeeehhhccCc-EEEccCCCcccEEEecC
Confidence 56554 4688999999999998766542211 1111111000113333 333322211 1111111
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhc---CCCeeEEEEecCC--CCCeeEEEEEc
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNR---YGKVMEVVIMSPR--TIRAGITRVPT 337 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~---~G~I~~v~v~~d~--~~~rG~aFV~F 337 (388)
...+..+| -|..+|..+|+++|+. |-.|..-.|.+|- .-+-..||..|
T Consensus 74 Psgnnv~F---~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~ 126 (145)
T TIGR02542 74 PSGNNVIF---PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLF 126 (145)
T ss_pred CCCCceec---CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEe
Confidence 12222333 4678999999999994 4445544555552 35778999988
No 199
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=79.23 E-value=4.7 Score=30.70 Aligned_cols=58 Identities=12% Similarity=0.193 Sum_probs=33.2
Q ss_pred CcCcHHHHHHHHhccC-----ceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 210 YGTYAQYQQRYFSRYG-----EVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 210 ~~~te~~L~~~F~~~G-----~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
..++..+|..++.... .|-+|.|..+ |.||+-... .|+.+++. ++..+.++++.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3578888999887654 3556777655 899988654 77778887 788999999987653
No 200
>KOG2416|consensus
Probab=77.49 E-value=2.3 Score=44.75 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=40.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhh-cCCCeeEEEEecCCCCCeeEEEEEcCChhhH
Q psy10362 286 KNSSFPKVFLGGLPSNVTETDLRTFFN-RYGKVMEVVIMSPRTIRAGITRVPTQELPVQ 343 (388)
Q Consensus 286 ~~~~~~~lfV~nLp~~vtee~L~~~F~-~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~ 343 (388)
.....+.|+|.||-.-+|.-+|++++. ..|.|+.+.| ++-+..|||.|...+.+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm----DkIKShCyV~yss~eEA 494 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM----DKIKSHCYVSYSSVEEA 494 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH----HHhhcceeEecccHHHH
Confidence 344557899999999999999999999 5566666622 25667799999554433
No 201
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=75.83 E-value=3.6 Score=37.43 Aligned_cols=61 Identities=16% Similarity=0.161 Sum_probs=41.6
Q ss_pred cHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-C--CCCCCCCCCCCCCCCCC
Q psy10362 213 YAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-C--PHTLDGRTIDPKPCNPR 279 (388)
Q Consensus 213 te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~--~~~l~Gr~i~v~~a~~~ 279 (388)
..+.|+++|..+..+..+.+++. -+-..|.|.+.++|.+|... + ...+.+..|++.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 44789999999999888777654 12578999999999999987 5 56788888877766433
No 202
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=75.40 E-value=6.8 Score=32.83 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=36.6
Q ss_pred eEEEcCCCCC---------CCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCC-hhhHHHHHHHHHHHhh
Q psy10362 292 KVFLGGLPSN---------VTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQE-LPVQKEATAVQQVLRR 355 (388)
Q Consensus 292 ~lfV~nLp~~---------vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~-~~~~~~a~~a~~aL~~ 355 (388)
++.|-|++.+ ++.++|++.|+.|..++ |+.+.++.-++++++|+|.. ..-...|....+.+..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~~~F~~ 82 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLEKHFEA 82 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHHHHHHHHHH
Confidence 4555666432 45689999999997764 77777777789999999954 3445555555555553
No 203
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=73.38 E-value=30 Score=28.70 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=35.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcC-CCeeEEEEecCCCCCeeEEEEEcCCh
Q psy10362 292 KVFLGGLPSNVTETDLRTFFNRY-GKVMEVVIMSPRTIRAGITRVPTQEL 340 (388)
Q Consensus 292 ~lfV~nLp~~vtee~L~~~F~~~-G~I~~v~v~~d~~~~rG~aFV~F~~~ 340 (388)
.+.+...|..++-++|..+.+.+ -.|+.++|++|....+=.++++|.+.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~ 64 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQ 64 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCH
Confidence 34444555556667777777765 46788999998877888899999444
No 204
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=73.37 E-value=10 Score=33.03 Aligned_cols=55 Identities=11% Similarity=0.180 Sum_probs=37.8
Q ss_pred CCCCCeEEEcCCCCCC-CH---HHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 287 NSSFPKVFLGGLPSNV-TE---TDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~v-te---e~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
.....+|.|.=|...+ .. ..+...++.||.|.+|.++ .+--|+|.|.|..++-.|
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----GrqsavVvF~d~~SAC~A 141 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GRQSAVVVFKDITSACKA 141 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CCceEEEEehhhHHHHHH
Confidence 3455788887766554 22 3445667799999999988 456799999666544443
No 205
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=72.85 E-value=14 Score=27.42 Aligned_cols=51 Identities=14% Similarity=0.298 Sum_probs=34.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcC---CCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 290 FPKVFLGGLPSNVTETDLRTFFNRY---GKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 290 ~~~lfV~nLp~~vtee~L~~~F~~~---G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
..+|+|.+|.. ++.++|+.+|..| .....|..+.|. + |=|.|.+...+.+|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt--S---cNvvf~d~~~A~~A 58 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT--S---CNVVFKDEETAARA 58 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC--c---EEEEECCHHHHHHH
Confidence 35899999854 7888999999988 245677777663 2 45566454444333
No 206
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=72.73 E-value=4.2 Score=35.48 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=35.4
Q ss_pred CCCCeEEEcCCC-----CCCCHH----HHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhh
Q psy10362 288 SSFPKVFLGGLP-----SNVTET----DLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRR 355 (388)
Q Consensus 288 ~~~~~lfV~nLp-----~~vtee----~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~ 355 (388)
.++-||.|.-+. ...-++ +|.+.|+.||.|.-||++.+. -.|+|.+ ...|++||..
