Query psy10362
Match_columns 388
No_of_seqs 281 out of 2076
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 15:58:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 6.7E-31 2.3E-35 241.4 10.9 146 198-346 13-159 (213)
2 1l3k_A Heterogeneous nuclear r 100.0 1.4E-30 4.9E-35 233.9 12.0 150 197-346 10-162 (196)
3 2qfj_A FBP-interacting repress 100.0 1.4E-28 4.7E-33 224.2 15.3 147 198-344 26-181 (216)
4 2cjk_A Nuclear polyadenylated 100.0 5.8E-30 2E-34 224.1 5.3 141 199-345 2-144 (167)
5 1fxl_A Paraneoplastic encephal 100.0 1.7E-28 5.7E-33 214.1 14.3 136 200-340 2-140 (167)
6 1b7f_A Protein (SXL-lethal pro 100.0 1.4E-28 4.9E-33 215.2 13.5 137 199-340 2-141 (168)
7 3nmr_A Cugbp ELAV-like family 100.0 3.2E-28 1.1E-32 214.2 13.9 150 199-355 2-158 (175)
8 3md3_A Nuclear and cytoplasmic 100.0 4.3E-28 1.5E-32 211.2 12.6 137 201-341 1-140 (166)
9 3tyt_A Heterogeneous nuclear r 99.9 6.9E-28 2.4E-32 220.9 12.1 155 199-364 3-193 (205)
10 3pgw_A U1-A; protein-RNA compl 99.9 6.9E-26 2.4E-30 215.6 15.4 139 196-340 5-254 (282)
11 2adc_A Polypyrimidine tract-bi 99.9 7.1E-26 2.4E-30 210.1 14.5 137 197-341 31-200 (229)
12 2yh0_A Splicing factor U2AF 65 99.9 4.5E-27 1.5E-31 211.3 5.1 142 199-346 3-172 (198)
13 3smz_A Protein raver-1, ribonu 99.9 1.1E-25 3.8E-30 214.4 14.4 141 199-341 94-237 (284)
14 1fje_B Nucleolin RBD12, protei 99.9 5.2E-27 1.8E-31 207.3 3.7 139 196-341 9-147 (175)
15 2g4b_A Splicing factor U2AF 65 99.9 1.6E-25 5.6E-30 196.7 12.5 137 199-346 3-152 (172)
16 1qm9_A Polypyrimidine tract-bi 99.9 1.9E-25 6.6E-30 201.5 11.6 133 200-340 3-168 (198)
17 2ghp_A U4/U6 snRNA-associated 99.9 2.3E-25 7.8E-30 213.0 9.8 141 199-340 116-264 (292)
18 3sde_A Paraspeckle component 1 99.9 8.9E-25 3.1E-29 206.7 12.8 132 198-346 20-153 (261)
19 2ghp_A U4/U6 snRNA-associated 99.9 6.5E-25 2.2E-29 209.9 10.3 137 196-346 37-175 (292)
20 3smz_A Protein raver-1, ribonu 99.9 5.9E-24 2E-28 202.4 11.4 130 199-346 21-153 (284)
21 4f25_A Polyadenylate-binding p 99.8 1.4E-21 4.9E-26 162.4 5.9 105 200-306 5-113 (115)
22 2cpz_A CUG triplet repeat RNA- 99.8 2.9E-19 9.8E-24 147.9 11.2 89 194-282 19-108 (115)
23 4fxv_A ELAV-like protein 1; RN 99.8 1.3E-19 4.5E-24 146.8 6.3 80 199-278 18-98 (99)
24 2dh8_A DAZ-associated protein 99.8 1.3E-18 4.3E-23 141.6 11.1 87 196-282 12-98 (105)
25 2dgs_A DAZ-associated protein 99.8 1.7E-18 5.8E-23 139.3 9.5 86 197-282 7-92 (99)
26 3s8s_A Histone-lysine N-methyl 99.8 6.3E-19 2.1E-23 145.6 6.9 82 198-279 4-86 (110)
27 1x5u_A Splicing factor 3B subu 99.7 2.2E-18 7.6E-23 140.0 8.7 87 195-281 10-97 (105)
28 1x4h_A RNA-binding protein 28; 99.7 3.7E-18 1.3E-22 140.0 9.8 87 196-282 11-104 (111)
29 2dgo_A Cytotoxic granule-assoc 99.7 3.3E-18 1.1E-22 141.4 9.3 87 196-282 11-98 (115)
30 2cqg_A TDP-43, TAR DNA-binding 99.7 5.4E-18 1.9E-22 137.3 10.1 87 195-282 10-96 (103)
31 2dnm_A SRP46 splicing factor; 99.7 2.6E-18 9E-23 139.2 8.0 86 196-281 9-95 (103)
32 3p5t_L Cleavage and polyadenyl 99.7 1.6E-18 5.5E-23 137.3 6.5 80 201-280 2-84 (90)
33 2do4_A Squamous cell carcinoma 99.7 4.9E-18 1.7E-22 136.8 9.5 84 196-280 13-97 (100)
34 3s7r_A Heterogeneous nuclear r 99.7 1.2E-18 4.2E-23 136.7 5.7 81 196-276 7-87 (87)
35 2cq0_A Eukaryotic translation 99.7 2.1E-18 7.1E-23 139.8 7.1 87 196-282 11-98 (103)
36 2cqd_A RNA-binding region cont 99.7 3.1E-18 1.1E-22 141.9 8.2 85 196-280 13-97 (116)
37 2dnz_A Probable RNA-binding pr 99.7 5.1E-18 1.7E-22 135.3 9.0 84 198-281 3-87 (95)
38 2e5h_A Zinc finger CCHC-type a 99.7 2E-18 7E-23 137.3 6.6 80 198-277 14-94 (94)
39 2kxn_B Transformer-2 protein h 99.7 1E-17 3.6E-22 142.1 11.4 85 196-280 42-127 (129)
40 2lxi_A RNA-binding protein 10; 99.7 3.4E-19 1.2E-23 141.9 2.0 82 200-281 1-85 (91)
41 2dhg_A TRNA selenocysteine ass 99.7 2E-17 6.8E-22 134.1 12.4 85 197-282 6-93 (104)
42 2khc_A Testis-specific RNP-typ 99.7 4.8E-18 1.6E-22 141.0 8.9 82 195-276 35-117 (118)
43 2dnh_A Bruno-like 5, RNA bindi 99.7 9.2E-18 3.1E-22 136.3 10.3 85 197-282 12-100 (105)
44 1x5s_A Cold-inducible RNA-bind 99.7 3.3E-18 1.1E-22 138.3 7.6 84 198-281 10-94 (102)
45 2cqc_A Arginine/serine-rich sp 99.7 3.7E-18 1.2E-22 136.0 7.7 82 197-278 12-94 (95)
46 2cph_A RNA binding motif prote 99.7 9.5E-18 3.2E-22 136.6 10.1 87 195-281 10-99 (107)
47 2dgp_A Bruno-like 4, RNA bindi 99.7 4.2E-18 1.4E-22 138.6 7.8 86 196-281 9-98 (106)
48 2d9p_A Polyadenylate-binding p 99.7 1.2E-17 4.1E-22 135.3 10.3 86 195-282 10-96 (103)
49 2dng_A Eukaryotic translation 99.7 4.8E-18 1.6E-22 137.8 7.9 85 196-281 11-95 (103)
50 1whw_A Hypothetical protein ri 99.7 4.2E-18 1.4E-22 136.9 7.1 85 198-282 6-91 (99)
51 2div_A TRNA selenocysteine ass 99.7 6.9E-18 2.4E-22 135.6 8.3 84 197-280 6-95 (99)
52 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.9E-18 9.8E-23 138.6 5.7 85 198-282 10-95 (102)
53 2la6_A RNA-binding protein FUS 99.7 8.7E-18 3E-22 135.2 8.4 83 195-277 8-99 (99)
54 1wg5_A Heterogeneous nuclear r 99.7 8.1E-18 2.8E-22 137.1 8.2 83 198-281 13-96 (104)
55 3bs9_A Nucleolysin TIA-1 isofo 99.7 3E-18 1E-22 134.2 5.4 82 198-279 4-86 (87)
56 2cpf_A RNA binding motif prote 99.7 8.5E-18 2.9E-22 134.8 7.7 85 198-282 3-91 (98)
57 3lqv_A PRE-mRNA branch site pr 99.7 2.3E-18 7.9E-23 142.3 4.5 103 198-316 6-109 (115)
58 1wez_A HnRNP H', FTP-3, hetero 99.7 4.5E-18 1.5E-22 138.4 6.0 81 198-280 13-93 (102)
59 2jrs_A RNA-binding protein 39; 99.7 1.4E-17 4.8E-22 136.8 9.0 84 196-279 22-106 (108)
60 2m2b_A RNA-binding protein 10; 99.7 9.1E-18 3.1E-22 142.4 8.1 84 196-280 19-109 (131)
61 2cpe_A RNA-binding protein EWS 99.7 9E-18 3.1E-22 138.3 7.6 87 196-282 11-106 (113)
62 2cq3_A RNA-binding protein 9; 99.7 1.8E-17 6.2E-22 134.2 9.2 87 195-283 10-97 (103)
63 1wi8_A EIF-4B, eukaryotic tran 99.7 6.7E-18 2.3E-22 137.2 6.6 85 197-282 12-97 (104)
64 3mdf_A Peptidyl-prolyl CIS-tra 99.7 4.5E-18 1.6E-22 132.6 5.2 80 198-277 5-85 (85)
65 2do0_A HnRNP M, heterogeneous 99.7 2.7E-17 9.1E-22 135.6 10.1 82 197-279 12-94 (114)
66 2rs2_A Musashi-1, RNA-binding 99.7 5E-18 1.7E-22 139.6 5.4 86 196-281 21-106 (109)
67 2ywk_A Putative RNA-binding pr 99.7 7.1E-18 2.4E-22 134.4 6.1 80 197-277 13-93 (95)
68 2lkz_A RNA-binding protein 5; 99.7 1.8E-18 6.2E-23 139.2 2.4 81 198-278 7-94 (95)
69 1p27_B RNA-binding protein 8A; 99.7 1.2E-17 4.1E-22 135.9 7.2 82 198-279 21-103 (106)
70 1x4a_A Splicing factor, argini 99.7 3.3E-17 1.1E-21 134.2 9.8 84 195-281 17-101 (109)
71 2kn4_A Immunoglobulin G-bindin 99.7 2.7E-17 9.4E-22 143.3 9.9 114 229-344 2-126 (158)
72 3md1_A Nuclear and cytoplasmic 99.7 9.1E-18 3.1E-22 130.3 6.1 79 201-279 2-81 (83)
73 2mss_A Protein (musashi1); RNA 99.7 5.9E-18 2E-22 129.0 5.0 75 202-276 1-75 (75)
74 2hvz_A Splicing factor, argini 99.7 5.2E-18 1.8E-22 136.9 4.9 94 201-299 1-100 (101)
75 1x5t_A Splicing factor 3B subu 99.7 6.7E-18 2.3E-22 134.8 5.3 85 198-282 3-89 (96)
76 2cqp_A RNA-binding protein 12; 99.7 5.1E-18 1.7E-22 136.2 4.2 82 198-279 13-95 (98)
77 2dgv_A HnRNP M, heterogeneous 99.7 4.4E-17 1.5E-21 129.0 9.6 81 198-280 6-87 (92)
78 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.2E-17 7.6E-22 133.7 8.0 84 196-281 11-95 (103)
79 1u6f_A Tcubp1, RNA-binding pro 99.7 1.6E-17 5.6E-22 141.8 7.5 87 195-281 37-124 (139)
80 2x1f_A MRNA 3'-END-processing 99.7 9.7E-18 3.3E-22 134.2 5.6 81 200-280 2-83 (96)
81 1uaw_A Mouse-musashi-1; RNP-ty 99.7 8.5E-18 2.9E-22 128.6 4.9 76 201-276 1-76 (77)
82 1x4e_A RNA binding motif, sing 99.7 9.6E-18 3.3E-22 131.0 5.2 80 198-277 3-83 (85)
83 2fy1_A RNA-binding motif prote 99.7 2.9E-17 9.8E-22 136.6 8.4 84 197-281 4-88 (116)
84 2ek1_A RNA-binding protein 12; 99.7 4.1E-18 1.4E-22 135.8 2.9 80 198-277 13-93 (95)
85 2lea_A Serine/arginine-rich sp 99.7 1.3E-17 4.5E-22 142.5 6.1 87 195-281 42-129 (135)
86 1s79_A Lupus LA protein; RRM, 99.7 1.6E-17 5.5E-22 135.5 6.2 80 198-278 9-88 (103)
87 1iqt_A AUF1, heterogeneous nuc 99.7 6.4E-18 2.2E-22 128.7 3.5 75 202-276 1-75 (75)
88 1x4b_A Heterogeneous nuclear r 99.7 1.4E-17 4.7E-22 138.0 5.8 85 198-282 25-109 (116)
89 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.2E-17 4E-22 135.0 5.0 84 195-279 14-98 (100)
90 1sjq_A Polypyrimidine tract-bi 99.7 3.5E-17 1.2E-21 133.9 7.7 80 198-283 14-96 (105)
91 1p1t_A Cleavage stimulation fa 99.7 1.1E-17 3.8E-22 135.5 4.7 83 198-280 6-89 (104)
92 2cpy_A RNA-binding protein 12; 99.7 5.4E-18 1.8E-22 140.4 2.8 83 197-280 12-95 (114)
93 3ns6_A Eukaryotic translation 99.7 9.1E-18 3.1E-22 135.8 3.9 80 200-279 6-93 (100)
94 1wel_A RNA-binding protein 12; 99.7 1.6E-17 5.6E-22 139.4 5.4 82 197-278 22-103 (124)
95 3ucg_A Polyadenylate-binding p 99.7 1.9E-17 6.7E-22 130.1 5.5 81 199-279 5-85 (89)
96 3n9u_C Cleavage and polyadenyl 99.7 2.2E-17 7.5E-22 144.7 6.0 82 198-279 53-137 (156)
97 2hgm_A HNRPF protein, heteroge 99.7 1.5E-17 5.1E-22 140.7 4.6 80 198-279 40-121 (126)
98 2dis_A Unnamed protein product 99.7 4.3E-17 1.5E-21 133.2 6.9 84 198-281 6-94 (109)
99 2db1_A Heterogeneous nuclear r 99.7 1.3E-17 4.5E-22 139.1 3.6 82 197-279 14-98 (118)
100 3ex7_B RNA-binding protein 8A; 99.7 3.8E-17 1.3E-21 137.2 6.2 85 197-281 19-104 (126)
101 1oo0_B CG8781-PA, drosophila Y 99.7 2.4E-17 8.2E-22 135.1 4.8 84 197-280 23-107 (110)
102 2cq4_A RNA binding motif prote 99.7 1.8E-17 6.2E-22 136.8 4.1 82 198-279 23-104 (114)
103 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 4.6E-17 1.6E-21 138.6 6.7 80 197-276 60-140 (140)
104 1x5o_A RNA binding motif, sing 99.7 2E-16 6.7E-21 130.4 10.1 76 196-272 21-97 (114)
105 3ulh_A THO complex subunit 4; 99.7 4.3E-17 1.5E-21 132.8 5.7 79 198-277 27-106 (107)
106 2dnn_A RNA-binding protein 12; 99.7 1.6E-17 5.3E-22 137.1 3.1 81 197-279 13-93 (109)
107 2hgn_A Heterogeneous nuclear r 99.7 2.6E-17 9.1E-22 141.5 4.3 81 198-280 44-124 (139)
108 2dgw_A Probable RNA-binding pr 99.7 5.4E-17 1.9E-21 128.4 5.8 81 197-279 7-87 (91)
109 2ki2_A SS-DNA binding protein 99.7 1.9E-17 6.5E-22 130.7 3.0 79 201-280 2-81 (90)
110 1h2v_Z 20 kDa nuclear CAP bind 99.7 9.1E-17 3.1E-21 140.0 7.5 83 198-280 37-120 (156)
111 2kt5_A RNA and export factor-b 99.7 3.6E-16 1.2E-20 131.0 10.7 84 197-281 32-116 (124)
112 2cpi_A CCR4-NOT transcription 99.7 9.7E-17 3.3E-21 132.2 7.0 84 197-280 12-102 (111)
113 2dgx_A KIAA0430 protein; RRM d 99.7 5.1E-17 1.7E-21 130.3 5.1 80 198-280 7-91 (96)
114 2fc8_A NCL protein; structure 99.7 1.5E-16 5.1E-21 128.4 7.9 85 195-282 10-95 (102)
115 2hgl_A HNRPF protein, heteroge 99.7 2.9E-17 1E-21 140.7 3.9 81 197-278 41-124 (136)
116 2lmi_A GRSF-1, G-rich sequence 99.7 5.1E-17 1.7E-21 133.0 5.2 82 197-279 8-92 (107)
117 4a8x_A RNA-binding protein wit 99.7 3.9E-17 1.3E-21 128.0 4.1 81 199-279 3-85 (88)
118 2dha_A FLJ20171 protein; RRM d 99.7 7.4E-18 2.5E-22 142.0 -0.2 80 198-278 21-104 (123)
119 2jwn_A Embryonic polyadenylate 99.7 8.7E-17 3E-21 134.6 6.2 82 199-280 35-116 (124)
120 1wex_A Hypothetical protein (r 99.7 2E-16 7E-21 129.2 8.2 81 197-283 12-95 (104)
121 3q2s_C Cleavage and polyadenyl 99.6 8.4E-17 2.9E-21 149.6 6.3 81 199-279 67-150 (229)
122 2xs2_A Deleted in azoospermia- 99.6 2.1E-17 7E-22 133.7 1.7 81 198-280 7-87 (102)
123 1fj7_A Nucleolin RBD1, protein 99.6 2.2E-17 7.7E-22 133.2 1.6 82 198-280 15-96 (101)
124 1why_A Hypothetical protein ri 99.6 4.4E-16 1.5E-20 124.7 9.2 77 198-280 15-94 (97)
125 2cq1_A PTB-like protein L; RRM 99.6 2.2E-16 7.4E-21 128.4 7.3 81 197-283 12-95 (101)
126 2kn4_A Immunoglobulin G-bindin 99.6 1.3E-16 4.5E-21 138.9 6.4 83 198-280 68-151 (158)
127 2krb_A Eukaryotic translation 99.6 2E-16 6.9E-21 122.6 6.6 72 201-274 2-81 (81)
128 2fc9_A NCL protein; structure 99.6 1.5E-16 5.2E-21 128.3 5.9 82 196-281 11-93 (101)
129 2err_A Ataxin-2-binding protei 99.6 1.1E-16 3.7E-21 131.5 4.7 83 195-279 24-107 (109)
130 1x4c_A Splicing factor, argini 99.6 3.5E-16 1.2E-20 128.1 7.5 77 198-281 13-95 (108)
131 2dnq_A RNA-binding protein 4B; 99.6 5.3E-16 1.8E-20 122.5 8.2 78 197-282 5-83 (90)
132 2wbr_A GW182, gawky, LD47780P; 99.6 2E-16 6.8E-21 124.7 5.5 70 201-276 8-78 (89)
133 2ad9_A Polypyrimidine tract-bi 99.6 4.5E-16 1.5E-20 130.2 7.4 81 197-283 28-111 (119)
134 2nlw_A Eukaryotic translation 99.6 2.8E-16 9.6E-21 128.1 6.0 80 198-279 13-100 (105)
135 2cpj_A Non-POU domain-containi 99.6 5.4E-16 1.9E-20 124.7 7.5 78 197-280 12-90 (99)
136 2lcw_A RNA-binding protein FUS 99.4 3.3E-17 1.1E-21 135.7 0.0 84 198-281 5-97 (116)
137 2e5j_A Methenyltetrahydrofolat 99.6 8.1E-16 2.8E-20 123.2 7.6 78 197-279 16-94 (97)
138 2la4_A Nuclear and cytoplasmic 99.6 5.8E-16 2E-20 124.8 6.7 75 198-278 25-100 (101)
139 1rk8_A CG8781-PA, CG8781-PA pr 99.6 4.1E-16 1.4E-20 137.4 6.0 84 198-281 70-154 (165)
140 2cpx_A Hypothetical protein FL 99.6 2E-16 6.8E-21 130.5 3.7 85 198-282 23-108 (115)
141 2i2y_A Fusion protein consists 99.6 1.1E-15 3.6E-20 132.3 8.0 102 239-344 10-124 (150)
142 2e44_A Insulin-like growth fac 99.6 1.5E-15 5.1E-20 121.2 7.9 79 198-280 13-93 (96)
143 2e5g_A U6 snRNA-specific termi 99.6 2.3E-15 7.8E-20 119.9 8.9 79 198-281 6-84 (94)
144 2ytc_A PRE-mRNA-splicing facto 99.6 1.3E-15 4.5E-20 118.6 7.3 76 196-277 8-85 (85)
145 2a3j_A U1 small nuclear ribonu 99.6 1E-15 3.5E-20 129.6 7.1 80 198-280 27-111 (127)
146 1x4g_A Nucleolysin TIAR; struc 99.6 1.2E-15 3.9E-20 125.0 6.7 80 197-282 22-102 (109)
147 1x4d_A Matrin 3; structural ge 99.6 6.9E-16 2.4E-20 125.7 5.1 77 198-280 13-93 (102)
148 1x4f_A Matrin 3; structural ge 99.6 2.3E-15 8E-20 124.5 8.0 78 197-280 22-103 (112)
149 2dnp_A RNA-binding protein 14; 99.6 1.6E-15 5.6E-20 119.7 6.7 76 197-280 6-82 (90)
150 2f3j_A RNA and export factor b 99.6 1E-15 3.4E-20 136.8 5.8 82 198-280 86-168 (177)
151 2dgt_A RNA-binding protein 30; 99.6 1.4E-15 4.7E-20 120.6 5.7 78 197-282 7-85 (92)
152 2dgu_A Heterogeneous nuclear r 99.6 2.3E-15 7.7E-20 122.0 7.0 77 198-282 9-86 (103)
153 3beg_B Splicing factor, argini 99.6 2E-15 6.9E-20 125.1 6.8 74 198-278 14-88 (115)
154 2cqh_A IGF-II mRNA-binding pro 99.6 1.2E-15 3.9E-20 121.2 4.4 78 198-282 6-86 (93)
155 1l3k_A Heterogeneous nuclear r 99.6 1.9E-15 6.5E-20 134.9 6.2 85 198-282 102-186 (196)
156 3r27_A HnRNP L, heterogeneous 99.6 1.8E-15 6E-20 122.7 5.0 77 198-280 19-98 (100)
157 1wf1_A RNA-binding protein RAL 99.6 3.8E-15 1.3E-19 122.0 7.0 75 198-280 25-101 (110)
158 1nu4_A U1A RNA binding domain; 99.6 6.8E-16 2.3E-20 123.3 2.4 81 197-280 5-90 (97)
159 2dnl_A Cytoplasmic polyadenyla 99.6 1.3E-15 4.4E-20 126.0 3.8 76 198-275 6-84 (114)
160 2jvr_A Nucleolar protein 3; RN 99.6 6.7E-16 2.3E-20 127.7 2.0 77 199-279 27-105 (111)
161 2jvo_A Nucleolar protein 3; nu 99.6 2.5E-15 8.6E-20 123.3 5.2 78 195-280 26-104 (108)
162 2i2y_A Fusion protein consists 99.6 4.6E-15 1.6E-19 128.3 7.1 78 197-279 70-148 (150)
163 2qfj_A FBP-interacting repress 99.5 7.5E-15 2.6E-19 133.0 8.7 84 198-281 123-207 (216)
164 2kvi_A Nuclear polyadenylated 99.5 2.5E-15 8.7E-20 120.2 4.8 77 197-281 7-85 (96)
165 2xnq_A Nuclear polyadenylated 99.5 3.9E-15 1.3E-19 119.7 5.8 76 196-279 18-95 (97)
166 1sjr_A Polypyrimidine tract-bi 99.5 4.6E-15 1.6E-19 130.5 6.5 80 198-281 44-126 (164)
167 2j8a_A Histone-lysine N-methyl 99.5 1.9E-15 6.5E-20 127.1 3.7 76 201-276 3-93 (136)
168 2cjk_A Nuclear polyadenylated 99.5 1.7E-15 5.8E-20 131.8 3.6 80 200-279 87-166 (167)
169 2cpd_A Apobec-1 stimulating pr 99.5 1.1E-14 3.6E-19 117.1 7.9 77 197-281 12-91 (99)
170 3md3_A Nuclear and cytoplasmic 99.5 7.2E-15 2.5E-19 127.2 7.4 81 197-277 84-165 (166)
171 2g4b_A Splicing factor U2AF 65 99.5 8.2E-15 2.8E-19 128.0 7.6 79 198-276 92-171 (172)
172 1x5p_A Negative elongation fac 99.5 1.1E-14 3.9E-19 116.5 7.7 76 198-281 13-89 (97)
173 1fjc_A Nucleolin RBD2, protein 99.5 1.3E-15 4.3E-20 121.6 1.9 79 197-280 13-92 (96)
174 1wf0_A TDP-43, TAR DNA-binding 99.5 1.3E-15 4.3E-20 119.8 1.7 79 198-282 3-81 (88)
175 3d2w_A TAR DNA-binding protein 99.5 1.7E-15 5.7E-20 120.0 1.9 78 197-280 8-85 (89)
176 1whx_A Hypothetical protein ri 99.5 5.3E-15 1.8E-19 121.9 4.5 76 199-280 9-85 (111)
177 4f02_A Polyadenylate-binding p 99.5 2.3E-15 7.8E-20 137.6 2.2 80 199-280 102-182 (213)
178 3pgw_S U1-70K; protein-RNA com 99.5 1E-14 3.5E-19 147.8 7.1 83 198-280 100-183 (437)
179 2yh0_A Splicing factor U2AF 65 99.5 1.6E-14 5.3E-19 129.1 7.2 83 198-280 112-195 (198)
180 1wg1_A KIAA1579 protein, homol 99.5 5.8E-15 2E-19 116.2 3.6 74 199-279 4-78 (88)
181 3egn_A RNA-binding protein 40; 99.5 1.9E-15 6.5E-20 129.7 0.8 84 197-280 42-131 (143)
182 1b7f_A Protein (SXL-lethal pro 99.5 3.7E-14 1.3E-18 123.2 8.5 79 198-276 87-168 (168)
183 2cq2_A Hypothetical protein LO 99.5 8.1E-15 2.8E-19 121.6 3.3 78 197-280 22-107 (114)
184 1fxl_A Paraneoplastic encephal 99.5 5.1E-14 1.8E-18 121.9 7.9 76 198-273 86-162 (167)
185 2hzc_A Splicing factor U2AF 65 99.5 1.2E-14 4.1E-19 113.5 3.3 72 198-275 4-86 (87)
186 2voo_A Lupus LA protein; RNA-b 99.5 2.8E-14 9.6E-19 129.1 6.0 79 200-279 109-187 (193)
187 3zzy_A Polypyrimidine tract-bi 99.5 1.7E-14 5.8E-19 122.3 4.0 78 199-281 27-108 (130)
188 2e5i_A Heterogeneous nuclear r 99.5 8.2E-14 2.8E-18 117.3 7.0 75 201-281 26-104 (124)
189 3nmr_A Cugbp ELAV-like family 99.4 1.1E-13 3.8E-18 120.8 7.3 78 198-276 93-174 (175)
190 2bz2_A Negative elongation fac 99.4 6.5E-14 2.2E-18 117.3 5.5 75 198-280 37-112 (121)
191 2diu_A KIAA0430 protein; struc 99.4 2.1E-13 7.1E-18 108.6 7.7 73 199-281 7-86 (96)
192 4f25_A Polyadenylate-binding p 99.4 2E-13 6.8E-18 112.9 6.7 57 290-346 5-61 (115)
193 2pe8_A Splicing factor 45; RRM 99.4 2.1E-13 7.3E-18 111.4 5.9 81 198-278 6-93 (105)
194 4fxv_A ELAV-like protein 1; RN 99.4 3.8E-13 1.3E-17 108.5 6.9 54 290-343 19-74 (99)
195 2lea_A Serine/arginine-rich sp 99.4 3.1E-13 1.1E-17 115.2 6.0 93 244-342 6-101 (135)
196 3u1l_A PRE-mRNA-splicing facto 99.4 3.2E-13 1.1E-17 126.0 6.0 78 197-280 131-230 (240)
197 2dgs_A DAZ-associated protein 99.4 1.9E-12 6.6E-17 103.6 9.2 61 287-347 7-69 (99)
198 2dit_A HIV TAT specific factor 99.4 1.1E-12 3.6E-17 108.1 7.6 79 198-280 13-103 (112)
199 2dgv_A HnRNP M, heterogeneous 99.4 3.7E-12 1.3E-16 100.3 10.2 56 287-342 5-60 (92)
200 3pgw_S U1-70K; protein-RNA com 99.4 2.7E-13 9.4E-18 137.3 4.3 55 288-342 100-156 (437)
201 1fje_B Nucleolin RBD12, protei 99.3 2.7E-13 9.1E-18 119.0 3.6 77 198-279 97-174 (175)
202 1sjq_A Polypyrimidine tract-bi 99.3 1.5E-12 5.3E-17 106.3 7.8 57 287-347 13-69 (105)
203 2cq3_A RNA-binding protein 9; 99.3 4.4E-12 1.5E-16 102.2 10.2 61 286-346 11-71 (103)
204 3pgw_A U1-A; protein-RNA compl 99.3 4.7E-12 1.6E-16 119.8 11.0 77 196-277 203-281 (282)
205 3s8s_A Histone-lysine N-methyl 99.3 2.5E-12 8.7E-17 105.7 7.9 58 288-345 4-63 (110)
206 1wex_A Hypothetical protein (r 99.3 1.6E-11 5.4E-16 100.1 12.5 79 287-369 12-93 (104)
207 2ad9_A Polypyrimidine tract-bi 99.3 8.9E-12 3.1E-16 104.0 11.2 78 288-369 29-109 (119)
208 2cqd_A RNA-binding region cont 99.3 3.2E-12 1.1E-16 105.4 8.3 61 286-346 13-75 (116)
209 2cpz_A CUG triplet repeat RNA- 99.3 6.6E-12 2.2E-16 103.3 10.1 60 287-346 22-83 (115)
210 2hgn_A Heterogeneous nuclear r 99.3 1.5E-12 5.2E-17 111.7 6.4 101 243-353 2-103 (139)
211 2dh8_A DAZ-associated protein 99.3 2.5E-12 8.6E-17 104.0 7.4 62 287-348 13-76 (105)
212 3r27_A HnRNP L, heterogeneous 99.3 6.1E-12 2.1E-16 101.8 9.3 76 288-367 19-97 (100)
213 2dhg_A TRNA selenocysteine ass 99.3 6.8E-12 2.3E-16 101.2 9.6 60 287-346 6-67 (104)
214 2kt5_A RNA and export factor-b 99.3 1.1E-11 3.8E-16 103.4 11.2 84 287-373 32-120 (124)
215 2lkz_A RNA-binding protein 5; 99.3 2.1E-12 7.2E-17 103.6 6.4 65 288-355 7-75 (95)
216 2cqi_A Nucleolysin TIAR; RNA r 99.3 5.1E-12 1.7E-16 101.8 8.7 60 287-346 12-71 (103)
217 3p5t_L Cleavage and polyadenyl 99.3 1.1E-12 3.8E-17 103.4 4.5 62 291-355 2-67 (90)
218 2dnh_A Bruno-like 5, RNA bindi 99.3 1.1E-11 3.9E-16 100.0 10.5 59 287-345 12-71 (105)
219 1x4h_A RNA-binding protein 28; 99.3 6.5E-12 2.2E-16 102.4 9.1 60 287-346 12-73 (111)
220 2dgo_A Cytotoxic granule-assoc 99.3 6.4E-12 2.2E-16 103.3 8.9 61 286-346 11-73 (115)
221 1rk8_A CG8781-PA, CG8781-PA pr 99.3 4.7E-12 1.6E-16 111.2 8.6 99 247-345 11-129 (165)
222 2dnz_A Probable RNA-binding pr 99.3 9E-12 3.1E-16 98.7 9.4 59 288-346 3-63 (95)
223 3s7r_A Heterogeneous nuclear r 99.3 2.6E-12 8.7E-17 100.3 6.1 60 287-346 8-69 (87)
224 1jmt_A Splicing factor U2AF 35 99.3 9.9E-13 3.4E-17 107.2 3.8 72 204-276 19-103 (104)
225 2d9p_A Polyadenylate-binding p 99.3 9.4E-12 3.2E-16 100.3 9.5 60 287-346 12-71 (103)
226 2d9o_A DNAJ (HSP40) homolog, s 99.3 1E-11 3.5E-16 100.6 9.6 66 210-281 27-92 (100)
227 2cpf_A RNA binding motif prote 99.3 5.3E-12 1.8E-16 100.7 7.9 56 288-343 3-63 (98)
228 1whw_A Hypothetical protein ri 99.3 4.9E-12 1.7E-16 101.1 7.6 57 288-344 6-64 (99)
229 3tyt_A Heterogeneous nuclear r 99.3 9.8E-13 3.4E-17 119.9 4.0 71 198-270 121-194 (205)
230 2lxi_A RNA-binding protein 10; 99.3 1.6E-12 5.5E-17 103.0 4.5 56 291-346 2-60 (91)
231 2do4_A Squamous cell carcinoma 99.3 9.1E-12 3.1E-16 99.8 8.9 57 287-343 14-71 (100)
232 2err_A Ataxin-2-binding protei 99.3 3.8E-12 1.3E-16 104.2 6.7 62 285-346 24-85 (109)
233 2cq0_A Eukaryotic translation 99.3 5.2E-12 1.8E-16 101.8 7.4 56 287-342 12-69 (103)
234 2cph_A RNA binding motif prote 99.3 1.2E-11 4E-16 100.2 9.6 61 286-346 11-74 (107)
235 1x4d_A Matrin 3; structural ge 99.3 8E-12 2.7E-16 101.5 8.5 79 288-370 13-95 (102)
236 2cqg_A TDP-43, TAR DNA-binding 99.3 6.3E-12 2.2E-16 101.3 7.8 60 287-346 12-73 (103)
237 2cq1_A PTB-like protein L; RRM 99.3 9.9E-12 3.4E-16 100.7 9.0 57 288-348 13-69 (101)
238 2dnm_A SRP46 splicing factor; 99.3 6.9E-12 2.4E-16 101.1 8.0 62 287-348 10-73 (103)
239 2fy1_A RNA-binding motif prote 99.3 8.6E-12 2.9E-16 103.3 8.8 58 288-345 5-63 (116)
240 3sde_A Paraspeckle component 1 99.3 2.5E-12 8.4E-17 121.1 6.2 81 199-280 95-180 (261)
241 1x4e_A RNA binding motif, sing 99.3 1E-11 3.4E-16 96.5 8.5 59 288-346 3-63 (85)
242 1s79_A Lupus LA protein; RRM, 99.3 2.6E-12 8.8E-17 104.5 5.2 58 288-345 9-67 (103)
243 2do0_A HnRNP M, heterogeneous 99.3 1.4E-11 4.8E-16 101.0 9.6 59 288-346 13-72 (114)
244 1x5u_A Splicing factor 3B subu 99.3 1.3E-11 4.5E-16 99.7 9.1 56 286-341 11-68 (105)
245 1x4b_A Heterogeneous nuclear r 99.3 2.9E-12 9.9E-17 105.7 5.2 58 289-346 26-85 (116)
246 2ywk_A Putative RNA-binding pr 99.3 6.3E-12 2.1E-16 99.6 6.9 59 288-346 14-73 (95)
247 2div_A TRNA selenocysteine ass 99.3 1.4E-11 4.6E-16 98.5 8.8 54 288-341 7-63 (99)
248 1x5s_A Cold-inducible RNA-bind 99.3 8.4E-12 2.9E-16 100.3 7.3 60 287-346 9-70 (102)
249 2rs2_A Musashi-1, RNA-binding 99.3 3.4E-12 1.2E-16 104.5 5.1 60 287-346 22-83 (109)
250 2dgp_A Bruno-like 4, RNA bindi 99.3 1.1E-11 3.7E-16 100.4 7.9 61 286-346 9-71 (106)
251 1qm9_A Polypyrimidine tract-bi 99.3 3.4E-12 1.2E-16 114.4 5.4 76 198-278 118-196 (198)
252 2jrs_A RNA-binding protein 39; 99.3 2.4E-11 8E-16 99.4 9.8 60 284-343 20-81 (108)
253 3bs9_A Nucleolysin TIA-1 isofo 99.3 6.8E-12 2.3E-16 97.6 6.2 55 288-342 4-60 (87)
254 1x4a_A Splicing factor, argini 99.2 2.3E-11 8E-16 99.0 9.7 59 287-346 19-77 (109)
255 1wez_A HnRNP H', FTP-3, hetero 99.2 4.2E-12 1.4E-16 102.9 5.1 58 288-346 13-71 (102)