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~~------mwVTF~d------g~sALaals~ 89 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGDT------MWVTFRD------GQSALAALSL 89 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETTC------EEEEESS------CHHHHHHHHG
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCCe------EEEEECc------cHHHHHHHcc
Confidence 345677776666 222333 777899999999999999764 7899944 4455555554
No 207
>KOG4574|consensus
Probab=72.60 E-value=2.8 Score=45.88 Aligned_cols=75 Identities=12% Similarity=0.166 Sum_probs=58.3
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCC--CCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPH--TLDGRTIDPKPC 276 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~--~l~Gr~i~v~~a 276 (388)
..+.++-|.+-.++...|..+|+.||.|.++|.++|-+ .+.|+|.+.+.|..|+++ .+. ...|-+.+|.++
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 34567777888889999999999999999999988854 799999999999999986 433 244555566555
Q ss_pred CCCC
Q psy10362 277 NPRT 280 (388)
Q Consensus 277 ~~~~ 280 (388)
+...
T Consensus 372 k~~~ 375 (1007)
T KOG4574|consen 372 KTLP 375 (1007)
T ss_pred cccc
Confidence 5433
No 208
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=71.45 E-value=5.6 Score=35.81 Aligned_cols=53 Identities=13% Similarity=0.035 Sum_probs=30.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhc-CCCe---eEEEEecCCC----CCeeEEEEEcCChh
Q psy10362 289 SFPKVFLGGLPSNVTETDLRTFFNR-YGKV---MEVVIMSPRT----IRAGITRVPTQELP 341 (388)
Q Consensus 289 ~~~~lfV~nLp~~vtee~L~~~F~~-~G~I---~~v~v~~d~~----~~rG~aFV~F~~~~ 341 (388)
...+|.|.+||+.+|++++.+.++. ++.. .++.-..+.. ..-.-|+|.|.+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~ 66 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPE 66 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCH
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHH
Confidence 3458999999999999999987776 6655 3444223321 23466788885543
No 209
>KOG0804|consensus
Probab=71.19 E-value=8.8 Score=39.28 Aligned_cols=55 Identities=11% Similarity=0.178 Sum_probs=45.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcC-CCeeEEEEecCCCCCeeEEEEEcCChhhHH
Q psy10362 290 FPKVFLGGLPSNVTETDLRTFFNRY-GKVMEVVIMSPRTIRAGITRVPTQELPVQK 344 (388)
Q Consensus 290 ~~~lfV~nLp~~vtee~L~~~F~~~-G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~ 344 (388)
.+.|+|-.+|..+|-.||..|+..| -.|.+++|++|....+=.++++|.+.++++
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~ 129 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADAD 129 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHH
Confidence 6899999999999999999999966 468999999987777888999994444333
No 210
>KOG2068|consensus
Probab=70.95 E-value=3.1 Score=40.84 Aligned_cols=57 Identities=18% Similarity=0.316 Sum_probs=42.4
Q ss_pred CeEEEcCCCCCCCHHHHH---HHhhcCCCeeEEEEecCCC-----CCeeEEEEEcCChhhHHHHH
Q psy10362 291 PKVFLGGLPSNVTETDLR---TFFNRYGKVMEVVIMSPRT-----IRAGITRVPTQELPVQKEAT 347 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~---~~F~~~G~I~~v~v~~d~~-----~~rG~aFV~F~~~~~~~~a~ 347 (388)
+.+||-+|+..+.++++. +.|.+||.|..|.+..+.. ..-.-++|+|+.++.++.+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci 142 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCI 142 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHH
Confidence 468899999888777665 5788999999999998762 22334889997766666654
No 211
>KOG0804|consensus
Probab=70.39 E-value=10 Score=38.76 Aligned_cols=67 Identities=7% Similarity=0.093 Sum_probs=52.7
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccC-ceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYG-EVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDG 268 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~G 268 (388)
...|+|=-+|..++-.||..|...+- .|.+++|++|..- ++=..+|+|.+.++|....+. ++..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 57788999999999999999987554 6789999997432 233578999999999999886 6655543
No 212
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=70.02 E-value=79 Score=29.58 Aligned_cols=9 Identities=0% Similarity=-0.256 Sum_probs=4.8
Q ss_pred eEEEEeecC
Q psy10362 228 IDCVVMKNN 236 (388)
Q Consensus 228 ~~v~i~~dk 236 (388)
++|.|..|.
T Consensus 116 TKiDLPVDI 124 (238)
T PF02084_consen 116 TKIDLPVDI 124 (238)
T ss_pred ccccccccc
Confidence 455555553
No 213
>KOG2193|consensus
Probab=68.65 E-value=6.5 Score=39.91 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=39.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHH
Q psy10362 291 PKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQV 352 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~a 352 (388)
++||++||.+.++..+|..+|...-.-.+-.++ -..+|+||...|...+..+.+.+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl----~k~gyafvd~pdq~wa~kaie~~sg 59 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL----VKSGYAFVDCPDQQWANKAIETLSG 59 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee----eecceeeccCCchhhhhhhHHhhch
Confidence 478999999999999999999865111111111 3568999988666555555444433
No 214
>KOG2318|consensus
Probab=63.06 E-value=23 Score=37.47 Aligned_cols=73 Identities=10% Similarity=0.144 Sum_probs=53.9
Q ss_pred CCCCCCCCcccCCCc-CcHHHHHHHHhcc----CceeEEEEeecC----------CCCC---------------------
Q psy10362 197 GPSAGKPPADYSAYG-TYAQYQQRYFSRY----GEVIDCVVMKNN----------ETGR--------------------- 240 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~-~te~~L~~~F~~~----G~I~~v~i~~dk----------~tg~--------------------- 240 (388)
....++|-|-||.|+ +.-.||..+|+.| |.|++|.|+... .+|-
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999998 7778999999877 689999986510 0111
Q ss_pred ---------------c-eeEEEEEeCChHhHHHHHHh-CCCCCCCC
Q psy10362 241 ---------------S-RGFGFVTFADPNNVGVVIQN-CPHTLDGR 269 (388)
Q Consensus 241 ---------------s-kG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr 269 (388)
- -=||.|+|.+.+.|...... ++.+|...
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 1 12799999999999888876 66666543
No 215
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=60.72 E-value=3.1 Score=41.79 Aligned_cols=62 Identities=10% Similarity=-0.104 Sum_probs=51.3
Q ss_pred CCCCCCcccCCCcCcHH--------HHHHHHhc--cCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHH
Q psy10362 199 SAGKPPADYSAYGTYAQ--------YQQRYFSR--YGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQ 260 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~--------~L~~~F~~--~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~ 260 (388)
..|.+|+.+.....+.+ +|..+|.. .+++..+...+|.....++|--|++|...+.+++++.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34678888888776655 89999988 6778888888887677888999999999999999885
No 216
>KOG2253|consensus
Probab=59.57 E-value=12 Score=40.00 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=38.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEc
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPT 337 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F 337 (388)
....+|||++|...+.++-++.+...+|.|..++.+. |+|..|
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f 80 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEF 80 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccch
Confidence 4457999999999999999999999999999888774 899999
No 217
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=55.29 E-value=87 Score=28.51 Aligned_cols=27 Identities=11% Similarity=0.233 Sum_probs=16.8
Q ss_pred ccccCceEEEEeeeceee--EeeecCCCC
Q psy10362 3 EDEQGLTYYITCFLLQQV--EIKKAEPRD 29 (388)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 29 (388)
+|++|.+.+.+.|.=..| +++.+..+.