256 3ucg_A Polyadenylate-binding p 99.2 8.2E-12 2.8E-16 97.6 6.4 55 290-344 6-62 (89)
257 2x1f_A MRNA 3'-END-processing 99.2 5.5E-12 1.9E-16 100.4 5.5 75 290-367 2-82 (96)
258 1wg5_A Heterogeneous nuclear r 99.2 7.8E-12 2.7E-16 101.4 6.4 59 288-346 13-73 (104)
259 2dgx_A KIAA0430 protein; RRM d 99.2 8.5E-12 2.9E-16 99.6 6.4 56 288-344 7-66 (96)
260 2la6_A RNA-binding protein FUS 99.2 2.2E-11 7.4E-16 97.5 8.9 58 286-343 9-76 (99)
261 1x5o_A RNA binding motif, sing 99.2 4E-11 1.4E-15 98.3 10.5 54 287-340 22-76 (114)
262 2cqb_A Peptidyl-prolyl CIS-tra 99.2 8.4E-12 2.9E-16 100.3 6.2 60 287-346 9-70 (102)
263 2adc_A Polypyrimidine tract-bi 99.2 5.7E-12 2E-16 116.2 5.9 76 198-278 149-227 (229)
264 2cqc_A Arginine/serine-rich sp 99.2 1.8E-11 6.1E-16 96.8 7.8 56 287-342 12-69 (95)
265 2kxn_B Transformer-2 protein h 99.2 2.5E-11 8.5E-16 102.6 8.8 58 287-344 43-102 (129)
266 1wi8_A EIF-4B, eukaryotic tran 99.2 1.8E-11 6.1E-16 98.9 7.6 55 288-343 13-70 (104)
267 1x4f_A Matrin 3; structural ge 99.2 2.1E-11 7.2E-16 100.7 8.1 76 287-366 22-101 (112)
268 1x5t_A Splicing factor 3B subu 99.2 1.6E-11 5.3E-16 97.5 7.1 54 288-341 3-59 (96)
269 2dng_A Eukaryotic translation 99.2 3.8E-11 1.3E-15 96.8 9.3 57 287-344 12-70 (103)
270 3mdf_A Peptidyl-prolyl CIS-tra 99.2 9.8E-12 3.4E-16 96.3 5.6 54 288-341 5-60 (85)
271 2cpe_A RNA-binding protein EWS 99.2 2.3E-11 8E-16 99.6 7.9 61 286-346 11-81 (113)
272 3ulh_A THO complex subunit 4; 99.2 1.8E-11 6.3E-16 99.1 7.2 56 287-342 26-82 (107)
273 3v4m_A Splicing factor U2AF 65 99.2 4.5E-12 1.5E-16 103.5 3.5 80 199-278 4-96 (105)
274 1p27_B RNA-binding protein 8A; 99.2 4.1E-11 1.4E-15 96.9 9.3 57 288-344 21-79 (106)
275 2khc_A Testis-specific RNP-typ 99.2 2.2E-11 7.6E-16 100.5 7.8 55 287-341 37-93 (118)
276 3md1_A Nuclear and cytoplasmic 99.2 2.7E-11 9.1E-16 93.4 7.6 53 291-343 2-56 (83)
277 1u6f_A Tcubp1, RNA-binding pro 99.2 2.5E-11 8.4E-16 103.2 8.1 59 287-345 39-99 (139)
278 2hgl_A HNRPF protein, heteroge 99.2 7.4E-12 2.5E-16 107.0 4.8 56 288-343 42-101 (136)
279 2hvz_A Splicing factor, argini 99.2 4.5E-11 1.5E-15 95.9 9.1 72 291-365 1-73 (101)
280 2m2b_A RNA-binding protein 10; 99.2 1.9E-11 6.4E-16 103.2 7.0 59 287-346 20-82 (131)
281 2dis_A Unnamed protein product 99.2 2E-11 6.8E-16 99.3 6.9 59 288-346 6-68 (109)
282 1wf1_A RNA-binding protein RAL 99.2 5.7E-11 1.9E-15 97.0 9.6 73 266-346 5-78 (110)
283 1uaw_A Mouse-musashi-1; RNP-ty 99.2 9E-12 3.1E-16 94.7 4.4 57 291-347 1-59 (77)
284 2mss_A Protein (musashi1); RNA 99.2 6.4E-12 2.2E-16 95.2 3.5 51 292-342 1-53 (75)
285 2krb_A Eukaryotic translation 99.2 2.6E-11 8.8E-16 93.5 6.9 65 291-361 2-72 (81)
286 2e5h_A Zinc finger CCHC-type a 99.2 2.9E-11 9.8E-16 95.6 7.2 55 287-341 13-69 (94)
287 1h2v_Z 20 kDa nuclear CAP bind 99.2 3.8E-11 1.3E-15 104.2 8.6 59 288-346 37-97 (156)
288 4a8x_A RNA-binding protein wit 99.2 3.6E-11 1.2E-15 93.6 7.6 56 289-344 3-61 (88)
289 1x4c_A Splicing factor, argini 99.2 3.7E-11 1.3E-15 97.9 8.0 48 288-340 13-60 (108)
290 2cq4_A RNA binding motif prote 99.2 1.6E-11 5.6E-16 100.8 5.8 58 290-347 25-84 (114)
291 2cpi_A CCR4-NOT transcription 99.2 2.3E-11 7.7E-16 99.8 6.6 57 288-344 13-77 (111)
292 3d2w_A TAR DNA-binding protein 99.2 3.1E-11 1.1E-15 95.2 7.1 55 287-344 8-62 (89)
293 2hgm_A HNRPF protein, heteroge 99.2 2.1E-11 7E-16 102.9 6.3 60 288-348 40-102 (126)
294 2j76_E EIF-4B, EIF4B, eukaryot 99.2 1.1E-11 3.9E-16 99.6 4.3 58 287-345 16-76 (100)
295 3tht_A Alkylated DNA repair pr 99.2 1.1E-11 3.9E-16 121.3 5.1 109 197-314 15-132 (345)
296 1iqt_A AUF1, heterogeneous nuc 99.2 6.9E-12 2.3E-16 95.0 2.8 55 292-346 1-57 (75)
297 2dnq_A RNA-binding protein 4B; 99.2 7.7E-11 2.6E-15 92.6 8.7 54 287-346 5-58 (90)
298 2db1_A Heterogeneous nuclear r 99.2 1.2E-11 4.2E-16 102.7 4.0 59 288-346 15-77 (118)
299 1sjr_A Polypyrimidine tract-bi 99.2 8E-11 2.7E-15 103.4 9.3 90 288-386 44-139 (164)
300 1oo0_B CG8781-PA, drosophila Y 99.2 2.7E-11 9.4E-16 98.7 5.8 57 288-344 24-82 (110)
301 1why_A Hypothetical protein ri 99.2 8.9E-11 3E-15 93.5 8.6 53 288-344 15-67 (97)
302 2dgw_A Probable RNA-binding pr 99.2 6E-11 2.1E-15 93.3 7.5 53 288-341 8-61 (91)
303 2cpj_A Non-POU domain-containi 99.2 8.7E-11 3E-15 93.9 8.5 56 287-346 12-67 (99)
304 2cpy_A RNA-binding protein 12; 99.2 4.3E-11 1.5E-15 98.5 6.9 60 287-346 12-73 (114)
305 2dnn_A RNA-binding protein 12; 99.2 2.4E-11 8.1E-16 99.9 5.2 55 291-346 17-72 (109)
306 3ue2_A Poly(U)-binding-splicin 99.2 1.5E-11 5E-16 102.6 3.9 80 199-278 19-108 (118)
307 2xs2_A Deleted in azoospermia- 99.1 1.2E-11 4.2E-16 99.4 3.2 60 289-348 8-68 (102)
308 2la4_A Nuclear and cytoplasmic 99.1 8.9E-11 3E-15 94.1 8.2 51 288-342 25-75 (101)
309 1x4g_A Nucleolysin TIAR; struc 99.1 7E-11 2.4E-15 96.3 7.7 55 288-346 23-77 (109)
310 1p1t_A Cleavage stimulation fa 99.1 4.3E-11 1.5E-15 96.3 6.2 53 289-341 7-61 (104)
311 2lmi_A GRSF-1, G-rich sequence 99.1 1.9E-11 6.3E-16 99.6 4.0 59 288-346 9-71 (107)
312 2dnl_A Cytoplasmic polyadenyla 99.1 3.1E-11 1E-15 99.5 5.2 58 288-346 6-68 (114)
313 2dha_A FLJ20171 protein; RRM d 99.1 2E-11 6.7E-16 102.6 4.1 59 288-346 21-84 (123)
314 2ek1_A RNA-binding protein 12; 99.1 1.9E-11 6.7E-16 96.7 3.8 53 289-341 14-68 (95)
315 3n9u_C Cleavage and polyadenyl 99.1 4.7E-11 1.6E-15 104.3 6.5 56 289-344 54-113 (156)
316 2jwn_A Embryonic polyadenylate 99.1 7.2E-11 2.5E-15 98.3 7.4 57 290-346 36-94 (124)
317 3ex7_B RNA-binding protein 8A; 99.1 4.9E-11 1.7E-15 99.6 6.4 60 287-346 19-80 (126)
318 3ns6_A Eukaryotic translation 99.1 9.9E-12 3.4E-16 100.1 2.0 54 290-343 6-67 (100)
319 2cqp_A RNA-binding protein 12; 99.1 3.5E-11 1.2E-15 95.9 5.1 54 288-341 13-68 (98)
320 2dnp_A RNA-binding protein 14; 99.1 7.4E-11 2.5E-15 92.7 6.9 54 287-346 6-59 (90)
321 2ki2_A SS-DNA binding protein 99.1 1.6E-11 5.6E-16 96.3 3.1 51 291-341 2-54 (90)
322 2nlw_A Eukaryotic translation 99.1 6E-11 2E-15 96.2 6.3 58 288-345 13-76 (105)
323 1wel_A RNA-binding protein 12; 99.1 2.3E-11 8E-16 101.6 4.0 59 288-346 23-83 (124)
324 2f3j_A RNA and export factor b 99.1 4.8E-11 1.6E-15 106.3 6.1 57 288-344 86-143 (177)
325 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.1 1.9E-10 6.5E-15 97.3 9.4 55 286-340 59-115 (140)
326 3q2s_C Cleavage and polyadenyl 99.1 5.1E-11 1.7E-15 110.4 6.0 59 289-347 67-129 (229)
327 2e5i_A Heterogeneous nuclear r 99.1 3.5E-10 1.2E-14 95.0 10.3 86 291-387 26-118 (124)
328 1wf0_A TDP-43, TAR DNA-binding 99.1 4.1E-11 1.4E-15 93.8 4.3 53 288-343 3-55 (88)
329 2e5j_A Methenyltetrahydrofolat 99.1 1.8E-10 6.2E-15 91.8 8.1 53 288-343 17-69 (97)
330 2dgt_A RNA-binding protein 30; 99.1 1.3E-10 4.6E-15 91.5 7.1 54 287-346 7-60 (92)
331 2ytc_A PRE-mRNA-splicing facto 99.1 1.9E-10 6.6E-15 89.0 7.8 52 286-341 8-59 (85)
332 2e5g_A U6 snRNA-specific termi 99.1 5E-10 1.7E-14 88.7 9.9 51 288-341 6-56 (94)
333 2cpd_A Apobec-1 stimulating pr 99.1 3.8E-10 1.3E-14 90.2 9.2 52 286-343 11-64 (99)
334 2fc9_A NCL protein; structure 99.1 1.4E-10 4.9E-15 92.9 6.6 53 286-341 11-64 (101)
335 1fj7_A Nucleolin RBD1, protein 99.1 2.3E-11 7.9E-16 97.6 1.9 57 288-345 15-73 (101)
336 2jvr_A Nucleolar protein 3; RN 99.1 8.5E-11 2.9E-15 96.9 5.3 51 289-341 27-78 (111)
337 2dgu_A Heterogeneous nuclear r 99.1 2.5E-10 8.6E-15 92.0 7.9 54 287-346 8-61 (103)
338 3beg_B Splicing factor, argini 99.1 1.1E-10 3.6E-15 96.5 5.6 59 289-355 15-73 (115)
339 2voo_A Lupus LA protein; RNA-b 99.1 7.3E-11 2.5E-15 106.6 4.9 96 251-346 63-166 (193)
340 2wbr_A GW182, gawky, LD47780P; 99.1 7.4E-11 2.5E-15 92.9 4.3 59 290-355 7-65 (89)
341 2jvo_A Nucleolar protein 3; nu 99.1 2.2E-10 7.6E-15 93.6 7.2 53 286-344 27-79 (108)
342 3lqv_A PRE-mRNA branch site pr 99.1 2.2E-10 7.6E-15 94.0 7.0 57 288-345 6-62 (115)
343 2lcw_A RNA-binding protein FUS 98.6 1.8E-11 6.1E-16 100.9 0.0 60 288-347 5-74 (116)
344 1whx_A Hypothetical protein ri 99.0 1.9E-10 6.5E-15 94.4 5.9 60 289-355 9-68 (111)
345 2j8a_A Histone-lysine N-methyl 99.0 3.1E-10 1.1E-14 95.4 7.1 49 291-339 3-57 (136)
346 3zzy_A Polypyrimidine tract-bi 99.0 6.7E-10 2.3E-14 94.0 9.2 89 289-387 27-122 (130)
347 2xnq_A Nuclear polyadenylated 99.0 3.9E-10 1.3E-14 90.2 7.4 54 287-346 19-73 (97)
348 2kvi_A Nuclear polyadenylated 99.0 2.2E-10 7.6E-15 91.1 5.7 53 288-346 8-61 (96)
349 2cpx_A Hypothetical protein FL 99.0 7.7E-10 2.6E-14 90.6 9.1 55 288-344 23-81 (115)
350 2fc8_A NCL protein; structure 99.0 4.8E-10 1.6E-14 89.9 7.5 55 286-343 11-67 (102)
351 2e44_A Insulin-like growth fac 99.0 5.3E-10 1.8E-14 88.6 7.1 54 288-343 13-67 (96)
352 1wg1_A KIAA1579 protein, homol 99.0 3.2E-10 1.1E-14 88.8 5.3 50 289-343 4-53 (88)
353 2a3j_A U1 small nuclear ribonu 99.0 6.9E-10 2.4E-14 93.6 7.7 57 288-345 27-87 (127)
354 2cqh_A IGF-II mRNA-binding pro 99.0 2.6E-10 8.8E-15 90.0 4.7 54 288-346 6-60 (93)
355 2cq2_A Hypothetical protein LO 99.0 3.1E-10 1.1E-14 93.9 5.3 61 288-355 23-85 (114)
356 1x5p_A Negative elongation fac 99.0 1.6E-09 5.6E-14 86.1 8.9 51 287-343 12-62 (97)
357 1fjc_A Nucleolin RBD2, protein 99.0 3E-10 1E-14 90.1 3.7 51 288-341 14-64 (96)
358 2hzc_A Splicing factor U2AF 65 98.9 6.8E-10 2.3E-14 86.2 5.2 48 289-340 5-63 (87)
359 1nu4_A U1A RNA binding domain; 98.9 3.6E-10 1.2E-14 89.6 3.1 57 288-345 6-66 (97)
360 3egn_A RNA-binding protein 40; 98.9 5.8E-10 2E-14 95.2 4.6 58 288-346 43-108 (143)
361 3u1l_A PRE-mRNA-splicing facto 98.9 2E-09 6.8E-14 100.3 8.5 91 257-355 102-201 (240)
362 3s6e_A RNA-binding protein 39; 98.8 1.1E-09 3.8E-14 90.6 3.0 60 214-277 31-91 (114)
363 2bz2_A Negative elongation fac 98.8 4.9E-09 1.7E-13 87.4 6.9 53 288-346 37-89 (121)
364 1owx_A Lupus LA protein, SS-B, 98.8 4.2E-09 1.4E-13 87.9 5.1 70 198-273 16-90 (121)
365 2dnr_A Synaptojanin-1; RRM dom 98.8 2.5E-09 8.6E-14 84.3 2.7 74 198-279 5-86 (91)
366 2pe8_A Splicing factor 45; RRM 98.7 3.1E-08 1E-12 80.6 6.5 65 288-355 6-78 (105)
367 2dit_A HIV TAT specific factor 98.7 6.4E-08 2.2E-12 79.1 8.2 54 286-341 11-75 (112)
368 3tht_A Alkylated DNA repair pr 98.6 3.8E-08 1.3E-12 96.3 7.6 63 288-357 16-80 (345)
369 2d9o_A DNAJ (HSP40) homolog, s 98.6 2.7E-07 9.1E-12 74.4 9.9 44 300-346 27-70 (100)
370 2diu_A KIAA0430 protein; struc 98.6 9.6E-08 3.3E-12 75.9 7.0 65 290-365 8-82 (96)
371 1ufw_A Synaptojanin 2; RNP dom 98.6 1.4E-08 4.9E-13 80.4 1.9 72 197-276 12-92 (95)
372 3dxb_A Thioredoxin N-terminall 98.5 1.1E-07 3.9E-12 86.8 7.5 67 211-277 140-211 (222)
373 1jmt_A Splicing factor U2AF 35 98.5 3.4E-08 1.2E-12 80.1 1.7 47 295-341 20-79 (104)
374 3v4m_A Splicing factor U2AF 65 98.4 3.9E-07 1.3E-11 73.9 5.2 64 289-355 4-81 (105)
375 2dhx_A Poly (ADP-ribose) polym 98.3 1.4E-06 4.9E-11 69.8 7.2 87 200-303 8-99 (104)
376 1owx_A Lupus LA protein, SS-B, 98.3 1E-06 3.5E-11 73.3 6.6 48 288-339 16-64 (121)
377 3ue2_A Poly(U)-binding-splicin 98.2 1.1E-06 3.8E-11 72.8 5.5 64 289-355 19-93 (118)
378 3s6e_A RNA-binding protein 39; 97.9 1.8E-05 6.3E-10 65.0 6.8 62 289-355 6-77 (114)
379 2l9w_A U4/U6 snRNA-associated- 97.8 1.8E-05 6E-10 64.1 4.3 71 198-274 19-95 (117)
380 2dnr_A Synaptojanin-1; RRM dom 97.8 2.4E-05 8.2E-10 61.5 4.8 75 288-375 5-87 (91)
381 1ufw_A Synaptojanin 2; RNP dom 97.5 5.3E-05 1.8E-09 59.9 3.5 53 288-346 13-74 (95)
382 3dxb_A Thioredoxin N-terminall 97.0 0.00064 2.2E-08 61.6 5.0 51 302-355 141-197 (222)
383 1whv_A Poly(A)-specific ribonu 96.6 0.0064 2.2E-07 48.1 7.1 54 200-261 15-68 (100)
384 1wey_A Calcipressin 1; structu 96.3 0.0061 2.1E-07 48.9 5.5 75 200-280 5-85 (104)
385 3pq1_A Poly(A) RNA polymerase; 96.3 0.0017 5.7E-08 65.7 2.7 56 200-261 53-108 (464)
386 1uw4_A UPF3X; nonsense mediate 96.2 0.009 3.1E-07 46.9 6.2 69 201-269 2-73 (91)
387 1wwh_A Nucleoporin 35, nucleop 96.2 0.0067 2.3E-07 49.9 5.6 72 199-277 23-95 (119)
388 2l9w_A U4/U6 snRNA-associated- 96.1 0.019 6.6E-07 46.4 7.7 55 288-346 19-78 (117)
389 3ctr_A Poly(A)-specific ribonu 95.9 0.0073 2.5E-07 47.9 4.3 50 203-261 9-58 (101)
390 1whv_A Poly(A)-specific ribonu 95.0 0.092 3.1E-06 41.5 7.7 63 291-362 16-78 (100)
391 2dhx_A Poly (ADP-ribose) polym 94.5 0.085 2.9E-06 42.1 6.5 55 289-355 7-66 (104)
392 1uw4_A UPF3X; nonsense mediate 94.1 0.14 4.8E-06 40.0 6.9 50 291-340 2-55 (91)
393 2l08_A Regulator of nonsense t 93.9 0.028 9.4E-07 44.5 2.5 70 200-269 9-81 (97)
394 3p3d_A Nucleoporin 53; structu 93.8 0.018 6E-07 48.1 1.2 76 202-278 9-98 (132)
395 3pq1_A Poly(A) RNA polymerase; 93.2 0.057 2E-06 54.5 4.1 50 291-344 54-103 (464)
396 3ctr_A Poly(A)-specific ribonu 92.6 0.18 6.3E-06 39.9 5.4 62 292-362 7-68 (101)
397 1wey_A Calcipressin 1; structu 89.2 0.87 3E-05 36.3 6.3 60 290-356 5-69 (104)
398 1wwh_A Nucleoporin 35, nucleop 86.5 1.1 3.9E-05 36.5 5.6 56 289-355 23-78 (119)
399 2l08_A Regulator of nonsense t 86.1 0.45 1.5E-05 37.5 2.9 63 290-358 9-75 (97)
400 3d45_A Poly(A)-specific ribonu 81.8 1.6 5.4E-05 44.5 5.5 52 201-261 441-492 (507)
401 3d45_A Poly(A)-specific ribonu 57.5 25 0.00085 35.6 7.9 61 291-361 441-501 (507)
402 4e8u_A Putative uncharacterize 54.2 51 0.0017 28.4 8.1 65 292-357 14-90 (172)
403 3p3d_A Nucleoporin 53; structu 46.7 6 0.00021 32.7 1.0 56 290-346 7-78 (132)
404 1qvc_A Single stranded DNA bin 29.2 1E+02 0.0034 25.4 5.9 21 3-23 89-112 (145)
405 3pgz_A Single-stranded DNA-bin 26.9 33 0.0011 30.2 2.5 31 3-33 111-143 (193)
406 3tbg_A Cytochrome P450 2D6; mo 26.5 51 0.0017 31.6 4.1 58 203-269 19-79 (479)
407 3zzp_A TS9, ribosomal protein 23.6 53 0.0018 24.2 2.8 59 244-314 7-68 (77)
408 2g0c_A ATP-dependent RNA helic 22.3 1.3E+02 0.0044 21.4 4.7 57 211-276 12-74 (76)
409 2i9x_A Putative septation prot 21.7 1.1E+02 0.0039 23.1 4.3 27 226-252 5-31 (87)
410 3swz_A Steroid 17-alpha-hydrox 21.3 88 0.003 30.2 4.8 60 202-270 16-79 (494)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=6.7e-31 Score=241.38 Aligned_cols=146 Identities=14% Similarity=0.213 Sum_probs=127.6
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
.+.++|||+|||+++||++|+++|++||+|++|+|++|+.|++++|||||+|.+.++|++||+. ++..+.++.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 3457899999999999999999999999999999999999999999999999999999999997 888899999988876
Q ss_pred CCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 277 NPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 277 ~~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
...... .....++|||+||+.++|+++|+++|++||.|+.|+|++|+..+++||||+|.+..+++.|
T Consensus 93 ~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~A 159 (213)
T 4f02_A 93 QRDPSL---RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 159 (213)
T ss_dssp CCCTHH---HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHH
T ss_pred cccccc---cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHH
Confidence 543321 1223478999999999999999999999999999999999888999999999666444444
No 2
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=1.4e-30 Score=233.88 Aligned_cols=150 Identities=31% Similarity=0.557 Sum_probs=128.1
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPC 276 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a 276 (388)
..+.++|||+|||+++|+++|+++|+.||+|.+|+|++|+.+++++|||||+|.+.++|++||+.++..|.++.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 45678999999999999999999999999999999999999999999999999999999999999889999999999988
Q ss_pred CCCCCCC-CCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC--CCCeeEEEEEcCChhhHHHH
Q psy10362 277 NPRTLQK-PKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR--TIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 277 ~~~~~~~-~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~--~~~rG~aFV~F~~~~~~~~a 346 (388)
....... .......++|||+|||.++|+++|+++|++||.|+.|+|+.|+ .++++||||+|.+..++..|
T Consensus 90 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 162 (196)
T 1l3k_A 90 VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162 (196)
T ss_dssp CC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred cCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHH
Confidence 7654322 2233455899999999999999999999999999999999986 37899999999665444433
No 3
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=1.4e-28 Score=224.24 Aligned_cols=147 Identities=14% Similarity=0.309 Sum_probs=124.6
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
.+.++|||+|||+++++++|+++|++||+|.+|+|++|+.+++++|||||+|.++++|++||+. ++..|.++.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 3468999999999999999999999999999999999999999999999999999999999996 889999999999877
Q ss_pred CCCCCCCC------CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHH
Q psy10362 277 NPRTLQKP------KKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQK 344 (388)
Q Consensus 277 ~~~~~~~~------~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~ 344 (388)
........ ......++|||+||+.++|+++|+++|++||.|+.|+|++++. ++++||||+|.+..++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 181 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQ 181 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHH
Confidence 65432111 1124557999999999999999999999999999999999853 78999999996654333
No 4
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=5.8e-30 Score=224.13 Aligned_cols=141 Identities=31% Similarity=0.586 Sum_probs=124.8
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNP 278 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~~ 278 (388)
+.++|||+|||+++|+++|+++|++||+|.+|+|++|+.+++++|||||+|.++++|++||+. .+.++|+.|.+.++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 458899999999999999999999999999999999999999999999999999999999995 5689999999988765
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC--CCCeeEEEEEcCChhhHHH
Q psy10362 279 RTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR--TIRAGITRVPTQELPVQKE 345 (388)
Q Consensus 279 ~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~--~~~rG~aFV~F~~~~~~~~ 345 (388)
... ....++|||+|||.++|+++|+++|++||.|++|+|+.|+ .+++|||||+|.+..++..
T Consensus 81 ~~~-----~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~ 144 (167)
T 2cjk_A 81 RDE-----QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDR 144 (167)
T ss_dssp HHH-----HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHH
T ss_pred hhh-----ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 432 1334689999999999999999999999999999999985 3789999999966544333
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=1.7e-28 Score=214.07 Aligned_cols=136 Identities=21% Similarity=0.456 Sum_probs=124.0
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCNP 278 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~~ 278 (388)
.++|||+|||+++++++|+++|+.||+|.+|+|++++.+++++|||||+|.++++|++|++. ++..+.++.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 47899999999999999999999999999999999998999999999999999999999996 88999999999988865
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCCh
Q psy10362 279 RTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQEL 340 (388)
Q Consensus 279 ~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~ 340 (388)
... ....++|||+|||.++|+++|+++|++||.|+.++|+.++. ++++||||+|.+.
T Consensus 82 ~~~-----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 140 (167)
T 1fxl_A 82 SSA-----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 140 (167)
T ss_dssp CCG-----GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred Ccc-----cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCH
Confidence 432 23457899999999999999999999999999999998863 6899999999554
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=1.4e-28 Score=215.22 Aligned_cols=137 Identities=20% Similarity=0.341 Sum_probs=124.9
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCN 277 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~ 277 (388)
+.++|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.++++|++|++. ++..+.+++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 358899999999999999999999999999999999999999999999999999999999986 8899999999999887
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC--CCCeeEEEEEcCCh
Q psy10362 278 PRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR--TIRAGITRVPTQEL 340 (388)
Q Consensus 278 ~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~--~~~rG~aFV~F~~~ 340 (388)
+... ....++|||.|||.++|+++|+++|++||.|+.++|+.++ .++++||||+|.+.
T Consensus 82 ~~~~-----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 141 (168)
T 1b7f_A 82 PGGE-----SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKR 141 (168)
T ss_dssp CCSS-----TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCcc-----cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCH
Confidence 5432 3456899999999999999999999999999999999986 36899999999544
No 7
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=3.2e-28 Score=214.16 Aligned_cols=150 Identities=20% Similarity=0.283 Sum_probs=122.3
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCC--CceeEEEEEeCChHhHHHHHHh-CCCCCC---CCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETG--RSRGFGFVTFADPNNVGVVIQN-CPHTLD---GRTID 272 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg--~skG~gFV~F~~~~~A~~Ai~~-~~~~l~---Gr~i~ 272 (388)
+.++|||+|||+++++++|+++|++||+|.+|+|++++.++ +++|||||+|.+.++|++||+. ++..+. .+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999998887 8999999999999999999986 665554 34444
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChhhHHHHHHHHH
Q psy10362 273 PKPCNPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELPVQKEATAVQQ 351 (388)
Q Consensus 273 v~~a~~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~~~~a~~a~~ 351 (388)
+.++.... ......++|||+|||.++|+++|+++|++||.|+.|+|++++. ++++||||+|.+.. .|..|++
T Consensus 82 ~~~~~~~~----~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~---~A~~A~~ 154 (175)
T 3nmr_A 82 MKPADSEK----NNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRA---MAQTAIK 154 (175)
T ss_dssp EEECGGGC----CSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHH---HHHHHHH
T ss_pred Eccccccc----cccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHH---HHHHHHH
Confidence 44433222 2233567999999999999999999999999999999999865 68999999995543 3334444
Q ss_pred HHhh
Q psy10362 352 VLRR 355 (388)
Q Consensus 352 aL~~ 355 (388)
.|..
T Consensus 155 ~l~g 158 (175)
T 3nmr_A 155 AMHQ 158 (175)
T ss_dssp HHTT
T ss_pred HhcC
Confidence 4443
No 8
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.3e-28 Score=211.22 Aligned_cols=137 Identities=13% Similarity=0.207 Sum_probs=121.7
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCNPR 279 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~~~ 279 (388)
|+|||+|||+++++++|+++|++||+|.+|+|++++ +++++|||||+|.+.++|++|++. ++..+.++.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999996 478999999999999999999976 899999999999888654
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChh
Q psy10362 280 TLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELP 341 (388)
Q Consensus 280 ~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~ 341 (388)
.. ......++|||+|||.++|+++|+++|++||.|+.++|+.|+. ++++||||+|.+..