T Consensus 89 edkdG~~rt~~eV~a~~Vg~~L~~~~a~~ 117 (186)
T PRK07772 89 ETREGEKRTVVELEVDEIGPSLRYATAKV 117 (186)
T ss_pred ECCCCCEEEEEEEEEEEcccceeeeecee
Confidence 466787777777765554 456554443
No 218
>KOG4483|consensus
Probab=51.65 E-value=18 Score=36.48 Aligned_cols=53 Identities=9% Similarity=0.048 Sum_probs=43.0
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCce-eEEEEeecCCCCCceeEEEEEeCChHhHHHHHH
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEV-IDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQ 260 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I-~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~ 260 (388)
..|=|.++|.....+||..+|+.|+.- -+|+.+.|. ++|-.|.+...|..||.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 356678888898899999999999642 456666664 79999999999999986
No 219
>KOG4574|consensus
Probab=50.69 E-value=12 Score=41.28 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=45.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhhccccce
Q psy10362 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRRSSTTKV 361 (388)
Q Consensus 292 ~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~~~~i 361 (388)
+.++.|++-..+...|..+|++||+|.+++.++|- -.+.|+| .+.+.|..+.+||.+.+..++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~----N~alvs~---~s~~sai~a~dAl~gkevs~~ 362 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL----NMALVSF---SSVESAILALDALQGKEVSVT 362 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc----cchhhhh---HHHHHHHHhhhhhcCCccccc
Confidence 45666666777888999999999999999998764 3488888 444555566666666554333
No 220
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=49.84 E-value=31 Score=33.57 Aligned_cols=48 Identities=6% Similarity=0.175 Sum_probs=40.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC---------CCeeEEEEEc
Q psy10362 290 FPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT---------IRAGITRVPT 337 (388)
Q Consensus 290 ~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~---------~~rG~aFV~F 337 (388)
.+.|.+.||..+++-..+.+.|.+||.|++|.++.+.. +...-..+.|
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSF 71 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSF 71 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEee
Confidence 45688999999999999999999999999999998761 3456667777
No 221
>KOG4285|consensus
Probab=47.96 E-value=63 Score=31.65 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=36.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhh
Q psy10362 290 FPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRR 355 (388)
Q Consensus 290 ~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~ 355 (388)
+.=|.|-+.++.-+. .|..+|++||.|+..+.- ..--+-.|.| ....++++||.+
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~----~ngNwMhirY------ssr~~A~KALsk 251 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTP----SNGNWMHIRY------SSRTHAQKALSK 251 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecC----CCCceEEEEe------cchhHHHHhhhh
Confidence 455777788876554 566799999999865544 3455778888 344445555554
No 222
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=44.46 E-value=33 Score=33.45 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=33.6
Q ss_pred EEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhh
Q psy10362 245 GFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFN 312 (388)
Q Consensus 245 gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~ 312 (388)
|||+|++..+|..|++... ....+.++++.| .+.+.|+=.||..+..+..+|.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~-~~~~~~~~v~~A-----------PeP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLL-SKRPNSWRVSPA-----------PEPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHh-cCCCCCceEeeC-----------CCcccccccccCCChHHHHHHHHHH
Confidence 7999999999999998411 111233344443 2223566677766666666654433
No 223
>KOG2891|consensus
Probab=42.75 E-value=9.8 Score=36.57 Aligned_cols=35 Identities=29% Similarity=0.508 Sum_probs=27.8
Q ss_pred CCeEEEcCCCCC------------CCHHHHHHHhhcCCCeeEEEEec
Q psy10362 290 FPKVFLGGLPSN------------VTETDLRTFFNRYGKVMEVVIMS 324 (388)
Q Consensus 290 ~~~lfV~nLp~~------------vtee~L~~~F~~~G~I~~v~v~~ 324 (388)
..+|++..||-. -+++.|+..|+.||+|..|.|..
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 357888888732 46789999999999999988764
No 224
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=41.06 E-value=43 Score=26.54 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=34.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEc
Q psy10362 291 PKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPT 337 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F 337 (388)
.-|||++++..|-|.....+.+..+.=..+-+..+++ ..||.|-++
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~n-eqG~~~~t~ 71 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNN-EQGFDFRTL 71 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCC-CCCEEEEEe
Confidence 4799999999988876666666555545555555555 999999877
No 225
>KOG4410|consensus
Probab=35.25 E-value=64 Score=31.33 Aligned_cols=49 Identities=8% Similarity=-0.001 Sum_probs=35.3
Q ss_pred CCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhH
Q psy10362 202 KPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNV 255 (388)
Q Consensus 202 ~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A 255 (388)
-|+|+||+.++.-.||+..+.+.+.+ -..|-.. -+++-||+-|-+...+
T Consensus 332 di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 332 DIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNRKGV 380 (396)
T ss_pred ceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCccCC
Confidence 39999999999999999999877643 2333222 2456799999776443
No 226
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=35.17 E-value=1.3e+02 Score=30.65 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=31.6
Q ss_pred CCCCCCCCCcccCCCc-CcHHHHHHHHhcc----CceeEEEEeec
Q psy10362 196 SGPSAGKPPADYSAYG-TYAQYQQRYFSRY----GEVIDCVVMKN 235 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~-~te~~L~~~F~~~----G~I~~v~i~~d 235 (388)
.+...++|-|=||.|+ +...||...|+.| |.|..|.|+..
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 3566788999999997 7778899998876 67888888664
No 227
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=35.02 E-value=48 Score=27.74 Aligned_cols=46 Identities=9% Similarity=0.146 Sum_probs=27.5
Q ss_pred CcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhH-HHHHH
Q psy10362 212 TYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNV-GVVIQ 260 (388)
Q Consensus 212 ~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A-~~Ai~ 260 (388)
++.++|++.|+.|.++ +++.+.++. -++|+++|+|.....- ..|++
T Consensus 29 ~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 3557899999999876 577777643 5788999999765443 23444
No 228
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=33.13 E-value=47 Score=24.67 Aligned_cols=19 Identities=21% Similarity=0.651 Sum_probs=15.7
Q ss_pred HHHHHHhhcCCCeeEEEEe
Q psy10362 305 TDLRTFFNRYGKVMEVVIM 323 (388)
Q Consensus 305 e~L~~~F~~~G~I~~v~v~ 323 (388)
.+|+++|+..|.|.-+.|-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5899999999998776554
No 229
>KOG2295|consensus
Probab=32.33 E-value=12 Score=39.39 Aligned_cols=62 Identities=8% Similarity=-0.092 Sum_probs=46.2
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN 261 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~ 261 (388)
.++|||.|++++++-.+|..+++.+--+.++.+-.+....+-.-+..|+|+---+...|+.+
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~a 292 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWA 292 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHH
Confidence 56799999999999999999999887667666544433333444678889776666666665
No 230
>KOG1924|consensus
Probab=31.37 E-value=3e+02 Score=30.71 Aligned_cols=12 Identities=33% Similarity=0.415 Sum_probs=6.6
Q ss_pred eeeEeeecCCCC
Q psy10362 18 QQVEIKKAEPRD 29 (388)
Q Consensus 18 ~~~~~~~~~~~~ 29 (388)
-|+|++|-|+..
T Consensus 493 ~qael~k~e~Ki 504 (1102)
T KOG1924|consen 493 AQAELQKHEEKI 504 (1102)
T ss_pred HHHHHHHhhhhc
Confidence 456666665443
No 231
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=30.69 E-value=1.1e+02 Score=22.82 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=14.9
Q ss_pred HHHHHHHhccCceeEEEE
Q psy10362 215 QYQQRYFSRYGEVIDCVV 232 (388)
Q Consensus 215 ~~L~~~F~~~G~I~~v~i 232 (388)
++|+++|+..|+|.-+.|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999865554
No 232
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=29.62 E-value=2e+02 Score=22.59 Aligned_cols=54 Identities=15% Similarity=0.055 Sum_probs=36.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-CC-CeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 292 KVFLGGLPSNVTETDLRTFFNR-YG-KVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 292 ~lfV~nLp~~vtee~L~~~F~~-~G-~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
+.|+-.++...+..+|++.++. |+ .|..|+.+.-+ ...--|||++.+...+.+.
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~~KKA~V~L~~g~~A~~v 77 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KGEKKAYVKLAEEYDAEEI 77 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CCcEEEEEEeCCCCcHHHH
Confidence 4455567889999999999994 55 46777666543 3445588888655444433
No 233
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=29.25 E-value=1.5e+02 Score=20.93 Aligned_cols=46 Identities=9% Similarity=0.037 Sum_probs=35.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChh
Q psy10362 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELP 341 (388)
Q Consensus 292 ~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~ 341 (388)
+|.|.+|.-.--...|++.+++.-.|.++.+-.. ...+-|.|+...