T Consensus 80 ~~---~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 140 (166)
T 3md3_A 80 QQ---SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQD 140 (166)
T ss_dssp CC---CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHH
T ss_pred CC---CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHH
Confidence 43 2334567999999999999999999999999999999998853 78999999995543
No 9
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=6.9e-28 Score=220.86 Aligned_cols=155 Identities=15% Similarity=0.125 Sum_probs=125.3
Q ss_pred CCCCCCcccCC-CcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSA-YGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 199 ~~~~vfVgnLp-~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
+.++|||+||+ +.+++++|+++|++||.|.+|+|+++ +||||||+|.+.++|++||+. ++..|.|++|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45889999999 89999999999999999999999876 368999999999999999997 999999999999887
Q ss_pred CCCCCCCCC--------------------------------CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCe--eEEEE
Q psy10362 277 NPRTLQKPK--------------------------------KNSSFPKVFLGGLPSNVTETDLRTFFNRYGKV--MEVVI 322 (388)
Q Consensus 277 ~~~~~~~~~--------------------------------~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I--~~v~v 322 (388)
+........ ...+.++|||+|||.++|+++|+++|++||.| +.|+|
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 543211000 01234689999999999999999999999999 89999
Q ss_pred ecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhhccccceecc
Q psy10362 323 MSPRTIRAGITRVPTQELPVQKEATAVQQVLRRSSTTKVQAP 364 (388)
Q Consensus 323 ~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~~~~i~~~ 364 (388)
+.++.++++|+||+|++ .++|.+||...+...+...
T Consensus 158 ~~~~~~~~g~gfV~f~~------~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 158 FSGKSERSSSGLLEWDS------KSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CSCCSSSSEEEEEECSS------HHHHHHHHHHHTTCEECCS
T ss_pred EcCCCCCceEEEEEeCC------HHHHHHHHHHhCCCCccCC
Confidence 98877677999999944 3444444554444444433
No 10
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.93 E-value=6.9e-26 Score=215.58 Aligned_cols=139 Identities=17% Similarity=0.226 Sum_probs=118.1
Q ss_pred CCCCCCCCCcccCCCcCcHHHHH----HHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQ----RYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRT 270 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~ 270 (388)
...+.++|||+|||+++++++|+ ++|++||.|++|+|++ ++++||||||+|.+.++|++||+. ++..|.++.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34567999999999999999976 8999999999999886 678999999999999999999976 889999999
Q ss_pred CCCCCCCCCCCC--------------------------------------------------------------------
Q psy10362 271 IDPKPCNPRTLQ-------------------------------------------------------------------- 282 (388)
Q Consensus 271 i~v~~a~~~~~~-------------------------------------------------------------------- 282 (388)
|+|.++......
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 999887654310
Q ss_pred --------------------------------------CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEec
Q psy10362 283 --------------------------------------KPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMS 324 (388)
Q Consensus 283 --------------------------------------~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~ 324 (388)
........++|||+||+.++|+++|+++|++||.|++|+|+.
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 001122447899999999999999999999999999999996
Q ss_pred CCCCCeeEEEEEcCCh
Q psy10362 325 PRTIRAGITRVPTQEL 340 (388)
Q Consensus 325 d~~~~rG~aFV~F~~~ 340 (388)
++ ++||||+|.+.
T Consensus 242 ~~---~g~afV~f~~~ 254 (282)
T 3pgw_A 242 GR---HDIAFVEFDNE 254 (282)
T ss_pred CC---CcEEEEEeCCH
Confidence 54 68999999554
No 11
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.93 E-value=7.1e-26 Score=210.07 Aligned_cols=137 Identities=19% Similarity=0.280 Sum_probs=117.2
Q ss_pred CCCCCCCCcccCCC-cCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAY-GTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPK 274 (388)
Q Consensus 197 ~~~~~~vfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~ 274 (388)
.++.++|||+|||+ ++++++|+++|++||.|.+|+|++++ +|||||+|.+.++|++||+. ++..|.++.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45678999999999 99999999999999999999999885 68999999999999999985 8999999999998
Q ss_pred CCCCCCCCCCC------------------------------CCCCCCeEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEe
Q psy10362 275 PCNPRTLQKPK------------------------------KNSSFPKVFLGGLPSNVTETDLRTFFNRYG-KVMEVVIM 323 (388)
Q Consensus 275 ~a~~~~~~~~~------------------------------~~~~~~~lfV~nLp~~vtee~L~~~F~~~G-~I~~v~v~ 323 (388)
++.......+. ...+.++|||+|||.++|+++|+++|++|| .|+.|+|+
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~ 185 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 185 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEE
Confidence 88654211110 012357899999999999999999999999 99999997
Q ss_pred cCCCCCeeEEEEEcCChh
Q psy10362 324 SPRTIRAGITRVPTQELP 341 (388)
Q Consensus 324 ~d~~~~rG~aFV~F~~~~ 341 (388)
.+ .++||||+|.+..
T Consensus 186 ~~---~~g~afV~f~~~~ 200 (229)
T 2adc_A 186 QK---DRKMALIQMGSVE 200 (229)
T ss_dssp SS---STTCEEEEESSHH
T ss_pred EC---CCcEEEEEECCHH
Confidence 63 4789999995543
No 12
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=4.5e-27 Score=211.34 Aligned_cols=142 Identities=14% Similarity=0.290 Sum_probs=117.2
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhcc----C-------ceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRY----G-------EVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLD 267 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~ 267 (388)
..++|||+|||+++++++|+++|++| | .|.++++. +++|||||+|.++++|++||+.++..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHGGGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHHHhcCCEEc
Confidence 45899999999999999999999999 4 55555553 4578999999999999999955899999
Q ss_pred CCCCCCCCCCCCCCCC---------------CCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC--CCCe
Q psy10362 268 GRTIDPKPCNPRTLQK---------------PKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR--TIRA 330 (388)
Q Consensus 268 Gr~i~v~~a~~~~~~~---------------~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~--~~~r 330 (388)
++.|+|.++....... .......++|||+|||.++|+++|+++|++||.|+.|+|++++ .+++
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 9999999876542211 1112455899999999999999999999999999999999985 3689
Q ss_pred eEEEEEcCChhhHHHH
Q psy10362 331 GITRVPTQELPVQKEA 346 (388)
Q Consensus 331 G~aFV~F~~~~~~~~a 346 (388)
+||||+|.+...+..|
T Consensus 157 g~afV~f~~~~~a~~A 172 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQA 172 (198)
T ss_dssp EEEEEEESSSSHHHHH
T ss_pred eEEEEEECCHHHHHHH
Confidence 9999999776555444
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.93 E-value=1.1e-25 Score=214.38 Aligned_cols=141 Identities=12% Similarity=0.137 Sum_probs=126.8
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCN 277 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~ 277 (388)
..++|||+|||+++++++|+++|+.||.|.+++|++|+.+++++|||||+|.+.++|.+||+. ++..+.++.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 457899999999999999999999999999999999999999999999999999999999976 8899999999999987
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCC-CHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChh
Q psy10362 278 PRTLQKPKKNSSFPKVFLGGLPSNV-TETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELP 341 (388)
Q Consensus 278 ~~~~~~~~~~~~~~~lfV~nLp~~v-tee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~ 341 (388)
..... ......++|||.|||.++ |+++|+++|++||.|+.|+|++++. ++++||||+|.+..
T Consensus 174 ~~~~~--~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 237 (284)
T 3smz_A 174 AGQLT--PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAE 237 (284)
T ss_dssp GGGCC--TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHH
T ss_pred CCCCC--cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHH
Confidence 65432 233456899999999996 9999999999999999999999864 78999999995543
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=5.2e-27 Score=207.33 Aligned_cols=139 Identities=17% Similarity=0.153 Sum_probs=118.3
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKP 275 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~ 275 (388)
...+.++|||+|||+++++++|+++|+.||.|.. .++.++.+++++|||||+|.++++|++||+.++..|.+++|+|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 3456789999999999999999999999998876 445566788999999999999999999997788999999999999
Q ss_pred CCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChh
Q psy10362 276 CNPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELP 341 (388)
Q Consensus 276 a~~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~ 341 (388)
+...... .....++|||+|||.++|+++|+++|++||.|..+ ....++++||||+|.+..
T Consensus 88 ~~~~~~~---~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~ 147 (175)
T 1fje_B 88 PKGRDSK---KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEA 147 (175)
T ss_dssp CCCSSCS---TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSHH
T ss_pred CCCcccc---ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCHH
Confidence 8765422 23455799999999999999999999999988776 444589999999995543
No 15
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.93 E-value=1.6e-25 Score=196.69 Aligned_cols=137 Identities=15% Similarity=0.312 Sum_probs=117.2
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhcc----C-------ceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRY----G-------EVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLD 267 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~ 267 (388)
+.++|||+|||+++|+++|+++|++| | .|.++++.+ ++|||||+|.++++|++||+.++..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 45899999999999999999999999 6 677777654 468999999999999999955899999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC--CCCeeEEEEEcCChhhHHH
Q psy10362 268 GRTIDPKPCNPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR--TIRAGITRVPTQELPVQKE 345 (388)
Q Consensus 268 Gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~--~~~rG~aFV~F~~~~~~~~ 345 (388)
+++|+|.++..... ....++|||+|||.++|+++|+++|++||.|+.|+|++++ .++++||||+|.+..++..
T Consensus 77 g~~i~v~~~~~~~~-----~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 151 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP-----LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 151 (172)
T ss_dssp TEECEEECCSSCCC-----CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHH
T ss_pred CceeeecCCcccCC-----CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 99999988754432 2346899999999999999999999999999999999985 3789999999966654444
Q ss_pred H
Q psy10362 346 A 346 (388)
Q Consensus 346 a 346 (388)
|
T Consensus 152 A 152 (172)
T 2g4b_A 152 A 152 (172)
T ss_dssp H
T ss_pred H
Confidence 3
No 16
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.92 E-value=1.9e-25 Score=201.49 Aligned_cols=133 Identities=19% Similarity=0.272 Sum_probs=114.6
Q ss_pred CCCCCcccCCC-cCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAY-GTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCN 277 (388)
Q Consensus 200 ~~~vfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~ 277 (388)
.++|||+|||+ ++++++|+++|++||.|.+|+|++++ +|||||+|.+.++|++||+. ++..+.++.|+|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 47899999999 99999999999999999999999875 67999999999999999985 8999999999998776
Q ss_pred CCCCCCCC------------------------------CCCCCCeEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEecCC
Q psy10362 278 PRTLQKPK------------------------------KNSSFPKVFLGGLPSNVTETDLRTFFNRYG-KVMEVVIMSPR 326 (388)
Q Consensus 278 ~~~~~~~~------------------------------~~~~~~~lfV~nLp~~vtee~L~~~F~~~G-~I~~v~v~~d~ 326 (388)
......+. ...+.++|||+|||.++|+++|+++|++|| .|+.|+|+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~- 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-
Confidence 44211100 112367899999999999999999999999 9999999864
Q ss_pred CCCeeEEEEEcCCh
Q psy10362 327 TIRAGITRVPTQEL 340 (388)
Q Consensus 327 ~~~rG~aFV~F~~~ 340 (388)
.++||||+|.+.
T Consensus 157 --~~g~afV~f~~~ 168 (198)
T 1qm9_A 157 --DRKMALIQMGSV 168 (198)
T ss_dssp --TSSCEEEECSSH
T ss_pred --CCcEEEEEeCCH
Confidence 479999999554
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.92 E-value=2.3e-25 Score=213.05 Aligned_cols=141 Identities=11% Similarity=0.133 Sum_probs=117.0
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccC-ceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYG-EVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
..++|||+|||+++++++|+++|+.|| .|.+|+|+.++. ++++|||||+|.+.++|++||+. ++..|.++.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 468899999999999999999999999 999999999865 88999999999999999999995 999999999999988
Q ss_pred CCCCCCCCC--CCCCCCeEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEecCC---CCCeeEEEEEcCCh
Q psy10362 277 NPRTLQKPK--KNSSFPKVFLGGLPSN-VTETDLRTFFNRYGKVMEVVIMSPR---TIRAGITRVPTQEL 340 (388)
Q Consensus 277 ~~~~~~~~~--~~~~~~~lfV~nLp~~-vtee~L~~~F~~~G~I~~v~v~~d~---~~~rG~aFV~F~~~ 340 (388)
.+....... .....++|||.|||.+ +|+++|+++|++||.|+.|+|+++. .++++||||+|.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 766543322 3455689999999999 9999999999999999999999985 47899999999444
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.92 E-value=8.9e-25 Score=206.67 Aligned_cols=132 Identities=18% Similarity=0.257 Sum_probs=118.1
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
.+.++|||+|||+++|+++|+++|+.||.|.+|+|.++ +|||||+|.+.++|++||+. ++..|.++.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 45578999999999999999999999999999999754 57999999999999999996 889999999999987
Q ss_pred CCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChhhHHHH
Q psy10362 277 NPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 277 ~~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~~~~a 346 (388)
.. .++|||+|||.++|+++|+++|++||.|+.|+|+.|.. ++++||||+|.+..++..|
T Consensus 94 ~~-----------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A 153 (261)
T 3sde_A 94 TH-----------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKA 153 (261)
T ss_dssp CC-----------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHH
T ss_pred cc-----------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHH
Confidence 53 36899999999999999999999999999999999854 7899999999666544444
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.91 E-value=6.5e-25 Score=209.87 Aligned_cols=137 Identities=11% Similarity=0.125 Sum_probs=114.1
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKP 275 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~ 275 (388)
...+.++|||+|||+++|+++|+++|+.||+|.+|+|++|+.+ ++|||||+|.+.++|++||+.++..|.++.|.|.+
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSH 114 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEE
Confidence 3456789999999999999999999999999999999998643 58999999999999999997788999999999887
Q ss_pred CCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEecCCC-CCeeEEEEEcCChhhHHHH
Q psy10362 276 CNPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYG-KVMEVVIMSPRT-IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 276 a~~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G-~I~~v~v~~d~~-~~rG~aFV~F~~~~~~~~a 346 (388)
+ ..++|||+|||.++|+++|+++|+.|| .|..|+|+.++. ++++||||+|.+...+..|
T Consensus 115 ~------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A 175 (292)
T 2ghp_A 115 L------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYC 175 (292)
T ss_dssp C------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHH
T ss_pred C------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHH
Confidence 5 357999999999999999999999999 999999998864 7899999999665443333
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.90 E-value=5.9e-24 Score=202.43 Aligned_cols=130 Identities=15% Similarity=0.184 Sum_probs=114.7
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCN 277 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~ 277 (388)
+.++|||+|||+++|+++|+++|+.|| |.+|++ ++++|||||+|.+.++|++||+. ++..+.++.|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 458899999999999999999999999 999988 34678999999999999999987 8899999999998743
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 278 PRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 278 ~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
..++|||+|||.++|+++|+++|++||.|..|+|+.++. ++++||||+|.+...+..|
T Consensus 94 -----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A 153 (284)
T 3smz_A 94 -----------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARA 153 (284)
T ss_dssp -----------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred -----------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHH
Confidence 346999999999999999999999999999999998853 6899999999665444443
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=1.4e-21 Score=162.40 Aligned_cols=105 Identities=18% Similarity=0.327 Sum_probs=73.2
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCNP 278 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~~ 278 (388)
..+|||+|||++++|++|+++|++||.|++|+|++|+ +.+||||||+|.+.++|++||+. ++..|.|++|+|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 3579999999999999999999999999999999985 45899999999999999999987 99999999999998876
Q ss_pred CCCCCC---CCCCCCCeEEEcCCCCCCCHHH
Q psy10362 279 RTLQKP---KKNSSFPKVFLGGLPSNVTETD 306 (388)
Q Consensus 279 ~~~~~~---~~~~~~~~lfV~nLp~~vtee~ 306 (388)
+..... ......++|||.||++++|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC----------------------------
T ss_pred ccccccccccccCCCCceEeCCCCCCccccc
Confidence 543322 2233446899999999999874
No 22
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=2.9e-19 Score=147.94 Aligned_cols=89 Identities=18% Similarity=0.257 Sum_probs=81.7
Q ss_pred CCCCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCC
Q psy10362 194 NPSGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTID 272 (388)
Q Consensus 194 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~ 272 (388)
....++.++|||+|||+++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+. ++..|.+++|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34446678999999999999999999999999999999999999999999999999999999999987 89999999999
Q ss_pred CCCCCCCCCC
Q psy10362 273 PKPCNPRTLQ 282 (388)
Q Consensus 273 v~~a~~~~~~ 282 (388)
|+++.++...
T Consensus 99 V~~a~~~~~~ 108 (115)
T 2cpz_A 99 VQLKRSKNDS 108 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEEcCCCCcC
Confidence 9999876544
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.78 E-value=1.3e-19 Score=146.76 Aligned_cols=80 Identities=21% Similarity=0.358 Sum_probs=75.9
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCN 277 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~ 277 (388)
+.++|||+|||+++||++|+++|++||+|.+|+|++|+.|+++||||||+|.+.++|++||+. ++..|.|++|+|++++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 346899999999999999999999999999999999999999999999999999999999987 8999999999999886
Q ss_pred C
Q psy10362 278 P 278 (388)
Q Consensus 278 ~ 278 (388)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 24
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=141.60 Aligned_cols=87 Identities=53% Similarity=0.948 Sum_probs=81.0
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKP 275 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~ 275 (388)
..++.++|||+|||+++++++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|++||+.++..|.+++|.|++
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 34667899999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred CCCCCCC
Q psy10362 276 CNPRTLQ 282 (388)
Q Consensus 276 a~~~~~~ 282 (388)
+.++...
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9876543
No 25
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=139.32 Aligned_cols=86 Identities=27% Similarity=0.477 Sum_probs=80.3
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPC 276 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a 276 (388)
..+.++|||+|||+++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||+.+++.|.+++|+|+++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35668999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred CCCCCC
Q psy10362 277 NPRTLQ 282 (388)
Q Consensus 277 ~~~~~~ 282 (388)
.++...
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 876543
No 26
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.76 E-value=6.3e-19 Score=145.59 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=76.9
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
++.++|||+||+++++|++|+++|++||+|++|+|++|+.|+++||||||+|.+.++|++||+. ++..|.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4458999999999999999999999999999999999999999999999999999999999997 999999999999887
Q ss_pred CCC
Q psy10362 277 NPR 279 (388)
Q Consensus 277 ~~~ 279 (388)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 543
No 27
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.2e-18 Score=140.00 Aligned_cols=87 Identities=17% Similarity=0.212 Sum_probs=80.2
Q ss_pred CCCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCC
Q psy10362 195 PSGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDP 273 (388)
Q Consensus 195 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v 273 (388)
....+.++|||+|||+++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||+. ++..|.+++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3345678999999999999999999999999999999999999999999999999999999999997 889999999999
Q ss_pred CCCCCCCC
Q psy10362 274 KPCNPRTL 281 (388)
Q Consensus 274 ~~a~~~~~ 281 (388)
+++.....
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99876543
No 28
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.7e-18 Score=139.97 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=80.2
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-C------CCCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-C------PHTLDG 268 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~------~~~l~G 268 (388)
...+.++|||+|||+++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||+. + +..|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 345678999999999999999999999999999999999999999999999999999999999997 7 889999
Q ss_pred CCCCCCCCCCCCCC
Q psy10362 269 RTIDPKPCNPRTLQ 282 (388)
Q Consensus 269 r~i~v~~a~~~~~~ 282 (388)
+.|+|+++.++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999876543
No 29
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=3.3e-18 Score=141.36 Aligned_cols=87 Identities=22% Similarity=0.285 Sum_probs=80.2
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPK 274 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~ 274 (388)
...+.++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.++++|++||+. ++..|.++.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999986 8899999999999
Q ss_pred CCCCCCCC
Q psy10362 275 PCNPRTLQ 282 (388)
Q Consensus 275 ~a~~~~~~ 282 (388)
++......
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 98776543
No 30
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.4e-18 Score=137.33 Aligned_cols=87 Identities=32% Similarity=0.409 Sum_probs=79.2
Q ss_pred CCCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCC
Q psy10362 195 PSGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPK 274 (388)
Q Consensus 195 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~ 274 (388)
....+.++|||+|||+++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+. .+.|.++.|.|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~ 88 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEE
Confidence 3345678999999999999999999999999999999999999999999999999999999999995 678999999999
Q ss_pred CCCCCCCC
Q psy10362 275 PCNPRTLQ 282 (388)
Q Consensus 275 ~a~~~~~~ 282 (388)
++..+...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99876543
No 31
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.6e-18 Score=139.19 Aligned_cols=86 Identities=24% Similarity=0.299 Sum_probs=79.8
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPK 274 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~ 274 (388)
...+.++|||+|||+++++++|+++|++||.|.+|+|+.|+.|++++|||||+|.+.++|++||+. ++..|.++.|+|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999996 8999999999999
Q ss_pred CCCCCCC
Q psy10362 275 PCNPRTL 281 (388)
Q Consensus 275 ~a~~~~~ 281 (388)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9876543
No 32
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=1.6e-18 Score=137.34 Aligned_cols=80 Identities=15% Similarity=0.196 Sum_probs=71.2
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccC--ceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYG--EVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCN 277 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~ 277 (388)
.+|||+|||+++++++|+++|++|| .|.+|+|+.|+.++++||||||+|.+.++|++||+. ++..|.|++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 999999999999999999999999999999999986 8899999999999987
Q ss_pred CCC
Q psy10362 278 PRT 280 (388)
Q Consensus 278 ~~~ 280 (388)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 33
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4.9e-18 Score=136.83 Aligned_cols=84 Identities=13% Similarity=0.185 Sum_probs=78.0
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPK 274 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~ 274 (388)
...+.++|||+|||+++++++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++||+. ++..|.+++|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 999999999999999999999987 8899999999999
Q ss_pred CCCCCC
Q psy10362 275 PCNPRT 280 (388)
Q Consensus 275 ~a~~~~ 280 (388)
++.+..
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 987654
No 34
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.74 E-value=1.2e-18 Score=136.71 Aligned_cols=81 Identities=41% Similarity=0.724 Sum_probs=75.5
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKP 275 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~ 275 (388)
...+.++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.+++.|+|++|.|++
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999998888889999998875
Q ss_pred C
Q psy10362 276 C 276 (388)
Q Consensus 276 a 276 (388)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 35
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.1e-18 Score=139.82 Aligned_cols=87 Identities=18% Similarity=0.281 Sum_probs=80.3
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPK 274 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~ 274 (388)
..++.++|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++||+. ++..|.++.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999996 8899999999999
Q ss_pred CCCCCCCC
Q psy10362 275 PCNPRTLQ 282 (388)
Q Consensus 275 ~a~~~~~~ 282 (388)
++.+....
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 98776543
No 36
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.1e-18 Score=141.88 Aligned_cols=85 Identities=26% Similarity=0.422 Sum_probs=78.1
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKP 275 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~ 275 (388)
...+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+.++..|.+++|+|++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 92 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNL 92 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999844589999999999
Q ss_pred CCCCC
Q psy10362 276 CNPRT 280 (388)
Q Consensus 276 a~~~~ 280 (388)
+....
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 87654
No 37
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=5.1e-18 Score=135.26 Aligned_cols=84 Identities=23% Similarity=0.416 Sum_probs=78.8
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
++.++|||+|||+++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||+. ++..|.+++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4568999999999999999999999999999999999999999999999999999999999996 999999999999998
Q ss_pred CCCCC
Q psy10362 277 NPRTL 281 (388)
Q Consensus 277 ~~~~~ 281 (388)
..+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 77654
No 38
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2e-18 Score=137.28 Aligned_cols=80 Identities=25% Similarity=0.410 Sum_probs=75.2
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
++.++|||+|||+++++++|+++|++||+|.+|+|++++.++++++||||+|.+.++|++||+. ++..|.+++|+|+++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 5568999999999999999999999999999999999999999999999999999999999986 889999999998876
Q ss_pred C
Q psy10362 277 N 277 (388)
Q Consensus 277 ~ 277 (388)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 39
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=1e-17 Score=142.08 Aligned_cols=85 Identities=22% Similarity=0.281 Sum_probs=79.2
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPK 274 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~ 274 (388)
..++.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+. ++..|.+++|+|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999996 8999999999999
Q ss_pred CCCCCC
Q psy10362 275 PCNPRT 280 (388)
Q Consensus 275 ~a~~~~ 280 (388)
++..+.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 987643
No 40
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.74 E-value=3.4e-19 Score=141.94 Aligned_cols=82 Identities=16% Similarity=0.272 Sum_probs=75.2
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccC-ceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh--CCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYG-EVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN--CPHTLDGRTIDPKPC 276 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~--~~~~l~Gr~i~v~~a 276 (388)
+++|||+|||+++||++|+++|++|| +|.+|+|++|+.|+++||||||+|.++++|++||+. +...|.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 899999999999999999999999999999999986 345799999999998
Q ss_pred CCCCC
Q psy10362 277 NPRTL 281 (388)
Q Consensus 277 ~~~~~ 281 (388)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 77543
No 41
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2e-17 Score=134.11 Aligned_cols=85 Identities=16% Similarity=0.213 Sum_probs=78.3
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhc-cCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCC-CCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSR-YGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHT-LDGRTIDP 273 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~-~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~-l~Gr~i~v 273 (388)
..+.++|||+|||+++++++|+++|++ ||.|.+|+|++|+ +++++|||||+|.+.++|++||+. ++.. |.+++|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 356689999999999999999999999 9999999999998 999999999999999999999997 7888 99999999
Q ss_pred CCCCCCCCC
Q psy10362 274 KPCNPRTLQ 282 (388)
Q Consensus 274 ~~a~~~~~~ 282 (388)
.++..+...
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999766543
No 42
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=4.8e-18 Score=141.04 Aligned_cols=82 Identities=21% Similarity=0.282 Sum_probs=76.6
Q ss_pred CCCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCC
Q psy10362 195 PSGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDP 273 (388)
Q Consensus 195 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v 273 (388)
...++.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+. ++..|.+++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4456678999999999999999999999999999999999999999999999999999999999997 889999999999
Q ss_pred CCC
Q psy10362 274 KPC 276 (388)
Q Consensus 274 ~~a 276 (388)
+++
T Consensus 115 ~~a 117 (118)
T 2khc_A 115 QLK 117 (118)
T ss_dssp EEC
T ss_pred Eec
Confidence 876
No 43
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=9.2e-18 Score=136.34 Aligned_cols=85 Identities=18% Similarity=0.248 Sum_probs=77.7
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCC---CCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDG---RTID 272 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~G---r~i~ 272 (388)
.++.++|||+|||+++++++|+++|++||.|.+|+|++++ +++++|||||+|.+.++|++||+. ++..+.+ +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3557899999999999999999999999999999999997 899999999999999999999996 8888888 9999
Q ss_pred CCCCCCCCCC
Q psy10362 273 PKPCNPRTLQ 282 (388)
Q Consensus 273 v~~a~~~~~~ 282 (388)
|+++......
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9998776543
No 44
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.3e-18 Score=138.25 Aligned_cols=84 Identities=32% Similarity=0.509 Sum_probs=78.6
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
++.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+. ++..|.+++|+|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5668999999999999999999999999999999999999999999999999999999999976 899999999999998
Q ss_pred CCCCC
Q psy10362 277 NPRTL 281 (388)
Q Consensus 277 ~~~~~ 281 (388)
.....
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 76553
No 45
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.7e-18 Score=135.95 Aligned_cols=82 Identities=23% Similarity=0.288 Sum_probs=77.0
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
.++.++|||+|||+++++++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|++||+. ++..|.+++|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 35568999999999999999999999999999999999999999999999999999999999997 88999999999998
Q ss_pred CCC
Q psy10362 276 CNP 278 (388)
Q Consensus 276 a~~ 278 (388)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 753
No 46
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=9.5e-18 Score=136.60 Aligned_cols=87 Identities=22% Similarity=0.342 Sum_probs=79.9
Q ss_pred CCCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeec-CCCCCceeEEEEEeCChHhHHHHHHh--CCCCCCCCCC
Q psy10362 195 PSGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKN-NETGRSRGFGFVTFADPNNVGVVIQN--CPHTLDGRTI 271 (388)
Q Consensus 195 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d-k~tg~skG~gFV~F~~~~~A~~Ai~~--~~~~l~Gr~i 271 (388)
....+.++|||+|||+++++++|+++|++||.|.+|+|+++ +.+++++|||||+|.+.++|++||+. ++..|.++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34466799999999999999999999999999999999999 78999999999999999999999986 6899999999
Q ss_pred CCCCCCCCCC
Q psy10362 272 DPKPCNPRTL 281 (388)
Q Consensus 272 ~v~~a~~~~~ 281 (388)
+|+++.....
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999987654
No 47
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.73 E-value=4.2e-18 Score=138.61 Aligned_cols=86 Identities=17% Similarity=0.238 Sum_probs=78.8
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCC---CCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTL---DGRTI 271 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l---~Gr~i 271 (388)
...+.++|||+|||+++++++|+++|++||+|.+|+|+.|+.+++++|||||+|.+.++|++||+. ++..+ .+++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 345678999999999999999999999999999999999999999999999999999999999996 77777 88999
Q ss_pred CCCCCCCCCC
Q psy10362 272 DPKPCNPRTL 281 (388)
Q Consensus 272 ~v~~a~~~~~ 281 (388)
+|+++.....
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999876553
No 48
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=135.28 Aligned_cols=86 Identities=19% Similarity=0.291 Sum_probs=78.9
Q ss_pred CCCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCC
Q psy10362 195 PSGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDP 273 (388)
Q Consensus 195 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v 273 (388)
....+.++|||+|||+++++++|+++|++||.|.+|+|+.+ ++++++||||+|.+.++|++||+. ++..|.+++|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34456799999999999999999999999999999999998 899999999999999999999997 899999999999
Q ss_pred CCCCCCCCC
Q psy10362 274 KPCNPRTLQ 282 (388)
Q Consensus 274 ~~a~~~~~~ 282 (388)
.++..+...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2d9p_A 88 ALAQRKEER 96 (103)
T ss_dssp EECSSCCCC
T ss_pred EEecccccC
Confidence 999876543
No 49
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=4.8e-18 Score=137.76 Aligned_cols=85 Identities=12% Similarity=0.198 Sum_probs=77.9
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKP 275 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~ 275 (388)
...+.++|||+|||+++++++|+++|++|+ |.+|+|++|+.+++++|||||+|.+.++|++||+.++..|.+++|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDI 89 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEE
Confidence 345568999999999999999999999996 9999999999999999999999999999999995589999999999999
Q ss_pred CCCCCC
Q psy10362 276 CNPRTL 281 (388)
Q Consensus 276 a~~~~~ 281 (388)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 877553
No 50
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.2e-18 Score=136.91 Aligned_cols=85 Identities=20% Similarity=0.325 Sum_probs=79.2
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
.+.++|||+|||+++++++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|++||+. ++..|.+++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 5568999999999999999999999999999999999998999999999999999999999976 889999999999998
Q ss_pred CCCCCC
Q psy10362 277 NPRTLQ 282 (388)
Q Consensus 277 ~~~~~~ 282 (388)
..+...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 876543
No 51
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=6.9e-18 Score=135.60 Aligned_cols=84 Identities=20% Similarity=0.226 Sum_probs=77.7
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCcee-EEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCC----
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVI-DCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRT---- 270 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~-~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~---- 270 (388)
..+.++|||+|||+++++++|+++|++||+|. +|+|++|+.+++++|||||+|.+.++|++||+. ++..|.++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 35568999999999999999999999999999 999999999999999999999999999999997 889999999
Q ss_pred CCCCCCCCCC
Q psy10362 271 IDPKPCNPRT 280 (388)
Q Consensus 271 i~v~~a~~~~ 280 (388)
|+|.++....
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 8888886543
No 52
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.9e-18 Score=138.61 Aligned_cols=85 Identities=24% Similarity=0.308 Sum_probs=79.5
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
++.++|||+|||+++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+. ++..|.+++|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 5668999999999999999999999999999999999999999999999999999999999986 899999999999998
Q ss_pred CCCCCC
Q psy10362 277 NPRTLQ 282 (388)
Q Consensus 277 ~~~~~~ 282 (388)
.+....
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876544
No 53
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=8.7e-18 Score=135.24 Aligned_cols=83 Identities=18% Similarity=0.205 Sum_probs=76.8
Q ss_pred CCCCCCCCCCcccCCCcCcHHHHHHHHhccCceeE--------EEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCC
Q psy10362 195 PSGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVID--------CVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHT 265 (388)
Q Consensus 195 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~ 265 (388)
...+..++|||+|||+++++++|+++|++||.|.+ |+|++|+.+++++|||||+|.+.++|++||+. ++..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34456789999999999999999999999999999 99999999999999999999999999999986 9999
Q ss_pred CCCCCCCCCCCC
Q psy10362 266 LDGRTIDPKPCN 277 (388)
Q Consensus 266 l~Gr~i~v~~a~ 277 (388)
|.+++|+|++++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999998763
No 54
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.1e-18 Score=137.06 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=76.1
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeE-EEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVID-CVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~-v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a 276 (388)
.+.++|||+|||+++++++|+++|++||.|.+ |+|+.| .+++++|||||+|.++++|++||+.++..|.+|.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 45689999999999999999999999999987 888888 7999999999999999999999999889999999999887
Q ss_pred CCCCC
Q psy10362 277 NPRTL 281 (388)
Q Consensus 277 ~~~~~ 281 (388)
.....