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~----~~~v~v~~~~~~ 46 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE----TKTVTVTYDPDK 46 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT----TTEEEEEESTTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC----CCEEEEEEecCC
Confidence 4677777777778899999999999999988754 355777775443
No 234
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=28.57 E-value=15 Score=29.29 Aligned_cols=25 Identities=4% Similarity=-0.282 Sum_probs=21.2
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHh
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFS 222 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~ 222 (388)
...++|.|.|||..++|++|++.++
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 4568899999999999999997653
No 235
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=28.42 E-value=2.3e+02 Score=21.92 Aligned_cols=53 Identities=15% Similarity=0.088 Sum_probs=35.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-CC-CeeEEEEecCCCCCeeEEEEEcCChhhHHH
Q psy10362 292 KVFLGGLPSNVTETDLRTFFNR-YG-KVMEVVIMSPRTIRAGITRVPTQELPVQKE 345 (388)
Q Consensus 292 ~lfV~nLp~~vtee~L~~~F~~-~G-~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~ 345 (388)
+-|+-.++...+..+|++.++. |+ .|..|+.+.-+ ...--|||++.+...+.+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~~~KKA~VtL~~g~~a~~ 69 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-RGEKKAYVKLAEEYAAEE 69 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CCceEEEEEECCCCcHHH
Confidence 4566668899999999999984 54 46666655443 334457888855544433
No 236
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=28.28 E-value=95 Score=29.06 Aligned_cols=12 Identities=33% Similarity=0.255 Sum_probs=4.9
Q ss_pred CcCCCCCCCCCC
Q psy10362 76 NMMQGYQGWGST 87 (388)
Q Consensus 76 ~~~~g~~g~~~~ 87 (388)
.++..+++++..
T Consensus 214 g~~~~~~~~g~~ 225 (238)
T PF02084_consen 214 GGGGMYQGMGMG 225 (238)
T ss_pred CCCCCCCCCCCC
Confidence 334444444433
No 237
>KOG0156|consensus
Probab=27.94 E-value=1.1e+02 Score=32.19 Aligned_cols=60 Identities=12% Similarity=0.026 Sum_probs=47.9
Q ss_pred CCcccCCCcCcH---HHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCC
Q psy10362 203 PPADYSAYGTYA---QYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTI 271 (388)
Q Consensus 203 vfVgnLp~~~te---~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i 271 (388)
-+||||+.-... ..|.++=++||+|..+++-.. -.|.-.+.+.|+.|+..++..+.+|..
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 578998765444 456666679999998888553 368889999999999999999999986
No 238
>PF15547 DUF4654: Domain of unknown function (DUF4654)
Probab=27.81 E-value=29 Score=29.42 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=14.3
Q ss_pred CceEEEEeeeceeeEe
Q psy10362 7 GLTYYITCFLLQQVEI 22 (388)
Q Consensus 7 ~~~~~~~~~~~~~~~~ 22 (388)
-|||.|.|-.||||-+
T Consensus 11 HlTFvIDCa~GKqlsL 26 (138)
T PF15547_consen 11 HLTFVIDCARGKQLSL 26 (138)
T ss_pred ceEEEEEcCCCCcccc
Confidence 4899999999999976
No 239
>KOG4410|consensus
Probab=27.65 E-value=79 Score=30.73 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=35.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCe-eEEEEecCCCCCeeEEEEEcCCh
Q psy10362 291 PKVFLGGLPSNVTETDLRTFFNRYGKV-MEVVIMSPRTIRAGITRVPTQEL 340 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~~~F~~~G~I-~~v~v~~d~~~~rG~aFV~F~~~ 340 (388)
+.|+|.||+.++.-.||+..+++.+.+ .++... -+.+-||+.|-+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK----GHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee----cCCcceeEecCCc
Confidence 469999999999999999999977543 333333 4677799999554
No 240
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=26.92 E-value=97 Score=25.18 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=30.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCC
Q psy10362 291 PKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQE 339 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~ 339 (388)
.-|||++++..|-|..-..+-+.++.=..+-+..++ +..||.|-++.+
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~-~eqG~~~~t~G~ 75 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATN-TESGFEFQTFGE 75 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCC-CCCCcEEEecCC
Confidence 469999999888776555555555443333344444 455999988743
No 241
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=26.85 E-value=1.8e+02 Score=24.02 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=31.5
Q ss_pred HHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh
Q psy10362 215 QYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN 261 (388)
Q Consensus 215 ~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~ 261 (388)
.+|.++++.+| |.+-.|+.|..+ +.=|+++++.|.+..-++|.+
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~--n~lFgy~E~~d~~a~m~~~a~ 70 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEE--NLLFGYWEYEDFEADMAKMAE 70 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCc--ccEEEEEEEcChHHHHHHHhC
Confidence 46777888887 677777777433 344999999977776666654
No 242
>smart00157 PRP Major prion protein. The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.