T Consensus 92 ~~~~~ 96 (104)
T 1wg5_A 92 SRAEV 96 (104)
T ss_dssp CTTTS
T ss_pred CHHHH
Confidence 66543
No 55
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.72 E-value=3e-18 Score=134.19 Aligned_cols=82 Identities=24% Similarity=0.299 Sum_probs=75.0
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
++.++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+. ++..+.+++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 3558899999999999999999999999999999999999999999999999999999999997 889999999999987
Q ss_pred CCC
Q psy10362 277 NPR 279 (388)
Q Consensus 277 ~~~ 279 (388)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 653
No 56
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=8.5e-18 Score=134.82 Aligned_cols=85 Identities=21% Similarity=0.376 Sum_probs=78.1
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCC---CCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNE---TGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDP 273 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~---tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v 273 (388)
.+.++|||+|||+++++++|+++|++||+|.+|+|+.++. |++++|||||+|.+.++|++||+. ++..|.+++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999999999999999999999999999999876 669999999999999999999997 889999999999
Q ss_pred CCCCCCCCC
Q psy10362 274 KPCNPRTLQ 282 (388)
Q Consensus 274 ~~a~~~~~~ 282 (388)
+++......
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999776543
No 57
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.72 E-value=2.3e-18 Score=142.31 Aligned_cols=103 Identities=16% Similarity=0.196 Sum_probs=91.3
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
+..++|||+|||+++++++|+++|++||.|.+|+|+++ +.++|||||+|.+.++|++||+. ++..+.++.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45689999999999999999999999999999999976 34589999999999999999996 999999999999998
Q ss_pred CCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCC
Q psy10362 277 NPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGK 316 (388)
Q Consensus 277 ~~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~ 316 (388)
.+.... .+++...++++|.++|++||.
T Consensus 83 ~~~~~~-------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRAF-------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHHT-------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChhh-------------hhhhHhHhHHHHHHHHHHhCC
Confidence 764422 467788899999999999974
No 58
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.5e-18 Score=138.45 Aligned_cols=81 Identities=12% Similarity=0.086 Sum_probs=73.8
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~ 277 (388)
.+.++|||+|||+++||+||+++|+.||. ++|+|++|+ ++++||||||+|.++++|++||+.++..|.+|.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 45689999999999999999999999995 599999997 8999999999999999999999778899999999998776
Q ss_pred CCC
Q psy10362 278 PRT 280 (388)
Q Consensus 278 ~~~ 280 (388)
...
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 59
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=136.76 Aligned_cols=84 Identities=21% Similarity=0.401 Sum_probs=78.6
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPK 274 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~ 274 (388)
..++.++|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++||+. ++..|.|++|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345668999999999999999999999999999999999999999999999999999999999986 8999999999999
Q ss_pred CCCCC
Q psy10362 275 PCNPR 279 (388)
Q Consensus 275 ~a~~~ 279 (388)
++..+
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 98765
No 60
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=9.1e-18 Score=142.41 Aligned_cols=84 Identities=18% Similarity=0.208 Sum_probs=77.4
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCceeE--EEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCC----CCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVID--CVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPH----TLDG 268 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~--v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~----~l~G 268 (388)
.....++|||+|||+++||++|+++|++||.|.. |+|++|+.|+++||||||+|.+. +|++||+. ++. .|.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456689999999999999999999999999976 99999999999999999999999 99999997 888 9999
Q ss_pred CCCCCCCCCCCC
Q psy10362 269 RTIDPKPCNPRT 280 (388)
Q Consensus 269 r~i~v~~a~~~~ 280 (388)
++|+|+++.+..
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999987654
No 61
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9e-18 Score=138.31 Aligned_cols=87 Identities=13% Similarity=0.165 Sum_probs=80.1
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCcee--------EEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVI--------DCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTL 266 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~--------~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l 266 (388)
...+.++|||+|||+++++++|+++|++||.|. +|+|+.|+.+++++|||||+|.+.++|++||+. ++..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999999 699999999999999999999999999999996 99999
Q ss_pred CCCCCCCCCCCCCCCC
Q psy10362 267 DGRTIDPKPCNPRTLQ 282 (388)
Q Consensus 267 ~Gr~i~v~~a~~~~~~ 282 (388)
.+++|+|+++......
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999998876543
No 62
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=134.22 Aligned_cols=87 Identities=20% Similarity=0.417 Sum_probs=78.0
Q ss_pred CCCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCC
Q psy10362 195 PSGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDP 273 (388)
Q Consensus 195 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v 273 (388)
....+.++|||+|||+++++++|+++|++||.|.+|+|++++. .+++||||+|.+.++|++||+. ++..|.++.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3445679999999999999999999999999999999999864 3899999999999999999997 899999999999
Q ss_pred CCCCCCCCCC
Q psy10362 274 KPCNPRTLQK 283 (388)
Q Consensus 274 ~~a~~~~~~~ 283 (388)
+++..+....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cq3_A 88 NNATARVMTN 97 (103)
T ss_dssp EECCSSCCCC
T ss_pred EEcccCCCCC
Confidence 9998766443
No 63
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.7e-18 Score=137.15 Aligned_cols=85 Identities=12% Similarity=0.208 Sum_probs=77.6
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCC-CCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNET-GRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~t-g~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~ 275 (388)
..+.++|||+|||+++++++|+++|++|| |.+|+|++|+.+ ++++|||||+|.+.++|++||..++..|.++.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 35568999999999999999999999999 999999999988 9999999999999999999994488999999999999
Q ss_pred CCCCCCC
Q psy10362 276 CNPRTLQ 282 (388)
Q Consensus 276 a~~~~~~ 282 (388)
+..+...
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 8776543
No 64
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=4.5e-18 Score=132.60 Aligned_cols=80 Identities=24% Similarity=0.285 Sum_probs=75.4
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
++.++|||+|||+++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||+. ++..|.+++|+|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 5668999999999999999999999999999999999999999999999999999999999986 999999999998876
Q ss_pred C
Q psy10362 277 N 277 (388)
Q Consensus 277 ~ 277 (388)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 65
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.7e-17 Score=135.57 Aligned_cols=82 Identities=22% Similarity=0.219 Sum_probs=76.0
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
..+.++|||+|||+++++++|+++|++||.|++|+|++++ ++++++||||+|.+.++|++||+. ++..|.++.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3556899999999999999999999999999999999997 699999999999999999999996 99999999999998
Q ss_pred CCCC
Q psy10362 276 CNPR 279 (388)
Q Consensus 276 a~~~ 279 (388)
+...
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 7654
No 66
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=5e-18 Score=139.63 Aligned_cols=86 Identities=42% Similarity=0.652 Sum_probs=77.1
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKP 275 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~ 275 (388)
...+.++|||+|||+++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||+.++..|.|+.|.|++
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999877999999999999
Q ss_pred CCCCCC
Q psy10362 276 CNPRTL 281 (388)
Q Consensus 276 a~~~~~ 281 (388)
+.++..
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 876643
No 67
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=7.1e-18 Score=134.41 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=74.8
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
.++.++|||+|||+++++++|+++|++||+|++|+|++|+. ++++|||||+|.+.++|++||+. ++..|.+++|+|++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 35668999999999999999999999999999999999975 99999999999999999999996 89999999999988
Q ss_pred CC
Q psy10362 276 CN 277 (388)
Q Consensus 276 a~ 277 (388)
++
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 68
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.71 E-value=1.8e-18 Score=139.21 Aligned_cols=81 Identities=21% Similarity=0.256 Sum_probs=73.3
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCc--eeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCC----CCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGE--VIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPH----TLDGRT 270 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~--I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~----~l~Gr~ 270 (388)
..-.||||+|||+++|+++|+++|++||. |.+|+|++|+.|+++||||||+|.+.++|++||+. ++. .|+||+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45678999999999999999999999995 67999999999999999999999999999999997 543 589999
Q ss_pred CCCCCCCC
Q psy10362 271 IDPKPCNP 278 (388)
Q Consensus 271 i~v~~a~~ 278 (388)
|.|.+++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99998763
No 69
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-17 Score=135.87 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=77.2
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
.+.++|||+|||+++++++|+++|++||.|.+|+|+.|+.+++++|||||+|.+.++|++||+. ++..|.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 4568899999999999999999999999999999999999999999999999999999999996 899999999999988
Q ss_pred CCC
Q psy10362 277 NPR 279 (388)
Q Consensus 277 ~~~ 279 (388)
..+
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 654
No 70
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.3e-17 Score=134.18 Aligned_cols=84 Identities=17% Similarity=0.203 Sum_probs=74.9
Q ss_pred CCCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCC
Q psy10362 195 PSGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDP 273 (388)
Q Consensus 195 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v 273 (388)
....+.++|||+|||+++++++|+++|++||.|++|+|..+ +++++||||+|.+.++|++||+. ++..|.+++|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999654 45899999999999999999976 889999999999
Q ss_pred CCCCCCCC
Q psy10362 274 KPCNPRTL 281 (388)
Q Consensus 274 ~~a~~~~~ 281 (388)
+++.....
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4a_A 94 EFPRSGRG 101 (109)
T ss_dssp ECCCCCCC
T ss_pred EEcccCCC
Confidence 99876543
No 71
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.71 E-value=2.7e-17 Score=143.28 Aligned_cols=114 Identities=17% Similarity=0.204 Sum_probs=81.9
Q ss_pred EEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CC-CCCCC------CCCCCCCCCC-CCCCCCCCCCCCCeEEEcCCC
Q psy10362 229 DCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CP-HTLDG------RTIDPKPCNP-RTLQKPKKNSSFPKVFLGGLP 299 (388)
Q Consensus 229 ~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~-~~l~G------r~i~v~~a~~-~~~~~~~~~~~~~~lfV~nLp 299 (388)
.++|+++.. +++||+||+|.+.++|++|++. ++ ..+.+ +......... ............++|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 577888754 6999999999999999999975 22 12222 1111111111 111122233456899999999
Q ss_pred CCCCHHHHHHHhhcCCCeeEEEEecCC--CCCeeEEEEEcCChhhHH
Q psy10362 300 SNVTETDLRTFFNRYGKVMEVVIMSPR--TIRAGITRVPTQELPVQK 344 (388)
Q Consensus 300 ~~vtee~L~~~F~~~G~I~~v~v~~d~--~~~rG~aFV~F~~~~~~~ 344 (388)
.++|+++|+++|++||.|+.|+|++|+ .++++||||+|.+..+++
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 126 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 126 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHH
Confidence 999999999999999999999999985 379999999996554333
No 72
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.71 E-value=9.1e-18 Score=130.29 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=75.4
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCNPR 279 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~~~ 279 (388)
.+|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++||+. ++..+.+++|+|+++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 5799999999999999999999999999999999999999999999999999999999997 899999999999998764
No 73
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.71 E-value=5.9e-18 Score=129.04 Aligned_cols=75 Identities=29% Similarity=0.449 Sum_probs=71.7
Q ss_pred CCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCC
Q psy10362 202 KPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPC 276 (388)
Q Consensus 202 ~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a 276 (388)
+|||+|||+++++++|+++|++||+|.+|+|+.++.+++++|||||+|.++++|++||+.++..|.|++|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999999999999999999999999999999988889999999998764
No 74
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=5.2e-18 Score=136.95 Aligned_cols=94 Identities=20% Similarity=0.279 Sum_probs=81.0
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCNPR 279 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~~~ 279 (388)
++|||+|||+++++++|+++|++||+|.+|+|+.+ +++||||+|.+.++|++||+. ++..+.++.|+|+++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999987 678999999999999999996 888999999999998775
Q ss_pred CCCCC-----CCCCCCCeEEEcCCC
Q psy10362 280 TLQKP-----KKNSSFPKVFLGGLP 299 (388)
Q Consensus 280 ~~~~~-----~~~~~~~~lfV~nLp 299 (388)
..... .......+|||++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 53222 122235789999996
No 75
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.7e-18 Score=134.81 Aligned_cols=85 Identities=18% Similarity=0.260 Sum_probs=78.8
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEE-EEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDC-VVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v-~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
.+.++|||+|||+++++++|+++|++||.|.+| +|++|+.+++++|||||+|.++++|++||+. ++..|.+++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345899999999999999999999999999999 9999999999999999999999999999996 88999999999999
Q ss_pred CCCCCCC
Q psy10362 276 CNPRTLQ 282 (388)
Q Consensus 276 a~~~~~~ 282 (388)
+.+....
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 8776543
No 76
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5.1e-18 Score=136.15 Aligned_cols=82 Identities=15% Similarity=0.216 Sum_probs=76.0
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
+..++|||+|||+++++++|+++|++||.|.+++++.++.+++++|||||+|.++++|++||+. ++..|.+++|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 4568899999999999999999999999999999999999999999999999999999999987 888999999999987
Q ss_pred CCC
Q psy10362 277 NPR 279 (388)
Q Consensus 277 ~~~ 279 (388)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 643
No 77
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.70 E-value=4.4e-17 Score=128.97 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=75.4
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
++.++|||+|||+++++++|+++|++||+|.+|+|+++ ++++++||||+|.+.++|++||+. ++..|.+++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 55689999999999999999999999999999999985 789999999999999999999997 899999999999998
Q ss_pred CCCC
Q psy10362 277 NPRT 280 (388)
Q Consensus 277 ~~~~ 280 (388)
....
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7654
No 78
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.2e-17 Score=133.70 Aligned_cols=84 Identities=10% Similarity=0.172 Sum_probs=76.1
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPK 274 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~ 274 (388)
...+.++|||+|||+++++++|+++|++||.|++|+|++|+.+ ++|||||+|.+.++|++||+. ++..|.+++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 3456789999999999999999999999999999999998544 689999999999999999996 8899999999999
Q ss_pred CCCCCCC
Q psy10362 275 PCNPRTL 281 (388)
Q Consensus 275 ~a~~~~~ 281 (388)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqi_A 89 WATTPSS 95 (103)
T ss_dssp ECCCTTC
T ss_pred ECCCCcc
Confidence 9887553
No 79
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-17 Score=141.76 Aligned_cols=87 Identities=18% Similarity=0.292 Sum_probs=80.2
Q ss_pred CCCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCC
Q psy10362 195 PSGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDP 273 (388)
Q Consensus 195 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v 273 (388)
....+.++|||+|||+++++++|+++|+.||+|++|+|++|+.+++++|||||+|.+.++|++||+. ++..|.+++|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3345678999999999999999999999999999999999999999999999999999999999997 889999999999
Q ss_pred CCCCCCCC
Q psy10362 274 KPCNPRTL 281 (388)
Q Consensus 274 ~~a~~~~~ 281 (388)
.++.....
T Consensus 117 ~~a~~~~~ 124 (139)
T 1u6f_A 117 ALAASGHQ 124 (139)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99876543
No 80
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=9.7e-18 Score=134.20 Aligned_cols=81 Identities=21% Similarity=0.272 Sum_probs=77.0
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCNP 278 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~~ 278 (388)
.++|||+|||+++++++|+++|++||.|.+|+|+.|+.+++++|||||+|.+.++|++||+. ++..|.++.|+|+++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 47899999999999999999999999999999999999999999999999999999999986 88999999999999877
Q ss_pred CC
Q psy10362 279 RT 280 (388)
Q Consensus 279 ~~ 280 (388)
..
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 81
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=8.5e-18 Score=128.56 Aligned_cols=76 Identities=42% Similarity=0.667 Sum_probs=72.1
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPC 276 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a 276 (388)
++|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++||+..+..+.|++|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5799999999999999999999999999999999999999999999999999999999998559999999998876
No 82
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.6e-18 Score=130.99 Aligned_cols=80 Identities=15% Similarity=0.262 Sum_probs=74.7
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
++.++|||+|||+++++++|+++|++||+|.+|+|+.++.+++++|||||+|.+.++|++||+. ++..|.++.|++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4568999999999999999999999999999999999999999999999999999999999996 888999999988775
Q ss_pred C
Q psy10362 277 N 277 (388)
Q Consensus 277 ~ 277 (388)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 83
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.70 E-value=2.9e-17 Score=136.63 Aligned_cols=84 Identities=21% Similarity=0.406 Sum_probs=78.2
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
..+.++|||+|||+++++++|+++|++||.|++|+|+.|+ +++++|||||+|.+.++|++||+. ++..|.+++|+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3566899999999999999999999999999999999998 999999999999999999999997 88999999999999
Q ss_pred CCCCCC
Q psy10362 276 CNPRTL 281 (388)
Q Consensus 276 a~~~~~ 281 (388)
+.....
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 876653
No 84
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=4.1e-18 Score=135.77 Aligned_cols=80 Identities=15% Similarity=0.239 Sum_probs=74.2
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
+..++|||+|||+++++++|+++|++||.|.+++++.++.+++++|||||+|.++++|++||+. ++..|.+++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3458999999999999999999999999999999999999999999999999999999999996 999999999999886
Q ss_pred C
Q psy10362 277 N 277 (388)
Q Consensus 277 ~ 277 (388)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 85
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=1.3e-17 Score=142.52 Aligned_cols=87 Identities=26% Similarity=0.370 Sum_probs=80.0
Q ss_pred CCCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCC
Q psy10362 195 PSGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDP 273 (388)
Q Consensus 195 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v 273 (388)
....+.++|||+|||+++++++|+++|++||.|++|+|+.|+.+++++|||||+|.+.++|++||+. ++..|.+++|+|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3445678999999999999999999999999999999999999999999999999999999999987 889999999999
Q ss_pred CCCCCCCC
Q psy10362 274 KPCNPRTL 281 (388)
Q Consensus 274 ~~a~~~~~ 281 (388)
+++.....
T Consensus 122 ~~a~~~~~ 129 (135)
T 2lea_A 122 QMARYGRP 129 (135)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99876543
No 86
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-17 Score=135.52 Aligned_cols=80 Identities=8% Similarity=0.002 Sum_probs=74.4
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~ 277 (388)
.+.++|||+|||+++|+++|+++|++||+|.+|+|++|+. +++||||||+|.++++|++||+.+++.|.|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 4568999999999999999999999999999999999987 999999999999999999999988899999999998754
Q ss_pred C
Q psy10362 278 P 278 (388)
Q Consensus 278 ~ 278 (388)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 3
No 87
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=6.4e-18 Score=128.75 Aligned_cols=75 Identities=24% Similarity=0.320 Sum_probs=71.5
Q ss_pred CCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCC
Q psy10362 202 KPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPC 276 (388)
Q Consensus 202 ~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a 276 (388)
+|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++||+.+++.+.|++|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 689999999999999999999999999999999999999999999999999999999999889999999988754
No 88
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-17 Score=137.96 Aligned_cols=85 Identities=33% Similarity=0.617 Sum_probs=79.2
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~ 277 (388)
.+.++|||+|||+++++++|+++|++||.|.+|+|+.|+.+++++|||||+|.+.++|++||+.++..|.+++|+|+++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 34589999999999999999999999999999999999999999999999999999999999998889999999999998
Q ss_pred CCCCC
Q psy10362 278 PRTLQ 282 (388)
Q Consensus 278 ~~~~~ 282 (388)
++...
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 76543
No 89
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-17 Score=135.01 Aligned_cols=84 Identities=13% Similarity=0.222 Sum_probs=73.9
Q ss_pred CCCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecC-CCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCC
Q psy10362 195 PSGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNN-ETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDP 273 (388)
Q Consensus 195 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk-~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v 273 (388)
......++|||+|||+++++++|+++|++|| |.+|+|++++ .+++++|||||+|.+.++|++||..++..|.|+.|+|
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V 92 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRV 92 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEE
Confidence 3346679999999999999999999999999 9999999998 6899999999999999999999955999999999999
Q ss_pred CCCCCC
Q psy10362 274 KPCNPR 279 (388)
Q Consensus 274 ~~a~~~ 279 (388)
+++..+
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 998764
No 90
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.5e-17 Score=133.95 Aligned_cols=80 Identities=11% Similarity=0.132 Sum_probs=71.6
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-C--CCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-C--PHTLDGRTIDPK 274 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~--~~~l~Gr~i~v~ 274 (388)
++.++|||+|||+++||++|+++|++||.|++|+|+++ ||||||+|.+.++|++||+. + +.+|.|++|+|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45689999999999999999999999999999999976 58999999999999999995 3 478999999999
Q ss_pred CCCCCCCCC
Q psy10362 275 PCNPRTLQK 283 (388)
Q Consensus 275 ~a~~~~~~~ 283 (388)
++..+....
T Consensus 88 ~A~~~~~~~ 96 (105)
T 1sjq_A 88 FSNHKELKT 96 (105)
T ss_dssp CCSSSSCCC
T ss_pred EcCCCCCCc
Confidence 998766543
No 91
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-17 Score=135.48 Aligned_cols=83 Identities=19% Similarity=0.355 Sum_probs=77.6
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
.+.++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+. ++..|.++.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 4568999999999999999999999999999999999999999999999999999999999986 889999999999988
Q ss_pred CCCC
Q psy10362 277 NPRT 280 (388)
Q Consensus 277 ~~~~ 280 (388)
....
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 7653
No 92
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.4e-18 Score=140.40 Aligned_cols=83 Identities=11% Similarity=0.085 Sum_probs=76.6
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCce-eEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEV-IDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I-~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~ 275 (388)
..+.++|||+|||+++++++|+++|+.||.| .+|+|++|+ +++++|||||+|.++++|++||+.++..|.++.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3556899999999999999999999999999 899999998 99999999999999999999999988999999999988
Q ss_pred CCCCC
Q psy10362 276 CNPRT 280 (388)
Q Consensus 276 a~~~~ 280 (388)
+....
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 76543
No 93
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.69 E-value=9.1e-18 Score=135.85 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=75.5
Q ss_pred CCCCCcccCCC------cCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCC-CCC
Q psy10362 200 AGKPPADYSAY------GTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDG-RTI 271 (388)
Q Consensus 200 ~~~vfVgnLp~------~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~G-r~i 271 (388)
.++|||+|||+ ++++++|+++|++||.|.+|+|++|+.|+++||||||+|.+.++|++||+. ++..|.+ +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 47899999999 999999999999999999999999999999999999999999999999986 9999999 999
Q ss_pred CCCCCCCC
Q psy10362 272 DPKPCNPR 279 (388)
Q Consensus 272 ~v~~a~~~ 279 (388)
+|.++.+.
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99887643
No 94
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-17 Score=139.41 Aligned_cols=82 Identities=15% Similarity=0.207 Sum_probs=75.3
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPC 276 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a 276 (388)
..+.++|||+|||+++++++|+++|+.||.|.++.++.++.+++++|||||+|.+.++|++||+.++..|.++.|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 35568999999999999999999999999999977777778999999999999999999999998889999999999887
Q ss_pred CC
Q psy10362 277 NP 278 (388)
Q Consensus 277 ~~ 278 (388)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 95
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.68 E-value=1.9e-17 Score=130.11 Aligned_cols=81 Identities=21% Similarity=0.343 Sum_probs=75.5
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNP 278 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~~ 278 (388)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++||..++..|.++.|+|.++..
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 35789999999999999999999999999999999999999999999999999999999994499999999999998865
Q ss_pred C
Q psy10362 279 R 279 (388)
Q Consensus 279 ~ 279 (388)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 96
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.68 E-value=2.2e-17 Score=144.73 Aligned_cols=82 Identities=20% Similarity=0.292 Sum_probs=75.8
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccC--ceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYG--EVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPK 274 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~ 274 (388)
.+.++|||+|||++++|++|+++|++|| .|.+|+|+.|+.|+++||||||+|.+.++|++||+. ++..|.|+.|.|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 999999999999999999999999999999999998 8899999999999
Q ss_pred CCCCC
Q psy10362 275 PCNPR 279 (388)
Q Consensus 275 ~a~~~ 279 (388)
++.+.
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 88653
No 97
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=1.5e-17 Score=140.71 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=73.1
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCcee--EEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVI--DCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKP 275 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~--~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~ 275 (388)
.+.++|||+|||+++||++|+++|+.| .|+ +|+|++|+. +++||||||+|.++++|++||+.++..|.+|.|+|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 456889999999999999999999999 677 899999976 9999999999999999999999888999999999987
Q ss_pred CCCC
Q psy10362 276 CNPR 279 (388)
Q Consensus 276 a~~~ 279 (388)
+..+
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 7543
No 98
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.3e-17 Score=133.21 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=77.2
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCc-eeEEEEe-ecCCCCCceeEEEEEeCChHhHHHHHHh-C--CCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGE-VIDCVVM-KNNETGRSRGFGFVTFADPNNVGVVIQN-C--PHTLDGRTID 272 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~-I~~v~i~-~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~--~~~l~Gr~i~ 272 (388)
.+.++|||+|||+++++++|+++|++||. |.+|+|+ .|+.+++++|||||+|.+.++|++||+. + ...|.+++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45689999999999999999999999998 9999998 8888999999999999999999999997 4 4899999999
Q ss_pred CCCCCCCCC
Q psy10362 273 PKPCNPRTL 281 (388)
Q Consensus 273 v~~a~~~~~ 281 (388)
|.++.++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987654
No 99
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.67 E-value=1.3e-17 Score=139.09 Aligned_cols=82 Identities=16% Similarity=0.189 Sum_probs=75.1
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCc---eeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGE---VIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDP 273 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~---I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v 273 (388)
..+.++|||+|||+++|+++|+++|+.||. |.+|+|++|+. +++||||||+|.++++|++||+.++..|.+|.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 356688999999999999999999999999 89999999976 99999999999999999999998889999999999
Q ss_pred CCCCCC
Q psy10362 274 KPCNPR 279 (388)
Q Consensus 274 ~~a~~~ 279 (388)
.++...
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 876543
No 100
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.67 E-value=3.8e-17 Score=137.17 Aligned_cols=85 Identities=15% Similarity=0.174 Sum_probs=78.9
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
..+.++|||+|||+++++++|+++|++||.|.+|+|+.|+.+++++|||||+|.+.++|++||+. ++..|.++.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999986 99999999999999
Q ss_pred CCCCCC
Q psy10362 276 CNPRTL 281 (388)
Q Consensus 276 a~~~~~ 281 (388)
+.....
T Consensus 99 a~~~~~ 104 (126)
T 3ex7_B 99 CFVRGP 104 (126)
T ss_dssp SEESSS
T ss_pred ecCCCC
Confidence 876543
No 101
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.67 E-value=2.4e-17 Score=135.10 Aligned_cols=84 Identities=17% Similarity=0.171 Sum_probs=78.0
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
..+.++|||+|||+++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++||+. ++..|.+++|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 35568899999999999999999999999999999999999999999999999999999999996 89999999999998
Q ss_pred CCCCC
Q psy10362 276 CNPRT 280 (388)
Q Consensus 276 a~~~~ 280 (388)
+..+.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 86543
No 102
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-17 Score=136.82 Aligned_cols=82 Identities=21% Similarity=0.257 Sum_probs=76.0
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~ 277 (388)
.+.++|||+|||+++++++|+++|++||.|.+|+|+.|+.+++++|||||+|.+.++|++||..+++.|.++.|+|+++.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 34579999999999999999999999999999999999999999999999999999999999559999999999998875
Q ss_pred CC
Q psy10362 278 PR 279 (388)
Q Consensus 278 ~~ 279 (388)
.+
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 43
No 103
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=4.6e-17 Score=138.62 Aligned_cols=80 Identities=24% Similarity=0.284 Sum_probs=74.2
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
..+.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+. ++..|.+++|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999986 88899999998876
Q ss_pred C
Q psy10362 276 C 276 (388)
Q Consensus 276 a 276 (388)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 4
No 104
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2e-16 Score=130.43 Aligned_cols=76 Identities=16% Similarity=0.241 Sum_probs=68.1
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTID 272 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~ 272 (388)
...+.++|||+|||+++++++|+++|++||.|.+|+|++|+ +++++|||||+|.+.++|++||+. ++..|.++.+.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 34567899999999999999999999999999999999998 999999999999999999999996 77778554443
No 105
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.67 E-value=4.3e-17 Score=132.82 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=74.4
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
++.++|||+|||+++++++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++||+. ++..|.++.|+|+++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 556899999999999999999999999999999999998 999999999999999999999997 999999999998876
Q ss_pred C
Q psy10362 277 N 277 (388)
Q Consensus 277 ~ 277 (388)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 3
No 106
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-17 Score=137.09 Aligned_cols=81 Identities=17% Similarity=0.298 Sum_probs=73.5
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPC 276 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a 276 (388)
..+.++|||+|||++++|+||+++|+.| .|.+|+|++|+. ++++|||||+|.++++|++||+.++..|.+|.|+|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 3455789999999999999999999999 899999999975 99999999999999999999977899999999999777
Q ss_pred CCC
Q psy10362 277 NPR 279 (388)
Q Consensus 277 ~~~ 279 (388)
..+
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 543
No 107
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=2.6e-17 Score=141.53 Aligned_cols=81 Identities=14% Similarity=0.094 Sum_probs=73.6
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~ 277 (388)
.+.++|||+|||+++||+||+++|++|| |++|+|++|+. +++||||||+|.++++|++||+.++..|.+|.|+|..+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 4568999999999999999999999999 77999999975 999999999999999999999668899999999998876
Q ss_pred CCC
Q psy10362 278 PRT 280 (388)
Q Consensus 278 ~~~ 280 (388)
...
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 654
No 108
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.4e-17 Score=128.43 Aligned_cols=81 Identities=14% Similarity=0.270 Sum_probs=75.5
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPC 276 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a 276 (388)
..+.++|||+|||+++++++|+++|+.| .|.+|+|+++ .+++++|||||+|.+.++|++||+.++..|.++.|+|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEEC
Confidence 3556899999999999999999999999 9999999999 7899999999999999999999998888999999999988
Q ss_pred CCC
Q psy10362 277 NPR 279 (388)
Q Consensus 277 ~~~ 279 (388)
..+
T Consensus 85 ~~~ 87 (91)
T 2dgw_A 85 KSG 87 (91)
T ss_dssp SSC
T ss_pred CcC
Confidence 665
No 109
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.66 E-value=1.9e-17 Score=130.69 Aligned_cols=79 Identities=25% Similarity=0.463 Sum_probs=72.5
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCNPR 279 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~~~ 279 (388)
++|||+|||+++++++|+++|++||+|.+|+|++|+.+++++|||||+|.+.+ |++|++. ++..+.|++|+|+++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999999999999999999999 9999997 889999999999998765
Q ss_pred C
Q psy10362 280 T 280 (388)
Q Consensus 280 ~ 280 (388)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 110
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.66 E-value=9.1e-17 Score=139.99 Aligned_cols=83 Identities=14% Similarity=0.136 Sum_probs=78.2
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
.+.++|||+|||+++++++|+++|++||+|++|+|+.++.++++++||||+|.++++|++||+. ++..|.+++|+|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4568999999999999999999999999999999999999999999999999999999999997 889999999999998
Q ss_pred CCCC
Q psy10362 277 NPRT 280 (388)
Q Consensus 277 ~~~~ 280 (388)
....
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7643
No 111
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.66 E-value=3.6e-16 Score=130.96 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=77.8
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
....++|||+|||+++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+. ++..|.+++|+|++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3556899999999999999999999999999999999998 999999999999999999999996 88999999999999
Q ss_pred CCCCCC
Q psy10362 276 CNPRTL 281 (388)
Q Consensus 276 a~~~~~ 281 (388)
+.....
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 876543
No 112
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=9.7e-17 Score=132.16 Aligned_cols=84 Identities=14% Similarity=0.145 Sum_probs=76.6
Q ss_pred CCCCCCCCcccCCCcCcHHHHH---HHHhccCceeEEEEeecCCCC---CceeEEEEEeCChHhHHHHHHh-CCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQ---RYFSRYGEVIDCVVMKNNETG---RSRGFGFVTFADPNNVGVVIQN-CPHTLDGR 269 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~---~~F~~~G~I~~v~i~~dk~tg---~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr 269 (388)
....++|||+|||+++++++|+ ++|++||+|.+|+|++++.++ +++|||||+|.++++|++||+. ++..|.++
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456899999999999999999 999999999999999998754 5669999999999999999998 99999999
Q ss_pred CCCCCCCCCCC
Q psy10362 270 TIDPKPCNPRT 280 (388)
Q Consensus 270 ~i~v~~a~~~~ 280 (388)
+|+|.++.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998765
No 113
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.1e-17 Score=130.29 Aligned_cols=80 Identities=10% Similarity=0.065 Sum_probs=73.8
Q ss_pred CCCCCCCcccCCCcCcHHHHH----HHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQ----RYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTID 272 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~ 272 (388)
.+.++|||+|||+++++++|+ ++|++||+|.+|+|+.|+.+ |+||||+|.+.++|++||+. ++..|.|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 445789999999999999999 99999999999999999766 88999999999999999996 89999999999
Q ss_pred CCCCCCCC
Q psy10362 273 PKPCNPRT 280 (388)
Q Consensus 273 v~~a~~~~ 280 (388)
|.++.+..
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99987654
No 114
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=128.43 Aligned_cols=85 Identities=18% Similarity=0.269 Sum_probs=76.1
Q ss_pred CCCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCC
Q psy10362 195 PSGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDP 273 (388)
Q Consensus 195 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v 273 (388)
....+.++|||+|||+++++++|+++|+.| .+|+++.++.+++++|||||+|.++++|++||+. ++..|.+++|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 334567999999999999999999999977 4788999999999999999999999999999996 899999999999
Q ss_pred CCCCCCCCC
Q psy10362 274 KPCNPRTLQ 282 (388)
Q Consensus 274 ~~a~~~~~~ 282 (388)
.++.++...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2fc8_A 87 DWAKPKGEG 95 (102)
T ss_dssp EECCCCCSS
T ss_pred EEecCCCCC
Confidence 999876543
No 115
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.66 E-value=2.9e-17 Score=140.73 Aligned_cols=81 Identities=15% Similarity=0.179 Sum_probs=74.5
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCc---eeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGE---VIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDP 273 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~---I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v 273 (388)
..+.++|||+|||+++||+||+++|++||. |.+|+|++|+. +++||||||+|.++++|++||+.++..|.+|.|+|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEE
Confidence 355688999999999999999999999999 89999999987 99999999999999999999998888999999998
Q ss_pred CCCCC
Q psy10362 274 KPCNP 278 (388)
Q Consensus 274 ~~a~~ 278 (388)
.++..