Probab=26.84 E-value=2.5e+02 Score=25.64 Aligned_cols=7 Identities=29% Similarity=0.458 Sum_probs=2.6
Q ss_pred HHHhccC
Q psy10362 219 RYFSRYG 225 (388)
Q Consensus 219 ~~F~~~G 225 (388)
+..-+|+
T Consensus 129 e~myrYp 135 (217)
T smart00157 129 ENMYRYP 135 (217)
T ss_pred HHHHhCC
Confidence 3333343
No 243
>PF14893 PNMA: PNMA
Probab=26.50 E-value=54 Score=32.63 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=29.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhc----CCCeeEEEEecCCCCCeeEEEEEc
Q psy10362 290 FPKVFLGGLPSNVTETDLRTFFNR----YGKVMEVVIMSPRTIRAGITRVPT 337 (388)
Q Consensus 290 ~~~lfV~nLp~~vtee~L~~~F~~----~G~I~~v~v~~d~~~~rG~aFV~F 337 (388)
.+-|.|.+||.++++++|.+.+.. .|...-+--+..+....--++|+|
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~ 69 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEF 69 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeec
Confidence 467999999999999999887763 333322211111223445566666
No 244
>KOG2891|consensus
Probab=26.20 E-value=50 Score=31.86 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=27.4
Q ss_pred CCCCCCCcccCCCc------------CcHHHHHHHHhccCceeEEEEe
Q psy10362 198 PSAGKPPADYSAYG------------TYAQYQQRYFSRYGEVIDCVVM 233 (388)
Q Consensus 198 ~~~~~vfVgnLp~~------------~te~~L~~~F~~~G~I~~v~i~ 233 (388)
..+.|||+..||-. -+|+-|+..|+.||+|..|.|.
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 34567888888731 3566799999999999988773
No 245
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=26.16 E-value=56 Score=24.60 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=40.7
Q ss_pred HHHHHHHhccC-ceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCC
Q psy10362 215 QYQQRYFSRYG-EVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277 (388)
Q Consensus 215 ~~L~~~F~~~G-~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~ 277 (388)
++|.+-|...| +|.+|.-++.+.+...--.-||+.+...+...++. =..|.++.+.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~--Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYK--IKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceee--hHhhCCeEEEEecCC
Confidence 46777777777 77888888877677776778888877665433332 124666777766554
No 246
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=25.98 E-value=1.5e+02 Score=26.95 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=28.0
Q ss_pred CCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHH
Q psy10362 302 VTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATA 348 (388)
Q Consensus 302 vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~ 348 (388)
-..++|+++|..|..+..+.+++ +-+-.+|.|.+...+.++..
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~----sFrRi~v~f~~~~~A~~~r~ 49 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLK----SFRRIRVVFESPESAQRARQ 49 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEET----TTTEEEEE-SSTTHHHHHHH
T ss_pred hhHHHHHHHHHhcCCceEEEEcC----CCCEEEEEeCCHHHHHHHHH
Confidence 34588999999999999999984 44457888866655554443
No 247
>smart00833 CobW_C Cobalamin synthesis protein cobW C-terminal domain. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis PUBMED:12869542. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression PUBMED:7765511.
Probab=25.23 E-value=1.3e+02 Score=22.96 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=16.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcC
Q psy10362 290 FPKVFLGGLPSNVTETDLRTFFNRY 314 (388)
Q Consensus 290 ~~~lfV~nLp~~vtee~L~~~F~~~ 314 (388)
.+-|+|+. .++++.|++.|..+
T Consensus 70 ~~lV~IG~---~l~~~~l~~~l~~~ 91 (92)
T smart00833 70 TRLVFIGR---DLDEEAIRAALDAC 91 (92)
T ss_pred eEEEEEeC---CCCHHHHHHHHHHh
Confidence 35677765 58889999988753
No 248
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=24.86 E-value=2.1e+02 Score=20.15 Aligned_cols=53 Identities=13% Similarity=0.014 Sum_probs=36.7
Q ss_pred CCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCCh----HhHHHHHHh
Q psy10362 203 PPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADP----NNVGVVIQN 261 (388)
Q Consensus 203 vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~----~~A~~Ai~~ 261 (388)
+.|.+|.=.--...|++.+...-.|.++.+-.... ..-|.|... ++..++|+.