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 87654
No 116
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.66 E-value=5.1e-17 Score=132.96 Aligned_cols=82 Identities=12% Similarity=0.105 Sum_probs=75.6
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCc---eeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGE---VIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDP 273 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~---I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v 273 (388)
..+.++|||+|||+++|+++|+++|+.||. |.+|+|++|+. ++++|||||+|.+.++|++||+.++..|.+|.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 356788999999999999999999999988 89999999987 99999999999999999999998888999999999
Q ss_pred CCCCCC
Q psy10362 274 KPCNPR 279 (388)
Q Consensus 274 ~~a~~~ 279 (388)
.++..+
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 887653
No 117
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.66 E-value=3.9e-17 Score=127.97 Aligned_cols=81 Identities=16% Similarity=0.250 Sum_probs=75.1
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCC-ceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGR-SRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~-skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
..++|||+|||+++++++|+++|++||.|.+|+|+.++.++. ++|||||+|.+.++|++||+. ++..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 458899999999999999999999999999999999987766 999999999999999999997 999999999999987
Q ss_pred CCC
Q psy10362 277 NPR 279 (388)
Q Consensus 277 ~~~ 279 (388)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 553
No 118
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=7.4e-18 Score=142.02 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=72.8
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCce----eEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEV----IDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDP 273 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I----~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v 273 (388)
.+.++|||+|||+++||+||+++|++||+| .+|+|++| .++++||||||+|.++++|++||+.+++.|.+|.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 556899999999999999999999999975 68999998 4899999999999999999999998888999999988
Q ss_pred CCCCC
Q psy10362 274 KPCNP 278 (388)
Q Consensus 274 ~~a~~ 278 (388)
..+..
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 77643
No 119
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.65 E-value=8.7e-17 Score=134.57 Aligned_cols=82 Identities=22% Similarity=0.372 Sum_probs=76.3
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNP 278 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~~ 278 (388)
+.++|||+|||+++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||+.++..|.++.|+|.++..
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 35899999999999999999999999999999999999999999999999999999999995488999999999998865
Q ss_pred CC
Q psy10362 279 RT 280 (388)
Q Consensus 279 ~~ 280 (388)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 120
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2e-16 Score=129.25 Aligned_cols=81 Identities=7% Similarity=0.072 Sum_probs=70.9
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh---CCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN---CPHTLDGRTIDP 273 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~---~~~~l~Gr~i~v 273 (388)
.++.++|||+|||++++|++|+++|++||.|.+|+|+++ ||||||+|.+.++|++||+. +...|.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 355689999999999999999999999999999999864 57999999999999999985 345699999999
Q ss_pred CCCCCCCCCC
Q psy10362 274 KPCNPRTLQK 283 (388)
Q Consensus 274 ~~a~~~~~~~ 283 (388)
.++..+....
T Consensus 86 ~~a~~~~~~~ 95 (104)
T 1wex_A 86 NYSTSKRITR 95 (104)
T ss_dssp EECSSSSCCC
T ss_pred EEccCccccC
Confidence 9998765443
No 121
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.65 E-value=8.4e-17 Score=149.60 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=75.3
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccC--ceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYG--EVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
..++|||+||++++||++|+++|++|| .|++|+|++|+.|+++||||||+|.+.++|++||+. ++..|.+++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999996 88999999999998
Q ss_pred CCCC
Q psy10362 276 CNPR 279 (388)
Q Consensus 276 a~~~ 279 (388)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8643
No 122
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.65 E-value=2.1e-17 Score=133.66 Aligned_cols=81 Identities=20% Similarity=0.386 Sum_probs=75.1
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~ 277 (388)
.+.++|||+|||+++++++|+++|++||.|.+|+|+.|+ +++++|||||+|.+.++|++||+ +++.|+|++|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 456899999999999999999999999999999999998 99999999999999999999999 8889999999988876
Q ss_pred CCC
Q psy10362 278 PRT 280 (388)
Q Consensus 278 ~~~ 280 (388)
...
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 543
No 123
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=2.2e-17 Score=133.19 Aligned_cols=82 Identities=15% Similarity=0.113 Sum_probs=75.4
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~ 277 (388)
.+.++|||+|||+++++++|+++|++||.|.+ .++.++.+++++|||||+|.+.++|++||+.++..|.++.|+|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 45689999999999999999999999999988 77788888999999999999999999999988899999999999987
Q ss_pred CCC
Q psy10362 278 PRT 280 (388)
Q Consensus 278 ~~~ 280 (388)
.+.
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 124
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4.4e-16 Score=124.73 Aligned_cols=77 Identities=12% Similarity=0.134 Sum_probs=70.3
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCC--CCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLD--GRTIDPK 274 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~--Gr~i~v~ 274 (388)
++.++|||+|||+++++++|+++|++||.|++|+|..+ ++||||+|.+.++|++||+. ++..|. +++|+|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 45689999999999999999999999999999999764 57999999999999999996 889999 9999999
Q ss_pred CCCCCC
Q psy10362 275 PCNPRT 280 (388)
Q Consensus 275 ~a~~~~ 280 (388)
++.++.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 987653
No 125
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.2e-16 Score=128.45 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=71.8
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh---CCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN---CPHTLDGRTIDP 273 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~---~~~~l~Gr~i~v 273 (388)
.++.++|||+|||++++|++|+++|++||.|.+|+|+++ ||||||+|.+.++|++||+. +...|.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 356689999999999999999999999999999998875 57999999999999999984 467899999999
Q ss_pred CCCCCCCCCC
Q psy10362 274 KPCNPRTLQK 283 (388)
Q Consensus 274 ~~a~~~~~~~ 283 (388)
.++..+....
T Consensus 86 ~~a~~~~~~~ 95 (101)
T 2cq1_A 86 QYSNHKELKT 95 (101)
T ss_dssp EECSCSSCCC
T ss_pred EEcCcccCcC
Confidence 9998765443
No 126
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.64 E-value=1.3e-16 Score=138.91 Aligned_cols=83 Identities=27% Similarity=0.378 Sum_probs=78.1
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
...++|||+|||+++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||+. ++..|.+++|+|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4568999999999999999999999999999999999999999999999999999999999987 889999999999998
Q ss_pred CCCC
Q psy10362 277 NPRT 280 (388)
Q Consensus 277 ~~~~ 280 (388)
.+..
T Consensus 148 ~~~~ 151 (158)
T 2kn4_A 148 RYGR 151 (158)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 127
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=2e-16 Score=122.59 Aligned_cols=72 Identities=19% Similarity=0.332 Sum_probs=66.5
Q ss_pred CCCCcccCCCcC------cHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCC-CCC
Q psy10362 201 GKPPADYSAYGT------YAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGR-TID 272 (388)
Q Consensus 201 ~~vfVgnLp~~~------te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr-~i~ 272 (388)
++|||+|||+++ ++++|+++|++||+|.+|+|. +.+++++|||||+|.+.++|++||+. ++..|.|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 779999999999999999987 46899999999999999999999997 88999999 888
Q ss_pred CC
Q psy10362 273 PK 274 (388)
Q Consensus 273 v~ 274 (388)
|.
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 73
No 128
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.5e-16 Score=128.28 Aligned_cols=82 Identities=20% Similarity=0.320 Sum_probs=72.9
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPK 274 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~ 274 (388)
...+.++|||+|||+++++++|+++|++||.| +|+.+ .+++++|||||+|.++++|++||+. ++..|.++.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34567999999999999999999999999976 56666 6899999999999999999999996 8899999999999
Q ss_pred CCCCCCC
Q psy10362 275 PCNPRTL 281 (388)
Q Consensus 275 ~a~~~~~ 281 (388)
++.++..
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9877643
No 129
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-16 Score=131.48 Aligned_cols=83 Identities=19% Similarity=0.407 Sum_probs=75.6
Q ss_pred CCCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCC
Q psy10362 195 PSGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDP 273 (388)
Q Consensus 195 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v 273 (388)
....+.++|||+|||+++++++|+++|++||+|.+|+|++|+ +.++|||||+|.+.++|++||+. ++..|.|++|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 444667899999999999999999999999999999999985 35899999999999999999997 899999999999
Q ss_pred CCCCCC
Q psy10362 274 KPCNPR 279 (388)
Q Consensus 274 ~~a~~~ 279 (388)
+++..+
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 998764
No 130
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3.5e-16 Score=128.10 Aligned_cols=77 Identities=17% Similarity=0.147 Sum_probs=70.5
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCC-----CCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDG-----RTI 271 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~G-----r~i 271 (388)
...++|||+|||+++++++|+++|++||+|++|+|+.| |||||+|.+.++|++||+. ++.+|.+ +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45689999999999999999999999999999999887 7999999999999999997 8888999 999
Q ss_pred CCCCCCCCCC
Q psy10362 272 DPKPCNPRTL 281 (388)
Q Consensus 272 ~v~~a~~~~~ 281 (388)
+|+++.++..
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 9999877553
No 131
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=5.3e-16 Score=122.52 Aligned_cols=78 Identities=21% Similarity=0.352 Sum_probs=70.7
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
.++.++|||+|||+++++++|+++|++||+|.+|+|+ |+||||+|.+.++|++||+. ++..|.+++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3566899999999999999999999999999999997 46999999999999999986 88999999999999
Q ss_pred CCCCCCC
Q psy10362 276 CNPRTLQ 282 (388)
Q Consensus 276 a~~~~~~ 282 (388)
+......
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9776543
No 132
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.63 E-value=2e-16 Score=124.72 Aligned_cols=70 Identities=7% Similarity=-0.009 Sum_probs=65.8
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
.-|||+||++.+||++|+++|.+||+|.+++|+. +||||||+|.++++|++||+. |+.+|.+|+|+|+.+
T Consensus 8 ~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 8 SWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 5599999999999999999999999999999976 579999999999999999998 889999999999886
No 133
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.5e-16 Score=130.23 Aligned_cols=81 Identities=12% Similarity=0.157 Sum_probs=72.0
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-C--CCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-C--PHTLDGRTIDP 273 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~--~~~l~Gr~i~v 273 (388)
.++.++|||+|||++++|++|+++|++||.|++|+|+++ ||||||+|++.++|++||+. + +..|.|++|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 355688999999999999999999999999999999976 58999999999999999986 3 46899999999
Q ss_pred CCCCCCCCCC
Q psy10362 274 KPCNPRTLQK 283 (388)
Q Consensus 274 ~~a~~~~~~~ 283 (388)
.++..+....
T Consensus 102 ~~a~~k~~~~ 111 (119)
T 2ad9_A 102 QFSNHKELKT 111 (119)
T ss_dssp EECSSSSCCC
T ss_pred EEccCCCCCc
Confidence 9998766543
No 134
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.62 E-value=2.8e-16 Score=128.09 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=72.9
Q ss_pred CCCCCCCcccCCCcC------cHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCC-
Q psy10362 198 PSAGKPPADYSAYGT------YAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGR- 269 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~------te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr- 269 (388)
...++|||+|||+.+ ++++|+++|++||.|.+|+|+ +.+++++|||||+|.+.++|++||+. ++..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 446889999999999 789999999999999999988 46899999999999999999999997 88999999
Q ss_pred CCCCCCCCCC
Q psy10362 270 TIDPKPCNPR 279 (388)
Q Consensus 270 ~i~v~~a~~~ 279 (388)
+|+|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999988643
No 135
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=5.4e-16 Score=124.66 Aligned_cols=78 Identities=13% Similarity=0.227 Sum_probs=71.2
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
.++.++|||+|||+++++++|+++|++||+|.+|+|.++ |+||||+|.+.++|++||+. ++..|.+++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 356689999999999999999999999999999999865 57999999999999999987 89999999999999
Q ss_pred CCCCC
Q psy10362 276 CNPRT 280 (388)
Q Consensus 276 a~~~~ 280 (388)
+....
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 87654
No 136
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=3.3e-17 Score=135.74 Aligned_cols=84 Identities=18% Similarity=0.206 Sum_probs=78.4
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeE--------EEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVID--------CVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDG 268 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~G 268 (388)
.+.++|||+|||+++++++|+++|++||.|.+ |+|+.|+.+++++|||||+|.+.++|++||+. ++..|.+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 55689999999999999999999999999998 99999999999999999999999999999996 8899999
Q ss_pred CCCCCCCCCCCCC
Q psy10362 269 RTIDPKPCNPRTL 281 (388)
Q Consensus 269 r~i~v~~a~~~~~ 281 (388)
++|+|.++..+..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999877653
No 137
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=8.1e-16 Score=123.25 Aligned_cols=78 Identities=13% Similarity=0.089 Sum_probs=69.9
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
.+..++|||+|||+++++++|+++|++||.|. ++++.+ +++|||||+|.+.++|++||+. ++..|.+++|+|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35568999999999999999999999999997 677654 5788999999999999999987 99999999999999
Q ss_pred CCCC
Q psy10362 276 CNPR 279 (388)
Q Consensus 276 a~~~ 279 (388)
+.++
T Consensus 91 a~~~ 94 (97)
T 2e5j_A 91 ARQQ 94 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
No 138
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=5.8e-16 Score=124.84 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=69.2
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
+..++|||+|||+++++++|+++|++||.|.+|+|.+ ++|||||+|.+.++|++||+. ++..|.+++|+|.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 4568999999999999999999999999999999983 568999999999999999987 999999999999998
Q ss_pred CC
Q psy10362 277 NP 278 (388)
Q Consensus 277 ~~ 278 (388)
++
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 139
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.61 E-value=4.1e-16 Score=137.37 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=77.4
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
.+.++|||+|||+++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++||+. ++..|.++.|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999996 889999999999998
Q ss_pred CCCCC
Q psy10362 277 NPRTL 281 (388)
Q Consensus 277 ~~~~~ 281 (388)
.....
T Consensus 150 ~~~~~ 154 (165)
T 1rk8_A 150 FVKGP 154 (165)
T ss_dssp EECC-
T ss_pred cCCCC
Confidence 76543
No 140
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2e-16 Score=130.48 Aligned_cols=85 Identities=15% Similarity=0.085 Sum_probs=73.3
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
++.++|||+|||+++++++|+++|++||.|.+|.+..+..+++++|||||+|.+.++|++||+. ++..|.++.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 4568999999999999999999999999995543333334788999999999999999999997 889999999999999
Q ss_pred CCCCCC
Q psy10362 277 NPRTLQ 282 (388)
Q Consensus 277 ~~~~~~ 282 (388)
......
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 876543
No 141
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.60 E-value=1.1e-15 Score=132.32 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=83.3
Q ss_pred CCceeEEEEEeCChHhHHHHHHh--CCCCCCCCCCCCCCCCCCCC-----------CCCCCCCCCCeEEEcCCCCCCCHH
Q psy10362 239 GRSRGFGFVTFADPNNVGVVIQN--CPHTLDGRTIDPKPCNPRTL-----------QKPKKNSSFPKVFLGGLPSNVTET 305 (388)
Q Consensus 239 g~skG~gFV~F~~~~~A~~Ai~~--~~~~l~Gr~i~v~~a~~~~~-----------~~~~~~~~~~~lfV~nLp~~vtee 305 (388)
.+.+|+++|+|.+.++|++||+. ++..+.| .|.+.++..... .........++|||+|||.++|++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 35789999999999999999974 5678899 888887765321 122334556899999999999999
Q ss_pred HHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHH
Q psy10362 306 DLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQK 344 (388)
Q Consensus 306 ~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~ 344 (388)
+|+++|++||.|++|+|+++ +++||||+|.+..+++
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~ 124 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAA 124 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHH
T ss_pred HHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHH
Confidence 99999999999999999986 7899999996554333
No 142
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=121.17 Aligned_cols=79 Identities=15% Similarity=0.116 Sum_probs=71.1
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEE-EEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDC-VVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v-~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
...++|||+|||+++++++|+++|++||.|.+| .|+.++.+++ |||+|.+.++|++||+. ++..|.+++|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456899999999999999999999999999999 5888876543 99999999999999996 99999999999999
Q ss_pred CCCCC
Q psy10362 276 CNPRT 280 (388)
Q Consensus 276 a~~~~ 280 (388)
+.++.
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 87763
No 143
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.3e-15 Score=119.91 Aligned_cols=79 Identities=18% Similarity=0.332 Sum_probs=70.3
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~ 277 (388)
...++|||+|||+++++++|+++|++||.|.+| +.++.+++ ||||+|.+.++|++||+.+++.|.|+.|.|+++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 345799999999999999999999999999987 66666766 9999999999999999988899999999999887
Q ss_pred CCCC
Q psy10362 278 PRTL 281 (388)
Q Consensus 278 ~~~~ 281 (388)
.+..
T Consensus 81 ~~~~ 84 (94)
T 2e5g_A 81 QKEF 84 (94)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 5543
No 144
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.3e-15 Score=118.61 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=68.5
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh--CCCCCCCCCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN--CPHTLDGRTIDP 273 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~--~~~~l~Gr~i~v 273 (388)
...+.++|||+|||+++++++|+++|++||.|.+|+|+++ |+||||+|.+.++|++||+. ++..+.+++|+|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3456789999999999999999999999999999999874 57999999999999999995 678899999999
Q ss_pred CCCC
Q psy10362 274 KPCN 277 (388)
Q Consensus 274 ~~a~ 277 (388)
++++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 8763
No 145
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=1e-15 Score=129.60 Aligned_cols=80 Identities=13% Similarity=0.117 Sum_probs=71.4
Q ss_pred CCCCCCCcccCCCcCcHHHHH----HHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQ----RYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTID 272 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~ 272 (388)
++.++|||+||++.+++++|+ ++|++||+|.+|.+.+ ++++||||||+|.+.++|++||+. ++..|.|++|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 456889999999999999876 6999999999988753 678999999999999999999987 88999999999
Q ss_pred CCCCCCCC
Q psy10362 273 PKPCNPRT 280 (388)
Q Consensus 273 v~~a~~~~ 280 (388)
|.++..+.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99987654
No 146
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-15 Score=124.99 Aligned_cols=80 Identities=19% Similarity=0.287 Sum_probs=72.8
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
....++|||+|||+++++++|+++|++||.|.+|+|+++ ++||||+|.+.++|++||+. ++..|.+++|+|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 355689999999999999999999999999999999886 57999999999999999987 88999999999999
Q ss_pred CCCCCCC
Q psy10362 276 CNPRTLQ 282 (388)
Q Consensus 276 a~~~~~~ 282 (388)
+......
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 9876543
No 147
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=6.9e-16 Score=125.69 Aligned_cols=77 Identities=6% Similarity=0.091 Sum_probs=68.4
Q ss_pred CCCCCCCcccCCC-cCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-C--CCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAY-GTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-C--PHTLDGRTIDP 273 (388)
Q Consensus 198 ~~~~~vfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~--~~~l~Gr~i~v 273 (388)
++.++|||+|||+ +++|+||+++|++||.|.+|+|++++ +||||+|.++++|++||+. + ...|.|++|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4568999999999 99999999999999999999998764 6999999999999999986 3 35699999999
Q ss_pred CCCCCCC
Q psy10362 274 KPCNPRT 280 (388)
Q Consensus 274 ~~a~~~~ 280 (388)
.++....
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9987543
No 148
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.3e-15 Score=124.55 Aligned_cols=78 Identities=8% Similarity=0.117 Sum_probs=69.1
Q ss_pred CCCCCCCCcccCCCc-CcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh---CCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYG-TYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN---CPHTLDGRTID 272 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~---~~~~l~Gr~i~ 272 (388)
.++.++|||+|||++ ++|++|+++|++||.|.+|+|++ +||||||+|.+.++|++||+. +...|.||+|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 455789999999998 99999999999999999999975 368999999999999999985 35679999999
Q ss_pred CCCCCCCC
Q psy10362 273 PKPCNPRT 280 (388)
Q Consensus 273 v~~a~~~~ 280 (388)
|.++....
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99987554
No 149
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.6e-15 Score=119.69 Aligned_cols=76 Identities=20% Similarity=0.302 Sum_probs=70.0
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
..+.++|||+|||+++++++|+++|++||.|.+|+|+++ ||||+|.+.++|++||+. ++..|.+++|+|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356789999999999999999999999999999999854 999999999999999997 89999999999999
Q ss_pred CCCCC
Q psy10362 276 CNPRT 280 (388)
Q Consensus 276 a~~~~ 280 (388)
+....
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87654
No 150
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.58 E-value=1e-15 Score=136.82 Aligned_cols=82 Identities=21% Similarity=0.279 Sum_probs=76.5
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
...++|||+|||+++++++|+++|++||+|++|+|+.|+ +++++|||||+|.+.++|++||+. ++..|.++.|+|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999998 999999999999999999999996 889999999999988
Q ss_pred CCCC
Q psy10362 277 NPRT 280 (388)
Q Consensus 277 ~~~~ 280 (388)
....
T Consensus 165 ~~~~ 168 (177)
T 2f3j_A 165 ASQI 168 (177)
T ss_dssp SSGG
T ss_pred cCCC
Confidence 6643
No 151
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.4e-15 Score=120.62 Aligned_cols=78 Identities=19% Similarity=0.330 Sum_probs=70.9
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
..+.++|||+|||+++++++|+++|++||.|.+|+|+++ ||||+|.+.++|++||+. ++..|.+++|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 456689999999999999999999999999999999854 999999999999999987 89999999999999
Q ss_pred CCCCCCC
Q psy10362 276 CNPRTLQ 282 (388)
Q Consensus 276 a~~~~~~ 282 (388)
+..+...
T Consensus 79 a~~~~~~ 85 (92)
T 2dgt_A 79 STSRLRT 85 (92)
T ss_dssp SSCCCSC
T ss_pred ccCCCCC
Confidence 9776543
No 152
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.58 E-value=2.3e-15 Score=121.97 Aligned_cols=77 Identities=14% Similarity=0.250 Sum_probs=70.0
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
.+.++|||+|||+++++++|+++|++||.|.+|+|++ +||||+|.+.++|++||+. ++..|.++.|+|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4568999999999999999999999999999999874 3999999999999999997 899999999999998
Q ss_pred CCCCCC
Q psy10362 277 NPRTLQ 282 (388)
Q Consensus 277 ~~~~~~ 282 (388)
......
T Consensus 81 ~~~~~~ 86 (103)
T 2dgu_A 81 KPPDQK 86 (103)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 776543
No 153
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.58 E-value=2e-15 Score=125.14 Aligned_cols=74 Identities=12% Similarity=0.078 Sum_probs=65.1
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
...++|||+|||+++++++|+++|++||+|++|+|+.| |||||+|.+.++|++||+. ++.+|.+++|+|.++
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45689999999999999999999999999999999876 7999999999999999996 999999999666554
Q ss_pred CC
Q psy10362 277 NP 278 (388)
Q Consensus 277 ~~ 278 (388)
..
T Consensus 87 ~v 88 (115)
T 3beg_B 87 RV 88 (115)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 154
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-15 Score=121.21 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=68.2
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCc-eeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CC-CCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGE-VIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CP-HTLDGRTIDPK 274 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~-I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~-~~l~Gr~i~v~ 274 (388)
++.++|||+|||+++++++|+++|++||. |..+.+. +++||||+|.+.++|++||+. ++ ..|.+++|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45689999999999999999999999999 6655552 468999999999999999996 88 89999999999
Q ss_pred CCCCCCCC
Q psy10362 275 PCNPRTLQ 282 (388)
Q Consensus 275 ~a~~~~~~ 282 (388)
++.++...
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 99876543
No 155
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.57 E-value=1.9e-15 Score=134.93 Aligned_cols=85 Identities=24% Similarity=0.379 Sum_probs=76.1
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~ 277 (388)
...++|||+|||+++++++|+++|+.||.|.+|+|+.|+.+++++|||||+|.+.++|++||+.+++.|.|+.|.|+++.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecC
Confidence 34588999999999999999999999999999999999999999999999999999999999988899999999999988
Q ss_pred CCCCC
Q psy10362 278 PRTLQ 282 (388)
Q Consensus 278 ~~~~~ 282 (388)
++...
T Consensus 182 ~k~~~ 186 (196)
T 1l3k_A 182 SKQEM 186 (196)
T ss_dssp -----
T ss_pred ChhHh
Confidence 76543
No 156
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.56 E-value=1.8e-15 Score=122.68 Aligned_cols=77 Identities=13% Similarity=0.118 Sum_probs=68.1
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCC--CCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPH--TLDGRTIDPK 274 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~--~l~Gr~i~v~ 274 (388)
+++++|||+|||+++||++|+++|++||.|++|+|+++ ||||||+|.+.++|++||+. ++. .|.||+|+|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 45689999999999999999999999999999999864 57999999999999999986 444 4789999999
Q ss_pred CCCCCC
Q psy10362 275 PCNPRT 280 (388)
Q Consensus 275 ~a~~~~ 280 (388)
+++.+.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 987654
No 157
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.56 E-value=3.8e-15 Score=122.05 Aligned_cols=75 Identities=19% Similarity=0.346 Sum_probs=68.3
Q ss_pred CCCCCCCcccCCCc-CcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYG-TYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 198 ~~~~~vfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
...++|||+|||++ +++++|+++|++||+|.+|+| +++||||+|.+.++|++||+. ++..|.++.|+|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34589999999999 999999999999999999998 467999999999999999976 89999999999999
Q ss_pred CCCCC
Q psy10362 276 CNPRT 280 (388)
Q Consensus 276 a~~~~ 280 (388)
+....
T Consensus 97 a~~~~ 101 (110)
T 1wf1_A 97 AGEPK 101 (110)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87543
No 158
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.56 E-value=6.8e-16 Score=123.27 Aligned_cols=81 Identities=14% Similarity=0.205 Sum_probs=72.9
Q ss_pred CCCCCCCCcccCCCcCcHHHHH----HHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQ----RYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTI 271 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i 271 (388)
.++.++|||+|||+++++++|+ ++|++||.|.+|+|.+ +++++|||||+|.+.++|++||+. ++..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999999874 567889999999999999999997 8999999999
Q ss_pred CCCCCCCCC
Q psy10362 272 DPKPCNPRT 280 (388)
Q Consensus 272 ~v~~a~~~~ 280 (388)
+|.++....
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999987653
No 159
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.3e-15 Score=125.99 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=66.8
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCC---CCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNET---GRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPK 274 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~t---g~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~ 274 (388)
.+.++|||+|||+++++++|+++|++||+|. +.++.++.+ +++||||||+|.++++|++||+.. +.++|+.|.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~ 83 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCV 83 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEec
Confidence 4568999999999999999999999999999 888888877 799999999999999999999974 34677776655
Q ss_pred C
Q psy10362 275 P 275 (388)
Q Consensus 275 ~ 275 (388)
.
T Consensus 84 ~ 84 (114)
T 2dnl_A 84 S 84 (114)
T ss_dssp C
T ss_pred c
Confidence 4
No 160
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.55 E-value=6.7e-16 Score=127.69 Aligned_cols=77 Identities=12% Similarity=0.013 Sum_probs=69.0
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccC-ceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYG-EVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
..++|||+|||+++++++|+++|++|| +|..++|+.+ +++|||||+|.+.++|++||+. ++.+|.|++|+|+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 457899999999999999999999999 8999998643 4789999999999999999987 889999999999887
Q ss_pred CCC
Q psy10362 277 NPR 279 (388)
Q Consensus 277 ~~~ 279 (388)
...
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 643
No 161
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.55 E-value=2.5e-15 Score=123.29 Aligned_cols=78 Identities=12% Similarity=0.213 Sum_probs=70.2
Q ss_pred CCCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCC
Q psy10362 195 PSGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDP 273 (388)
Q Consensus 195 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v 273 (388)
....+.++|||+|||+++++++|+++|++||.|.+|+|+ +|||||+|.+.++|++||+. ++..|.|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 334667899999999999999999999999999999998 57999999999999999997 999999999999
Q ss_pred CCCCCCC
Q psy10362 274 KPCNPRT 280 (388)
Q Consensus 274 ~~a~~~~ 280 (388)
.++....
T Consensus 98 ~~a~~~~ 104 (108)
T 2jvo_A 98 VYSKLPA 104 (108)
T ss_dssp ESCSCCC
T ss_pred EEecCCC
Confidence 9987654
No 162
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.55 E-value=4.6e-15 Score=128.32 Aligned_cols=78 Identities=24% Similarity=0.316 Sum_probs=71.9
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
....++|||+|||+++++++|+++|++||.|.+|+|++| ++|||||+|.+.++|++||+. ++..|.+++|+|.+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 355689999999999999999999999999999999886 578999999999999999996 89999999999998
Q ss_pred CCCC
Q psy10362 276 CNPR 279 (388)
Q Consensus 276 a~~~ 279 (388)
+.++
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8654
No 163
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.55 E-value=7.5e-15 Score=133.03 Aligned_cols=84 Identities=11% Similarity=0.256 Sum_probs=78.5
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
...++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|.+||+. ++..|.++.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 3457899999999999999999999999999999999999999999999999999999999997 999999999999998
Q ss_pred CCCCC
Q psy10362 277 NPRTL 281 (388)
Q Consensus 277 ~~~~~ 281 (388)
.....
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 77643
No 164
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.5e-15 Score=120.20 Aligned_cols=77 Identities=18% Similarity=0.282 Sum_probs=68.7
Q ss_pred CCCCCCCCcccCCC-cCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAY-GTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPK 274 (388)
Q Consensus 197 ~~~~~~vfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~ 274 (388)
.++.++|||+|||+ ++++++|+++|++||.|.+|+|. +|||||+|.+.++|++||+. ++..+.+++|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 35678999999998 99999999999999999999984 57999999999999999997 8999999999999
Q ss_pred CCCCCCC
Q psy10362 275 PCNPRTL 281 (388)
Q Consensus 275 ~a~~~~~ 281 (388)
++.....
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9866543
No 165
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.55 E-value=3.9e-15 Score=119.66 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=68.5
Q ss_pred CCCCCCCCCcccCCC-cCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCC
Q psy10362 196 SGPSAGKPPADYSAY-GTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDP 273 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v 273 (388)
..++.++|||+|||+ ++++++|+++|++||.|.+|+|. +|||||+|.+.++|++||+. ++..+.|++|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 346679999999998 99999999999999999999983 67999999999999999996 889999999999
Q ss_pred CCCCCC
Q psy10362 274 KPCNPR 279 (388)
Q Consensus 274 ~~a~~~ 279 (388)
.++...
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 987653
No 166
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.54 E-value=4.6e-15 Score=130.54 Aligned_cols=80 Identities=14% Similarity=0.180 Sum_probs=70.5
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCC--CCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDG--RTIDPK 274 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~G--r~i~v~ 274 (388)
....+|||+||++.+|+++|+++|++||+|++|+|+.++ +++||||+|.+.++|++|++. ++..|.+ ++|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 344678999999999999999999999999999997542 578999999999999999997 8899966 999999
Q ss_pred CCCCCCC
Q psy10362 275 PCNPRTL 281 (388)
Q Consensus 275 ~a~~~~~ 281 (388)
+++.+..
T Consensus 120 ~Ak~~~l 126 (164)
T 1sjr_A 120 FSKLTSL 126 (164)
T ss_dssp ECSSSSC
T ss_pred EecCCcc
Confidence 9887653
No 167
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.9e-15 Score=127.07 Aligned_cols=76 Identities=11% Similarity=0.111 Sum_probs=68.1
Q ss_pred CCCCcccC----CCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCC----hHh----HHHHHH--h-CCCC
Q psy10362 201 GKPPADYS----AYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFAD----PNN----VGVVIQ--N-CPHT 265 (388)
Q Consensus 201 ~~vfVgnL----p~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~----~~~----A~~Ai~--~-~~~~ 265 (388)
.+|||+|| |+.++|++|+++|++||+|.+|+++.|+.|++++|||||+|.| +++ |.+||. . ++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999996 433 788888 4 7889
Q ss_pred CCCCCCCCCCC
Q psy10362 266 LDGRTIDPKPC 276 (388)
Q Consensus 266 l~Gr~i~v~~a 276 (388)
|.||+|+|...
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999998864
No 168
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.54 E-value=1.7e-15 Score=131.80 Aligned_cols=80 Identities=34% Similarity=0.529 Sum_probs=76.0
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPR 279 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~~~ 279 (388)
.++|||+|||+++++++|+++|++||.|.+|+|+.|+.+++++|||||+|.+.++|++||+.++..|.|++|.|.++.++
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCCC
Confidence 56899999999999999999999999999999999999999999999999999999999998888999999999998764
No 169
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-14 Score=117.05 Aligned_cols=77 Identities=18% Similarity=0.234 Sum_probs=69.4
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhcc--CceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRY--GEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDP 273 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~--G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v 273 (388)
..+.++|||+|||+++++++|+++|++| |.|.+|++. ++||||+|.+.++|++||+. ++..|.+++|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3556899999999999999999999999 999998875 45999999999999999996 899999999999
Q ss_pred CCCCCCCC
Q psy10362 274 KPCNPRTL 281 (388)
Q Consensus 274 ~~a~~~~~ 281 (388)
.++.+...
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99987653
No 170
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.54 E-value=7.2e-15 Score=127.16 Aligned_cols=81 Identities=19% Similarity=0.266 Sum_probs=76.1
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
..+.++|||+|||+++++++|+++|++||.|.+++|+.|+.+++++|||||+|.+.++|++||+. ++..+.|++|+|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999996 89999999999988
Q ss_pred CC
Q psy10362 276 CN 277 (388)
Q Consensus 276 a~ 277 (388)
+.
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 75
No 171
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.54 E-value=8.2e-15 Score=128.04 Aligned_cols=79 Identities=18% Similarity=0.232 Sum_probs=74.9
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
...++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++. ++..|.|++|.|+++
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 3468999999999999999999999999999999999998999999999999999999999997 999999999999876
No 172
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-14 Score=116.49 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=68.3
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
.+.++|||+|| ++++++|+++|++||+|.+|+|. +++|||||+|.+.++|++||+. ++..|.+++|+|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45689999996 99999999999999999999984 4678999999999999999987 889999999999998
Q ss_pred CCCCC
Q psy10362 277 NPRTL 281 (388)
Q Consensus 277 ~~~~~ 281 (388)
.....
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 77654
No 173
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=1.3e-15 Score=121.58 Aligned_cols=79 Identities=14% Similarity=0.213 Sum_probs=70.4
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKP 275 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~ 275 (388)
..+.++|||+|||+++++++|+++|++||.|..+ +.+++++|||||+|.+.++|++||+. ++..|.|++|+|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3556899999999999999999999999988665 35788999999999999999999996 88899999999999
Q ss_pred CCCCC
Q psy10362 276 CNPRT 280 (388)
Q Consensus 276 a~~~~ 280 (388)
+.++.
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 87654
No 174
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.3e-15 Score=119.84 Aligned_cols=79 Identities=22% Similarity=0.342 Sum_probs=67.6
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~ 277 (388)
.+.++|||+|||+++++++|+++|++||+|.+|+|+++ +||||||+|.++++|++|+.. ...+.+++|+|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 34689999999999999999999999999999999875 789999999999999876543 455689999999887
Q ss_pred CCCCC
Q psy10362 278 PRTLQ 282 (388)
Q Consensus 278 ~~~~~ 282 (388)
++...
T Consensus 77 ~~~~~ 81 (88)
T 1wf0_A 77 PKHNS 81 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 175
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.52 E-value=1.7e-15 Score=120.01 Aligned_cols=78 Identities=26% Similarity=0.372 Sum_probs=62.4
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPC 276 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a 276 (388)
.+...+|||+|||+++||++|+++|++||.|.+|+|+++ +||||||+|.++++|+++.. ....+.+++|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEEEc
Confidence 355689999999999999999999999999999999875 78999999999999985332 234466888988888
Q ss_pred CCCC
Q psy10362 277 NPRT 280 (388)
Q Consensus 277 ~~~~ 280 (388)
.++.
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 7643
No 176
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=5.3e-15 Score=121.87 Aligned_cols=76 Identities=17% Similarity=0.106 Sum_probs=68.7
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCN 277 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~ 277 (388)
+.++|||+|||+++++++|+++|++||.|.+|+|++ +++||||+|.+.++|++||+. ++..|.++.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457899999999999999999999999999998874 467999999999999999997 8999999999999876
Q ss_pred CCC
Q psy10362 278 PRT 280 (388)
Q Consensus 278 ~~~ 280 (388)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 543
No 177
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.51 E-value=2.3e-15 Score=137.62 Aligned_cols=80 Identities=20% Similarity=0.325 Sum_probs=73.5
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCN 277 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~ 277 (388)
..++|||+|||+++++++|+++|++||.|++|+|++|+ +.+||||||+|.+.++|++||+. ++..|.|++|.|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 34689999999999999999999999999999999985 45899999999999999999987 9999999999999987
Q ss_pred CCC
Q psy10362 278 PRT 280 (388)
Q Consensus 278 ~~~ 280 (388)
++.
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 654
No 178
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.51 E-value=1e-14 Score=147.81 Aligned_cols=83 Identities=18% Similarity=0.308 Sum_probs=77.8
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
.+.++|||+|||++||+++|+++|++||.|++|+|+.|+.+++++|||||+|.+.++|++||+. ++..|.++.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4458999999999999999999999999999999999999999999999999999999999987 889999999999998
Q ss_pred CCCC
Q psy10362 277 NPRT 280 (388)
Q Consensus 277 ~~~~ 280 (388)
....
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 7654
No 179
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.51 E-value=1.6e-14 Score=129.14 Aligned_cols=83 Identities=17% Similarity=0.189 Sum_probs=78.2
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
...++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+. ++..|.++.|+|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 5568999999999999999999999999999999999998999999999999999999999997 999999999999998
Q ss_pred CCCC
Q psy10362 277 NPRT 280 (388)
Q Consensus 277 ~~~~ 280 (388)
.+..
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 180
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.50 E-value=5.8e-15 Score=116.17 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=67.8
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCN 277 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~ 277 (388)
..++|||+|||+++++++|+++|++| .|.+|+|. ++||||||+|.++++|++||+. ++..+.+++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45899999999999999999999999 99999884 5789999999999999999996 8999999999999875
Q ss_pred CC
Q psy10362 278 PR 279 (388)
Q Consensus 278 ~~ 279 (388)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 181
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.50 E-value=1.9e-15 Score=129.70 Aligned_cols=84 Identities=13% Similarity=0.180 Sum_probs=71.7
Q ss_pred CCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEE--E---eecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCC
Q psy10362 197 GPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCV--V---MKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRT 270 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~--i---~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~ 270 (388)
..+.++|||+|||+++|+++|+++|++||.|.+|. + ++.+.+++++|||||+|.+.++|++||+. ++..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 34568899999999999999999999999987751 1 11124789999999999999999999996 999999999
Q ss_pred CCCCCCCCCC
Q psy10362 271 IDPKPCNPRT 280 (388)
Q Consensus 271 i~v~~a~~~~ 280 (388)
|.|.++....
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999987643
No 182
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.50 E-value=3.7e-14 Score=123.21 Aligned_cols=79 Identities=15% Similarity=0.277 Sum_probs=72.8
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCC--CCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDG--RTIDPK 274 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~G--r~i~v~ 274 (388)
...++|||+|||+++++++|+++|++||.|.+++|++++.+++++|||||+|.+.++|.+|++. ++..+.+ ++|+|+
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 4568899999999999999999999999999999999998999999999999999999999996 8888988 888776
Q ss_pred CC
Q psy10362 275 PC 276 (388)
Q Consensus 275 ~a 276 (388)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 53
No 183
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=8.1e-15 Score=121.58 Aligned_cols=78 Identities=8% Similarity=0.008 Sum_probs=64.7
Q ss_pred CCCCCCCCc--ccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCC-----CC
Q psy10362 197 GPSAGKPPA--DYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTL-----DG 268 (388)
Q Consensus 197 ~~~~~~vfV--gnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l-----~G 268 (388)
.++.++||| +||+++++|++|+++|++||+|.+|+|+.+ ||||||+|.+.++|++|++. ++.+| .+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345678999 779999999999999999999999988643 68999999999999999997 77666 46
Q ss_pred CCCCCCCCCCCC
Q psy10362 269 RTIDPKPCNPRT 280 (388)
Q Consensus 269 r~i~v~~a~~~~ 280 (388)
++|.|.++....
T Consensus 96 ~~l~v~~a~~~p 107 (114)
T 2cq2_A 96 ITLYLNFVEKVQ 107 (114)
T ss_dssp EECEEEEESCCC
T ss_pred cEEEEEecccCc
Confidence 667776665433
No 184
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.48 E-value=5.1e-14 Score=121.85 Aligned_cols=76 Identities=21% Similarity=0.272 Sum_probs=70.3
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDP 273 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v 273 (388)
...++|||+|||+++++++|+++|++||.|.+++|+.++.+++++|||||+|.+.++|++|++. ++..|.++.+.|
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i 162 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 162 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCC
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccce
Confidence 3457899999999999999999999999999999999998999999999999999999999997 889999987444
No 185
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.48 E-value=1.2e-14 Score=113.48 Aligned_cols=72 Identities=14% Similarity=0.281 Sum_probs=64.8
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhcc----C-------ceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRY----G-------EVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTL 266 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l 266 (388)
.+.++|||+|||+++++++|+++|++| | .|.++++.++ ||||||+|.+.++|++||..++..|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 356899999999999999999999999 8 8999998865 5899999999999999994489999
Q ss_pred CCCCCCCCC
Q psy10362 267 DGRTIDPKP 275 (388)
Q Consensus 267 ~Gr~i~v~~ 275 (388)
.|++|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999998764
No 186
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.47 E-value=2.8e-14 Score=129.09 Aligned_cols=79 Identities=8% Similarity=-0.002 Sum_probs=73.1
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPR 279 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~~~ 279 (388)
.++|||+|||+++++++|+++|++||.|.+|+|.+++ +++++|||||+|.+.++|++||+.++..|.|++|.|.+....
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 4789999999999999999999999999999999986 589999999999999999999998778999999999876543
No 187
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.47 E-value=1.7e-14 Score=122.33 Aligned_cols=78 Identities=14% Similarity=0.220 Sum_probs=69.2
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeE-EEEEeCChHhHHHHHHh-CCCCCCC--CCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGF-GFVTFADPNNVGVVIQN-CPHTLDG--RTIDPK 274 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~-gFV~F~~~~~A~~Ai~~-~~~~l~G--r~i~v~ 274 (388)
...+|||+||++.+|+++|+++|++||+|.+|+|+.+ +++| |||+|.+.++|++||+. ++..|.+ ++|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 4457899999999999999999999999999998864 2577 99999999999999998 8999988 889999
Q ss_pred CCCCCCC
Q psy10362 275 PCNPRTL 281 (388)
Q Consensus 275 ~a~~~~~ 281 (388)
+++....
T Consensus 102 ~ak~~~l 108 (130)
T 3zzy_A 102 FSKLTSL 108 (130)
T ss_dssp ECSCSSC
T ss_pred ecCCCce
Confidence 8877654
No 188
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=8.2e-14 Score=117.32 Aligned_cols=75 Identities=15% Similarity=0.103 Sum_probs=66.1
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeE-EEEEeCChHhHHHHHHh-CCCCCCC--CCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGF-GFVTFADPNNVGVVIQN-CPHTLDG--RTIDPKPC 276 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~-gFV~F~~~~~A~~Ai~~-~~~~l~G--r~i~v~~a 276 (388)
.+|||+||++.+++++|+++|++||.|++|+|+. + +|| |||+|.+.++|++|++. ++..|.+ +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 3468999999999999999999999999999975 2 276 99999999999999997 8999988 58999988
Q ss_pred CCCCC
Q psy10362 277 NPRTL 281 (388)
Q Consensus 277 ~~~~~ 281 (388)
++...
T Consensus 100 k~~~l 104 (124)
T 2e5i_A 100 RPTRL 104 (124)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 77653
No 189
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.44 E-value=1.1e-13 Score=120.78 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=70.1
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCC---CCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLD---GRTIDP 273 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~---Gr~i~v 273 (388)
...++|||+|||+++++++|+++|++||.|.+|+|++++ +++++|||||+|.+.++|++||+. ++..+. +++|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 356789999999999999999999999999999999995 689999999999999999999987 776665 388888
Q ss_pred CCC
Q psy10362 274 KPC 276 (388)
Q Consensus 274 ~~a 276 (388)
+++
T Consensus 172 ~~a 174 (175)
T 3nmr_A 172 KFA 174 (175)
T ss_dssp EEC
T ss_pred Eec
Confidence 776
No 190
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.44 E-value=6.5e-14 Score=117.29 Aligned_cols=75 Identities=12% Similarity=0.167 Sum_probs=67.9
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
.+.++|||+|| ++++++|+++|++||+|.+|+|. +++|||||+|.+.++|++||+. ++..|.+++|+|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45689999996 79999999999999999999986 4678999999999999999987 899999999999998
Q ss_pred CCCC
Q psy10362 277 NPRT 280 (388)
Q Consensus 277 ~~~~ 280 (388)
....
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7654
No 191
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=2.1e-13 Score=108.60 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=64.0
Q ss_pred CCCC-CCcccCCCcCcHHH----HHHHHhcc-CceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCC
Q psy10362 199 SAGK-PPADYSAYGTYAQY----QQRYFSRY-GEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTI 271 (388)
Q Consensus 199 ~~~~-vfVgnLp~~~te~~----L~~~F~~~-G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i 271 (388)
+..+ |||+|||+++++++ |+++|++| |+|++| |+ |+|||+|.+.++|++|++. ++..|.||+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3455 99999999999987 55899999 599888 33 8999999999999999997 9999999999
Q ss_pred CCCCCCCCCC
Q psy10362 272 DPKPCNPRTL 281 (388)
Q Consensus 272 ~v~~a~~~~~ 281 (388)
+|.+++.+..
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999987653
No 192
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.42 E-value=2e-13 Score=112.94 Aligned_cols=57 Identities=14% Similarity=0.270 Sum_probs=50.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 290 FPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 290 ~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
..+|||+|||.++|+++|+++|++||.|++|+|++|+.++++||||+|++..+++.|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~A 61 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 61 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHH
Confidence 468999999999999999999999999999999999888999999999666544444
No 193
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.40 E-value=2.1e-13 Score=111.42 Aligned_cols=81 Identities=12% Similarity=0.083 Sum_probs=70.8
Q ss_pred CCCCCCCcccCCC-----cCcHHHHHHHHhccCceeEEEEeecCCC-CCceeEEEEEeCChHhHHHHHHh-CCCCCCCCC
Q psy10362 198 PSAGKPPADYSAY-----GTYAQYQQRYFSRYGEVIDCVVMKNNET-GRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRT 270 (388)
Q Consensus 198 ~~~~~vfVgnLp~-----~~te~~L~~~F~~~G~I~~v~i~~dk~t-g~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~ 270 (388)
.++++|+|.||-. +-++++|+++|++||.|++|+|++++.+ ++++||+||+|.+.++|++|++. ++..|.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4568899999963 2368999999999999999999998754 68999999999999999999997 999999999
Q ss_pred CCCCCCCC
Q psy10362 271 IDPKPCNP 278 (388)
Q Consensus 271 i~v~~a~~ 278 (388)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99988764
No 194
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.39 E-value=3.8e-13 Score=108.51 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=48.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhH
Q psy10362 290 FPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQ 343 (388)
Q Consensus 290 ~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~ 343 (388)
.++|||+|||.++|+++|+++|++||.|++|+|++|+. ++++||||+|.+..++
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A 74 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHH
Confidence 46899999999999999999999999999999999864 7899999999655433
No 195
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.38 E-value=3.1e-13 Score=115.21 Aligned_cols=93 Identities=17% Similarity=0.164 Sum_probs=51.3
Q ss_pred EEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEE
Q psy10362 244 FGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCNPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVI 322 (388)
Q Consensus 244 ~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v 322 (388)
|.|++|.|...+..|++. ++....++. .+.... .+......++|||+|||.++|+++|+++|++||.|+.|+|
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~-----~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 79 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGR-----PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI 79 (135)
T ss_dssp ------------------------------CCSCC-----SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcCC-----CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 678888888888888886 433333332 122211 2233345689999999999999999999999999999999
Q ss_pred ecCCC--CCeeEEEEEcCChhh
Q psy10362 323 MSPRT--IRAGITRVPTQELPV 342 (388)
Q Consensus 323 ~~d~~--~~rG~aFV~F~~~~~ 342 (388)
+.++. ++++||||+|++...
T Consensus 80 ~~~~~~g~~~G~afV~F~~~~~ 101 (135)
T 2lea_A 80 PRDRYTKESRGFAFVRFHDKRD 101 (135)
T ss_dssp CCCSSSSSCCSCCEEECSCHHH
T ss_pred EecCCCCccceEEEEEECCHHH
Confidence 98853 789999999955443
No 196
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.37 E-value=3.2e-13 Score=126.02 Aligned_cols=78 Identities=18% Similarity=0.151 Sum_probs=68.9
Q ss_pred CCCCCCCCcccCCCcC---------cHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCC
Q psy10362 197 GPSAGKPPADYSAYGT---------YAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTL 266 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~~---------te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l 266 (388)
..+.++|||+||+.++ +|++|+++|++||+|++|+|+.+ ||||||+|.+.++|+.||++ ++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 79999999999999999999864 68999999999999999997 88888
Q ss_pred ------------CCCCCCCCCCCCCC
Q psy10362 267 ------------DGRTIDPKPCNPRT 280 (388)
Q Consensus 267 ------------~Gr~i~v~~a~~~~ 280 (388)
.++.|.|+++....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999997643
No 197
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.9e-12 Score=103.58 Aligned_cols=61 Identities=31% Similarity=0.558 Sum_probs=52.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEAT 347 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a~ 347 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|++|+. ++++||||+|++..+++.|.
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 69 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 69 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHH
Confidence 34568999999999999999999999999999999999864 68999999996665544443
No 198
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.1e-12 Score=108.05 Aligned_cols=79 Identities=16% Similarity=0.184 Sum_probs=67.1
Q ss_pred CCCCCCCcccCCCcCc-----------HHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCC
Q psy10362 198 PSAGKPPADYSAYGTY-----------AQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHT 265 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~t-----------e~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~ 265 (388)
.+.++|+|.||-...+ +++|+++|++||.|.+|.| .|+ .++|||||+|.+.++|++||+. ++..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4568899999944332 5899999999999999965 554 3799999999999999999987 8899
Q ss_pred CCCCCCCCCCCCCCC
Q psy10362 266 LDGRTIDPKPCNPRT 280 (388)
Q Consensus 266 l~Gr~i~v~~a~~~~ 280 (388)
|.+++|.|.++.+..
T Consensus 89 ~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 89 FGGRQITAQAWDGTT 103 (112)
T ss_dssp ETTEECEEEECCSCC
T ss_pred ECCcEEEEEEeCCCC
Confidence 999999999987654
No 199
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.36 E-value=3.7e-12 Score=100.33 Aligned_cols=56 Identities=25% Similarity=0.252 Sum_probs=49.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhh
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPV 342 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~ 342 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|+++..++++||||+|.+...
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~ 60 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEV 60 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHH
Confidence 34568999999999999999999999999999999998777899999999955543
No 200
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.35 E-value=2.7e-13 Score=137.29 Aligned_cols=55 Identities=18% Similarity=0.335 Sum_probs=48.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC--CCCeeEEEEEcCChhh
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR--TIRAGITRVPTQELPV 342 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~--~~~rG~aFV~F~~~~~ 342 (388)
...++|||+||+..||+++|+++|++||.|+.|+|+.++ .++++||||+|.+...
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~ 156 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERD 156 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHH
Confidence 445799999999999999999999999999999999885 3789999999955433
No 201
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.35 E-value=2.7e-13 Score=118.99 Aligned_cols=77 Identities=14% Similarity=0.238 Sum_probs=69.7
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
...++|||+|||+++++++|+++|++||.|..+ +.+++++|||||+|.+.++|.+||+. ++..|.|++|+|.++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 456789999999999999999999999987665 46889999999999999999999997 889999999999988
Q ss_pred CCC
Q psy10362 277 NPR 279 (388)
Q Consensus 277 ~~~ 279 (388)
.++
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
No 202
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.5e-12 Score=106.28 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=48.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEAT 347 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~ 347 (388)
....++|||+|||.++|+++|+++|++||.|++|+|+++ |+||||+|++.++++.|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai 69 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMV 69 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHH
Confidence 345689999999999999999999999999999999975 799999997665444443
No 203
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=4.4e-12 Score=102.24 Aligned_cols=61 Identities=21% Similarity=0.385 Sum_probs=52.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 286 KNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 286 ~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
.....++|||+|||.++|+++|+++|++||.|+.|+|+.++..+++||||+|.+...++.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A 71 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 71 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHH
Confidence 3456689999999999999999999999999999999999878999999999665444333
No 204
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.33 E-value=4.7e-12 Score=119.84 Aligned_cols=77 Identities=9% Similarity=0.106 Sum_probs=69.7
Q ss_pred CCCCCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCC-CCCCCC
Q psy10362 196 SGPSAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLD-GRTIDP 273 (388)
Q Consensus 196 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~-Gr~i~v 273 (388)
..+..++|||+|||+++++++|+++|++||.|++|+|+.++ +|||||+|.+.++|++||+. ++..|. ++.|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 34556889999999999999999999999999999999764 57999999999999999997 888898 999999
Q ss_pred CCCC
Q psy10362 274 KPCN 277 (388)
Q Consensus 274 ~~a~ 277 (388)
.+++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 8875
No 205
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.33 E-value=2.5e-12 Score=105.74 Aligned_cols=58 Identities=31% Similarity=0.366 Sum_probs=50.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKE 345 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~ 345 (388)
.+.++|||+||+.++|+++|+++|++||.|++|+|++|+. +++|||||+|++..+++.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~ 63 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKE 63 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHH
Confidence 3457999999999999999999999999999999999864 789999999966544333
No 206
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=1.6e-11 Score=100.07 Aligned_cols=79 Identities=19% Similarity=0.207 Sum_probs=58.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHH---hhccccceec
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVL---RRSSTTKVQA 363 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL---~~~~~~~i~~ 363 (388)
..+.++|||+|||.++|+++|+++|++||.|+.|+|+++ |+||||+|++..+++.|....... ...+.++|+.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 345689999999999999999999999999999999853 799999997776555554433221 2234566665
Q ss_pred cCCCcc
Q psy10362 364 PFGATT 369 (388)
Q Consensus 364 ~~~~~~ 369 (388)
+..+..
T Consensus 88 a~~~~~ 93 (104)
T 1wex_A 88 STSKRI 93 (104)
T ss_dssp CSSSSC
T ss_pred ccCccc
Confidence 554443
No 207
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=8.9e-12 Score=104.04 Aligned_cols=78 Identities=13% Similarity=0.135 Sum_probs=59.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHH---Hhhccccceecc
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQV---LRRSSTTKVQAP 364 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~a---L~~~~~~~i~~~ 364 (388)
.+.++|||+|||.++|+++|+++|++||.|++|+|+++ |+||||+|++.++++.|.+.... ....+.++|..+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 34579999999999999999999999999999999975 79999999887666665443332 123346666655
Q ss_pred CCCcc
Q psy10362 365 FGATT 369 (388)
Q Consensus 365 ~~~~~ 369 (388)
..+..
T Consensus 105 ~~k~~ 109 (119)
T 2ad9_A 105 NHKEL 109 (119)
T ss_dssp SSSSC
T ss_pred cCCCC
Confidence 54443
No 208
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=3.2e-12 Score=105.36 Aligned_cols=61 Identities=31% Similarity=0.653 Sum_probs=51.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 286 KNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 286 ~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
.....++|||+|||.++|+++|+++|++||.|+.|+|++++. ++++||||+|.+...++.|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A 75 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 75 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 345668999999999999999999999999999999999863 7899999999665444433
No 209
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.32 E-value=6.6e-12 Score=103.35 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=51.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|++|+. ++++||||+|.+...++.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A 83 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 83 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHH
Confidence 34568999999999999999999999999999999999863 7899999999665444433
No 210
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.32 E-value=1.5e-12 Score=111.70 Aligned_cols=101 Identities=15% Similarity=0.134 Sum_probs=50.1
Q ss_pred eEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEE
Q psy10362 243 GFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVI 322 (388)
Q Consensus 243 G~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v 322 (388)
+++|..|..++.+..++......+.+....-... ...........++|||+|||.++|+++|+++|++|| |+.|+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g---~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i 77 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSG---DSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHI 77 (139)
T ss_dssp ----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEEC
T ss_pred CcccccccCccccchhcccchhccCCCCCCCCCC---CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE
Confidence 5788888887777666654222233332211110 011122334557999999999999999999999999 779999
Q ss_pred ecCCC-CCeeEEEEEcCChhhHHHHHHHHHHH
Q psy10362 323 MSPRT-IRAGITRVPTQELPVQKEATAVQQVL 353 (388)
Q Consensus 323 ~~d~~-~~rG~aFV~F~~~~~~~~a~~a~~aL 353 (388)
++|+. +++|||||+| +..++|.+||
T Consensus 78 ~~d~~g~srGfaFV~F------~~~e~A~~Al 103 (139)
T 2hgn_A 78 EIGPDGRVTGEADVEF------ATHEEAVAAM 103 (139)
T ss_dssp CCSSSSCSSCCCEEEC------SHHHHHHHHT
T ss_pred EECCCCCCceEEEEEe------CCHHHHHHHH
Confidence 98865 7899999999 4455555665
No 211
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=2.5e-12 Score=104.04 Aligned_cols=62 Identities=31% Similarity=0.521 Sum_probs=53.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEATA 348 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a~~ 348 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|++++. ++++||||+|++...++.|..
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~ 76 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 76 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHH
Confidence 45568999999999999999999999999999999999854 789999999977665555533
No 212
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.31 E-value=6.1e-12 Score=101.79 Aligned_cols=76 Identities=20% Similarity=0.199 Sum_probs=56.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHH---hhccccceecc
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVL---RRSSTTKVQAP 364 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL---~~~~~~~i~~~ 364 (388)
.+.++|||+|||.++|+++|+++|++||.|++|+|++ .|+||||+|++..+++.|.+..... ...+.++|+.+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 4568999999999999999999999999999999984 5799999997776555554333321 12334555555
Q ss_pred CCC
Q psy10362 365 FGA 367 (388)
Q Consensus 365 ~~~ 367 (388)
+.+
T Consensus 95 ~~k 97 (100)
T 3r27_A 95 TSQ 97 (100)
T ss_dssp SCS
T ss_pred ccc
Confidence 444
No 213
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=6.8e-12 Score=101.20 Aligned_cols=60 Identities=23% Similarity=0.286 Sum_probs=51.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhc-CCCeeEEEEecCCC-CCeeEEEEEcCChhhHHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNR-YGKVMEVVIMSPRT-IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~-~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~~~~a 346 (388)
....++|||+|||.++|+++|+++|++ ||.|+.|+|+.|+. ++++||||+|.+..+++.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A 67 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRA 67 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHH
Confidence 345689999999999999999999999 99999999999864 6899999999665444433
No 214
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.31 E-value=1.1e-11 Score=103.42 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=62.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChhhHHHHHHHHHHHhh----ccccce
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELPVQKEATAVQQVLRR----SSTTKV 361 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~~~~a~~a~~aL~~----~~~~~i 361 (388)
....++|||+||+.++|+++|+++|++||.|+.|+|++++. ++++||||+|++..+++.| .+.|.. .+.++|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~A---i~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKA---MKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHH---HHHHTTEESSSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHH---HHHcCCCEECCcEEEE
Confidence 34557999999999999999999999999999999999864 6899999999666544444 333333 235555
Q ss_pred eccCCCccCCCC
Q psy10362 362 QAPFGATTLSPP 373 (388)
Q Consensus 362 ~~~~~~~~~~pP 373 (388)
+.+......+|+
T Consensus 109 ~~a~~~~~~~~~ 120 (124)
T 2kt5_A 109 QLVASQIDLEHH 120 (124)
T ss_dssp EEECCTTCCCCC
T ss_pred EEeCCCCCCCCC
Confidence 555554444443
No 215
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.31 E-value=2.1e-12 Score=103.56 Aligned_cols=65 Identities=12% Similarity=0.231 Sum_probs=52.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCC--eeEEEEecCCC--CCeeEEEEEcCChhhHHHHHHHHHHHhh
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGK--VMEVVIMSPRT--IRAGITRVPTQELPVQKEATAVQQVLRR 355 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~--I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a~~a~~aL~~ 355 (388)
...++|||+|||+++|+++|+++|++||. |.+|+|++|+. ++||||||+|.+..++ ..|.+.|..
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A---~~Ai~~lng 75 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDA---SQLLQILQS 75 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHH---HHHHHHHHS
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHH---HHHHHHhcC
Confidence 45579999999999999999999999995 67899999864 7899999999666444 444444444
No 216
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=5.1e-12 Score=101.84 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=52.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|++|+..+++||||+|.+...++.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A 71 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAA 71 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHH
Confidence 355689999999999999999999999999999999999877899999999655443333
No 217
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.31 E-value=1.1e-12 Score=103.41 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=48.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEEecCCC--CCeeEEEEEcCChhhHHHHHHHHHHHhh
Q psy10362 291 PKVFLGGLPSNVTETDLRTFFNRYG--KVMEVVIMSPRT--IRAGITRVPTQELPVQKEATAVQQVLRR 355 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~~~F~~~G--~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a~~a~~aL~~ 355 (388)
.+|||+|||.++|+++|+++|++|| .|++|+|+.|+. +++|||||+|.+.. .|+.|.+.|..
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~---~a~~Ai~~l~g 67 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEA---SSKKLMDLLPK 67 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHH---HHHHHHHHGGG
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHH---HHHHHHHHcCC
Confidence 4799999999999999999999999 999999999864 78999999995543 33334444443
No 218
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.30 E-value=1.1e-11 Score=100.01 Aligned_cols=59 Identities=19% Similarity=0.275 Sum_probs=50.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChhhHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELPVQKE 345 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~~~~ 345 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|+.++. ++++||||+|.+...++.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~ 71 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQA 71 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHH
Confidence 34568999999999999999999999999999999999864 679999999966543333
No 219
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.30 E-value=6.5e-12 Score=102.40 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=51.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|++|+. ++++||||+|.+...++.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 73 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKC 73 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHH
Confidence 34568999999999999999999999999999999999864 6899999999665444333
No 220
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.30 E-value=6.4e-12 Score=103.30 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=51.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC--CCCeeEEEEEcCChhhHHHH
Q psy10362 286 KNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR--TIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 286 ~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~--~~~rG~aFV~F~~~~~~~~a 346 (388)
.....++|||+|||.++|+++|+++|++||.|+.|+|++++ .++++||||+|.+...++.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A 73 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENA 73 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHH
Confidence 34566899999999999999999999999999999999985 37899999999665443333
No 221
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.30 E-value=4.7e-12 Score=111.21 Aligned_cols=99 Identities=13% Similarity=0.164 Sum_probs=50.2
Q ss_pred EEeCChHhHHHHHHh-CCCCC--CCCCCCCCCCCCC---------------CCCCCCCCCCCCeEEEcCCCCCCCHHHHH
Q psy10362 247 VTFADPNNVGVVIQN-CPHTL--DGRTIDPKPCNPR---------------TLQKPKKNSSFPKVFLGGLPSNVTETDLR 308 (388)
Q Consensus 247 V~F~~~~~A~~Ai~~-~~~~l--~Gr~i~v~~a~~~---------------~~~~~~~~~~~~~lfV~nLp~~vtee~L~ 308 (388)
.+|++.++|+.|+.. +.... .++.+........ ....+......++|||+|||..+|+++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 678888888888875 33222 2444443332110 01112223445689999999999999999
Q ss_pred HHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHH
Q psy10362 309 TFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKE 345 (388)
Q Consensus 309 ~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~ 345 (388)
++|++||.|+.|+|+.++. ++++||||+|.+...++.
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 129 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALA 129 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHH
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHH
Confidence 9999999999999998853 689999999965543333
No 222
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=9e-12 Score=98.68 Aligned_cols=59 Identities=25% Similarity=0.421 Sum_probs=50.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
...++|||+|||.++|+++|+++|++||.|+.|+|++++. ++++||||+|.+..+++.|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A 63 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRA 63 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHH
Confidence 3457999999999999999999999999999999999863 7899999999665444333
No 223
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.30 E-value=2.6e-12 Score=100.31 Aligned_cols=60 Identities=20% Similarity=0.445 Sum_probs=51.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|+.++. ++++||||+|.+...++.|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A 69 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKV 69 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHH
Confidence 35568999999999999999999999999999999998863 7899999999665444433
No 224
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.30 E-value=9.9e-13 Score=107.19 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=63.2
Q ss_pred CcccCCCcCcHHHHHHHH------------hccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCC
Q psy10362 204 PADYSAYGTYAQYQQRYF------------SRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRT 270 (388)
Q Consensus 204 fVgnLp~~~te~~L~~~F------------~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~ 270 (388)
.+.+|++.+++++|+++| ++||+|++|+|++++ ++++||||||+|.++++|++|++. ++..+.||+
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 467888889998887776 999999999999986 478999999999999999999997 999999999
Q ss_pred CCCCCC
Q psy10362 271 IDPKPC 276 (388)
Q Consensus 271 i~v~~a 276 (388)
|+|.++
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 988764
No 225
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=9.4e-12 Score=100.27 Aligned_cols=60 Identities=15% Similarity=0.239 Sum_probs=51.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|+.+..++++||||+|.+...++.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A 71 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKA 71 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHH
Confidence 346689999999999999999999999999999999998558899999999665444333
No 226
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1e-11 Score=100.57 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=57.8
Q ss_pred CcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q psy10362 210 YGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPRTL 281 (388)
Q Consensus 210 ~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~~a~~~~~ 281 (388)
.+++|++|+++|++||+|++|+|+ +++||||||+|.++++|+.||+. ...+.++.|+|.++.....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEEccCCCC
Confidence 468999999999999999999998 36889999999999999999997 3457899999999876543
No 227
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=5.3e-12 Score=100.71 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=48.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-----CCeeEEEEEcCChhhH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-----IRAGITRVPTQELPVQ 343 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-----~~rG~aFV~F~~~~~~ 343 (388)
.+.++|||+|||.++|+++|+++|++||.|+.|+|+.++. ++++||||+|.+...+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a 63 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQA 63 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHH
Confidence 3457999999999999999999999999999999998865 6789999999655433
No 228
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=4.9e-12 Score=101.13 Aligned_cols=57 Identities=21% Similarity=0.225 Sum_probs=49.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQK 344 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~ 344 (388)
...++|||+|||.++|+++|+++|++||.|+.|+|++++. ++++||||+|.+...++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 64 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAV 64 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHH
Confidence 4567999999999999999999999999999999999863 78999999996554333
No 229
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.29 E-value=9.8e-13 Score=119.93 Aligned_cols=71 Identities=4% Similarity=-0.026 Sum_probs=63.2
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccCce--eEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYGEV--IDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRT 270 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I--~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~ 270 (388)
++.++|||+|||+++||++|+++|++||.| .+|+|+.++ +.++|||||+|.+.++|.+||.. ++.+|.++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 345789999999999999999999999999 899998875 55679999999999999999997 777887774
No 230
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.29 E-value=1.6e-12 Score=103.04 Aligned_cols=56 Identities=27% Similarity=0.304 Sum_probs=48.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEecCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 291 PKVFLGGLPSNVTETDLRTFFNRYG-KVMEVVIMSPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~~~F~~~G-~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
++|||+|||.++|+++|+++|++|| .|++|+|++|+. +++|||||+|.+..+++.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~A 60 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRW 60 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHH
Confidence 6899999999999999999999999 899999999864 7999999999665444333
No 231
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=9.1e-12 Score=99.81 Aligned_cols=57 Identities=21% Similarity=0.356 Sum_probs=49.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChhhH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELPVQ 343 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~~ 343 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|+.++. ++++||||+|.+...+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a 71 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQA 71 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHH
Confidence 34568999999999999999999999999999999999874 7899999999655433
No 232
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=3.8e-12 Score=104.20 Aligned_cols=62 Identities=21% Similarity=0.382 Sum_probs=53.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 285 KKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 285 ~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
......++|||+||+.++|+++|+++|++||.|+.|+|++|+.++++||||+|++...++.|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A 85 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 85 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHH
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHH
Confidence 34456689999999999999999999999999999999999878999999999766544443
No 233
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=5.2e-12 Score=101.81 Aligned_cols=56 Identities=16% Similarity=0.315 Sum_probs=49.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhh
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPV 342 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~ 342 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|++++. ++++||||+|.+...