T Consensus 2 ~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~------~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 2 FKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETK------TVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTT------EEEEEESTTTSCHHHHHHHHHH
T ss_pred EEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCC------EEEEEEecCCCCHHHHHHHHHH
Confidence 44556665666678899999888888888866532 677888755 455555554
No 249
>smart00157 PRP Major prion protein. The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.
Probab=23.74 E-value=2.7e+02 Score=25.44 Aligned_cols=8 Identities=0% Similarity=0.086 Sum_probs=3.2
Q ss_pred CCCCCHHH
Q psy10362 299 PSNVTETD 306 (388)
Q Consensus 299 p~~vtee~ 306 (388)
+..++.+.
T Consensus 144 ~~~~s~~~ 151 (217)
T smart00157 144 DQYSNQNN 151 (217)
T ss_pred ccccchhh
Confidence 33344443
No 250
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=22.11 E-value=86 Score=23.42 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=24.3
Q ss_pred CHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEE
Q psy10362 303 TETDLRTFFNRYGKVMEVVIMSPRTIRAGITRV 335 (388)
Q Consensus 303 tee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV 335 (388)
-|.+|.++|-+-..|+++.|+..+.-.+|-+||
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 456788888888999999999765444555554
No 251
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=21.56 E-value=65 Score=21.26 Aligned_cols=16 Identities=19% Similarity=0.166 Sum_probs=10.4
Q ss_pred CcCcHHHHHHHHhccC
Q psy10362 210 YGTYAQYQQRYFSRYG 225 (388)
Q Consensus 210 ~~~te~~L~~~F~~~G 225 (388)
.++++++|++.|.++.
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4789999999998764
No 252
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=20.52 E-value=1.5e+02 Score=23.42 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=30.8
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeC
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFA 250 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~ 250 (388)
.-|||++++..+.|.-...+.+..++=.-+-+..+. ...||.|-++-
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~---neqG~~~~t~G 72 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN---NEQGFDFRTLG 72 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC---CCCCEEEEEeC
Confidence 459999999998887666666655443333333332 26689998873
No 253
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=20.34 E-value=1.9e+02 Score=22.73 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=21.5
Q ss_pred ceeEEEEeecCCCCCceeEEEEEeCC
Q psy10362 226 EVIDCVVMKNNETGRSRGFGFVTFAD 251 (388)
Q Consensus 226 ~I~~v~i~~dk~tg~skG~gFV~F~~ 251 (388)
+|++|+|..-...++-|+||=|+|++
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47888888776668999999999987
No 254
>PF14893 PNMA: PNMA
Probab=20.21 E-value=1.3e+02 Score=29.95 Aligned_cols=25 Identities=0% Similarity=-0.322 Sum_probs=21.3
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHh
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFS 222 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~ 222 (388)
+..|.|.|.+||.++++++|++.+.
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~ 40 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQ 40 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHH
Confidence 4457799999999999999988764
No 255
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=20.17 E-value=3.4e+02 Score=19.42 Aligned_cols=46 Identities=11% Similarity=0.176 Sum_probs=29.7
Q ss_pred HHHHHHHhccC-ceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCC
Q psy10362 215 QYQQRYFSRYG-EVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPH 264 (388)
Q Consensus 215 ~~L~~~F~~~G-~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~ 264 (388)
.+|.++|.+.+ .|.++.+.... . +.+--+.+++.+.|.++|+..+.
T Consensus 16 a~v~~~l~~~~inI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~~~G~ 62 (66)
T cd04908 16 AAVTEILSEAGINIRALSIADTS---E-FGILRLIVSDPDKAKEALKEAGF 62 (66)
T ss_pred HHHHHHHHHCCCCEEEEEEEecC---C-CCEEEEEECCHHHHHHHHHHCCC
Confidence 56778887776 56676654432 1 35555667777788888876543
No 256
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=20.16 E-value=59 Score=27.30 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=31.2
Q ss_pred CCCcCcHHHHHHHHhc---cCceeEEEEeecCCCCCceeEEEEEeCChHh
Q psy10362 208 SAYGTYAQYQQRYFSR---YGEVIDCVVMKNNETGRSRGFGFVTFADPNN 254 (388)
Q Consensus 208 Lp~~~te~~L~~~F~~---~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~ 254 (388)
-|+.+|..+|+++|+. |--|.+-.|.+|---.-+-..||..|.....
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~~ 131 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQF 131 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccchh
Confidence 5789999999999973 4445555566553222233478988876543
Done!