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 69 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 69 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHH
Confidence 45568999999999999999999999999999999999853 789999999955543
No 234
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.28 E-value=1.2e-11 Score=100.19 Aligned_cols=61 Identities=18% Similarity=0.325 Sum_probs=51.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecC-C--CCCeeEEEEEcCChhhHHHH
Q psy10362 286 KNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSP-R--TIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 286 ~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d-~--~~~rG~aFV~F~~~~~~~~a 346 (388)
.....++|||+|||.++|+++|+++|++||.|+.|+|+++ + .++++||||+|.+...++.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A 74 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKA 74 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHH
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHH
Confidence 3455689999999999999999999999999999999988 3 47899999999665444333
No 235
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.28 E-value=8e-12 Score=101.53 Aligned_cols=79 Identities=8% Similarity=0.043 Sum_probs=58.7
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHH---hhccccceec
Q psy10362 288 SSFPKVFLGGLPS-NVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVL---RRSSTTKVQA 363 (388)
Q Consensus 288 ~~~~~lfV~nLp~-~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL---~~~~~~~i~~ 363 (388)
.+.++|||+|||. ++|+++|+++|++||.|++|+|+++ ++||||+|++..+++.|...+... ...+.++|+.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 4568999999999 9999999999999999999999965 489999997776555554433321 2334566666
Q ss_pred cCCCccC
Q psy10362 364 PFGATTL 370 (388)
Q Consensus 364 ~~~~~~~ 370 (388)
+..+..+
T Consensus 89 a~~~~~~ 95 (102)
T 1x4d_A 89 SQKYKRI 95 (102)
T ss_dssp ECCCTTS
T ss_pred CCCCCCC
Confidence 5544433
No 236
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=6.3e-12 Score=101.30 Aligned_cols=60 Identities=25% Similarity=0.367 Sum_probs=51.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC--CCCeeEEEEEcCChhhHHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR--TIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~--~~~rG~aFV~F~~~~~~~~a 346 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|+.++ .++++||||+|.+...++.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A 73 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 73 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHH
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHH
Confidence 3456899999999999999999999999999999999986 37899999999665544444
No 237
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=9.9e-12 Score=100.74 Aligned_cols=57 Identities=16% Similarity=0.206 Sum_probs=49.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATA 348 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~ 348 (388)
.+.++|||+|||.++|+++|+++|++||.|++|+|+++ |+||||+|++.++++.|..
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVN 69 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHH
Confidence 45679999999999999999999999999999999965 7999999977765555443
No 238
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=6.9e-12 Score=101.08 Aligned_cols=62 Identities=21% Similarity=0.287 Sum_probs=53.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEATA 348 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a~~ 348 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|+.++. ++++||||+|.+..+++.|..
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEA 73 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHH
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHH
Confidence 34568999999999999999999999999999999998864 689999999977765555533
No 239
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.28 E-value=8.6e-12 Score=103.31 Aligned_cols=58 Identities=26% Similarity=0.439 Sum_probs=50.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChhhHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELPVQKE 345 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~~~~ 345 (388)
...++|||+|||.++|+++|+++|++||.|+.|+|+.++. ++++||||+|.+..+++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~ 63 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHH
Confidence 4457999999999999999999999999999999999864 789999999965543333
No 240
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.28 E-value=2.5e-12 Score=121.08 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=71.4
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCC-CCC---CCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPH-TLD---GRTIDP 273 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~-~l~---Gr~i~v 273 (388)
+.++|||+|||+.+|+++|+++|+.||.|.+|+|+.| .+++++|||||+|.+.++|.+||+. ++. .+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 3578999999999999999999999999999999999 5899999999999999999999997 343 333 899999
Q ss_pred CCCCCCC
Q psy10362 274 KPCNPRT 280 (388)
Q Consensus 274 ~~a~~~~ 280 (388)
.++....
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 8887653
No 241
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1e-11 Score=96.45 Aligned_cols=59 Identities=22% Similarity=0.332 Sum_probs=51.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
...++|||+|||.++|+++|+++|++||.|+.|+|+.++. ++++||||+|++...++.|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A 63 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKA 63 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHH
Confidence 4567999999999999999999999999999999999853 7899999999666544444
No 242
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=2.6e-12 Score=104.50 Aligned_cols=58 Identities=17% Similarity=0.328 Sum_probs=50.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChhhHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELPVQKE 345 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~~~~ 345 (388)
...++|||+|||.++|+++|+++|++||.|++|+|++|+. +++|||||+|++.+++..
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~ 67 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKK 67 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHH
Confidence 3457999999999999999999999999999999999864 789999999955543333
No 243
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.4e-11 Score=100.99 Aligned_cols=59 Identities=22% Similarity=0.232 Sum_probs=50.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChhhHHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~~~~a 346 (388)
...++|||+|||.++|+++|+++|++||.|+.|+|+.++. ++++||||+|++...++.|
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A 72 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQA 72 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHH
Confidence 4567999999999999999999999999999999999865 6899999999665444444
No 244
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.3e-11 Score=99.68 Aligned_cols=56 Identities=23% Similarity=0.291 Sum_probs=49.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChh
Q psy10362 286 KNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELP 341 (388)
Q Consensus 286 ~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~ 341 (388)
.....++|||+|||.++|+++|+++|++||.|+.|+|+.++. ++++||||+|.+..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 68 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 68 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHH
Confidence 345668999999999999999999999999999999999863 78999999995543
No 245
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=2.9e-12 Score=105.66 Aligned_cols=58 Identities=29% Similarity=0.558 Sum_probs=49.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 289 SFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 289 ~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
..++|||+|||.++|+++|+++|++||.|+.|+|+.|+. ++++||||+|.+...++.|
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A 85 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 85 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHH
Confidence 347999999999999999999999999999999999864 7899999999655444333
No 246
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.27 E-value=6.3e-12 Score=99.61 Aligned_cols=59 Identities=24% Similarity=0.214 Sum_probs=50.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChhhHHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~~~~a 346 (388)
...++|||+|||.++|+++|+++|++||.|+.|+|++|+. ++++||||+|++...++.|
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A 73 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYA 73 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHH
Confidence 4457999999999999999999999999999999999865 7899999999666444333
No 247
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=1.4e-11 Score=98.51 Aligned_cols=54 Identities=24% Similarity=0.356 Sum_probs=48.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCee-EEEEecCCC--CCeeEEEEEcCChh
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVM-EVVIMSPRT--IRAGITRVPTQELP 341 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~-~v~v~~d~~--~~rG~aFV~F~~~~ 341 (388)
...++|||+|||.++|+++|+++|++||.|+ .|+|++|+. ++++||||+|.+..
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~ 63 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLA 63 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHH
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHH
Confidence 4568999999999999999999999999999 999999863 78999999995543
No 248
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=8.4e-12 Score=100.30 Aligned_cols=60 Identities=32% Similarity=0.531 Sum_probs=51.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|++++. ++++||||+|.+...++.|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 70 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 70 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHH
Confidence 34568999999999999999999999999999999999864 6899999999665444443
No 249
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.26 E-value=3.4e-12 Score=104.53 Aligned_cols=60 Identities=28% Similarity=0.433 Sum_probs=49.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC--CCCeeEEEEEcCChhhHHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR--TIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~--~~~rG~aFV~F~~~~~~~~a 346 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|++|+ .++++||||+|.+..+++.|
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~A 83 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 83 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHH
Confidence 3456899999999999999999999999999999999986 37899999999665444443
No 250
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.26 E-value=1.1e-11 Score=100.36 Aligned_cols=61 Identities=28% Similarity=0.536 Sum_probs=51.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 286 KNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 286 ~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
.....++|||+|||.++|+++|+++|++||.|+.|+|+.|+. ++++||||+|.+...++.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 71 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKA 71 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHH
Confidence 345568999999999999999999999999999999999864 6899999999665444433
No 251
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.26 E-value=3.4e-12 Score=114.36 Aligned_cols=76 Identities=11% Similarity=0.131 Sum_probs=68.9
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccC-ceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCC-CCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYG-EVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLD-GRTIDPK 274 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~-Gr~i~v~ 274 (388)
++.++|||+|||+++++++|+++|++|| .|.+|+|+.+ .+|||||+|.+.++|.+||+. ++..+. +++|+|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 3468999999999999999999999999 9999999775 268999999999999999996 889999 9999998
Q ss_pred CCCC
Q psy10362 275 PCNP 278 (388)
Q Consensus 275 ~a~~ 278 (388)
++.+
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 8754
No 252
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.25 E-value=2.4e-11 Score=99.37 Aligned_cols=60 Identities=20% Similarity=0.356 Sum_probs=51.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhH
Q psy10362 284 PKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQ 343 (388)
Q Consensus 284 ~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~ 343 (388)
+......++|||+|||.++|+++|+++|++||.|+.|+|++++. ++++||||+|.+...+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A 81 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 81 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHH
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 33445668999999999999999999999999999999998854 6899999999555433
No 253
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.25 E-value=6.8e-12 Score=97.64 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=47.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC--CCCeeEEEEEcCChhh
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR--TIRAGITRVPTQELPV 342 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~--~~~rG~aFV~F~~~~~ 342 (388)
.+.++|||+|||.++|+++|+++|++||.|+.|+|+.++ .++++||||+|.+..+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 60 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWD 60 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHH
Confidence 345799999999999999999999999999999999985 3789999999955543
No 254
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=2.3e-11 Score=99.04 Aligned_cols=59 Identities=17% Similarity=0.390 Sum_probs=49.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|..+. ++++||||+|++...++.|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~-~~~g~afV~f~~~~~A~~A 77 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR-GGPPFAFVEFEDPRDAEDA 77 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS-SSSCCEEEEESCHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcEEEEEECCHHHHHHH
Confidence 3456899999999999999999999999999999997653 5799999999665443333
No 255
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=4.2e-12 Score=102.90 Aligned_cols=58 Identities=26% Similarity=0.244 Sum_probs=48.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChhhHHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~~~~a 346 (388)
...++|||+|||.++|+++|+++|++||. +.|+|++|+. ++++||||+|++.+.++.|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~A 71 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAA 71 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHH
Confidence 44579999999999999999999999995 5999998865 7899999999666544444
No 256
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.24 E-value=8.2e-12 Score=97.61 Aligned_cols=55 Identities=16% Similarity=0.326 Sum_probs=48.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC--CCCeeEEEEEcCChhhHH
Q psy10362 290 FPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR--TIRAGITRVPTQELPVQK 344 (388)
Q Consensus 290 ~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~--~~~rG~aFV~F~~~~~~~ 344 (388)
.++|||+|||.++|+++|+++|++||.|+.|+|+.++ .++++||||+|.+..+++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 62 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVR 62 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHH
Confidence 3689999999999999999999999999999999885 378999999996654333
No 257
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.24 E-value=5.5e-12 Score=100.43 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=57.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHHHHHHHHHhhc----cccceec
Q psy10362 290 FPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEATAVQQVLRRS----STTKVQA 363 (388)
Q Consensus 290 ~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a~~a~~aL~~~----~~~~i~~ 363 (388)
.++|||+|||.++|+++|+++|++||.|+.|+|+.++. ++++||||+|.+...++.| .+.|... +.++|..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A---i~~l~g~~~~g~~l~V~~ 78 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA---VRNLNGYQLGSRFLKCGY 78 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHH---HHHHTTCEETTEECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHH---HHHhCCCeECCeEEEEEE
Confidence 47999999999999999999999999999999999863 7899999999665444433 3333332 3455554
Q ss_pred cCCC
Q psy10362 364 PFGA 367 (388)
Q Consensus 364 ~~~~ 367 (388)
+..+
T Consensus 79 a~~~ 82 (96)
T 2x1f_A 79 SSNS 82 (96)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 4433
No 258
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=7.8e-12 Score=101.37 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=49.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEEecCCC-CCeeEEEEEcCChhhHHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVME-VVIMSPRT-IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~-v~v~~d~~-~~rG~aFV~F~~~~~~~~a 346 (388)
...++|||+|||.++|+++|+++|+.||.|+. |+|+.|.. +++|||||+|++...++.|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A 73 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKA 73 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHH
Confidence 45689999999999999999999999999998 88888843 7899999999665444444
No 259
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=8.5e-12 Score=99.58 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=49.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLR----TFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQK 344 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~----~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~ 344 (388)
...++|||+|||.++|+++|+ ++|++||.|++|+|++|+.. ++||||+|++..+++
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~ 66 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAI 66 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHH
Confidence 345799999999999999999 99999999999999998766 999999996654333
No 260
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.24 E-value=2.2e-11 Score=97.49 Aligned_cols=58 Identities=22% Similarity=0.383 Sum_probs=50.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEEecCCC--CCeeEEEEEcCChhhH
Q psy10362 286 KNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVME--------VVIMSPRT--IRAGITRVPTQELPVQ 343 (388)
Q Consensus 286 ~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~--------v~v~~d~~--~~rG~aFV~F~~~~~~ 343 (388)
.....++|||+|||.++|+++|+++|++||.|+. |+|+.|+. ++++||||+|.+..++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a 76 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSA 76 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHH
Confidence 3455689999999999999999999999999999 99998864 7899999999555433
No 261
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=4e-11 Score=98.32 Aligned_cols=54 Identities=15% Similarity=0.394 Sum_probs=48.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCCh
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQEL 340 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~ 340 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|++++. ++++||||+|.+.
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~ 76 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMEST 76 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCH
Confidence 34568999999999999999999999999999999999864 6899999999554
No 262
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=8.4e-12 Score=100.29 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=51.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|+.|+. ++++||||+|.+...++.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 70 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 70 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHH
Confidence 34568999999999999999999999999999999998854 6899999999665444333
No 263
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.24 E-value=5.7e-12 Score=116.20 Aligned_cols=76 Identities=11% Similarity=0.131 Sum_probs=68.9
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhccC-ceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCC-CCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRYG-EVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLD-GRTIDPK 274 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~-Gr~i~v~ 274 (388)
++.++|||+|||+++++++|+++|++|| .|.+|+|+.+ +++||||+|.+.++|++||+. ++..|. +++|+|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4468899999999999999999999999 9999999764 367999999999999999996 889999 9999999
Q ss_pred CCCC
Q psy10362 275 PCNP 278 (388)
Q Consensus 275 ~a~~ 278 (388)
++++
T Consensus 224 ~a~~ 227 (229)
T 2adc_A 224 FSKS 227 (229)
T ss_dssp ECSS
T ss_pred EecC
Confidence 8865
No 264
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=1.8e-11 Score=96.85 Aligned_cols=56 Identities=25% Similarity=0.288 Sum_probs=49.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhh
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPV 342 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~ 342 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|++++. ++++||||+|.+..+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~ 69 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 69 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHH
Confidence 34567999999999999999999999999999999998864 689999999955543
No 265
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.22 E-value=2.5e-11 Score=102.57 Aligned_cols=58 Identities=26% Similarity=0.295 Sum_probs=50.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQK 344 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~ 344 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|++|+. ++++||||+|.+...++
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~ 102 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAK 102 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHH
Confidence 34568999999999999999999999999999999999864 78999999996554333
No 266
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1.8e-11 Score=98.88 Aligned_cols=55 Identities=25% Similarity=0.358 Sum_probs=48.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC---CCCeeEEEEEcCChhhH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR---TIRAGITRVPTQELPVQ 343 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~---~~~rG~aFV~F~~~~~~ 343 (388)
...++|||+|||.++|+++|+++|++|| |+.|+|+.++ .++++||||+|.+...+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a 70 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSL 70 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHH
Confidence 4558999999999999999999999999 9999999986 46899999999555433
No 267
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.22 E-value=2.1e-11 Score=100.71 Aligned_cols=76 Identities=12% Similarity=0.100 Sum_probs=56.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHH---Hhhcccccee
Q psy10362 287 NSSFPKVFLGGLPSN-VTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQV---LRRSSTTKVQ 362 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~-vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~a---L~~~~~~~i~ 362 (388)
..+.++|||+|||.+ +|+++|+++|++||.|++|+|+ +.|+||||+|++..+++.|...+.. ....+.++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM----RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 345689999999998 9999999999999999999998 4579999999776555544433221 1223455665
Q ss_pred ccCC
Q psy10362 363 APFG 366 (388)
Q Consensus 363 ~~~~ 366 (388)
.+..
T Consensus 98 ~a~~ 101 (112)
T 1x4f_A 98 LSEK 101 (112)
T ss_dssp EECS
T ss_pred ECcc
Confidence 5443
No 268
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1.6e-11 Score=97.49 Aligned_cols=54 Identities=20% Similarity=0.355 Sum_probs=48.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEE-EEecCCC--CCeeEEEEEcCChh
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEV-VIMSPRT--IRAGITRVPTQELP 341 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v-~v~~d~~--~~rG~aFV~F~~~~ 341 (388)
...++|||+|||.++|+++|+++|++||.|+.| +|++|+. ++++||||+|.+..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~ 59 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFD 59 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHH
Confidence 356899999999999999999999999999999 9999853 68999999995543
No 269
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.22 E-value=3.8e-11 Score=96.79 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=48.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQK 344 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~ 344 (388)
....++|||+|||.++|+++|+++|++|+ |+.|+|++|+. ++++||||+|++...++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~ 70 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLK 70 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHH
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHH
Confidence 34568999999999999999999999996 99999999864 78999999995554333
No 270
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.22 E-value=9.8e-12 Score=96.30 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=48.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChh
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELP 341 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~ 341 (388)
.+.++|||+|||.++|+++|+++|++||.|+.|+|+.|+. ++++||||+|.+..
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 60 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAE 60 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHH
Confidence 4568999999999999999999999999999999998853 58999999995553
No 271
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=2.3e-11 Score=99.59 Aligned_cols=61 Identities=28% Similarity=0.419 Sum_probs=50.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCee--------EEEEecCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 286 KNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVM--------EVVIMSPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 286 ~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~--------~v~v~~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
.....++|||+|||.++|+++|+++|++||.|+ .|+|+.|+. ++++||||+|.+...++.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 81 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAA 81 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHH
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHH
Confidence 345668999999999999999999999999999 699998853 7899999999665443333
No 272
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.21 E-value=1.8e-11 Score=99.15 Aligned_cols=56 Identities=16% Similarity=0.290 Sum_probs=49.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChhh
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELPV 342 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~ 342 (388)
....++|||+|||..+|+++|+++|++||.|+.|+|+.++. ++++||||+|.+...
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 82 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKAD 82 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHH
Confidence 34567999999999999999999999999999999998864 689999999955433
No 273
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.21 E-value=4.5e-12 Score=103.47 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=67.2
Q ss_pred CCCCCCcccC--CCcC--------cHHHHHHHHhccCceeEEEEeecCCC--CCceeEEEEEeCChHhHHHHHHh-CCCC
Q psy10362 199 SAGKPPADYS--AYGT--------YAQYQQRYFSRYGEVIDCVVMKNNET--GRSRGFGFVTFADPNNVGVVIQN-CPHT 265 (388)
Q Consensus 199 ~~~~vfVgnL--p~~~--------te~~L~~~F~~~G~I~~v~i~~dk~t--g~skG~gFV~F~~~~~A~~Ai~~-~~~~ 265 (388)
+++.|.|.|+ +.++ .++||+++|++||.|++|+|++++.+ ++++||+||+|.+.++|++||+. ++..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4577788887 3333 34689999999999999999998765 46899999999999999999997 9999
Q ss_pred CCCCCCCCCCCCC
Q psy10362 266 LDGRTIDPKPCNP 278 (388)
Q Consensus 266 l~Gr~i~v~~a~~ 278 (388)
|.||.|.|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999877543
No 274
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=4.1e-11 Score=96.88 Aligned_cols=57 Identities=21% Similarity=0.286 Sum_probs=49.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQK 344 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~ 344 (388)
...++|||+|||.++|+++|+++|++||.|+.|+|+.|+. ++++||||+|.+...++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 79 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQ 79 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHH
Confidence 4457899999999999999999999999999999998864 68999999996554333
No 275
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.21 E-value=2.2e-11 Score=100.50 Aligned_cols=55 Identities=20% Similarity=0.304 Sum_probs=48.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChh
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELP 341 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~ 341 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|++|+. ++++|+||+|.+..
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 93 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPD 93 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHH
Confidence 44568999999999999999999999999999999998864 78999999995553
No 276
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.21 E-value=2.7e-11 Score=93.39 Aligned_cols=53 Identities=21% Similarity=0.240 Sum_probs=47.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhH
Q psy10362 291 PKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQ 343 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~ 343 (388)
.+|||+|||.++|+++|+++|++||.|+.|+|+.++. ++++||||+|.+..++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a 56 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDA 56 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHH
Confidence 4899999999999999999999999999999998853 7899999999655433
No 277
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.21 E-value=2.5e-11 Score=103.16 Aligned_cols=59 Identities=25% Similarity=0.411 Sum_probs=50.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKE 345 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~ 345 (388)
....++|||+||+.++|+++|+++|++||.|++|+|++++. ++++||||+|++..+++.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 99 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQ 99 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHH
Confidence 34558999999999999999999999999999999999864 689999999966544333
No 278
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.21 E-value=7.4e-12 Score=107.01 Aligned_cols=56 Identities=20% Similarity=0.141 Sum_probs=49.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEEecCCC-CCeeEEEEEcCChhhH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGK---VMEVVIMSPRT-IRAGITRVPTQELPVQ 343 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~---I~~v~v~~d~~-~~rG~aFV~F~~~~~~ 343 (388)
...++|||+|||.++|+++|+++|+.||. |+.|+|++|+. +++|||||+|++...+
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a 101 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDV 101 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHH
Confidence 45579999999999999999999999999 89999998865 7899999999555433
No 279
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.21 E-value=4.5e-11 Score=95.88 Aligned_cols=72 Identities=21% Similarity=0.266 Sum_probs=55.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHH-HHHHhhccccceeccC
Q psy10362 291 PKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAV-QQVLRRSSTTKVQAPF 365 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a-~~aL~~~~~~~i~~~~ 365 (388)
++|||+|||.++|+++|+++|++||.|+.|+|+.+ +++||||+|++..+++.|.+. +......+.++|..+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEcc
Confidence 48999999999999999999999999999999987 899999999776655555432 2222233355555443
No 280
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.20 E-value=1.9e-11 Score=103.25 Aligned_cols=59 Identities=10% Similarity=0.204 Sum_probs=50.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE--EEEecCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVME--VVIMSPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~--v~v~~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
....++|||+|||.++|+++|+++|++||.|+. |+|++|+. +++|||||+|++. .++.|
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~A 82 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQL 82 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHH
Confidence 355689999999999999999999999999977 99999973 7899999999555 44333
No 281
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=2e-11 Score=99.29 Aligned_cols=59 Identities=19% Similarity=0.314 Sum_probs=49.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCC-eeEEEEe-cCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGK-VMEVVIM-SPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~-I~~v~v~-~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
...++|||+|||.++|+++|+++|++||. |++|+|+ .|+. ++++||||+|.+...++.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A 68 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA 68 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHH
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHH
Confidence 34579999999999999999999999998 9999998 6665 7899999999665444433
No 282
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.20 E-value=5.7e-11 Score=96.97 Aligned_cols=73 Identities=23% Similarity=0.401 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHH
Q psy10362 266 LDGRTIDPKPCNPRTLQKPKKNSSFPKVFLGGLPSN-VTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQK 344 (388)
Q Consensus 266 l~Gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~-vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~ 344 (388)
..++.|.++.+...... ......++|||+|||.+ +|+++|+++|++||.|+.|+| +++||||+|++...++
T Consensus 5 ~~g~~~~~~~s~~~~~~--~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 5 SSGMSLKLQASNVTNKN--DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CCSCCCCCCCCCSCCSC--CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHH
T ss_pred CCCcccccccCCCCCCC--CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHH
Confidence 56778888776654332 22344579999999999 999999999999999999999 5799999997765444
Q ss_pred HH
Q psy10362 345 EA 346 (388)
Q Consensus 345 ~a 346 (388)
.|
T Consensus 77 ~A 78 (110)
T 1wf1_A 77 AA 78 (110)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 283
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.20 E-value=9e-12 Score=94.68 Aligned_cols=57 Identities=26% Similarity=0.442 Sum_probs=49.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHHH
Q psy10362 291 PKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEAT 347 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a~ 347 (388)
++|||+|||.++|+++|+++|++||.|+.|+|+.++. ++++||||+|.+..+++.|.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~ 59 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL 59 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHH
Confidence 4799999999999999999999999999999999863 78999999997665544443
No 284
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.20 E-value=6.4e-12 Score=95.22 Aligned_cols=51 Identities=31% Similarity=0.599 Sum_probs=46.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhh
Q psy10362 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPV 342 (388)
Q Consensus 292 ~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~ 342 (388)
+|||+|||.++|+++|+++|++||.|+.|+|+.++. ++++||||+|.+...
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 53 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI 53 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHH
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHH
Confidence 589999999999999999999999999999998863 789999999966543
No 285
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.20 E-value=2.6e-11 Score=93.51 Aligned_cols=65 Identities=9% Similarity=0.199 Sum_probs=52.7
Q ss_pred CeEEEcCCCCCC------CHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhhccccce
Q psy10362 291 PKVFLGGLPSNV------TETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRRSSTTKV 361 (388)
Q Consensus 291 ~~lfV~nLp~~v------tee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~~~~i 361 (388)
++|||+|||..+ |+++|+++|++||.|+.|+|.++..++++||||+|++ .++|.+|+...+...+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~------~~~A~~Ai~~lng~~~ 72 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYAS------PAHAVDAVKNADGYKL 72 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESS------HHHHHHHHTTSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECC------HHHHHHHHHHhcCccc
Confidence 689999999999 7799999999999999999986666899999999944 4455555555554444
No 286
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.9e-11 Score=95.57 Aligned_cols=55 Identities=29% Similarity=0.505 Sum_probs=48.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChh
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELP 341 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~ 341 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|+.++. ++++||||+|.+..
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~ 69 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKD 69 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHH
Confidence 34568999999999999999999999999999999999864 68999999995543
No 287
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.19 E-value=3.8e-11 Score=104.17 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=50.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
...++|||+|||.++|+++|+++|++||.|+.|+|++++. ++++||||+|++..+++.|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 97 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENA 97 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHH
Confidence 4568999999999999999999999999999999999864 6899999999655443333
No 288
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.19 E-value=3.6e-11 Score=93.60 Aligned_cols=56 Identities=25% Similarity=0.374 Sum_probs=48.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC---CCeeEEEEEcCChhhHH
Q psy10362 289 SFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT---IRAGITRVPTQELPVQK 344 (388)
Q Consensus 289 ~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~---~~rG~aFV~F~~~~~~~ 344 (388)
..++|||+|||.++|+++|+++|++||.|+.|+|+.++. ++++||||+|.+..+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~ 61 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 61 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHH
Confidence 457999999999999999999999999999999998874 38999999995554333
No 289
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.19 E-value=3.7e-11 Score=97.90 Aligned_cols=48 Identities=23% Similarity=0.258 Sum_probs=44.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCCh
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQEL 340 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~ 340 (388)
...++|||+|||.++|+++|+++|++||.|+.|+|+.| +||||+|++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~ 60 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRK 60 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCH
Confidence 45689999999999999999999999999999999987 8999999554
No 290
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=1.6e-11 Score=100.77 Aligned_cols=58 Identities=33% Similarity=0.387 Sum_probs=51.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHHH
Q psy10362 290 FPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEAT 347 (388)
Q Consensus 290 ~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a~ 347 (388)
.++|||+|||.++|+++|+++|++||.|+.|+|+.|+. ++++||||+|.+...++.|.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 84 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI 84 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH
Confidence 37999999999999999999999999999999999874 68999999998776666554
No 291
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.19 E-value=2.3e-11 Score=99.77 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=48.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHhhcCCCeeEEEEecCCC-----CCeeEEEEEcCChhhHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLR---TFFNRYGKVMEVVIMSPRT-----IRAGITRVPTQELPVQK 344 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~---~~F~~~G~I~~v~v~~d~~-----~~rG~aFV~F~~~~~~~ 344 (388)
...++|||+|||.++|+++|+ ++|++||.|+.|+|++++. ++++||||+|++.++++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~ 77 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDAL 77 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHH
Confidence 345799999999999999999 9999999999999998864 56799999996554333
No 292
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.19 E-value=3.1e-11 Score=95.19 Aligned_cols=55 Identities=29% Similarity=0.480 Sum_probs=47.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQK 344 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~ 344 (388)
....++|||+|||.++|+++|+++|++||.|++|+|+++ +||||||+|++.++++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~ 62 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQ 62 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHH
Confidence 345689999999999999999999999999999999974 8999999997765443
No 293
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.19 E-value=2.1e-11 Score=102.89 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=50.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCee--EEEEecCCC-CCeeEEEEEcCChhhHHHHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVM--EVVIMSPRT-IRAGITRVPTQELPVQKEATA 348 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~--~v~v~~d~~-~~rG~aFV~F~~~~~~~~a~~ 348 (388)
...++|||+|||.++|+++|+++|+.| .|+ .|+|++|+. +++|||||+|++...++.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~ 102 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 102 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH
Confidence 445789999999999999999999999 777 899998865 789999999977665554433
No 294
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.18 E-value=1.1e-11 Score=99.58 Aligned_cols=58 Identities=24% Similarity=0.333 Sum_probs=47.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC---CCCeeEEEEEcCChhhHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR---TIRAGITRVPTQELPVQKE 345 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~---~~~rG~aFV~F~~~~~~~~ 345 (388)
....++|||+||+.++|+++|+++|++|| |++|+|++++ .++++||||+|.+..+++.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~ 76 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLS 76 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHH
Confidence 34568999999999999999999999999 9999999986 3789999999965543333
No 295
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.18 E-value=1.1e-11 Score=121.31 Aligned_cols=109 Identities=6% Similarity=0.047 Sum_probs=75.6
Q ss_pred CCCCCCCCccc--CCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCC---CCC-
Q psy10362 197 GPSAGKPPADY--SAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTL---DGR- 269 (388)
Q Consensus 197 ~~~~~~vfVgn--Lp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l---~Gr- 269 (388)
..+.++|||+| |++.+||++|+++|++||+|.+|+|.. +||||||+|.+.++|++||+. ++.++ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45668999999 589999999999999999999887753 468999999999999999997 66655 244
Q ss_pred -CCCCCCCCCCCCCCC-CCCCCCCeEEEcCCCCCCCHHHHHHHhhcC
Q psy10362 270 -TIDPKPCNPRTLQKP-KKNSSFPKVFLGGLPSNVTETDLRTFFNRY 314 (388)
Q Consensus 270 -~i~v~~a~~~~~~~~-~~~~~~~~lfV~nLp~~vtee~L~~~F~~~ 314 (388)
.|.+.++........ ......- |++ ++..++++|-.++.+..
T Consensus 89 ~~ly~~~~~~~~~~~~~~~~lp~G-l~~--~p~fis~~Ee~~Ll~~i 132 (345)
T 3tht_A 89 ITLYLNFVEKVQWKELRPQALPPG-LMV--VEEIISSEEEKMLLESV 132 (345)
T ss_dssp EECEEEECSSEEEEEEECCSCCTT-EEE--ETTCSCHHHHHHHHTTC
T ss_pred eEEEEEEeecccccccccccCCCc-eEE--EcCcCCHHHHHHHHHhc
Confidence 355555432211100 0111112 322 45667887777776654
No 296
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.18 E-value=6.9e-12 Score=94.96 Aligned_cols=55 Identities=25% Similarity=0.496 Sum_probs=47.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 292 ~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
+|||+|||.++|+++|+++|++||.|+.|++++++. ++++||||+|.+...++.|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A 57 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 57 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHH
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHH
Confidence 599999999999999999999999999999998864 7899999999666544433
No 297
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=7.7e-11 Score=92.58 Aligned_cols=54 Identities=33% Similarity=0.636 Sum_probs=46.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|+ ++||||+|.+...++.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A 58 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDA 58 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHH
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHH
Confidence 3456899999999999999999999999999999998 57999999665443333
No 298
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.17 E-value=1.2e-11 Score=102.71 Aligned_cols=59 Identities=24% Similarity=0.183 Sum_probs=50.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEEecCCC-CCeeEEEEEcCChhhHHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGK---VMEVVIMSPRT-IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~---I~~v~v~~d~~-~~rG~aFV~F~~~~~~~~a 346 (388)
...++|||+|||.++|+++|+++|+.||. |+.|+|++|+. +++|||||+|++...++.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~A 77 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLA 77 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHH
Confidence 44579999999999999999999999999 89999998865 7899999999655444433
No 299
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.16 E-value=8e-11 Score=103.43 Aligned_cols=90 Identities=16% Similarity=0.214 Sum_probs=62.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhhcc------ccce
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRRSS------TTKV 361 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~------~~~i 361 (388)
.+..+|||+||+..+|+++|+++|++||.|++|+|+.+ ++++||||+|++.. .|+.|++.|.... .++|
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k--~~rgfAFVeF~d~~---~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPV---SAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES--SSCEEEEEEESCHH---HHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCCEEEEEECCHH---HHHHHHHHhCCCEecCCCcEEEE
Confidence 34467999999999999999999999999999999854 46899999996654 4445555555543 3445
Q ss_pred eccCCCccCCCCCCCCCCCCceeee
Q psy10362 362 QAPFGATTLSPPNLTTPTGECRTFT 386 (388)
Q Consensus 362 ~~~~~~~~~~pP~~~~~~~~~r~ft 386 (388)
+.++.+.. .......++|-||
T Consensus 119 ~~Ak~~~l----~vk~nn~rsrDyt 139 (164)
T 1sjr_A 119 DFSKLTSL----NVKYNNDKSRDYT 139 (164)
T ss_dssp EECSSSSC----CCCCCSSSEEESS
T ss_pred EEecCCcc----cccccCCCCcccc
Confidence 54443322 1223345556565
No 300
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.16 E-value=2.7e-11 Score=98.69 Aligned_cols=57 Identities=14% Similarity=0.203 Sum_probs=49.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQK 344 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~ 344 (388)
...++|||+|||.++|+++|+++|++||.|+.|+|+.++. ++++||||+|.+...++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 82 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQAL 82 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHH
Confidence 4557999999999999999999999999999999998863 78999999996554333
No 301
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.16 E-value=8.9e-11 Score=93.52 Aligned_cols=53 Identities=17% Similarity=0.377 Sum_probs=45.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQK 344 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~ 344 (388)
...++|||+|||.++|+++|+++|++||.|+.|+|.++ ++||||+|.+...++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~ 67 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQ 67 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHH
Confidence 44579999999999999999999999999999999864 789999996554333
No 302
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=6e-11 Score=93.29 Aligned_cols=53 Identities=25% Similarity=0.294 Sum_probs=47.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChh
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELP 341 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~ 341 (388)
...++|||+|||.++|+++|+++|+.| .|+.|+|+++.. ++++||||+|++..
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~ 61 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEE 61 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHH
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHH
Confidence 456899999999999999999999999 999999999843 78999999995543
No 303
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.16 E-value=8.7e-11 Score=93.93 Aligned_cols=56 Identities=29% Similarity=0.545 Sum_probs=48.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|.++ ++||||+|++...++.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~----kg~afV~f~~~~~a~~a 67 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETRTLAEIA 67 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT----TTEEEEECSSSHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCEEEEEECCHHHHHHH
Confidence 355689999999999999999999999999999999954 79999999776544444
No 304
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=4.3e-11 Score=98.54 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=50.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCe-eEEEEecCCC-CCeeEEEEEcCChhhHHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKV-MEVVIMSPRT-IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I-~~v~v~~d~~-~~rG~aFV~F~~~~~~~~a 346 (388)
....++|||+|||.++|+++|+++|+.||.| ..|+|++|+. ++++||||+|++...++.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~A 73 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 73 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHH
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHH
Confidence 3456899999999999999999999999999 8999999874 6899999999555443333
No 305
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=2.4e-11 Score=99.87 Aligned_cols=55 Identities=25% Similarity=0.277 Sum_probs=48.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChhhHHHH
Q psy10362 291 PKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~~~~a 346 (388)
.+|||+|||.++|+++|+++|+.| .|+.|+|++|+. +++|||||+|++...++.|
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~A 72 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEA 72 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHH
Confidence 689999999999999999999999 999999999865 7899999999665444443
No 306
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.15 E-value=1.5e-11 Score=102.63 Aligned_cols=80 Identities=11% Similarity=0.079 Sum_probs=68.3
Q ss_pred CCCCCCcccCCC--cC---cHHHHHHHHhccCceeEEEEeecCC----CCCceeEEEEEeCChHhHHHHHHh-CCCCCCC
Q psy10362 199 SAGKPPADYSAY--GT---YAQYQQRYFSRYGEVIDCVVMKNNE----TGRSRGFGFVTFADPNNVGVVIQN-CPHTLDG 268 (388)
Q Consensus 199 ~~~~vfVgnLp~--~~---te~~L~~~F~~~G~I~~v~i~~dk~----tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~G 268 (388)
+++.|+|.||-. ++ -++||++.|++||.|.+|+|++++. +++++||+||+|.+.++|.+||+. ++..|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 467889999832 22 3589999999999999999999865 467899999999999999999998 9999999
Q ss_pred CCCCCCCCCC
Q psy10362 269 RTIDPKPCNP 278 (388)
Q Consensus 269 r~i~v~~a~~ 278 (388)
|.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999887643
No 307
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.15 E-value=1.2e-11 Score=99.42 Aligned_cols=60 Identities=33% Similarity=0.509 Sum_probs=51.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChhhHHHHHH
Q psy10362 289 SFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELPVQKEATA 348 (388)
Q Consensus 289 ~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~~~~a~~ 348 (388)
..++|||+|||.++|+++|+++|++||.|+.|+|+.|+. ++++||||+|++...++.|..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 447999999999999999999999999999999999864 689999999977665555433
No 308
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.15 E-value=8.9e-11 Score=94.14 Aligned_cols=51 Identities=18% Similarity=0.364 Sum_probs=45.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhh
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPV 342 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~ 342 (388)
...++|||+|||.++|+++|+++|++||.|++|+|. ++++||||+|++..+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~----~~~g~afV~f~~~~~ 75 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY----PEKGCCFIKYDTHEQ 75 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE----TTTTEEEEECSSHHH
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe----cCCCEEEEEECCHHH
Confidence 345799999999999999999999999999999998 578999999955543
No 309
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=7e-11 Score=96.26 Aligned_cols=55 Identities=24% Similarity=0.416 Sum_probs=47.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
...++|||+|||.++|+++|+++|++||.|+.|+|+.+ ++||||+|.+...++.|
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A 77 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHA 77 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHH
Confidence 45689999999999999999999999999999999976 79999999665444333
No 310
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=4.3e-11 Score=96.34 Aligned_cols=53 Identities=26% Similarity=0.433 Sum_probs=47.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChh
Q psy10362 289 SFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELP 341 (388)
Q Consensus 289 ~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~ 341 (388)
..++|||+|||.++|+++|+++|++||.|+.|+|+.++. ++++||||+|.+..
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 61 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQE 61 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHH
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHH
Confidence 347999999999999999999999999999999998853 68999999995543
No 311
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.14 E-value=1.9e-11 Score=99.62 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=50.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEEecCCC-CCeeEEEEEcCChhhHHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGK---VMEVVIMSPRT-IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~---I~~v~v~~d~~-~~rG~aFV~F~~~~~~~~a 346 (388)
...++|||+|||.++|+++|+++|+.||. |+.|+|++|+. +++|||||+|.+...++.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~A 71 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 71 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHH
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHH
Confidence 45579999999999999999999999988 89999998875 7999999999655443333
No 312
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=3.1e-11 Score=99.45 Aligned_cols=58 Identities=28% Similarity=0.410 Sum_probs=48.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-----CCeeEEEEEcCChhhHHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-----IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-----~~rG~aFV~F~~~~~~~~a 346 (388)
...++|||+|||.++|+++|+++|++||.|+ ++++.++. ++++||||+|++..+++.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~A 68 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQAL 68 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHH
Confidence 3457999999999999999999999999999 88887753 6799999999665443333
No 313
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=2e-11 Score=102.58 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=48.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCe----eEEEEecCCC-CCeeEEEEEcCChhhHHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKV----MEVVIMSPRT-IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I----~~v~v~~d~~-~~rG~aFV~F~~~~~~~~a 346 (388)
....+|||+|||+++|+++|+++|++||.| +.|+|++|+. +++|||||+|++...++.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~A 84 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 84 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHH
Confidence 345799999999999999999999999976 6899998854 7899999999655443333
No 314
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.14 E-value=1.9e-11 Score=96.73 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=46.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChh
Q psy10362 289 SFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELP 341 (388)
Q Consensus 289 ~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~ 341 (388)
..++|||+|||.++|+++|+++|++||.|+.++++.++. ++++||||+|.+..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~ 68 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRD 68 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHH
Confidence 457999999999999999999999999999888887754 68999999995543
No 315
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.14 E-value=4.7e-11 Score=104.25 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=47.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEEecCCC--CCeeEEEEEcCChhhHH
Q psy10362 289 SFPKVFLGGLPSNVTETDLRTFFNRYG--KVMEVVIMSPRT--IRAGITRVPTQELPVQK 344 (388)
Q Consensus 289 ~~~~lfV~nLp~~vtee~L~~~F~~~G--~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~ 344 (388)
..++|||+||+.++|+++|+++|++|| .|++|+|+.|+. +++|||||+|.+..+++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~ 113 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVH 113 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHH
Confidence 447999999999999999999999999 999999999864 78999999995554333
No 316
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.14 E-value=7.2e-11 Score=98.26 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=49.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC--CCCeeEEEEEcCChhhHHHH
Q psy10362 290 FPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR--TIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 290 ~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~--~~~rG~aFV~F~~~~~~~~a 346 (388)
.++|||+|||.++|+++|+++|++||.|+.|+|++|+ .++++||||+|.+...++.|
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A 94 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAA 94 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHH
Confidence 4799999999999999999999999999999999985 37899999999665443333
No 317
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.14 E-value=4.9e-11 Score=99.58 Aligned_cols=60 Identities=22% Similarity=0.290 Sum_probs=50.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhHHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a 346 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|+.++. ++++||||+|.+...++.|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A 80 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAA 80 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHH
Confidence 34557999999999999999999999999999999998853 6899999999665444333
No 318
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.14 E-value=9.9e-12 Score=100.07 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=48.0
Q ss_pred CCeEEEcCCCC------CCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChhhH
Q psy10362 290 FPKVFLGGLPS------NVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELPVQ 343 (388)
Q Consensus 290 ~~~lfV~nLp~------~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~~~ 343 (388)
.++|||+|||. ++++++|+++|++||.|++|+|++|+. +++|||||+|.+...+
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A 67 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDA 67 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHH
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 47899999999 999999999999999999999999874 6899999999555333
No 319
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.13 E-value=3.5e-11 Score=95.91 Aligned_cols=54 Identities=15% Similarity=0.205 Sum_probs=46.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChh
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELP 341 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~ 341 (388)
...++|||+|||.++|+++|+++|++||.|+.++++.++. ++++||||+|++..
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~ 68 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRD 68 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHH
Confidence 4457899999999999999999999999999888877653 68999999995553
No 320
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=7.4e-11 Score=92.67 Aligned_cols=54 Identities=26% Similarity=0.432 Sum_probs=45.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|+++ ||||+|.+...++.|
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~------~afV~f~~~~~a~~A 59 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD------YAFVHMEKEADAKAA 59 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS------CEEEEESCHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC------EEEEEECCHHHHHHH
Confidence 455689999999999999999999999999999999854 999999665444333
No 321
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.13 E-value=1.6e-11 Score=96.27 Aligned_cols=51 Identities=25% Similarity=0.481 Sum_probs=46.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCChh
Q psy10362 291 PKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQELP 341 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~~ 341 (388)
++|||+|||.++|+++|+++|++||.|+.|+|.+++. ++++||||+|++..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 54 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES 54 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 5899999999999999999999999999999999864 78999999996654
No 322
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.13 E-value=6e-11 Score=96.24 Aligned_cols=58 Identities=9% Similarity=0.124 Sum_probs=49.3
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHH
Q psy10362 288 SSFPKVFLGGLPSNV------TETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKE 345 (388)
Q Consensus 288 ~~~~~lfV~nLp~~v------tee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~ 345 (388)
...++|||+|||..+ |+++|+++|++||.|+.|+|+++..+++|||||+|.+...+..
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~ 76 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVD 76 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHH
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHH
Confidence 345799999999999 7899999999999999999996556899999999966544333
No 323
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=2.3e-11 Score=101.59 Aligned_cols=59 Identities=20% Similarity=0.208 Sum_probs=47.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC--CCCeeEEEEEcCChhhHHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR--TIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~--~~~rG~aFV~F~~~~~~~~a 346 (388)
...++|||+|||.++|+++|+++|+.||.|+.+.++.+. .+++|||||+|++...++.|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~A 83 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAA 83 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHH
Confidence 455899999999999999999999999999885555443 37899999999665444433
No 324
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.12 E-value=4.8e-11 Score=106.34 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=49.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCeeEEEEEcCChhhHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT-IRAGITRVPTQELPVQK 344 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~~~~ 344 (388)
...++|||+||+.++|+++|+++|++||.|+.|+|+.++. ++++||||+|++...++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~ 143 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADAL 143 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHH
Confidence 4457999999999999999999999999999999999874 68999999996654333
No 325
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.12 E-value=1.9e-10 Score=97.33 Aligned_cols=55 Identities=18% Similarity=0.310 Sum_probs=48.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCCh
Q psy10362 286 KNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQEL 340 (388)
Q Consensus 286 ~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~~ 340 (388)
.....++|||+|||.++|+++|+++|++||.|+.|+|++++. ++++||||+|++.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 115 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELA 115 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCH
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCH
Confidence 345668999999999999999999999999999999998854 7899999999554
No 326
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.11 E-value=5.1e-11 Score=110.45 Aligned_cols=59 Identities=19% Similarity=0.279 Sum_probs=50.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEEecCCC--CCeeEEEEEcCChhhHHHHH
Q psy10362 289 SFPKVFLGGLPSNVTETDLRTFFNRYG--KVMEVVIMSPRT--IRAGITRVPTQELPVQKEAT 347 (388)
Q Consensus 289 ~~~~lfV~nLp~~vtee~L~~~F~~~G--~I~~v~v~~d~~--~~rG~aFV~F~~~~~~~~a~ 347 (388)
..++|||+||+.++|+++|+++|++|| .|+.|+|++|+. ++|+||||+|++...++.|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai 129 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLM 129 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 457899999999999999999999999 999999999963 78999999997765554443
No 327
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.11 E-value=3.5e-10 Score=95.01 Aligned_cols=86 Identities=21% Similarity=0.193 Sum_probs=60.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeE-EEEEcCChhhHHHHHHHHHHHhhcc------ccceec
Q psy10362 291 PKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGI-TRVPTQELPVQKEATAVQQVLRRSS------TTKVQA 363 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~-aFV~F~~~~~~~~a~~a~~aL~~~~------~~~i~~ 363 (388)
..|||+||+..+|+++|+++|++||.|++|+|+.. .|| |||+|++. +.|..|+++|.... .++|..
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~---~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESV---LCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSH---HHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCH---HHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 45789999999999999999999999999999752 386 99999665 44555555665543 345555
Q ss_pred cCCCccCCCCCCCCCCCCceeeec
Q psy10362 364 PFGATTLSPPNLTTPTGECRTFTL 387 (388)
Q Consensus 364 ~~~~~~~~pP~~~~~~~~~r~ft~ 387 (388)
++.+.. .......++|-||-
T Consensus 99 Ak~~~l----~v~~n~~~srDyt~ 118 (124)
T 2e5i_A 99 ARPTRL----NVIRNDNDSWDYTK 118 (124)
T ss_dssp CSCSCC----CCSSCSSSEEESSC
T ss_pred ecCCcc----eeecCCCCCCCCCC
Confidence 544432 22334556777763
No 328
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=4.1e-11 Score=93.76 Aligned_cols=53 Identities=34% Similarity=0.562 Sum_probs=47.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQ 343 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~ 343 (388)
...++|||+|||.++|+++|+++|++||.|++|+|+++ +++||||+|++..++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a 55 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIA 55 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHH
Confidence 34589999999999999999999999999999999875 789999999776544
No 329
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=1.8e-10 Score=91.76 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=45.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQ 343 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~ 343 (388)
...++|||+|||.++|+++|+++|++||.|+ ++++.+ ++++||||+|.+...+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~--~~~g~afV~f~~~~~a 69 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ--GPRRRAFLHYPDSAAA 69 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE--TTTTEEEEECSSHHHH
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC--CCCcEEEEEECCHHHH
Confidence 4467999999999999999999999999997 777765 7889999999655433
No 330
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=1.3e-10 Score=91.55 Aligned_cols=54 Identities=26% Similarity=0.387 Sum_probs=45.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
....++|||+|||.++|+++|+++|++||.|+.|+|+++ ||||+|++..+++.|
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~------~afV~f~~~~~a~~A 60 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD------YAFVHMERAEDAVEA 60 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS------EEEEEESCHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC------EEEEEECCHHHHHHH
Confidence 345689999999999999999999999999999999854 999999665443333
No 331
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=1.9e-10 Score=89.00 Aligned_cols=52 Identities=23% Similarity=0.540 Sum_probs=45.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChh
Q psy10362 286 KNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELP 341 (388)
Q Consensus 286 ~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~ 341 (388)
.....++|||+|||.++|+++|+++|++||.|+.|++++ +++||||+|++..
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~----~kg~afV~f~~~~ 59 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ----RQQCAFIQFATRQ 59 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHH
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC----CCCEEEEEECCHH
Confidence 345568999999999999999999999999999999996 4799999995543
No 332
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=5e-10 Score=88.67 Aligned_cols=51 Identities=24% Similarity=0.459 Sum_probs=42.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChh
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELP 341 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~ 341 (388)
...++|||+|||.++|+++|+++|++||.|++| +.++.+.+ ||||+|.+..
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~-~afV~f~~~~ 56 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV-FAIVEMGDVG 56 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC-EEEEEESSHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc-EEEEEECCHH
Confidence 445799999999999999999999999999987 44444444 9999995543
No 333
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=3.8e-10 Score=90.15 Aligned_cols=52 Identities=19% Similarity=0.141 Sum_probs=44.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcC--CCeeEEEEecCCCCCeeEEEEEcCChhhH
Q psy10362 286 KNSSFPKVFLGGLPSNVTETDLRTFFNRY--GKVMEVVIMSPRTIRAGITRVPTQELPVQ 343 (388)
Q Consensus 286 ~~~~~~~lfV~nLp~~vtee~L~~~F~~~--G~I~~v~v~~d~~~~rG~aFV~F~~~~~~ 343 (388)
.....++|||+|||.++|+++|+++|++| |.|+.|++. ++||||+|.+...+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~------~g~afV~f~~~~~A 64 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI------RDYAFVHFSNREDA 64 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC------SSEEEEEESSHHHH
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe------CCeEEEEeCCHHHH
Confidence 34566899999999999999999999999 999999876 56999999555433
No 334
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=1.4e-10 Score=92.92 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=43.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC-CCCeeEEEEEcCChh
Q psy10362 286 KNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR-TIRAGITRVPTQELP 341 (388)
Q Consensus 286 ~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~-~~~rG~aFV~F~~~~ 341 (388)
.....++|||+|||.++|+++|+++|++||.| +|+.+. .++++||||+|++..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~ 64 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFE 64 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHH
Confidence 34556899999999999999999999999987 556553 478999999995543
No 335
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.08 E-value=2.3e-11 Score=97.59 Aligned_cols=57 Identities=11% Similarity=0.094 Sum_probs=46.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC--CCCeeEEEEEcCChhhHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR--TIRAGITRVPTQELPVQKE 345 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~--~~~rG~aFV~F~~~~~~~~ 345 (388)
...++|||+|||.++|+++|+++|++||.|.. +++.++ .++++||||+|.+...++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~ 73 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEK 73 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHH
Confidence 34579999999999999999999999999988 556554 3789999999966543333
No 336
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.08 E-value=8.5e-11 Score=96.89 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=44.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEecCCCCCeeEEEEEcCChh
Q psy10362 289 SFPKVFLGGLPSNVTETDLRTFFNRYG-KVMEVVIMSPRTIRAGITRVPTQELP 341 (388)
Q Consensus 289 ~~~~lfV~nLp~~vtee~L~~~F~~~G-~I~~v~v~~d~~~~rG~aFV~F~~~~ 341 (388)
...+|||+|||.++|+++|+++|++|| .|+.|+|..+ +++|||||+|++.+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~--~~rGfaFV~F~~~e 78 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR--DFDGTGALEFPSEE 78 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC--SSSCCEEEEESSHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC--CCCCEEEEEECCHH
Confidence 347999999999999999999999999 8999998754 58999999995543
No 337
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.08 E-value=2.5e-10 Score=91.97 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=45.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
..+.++|||+|||.++|+++|+++|++||.|+.|+|++ +||||+|++.+.++.|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~------~~afV~f~~~~~a~~A 61 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK------DYAFIHFDERDGAVKA 61 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC------CEEEEEeCCHHHHHHH
Confidence 34568999999999999999999999999999999984 4999999665444443
No 338
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.07 E-value=1.1e-10 Score=96.48 Aligned_cols=59 Identities=22% Similarity=0.235 Sum_probs=47.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhh
Q psy10362 289 SFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRR 355 (388)
Q Consensus 289 ~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~ 355 (388)
..++|||+|||.++|+++|+++|++||.|+.|+|+.| +||||+|++.+ .|+.|++.|..
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~---~a~~Ai~~l~g 73 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKE---DMTYAVRKLDN 73 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHH---HHHHHHHHHTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHH---HHHHHHHHhCC
Confidence 4579999999999999999999999999999999976 99999995543 34444444444
No 339
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.07 E-value=7.3e-11 Score=106.56 Aligned_cols=96 Identities=15% Similarity=0.240 Sum_probs=65.7
Q ss_pred ChHhHHHHHHhC---CCCCCCCCCCCCCCCCCCCCCC----CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEe
Q psy10362 251 DPNNVGVVIQNC---PHTLDGRTIDPKPCNPRTLQKP----KKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323 (388)
Q Consensus 251 ~~~~A~~Ai~~~---~~~l~Gr~i~v~~a~~~~~~~~----~~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~ 323 (388)
+.+.+..|++.. ..++......|+.......... ......++|||+|||.++|+++|+++|++||.|..|+|.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 667777788753 2234444444443311110000 011234799999999999999999999999999999999
Q ss_pred cCCC-CCeeEEEEEcCChhhHHHH
Q psy10362 324 SPRT-IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 324 ~d~~-~~rG~aFV~F~~~~~~~~a 346 (388)
++.. +++|||||+|++..++..|
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A 166 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKF 166 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHH
T ss_pred ECCCCCcccEEEEEECCHHHHHHH
Confidence 8865 6899999999665544443
No 340
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.07 E-value=7.4e-11 Score=92.88 Aligned_cols=59 Identities=20% Similarity=0.218 Sum_probs=48.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhh
Q psy10362 290 FPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRR 355 (388)
Q Consensus 290 ~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~ 355 (388)
..-|||+||++.+||++|+++|.+||+|+++++.. +||||||+|.+.+ .|+.|+++|+.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~---eA~~Ai~~Ln~ 65 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTRE---EANKAQMALNN 65 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHH---HHHHHHHHHTT
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHH---HHHHHHHHhcC
Confidence 35799999999999999999999999999999984 7999999996654 34444445543
No 341
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.07 E-value=2.2e-10 Score=93.57 Aligned_cols=53 Identities=26% Similarity=0.448 Sum_probs=45.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHH
Q psy10362 286 KNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQK 344 (388)
Q Consensus 286 ~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~ 344 (388)
.....++|||+|||.++|+++|+++|++||.|+.|+|+ ++||||+|.+..+++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~ 79 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAA 79 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHH
Confidence 34566899999999999999999999999999999998 789999996554333
No 342
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.06 E-value=2.2e-10 Score=93.99 Aligned_cols=57 Identities=16% Similarity=0.329 Sum_probs=48.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKE 345 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~ 345 (388)
...++|||+|||.++|+++|+++|++||.|+.|+|+.+. ++++||||+|.+..++..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~~~g~afV~f~~~~~A~~ 62 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP-ETRGTAYVVYEDIFDAKN 62 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST-TTTTCEEEEESSHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC-CCCcEEEEEECCHHHHHH
Confidence 345799999999999999999999999999999999764 559999999966544333
No 343
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.63 E-value=1.8e-11 Score=100.94 Aligned_cols=60 Identities=25% Similarity=0.391 Sum_probs=51.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEEecCCC--CCeeEEEEEcCChhhHHHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVME--------VVIMSPRT--IRAGITRVPTQELPVQKEAT 347 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~--------v~v~~d~~--~~rG~aFV~F~~~~~~~~a~ 347 (388)
.+.++|||+|||.++|+++|+++|++||.|+. |+|+.|+. ++++||||+|.+..+++.|.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai 74 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAI 74 (116)
Confidence 45679999999999999999999999999999 88998854 78999999996655554443
No 344
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.04 E-value=1.9e-10 Score=94.38 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=48.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhh
Q psy10362 289 SFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRR 355 (388)
Q Consensus 289 ~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~ 355 (388)
..++|||+|||.++|+++|+++|++||.|+.|+|.+ .++||||+|.+...+ +.|.+.|..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~----~~g~afV~f~~~~~A---~~Ai~~l~g 68 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE----GGITAIVEFLEPLEA---RKAFRHLAY 68 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS----SSSCEEEEESCHHHH---HHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEeCCHHHH---HHHHHHhCC
Confidence 346999999999999999999999999999999883 678999999665443 344444443
No 345
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.04 E-value=3.1e-10 Score=95.38 Aligned_cols=49 Identities=8% Similarity=0.303 Sum_probs=46.1
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCeeEEEEEcCC
Q psy10362 291 PKVFLGGL----PSNVTETDLRTFFNRYGKVMEVVIMSPRT--IRAGITRVPTQE 339 (388)
Q Consensus 291 ~~lfV~nL----p~~vtee~L~~~F~~~G~I~~v~v~~d~~--~~rG~aFV~F~~ 339 (388)
++|||+|| ++.+++++|+++|+.||+|.+|+++.|+. +++||+||+|.+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECC
Confidence 58999999 99999999999999999999999999986 799999999975
No 346
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.04 E-value=6.7e-10 Score=93.96 Aligned_cols=89 Identities=15% Similarity=0.237 Sum_probs=63.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeE-EEEEcCChhhHHHHHHHHHHHhhcc------ccce
Q psy10362 289 SFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGI-TRVPTQELPVQKEATAVQQVLRRSS------TTKV 361 (388)
Q Consensus 289 ~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~-aFV~F~~~~~~~~a~~a~~aL~~~~------~~~i 361 (388)
+...|||+||+..+|+++|+++|++||.|++|+|+.+ +++| |||+|++. +.|+.|+++|.+.. .++|
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~---~~gfqAFVef~~~---~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADP---VSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE---TTEEEEEEEESCH---HHHHHHHHHHTTCEEETTEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC---CCCcEEEEEECCH---HHHHHHHHHcCCCeecCCCcEEEE
Confidence 3357889999999999999999999999999999863 4677 99999665 44555556666543 3556
Q ss_pred eccCCCccCCCCCCCCCCCCceeeec
Q psy10362 362 QAPFGATTLSPPNLTTPTGECRTFTL 387 (388)
Q Consensus 362 ~~~~~~~~~~pP~~~~~~~~~r~ft~ 387 (388)
+.++.+.. ........+|-||-
T Consensus 101 ~~ak~~~l----~v~~n~~~srDyt~ 122 (130)
T 3zzy_A 101 DFSKLTSL----NVKYNNDKSRDYTR 122 (130)
T ss_dssp EECSCSSC----CCCCCSSSEEETTC
T ss_pred EecCCCce----eEEecCCCcccCCC
Confidence 55544322 23344566777764
No 347
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.04 E-value=3.9e-10 Score=90.19 Aligned_cols=54 Identities=26% Similarity=0.495 Sum_probs=45.7
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 287 NSSFPKVFLGGLPS-NVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 287 ~~~~~~lfV~nLp~-~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
....++|||+||+. ++|+++|+++|++||.|+.|+|. ++||||+|++..+++.|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A 73 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDA 73 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------SSEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHH
Confidence 45568999999998 99999999999999999999983 79999999665444333
No 348
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.03 E-value=2.2e-10 Score=91.15 Aligned_cols=53 Identities=26% Similarity=0.514 Sum_probs=44.9
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 288 SSFPKVFLGGLPS-NVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 288 ~~~~~lfV~nLp~-~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
.+.++|||+|||. ++|+++|+++|++||.|+.|+|. ++||||+|++...++.|
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A 61 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDA 61 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHH
Confidence 4567999999998 99999999999999999999995 68999999665444433
No 349
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=7.7e-10 Score=90.62 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=45.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCe----eEEEEecCCCCCeeEEEEEcCChhhHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKV----MEVVIMSPRTIRAGITRVPTQELPVQK 344 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I----~~v~v~~d~~~~rG~aFV~F~~~~~~~ 344 (388)
...++|||+|||.++|+++|+++|++||.| ..+++. ..++++||||+|.+..+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~ 81 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAW 81 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCHHHHH
Confidence 456899999999999999999999999999 455555 4478999999996554333
No 350
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=4.8e-10 Score=89.87 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=44.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC--CCCeeEEEEEcCChhhH
Q psy10362 286 KNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR--TIRAGITRVPTQELPVQ 343 (388)
Q Consensus 286 ~~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~--~~~rG~aFV~F~~~~~~ 343 (388)
.....++|||+|||.++|+++|+++|+.| ..|+++.++ .++++||||+|++...+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A 67 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDA 67 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHH
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHH
Confidence 34566899999999999999999999977 367777765 36899999999655433
No 351
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=5.3e-10 Score=88.63 Aligned_cols=54 Identities=13% Similarity=0.188 Sum_probs=44.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEE-EecCCCCCeeEEEEEcCChhhH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVV-IMSPRTIRAGITRVPTQELPVQ 343 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~-v~~d~~~~rG~aFV~F~~~~~~ 343 (388)
...++|||+|||.++|+++|+++|++||.|+.|+ |+.++...+ |||+|.+...+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~--afV~f~~~~~a 67 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV--VNVTYSSKDQA 67 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE--EEEEESSHHHH
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE--EEEEECCHHHH
Confidence 3457999999999999999999999999999995 887754433 99999555433
No 352
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.00 E-value=3.2e-10 Score=88.77 Aligned_cols=50 Identities=8% Similarity=0.111 Sum_probs=44.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhH
Q psy10362 289 SFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQ 343 (388)
Q Consensus 289 ~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~ 343 (388)
..++|||+|||.++|+++|+++|++| .|++|+|. ++++||||+|.+...+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a 53 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQA 53 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHH
Confidence 45789999999999999999999999 99999985 7899999999655433
No 353
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.00 E-value=6.9e-10 Score=93.57 Aligned_cols=57 Identities=11% Similarity=0.207 Sum_probs=46.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLR----TFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKE 345 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~----~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~ 345 (388)
.+.++|||+||+..+++++|+ ++|++||.|++|+|.++ .+++|||||+|++..+++.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~-~~~rG~aFV~F~~~~~A~~ 87 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS-DDNSGKAYIVFATQESAQA 87 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC-CSSCCCEEEEESSHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC-CCcCCEEEEEECCHHHHHH
Confidence 446799999999999999876 69999999999988643 4789999999966544333
No 354
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=2.6e-10 Score=89.98 Aligned_cols=54 Identities=26% Similarity=0.401 Sum_probs=43.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCC-eeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGK-VMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~-I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
...++|||+|||.++|+++|+++|++||. |..+.+. +++||||+|++...++.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A 60 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRA 60 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHH
Confidence 45689999999999999999999999999 6655553 579999999665544444
No 355
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=3.1e-10 Score=93.87 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=47.9
Q ss_pred CCCCeEEE--cCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhh
Q psy10362 288 SSFPKVFL--GGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRR 355 (388)
Q Consensus 288 ~~~~~lfV--~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~ 355 (388)
.+.++||| +||+.++|+++|+++|++||.|++|+|.. .|+||||+|++.+ .|+.|.+.|..
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~----~rgfaFV~f~~~~---~A~~Ai~~lnG 85 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTE---ESKRAYVTLNG 85 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT----TCSCEEEEESSHH---HHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHH---HHHHHHHHhCC
Confidence 34578999 77999999999999999999999998874 4799999995543 33334444444
No 356
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=1.6e-09 Score=86.14 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=43.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhH
Q psy10362 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQ 343 (388)
Q Consensus 287 ~~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~ 343 (388)
....++|||+|| ++|+++|+++|++||.|+.|+|. ++++||||+|++...+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~a 62 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESA 62 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE----TTTTEEEEEESSHHHH
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec----CCCCEEEEEECCHHHH
Confidence 345689999996 89999999999999999999995 6789999999655433
No 357
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.96 E-value=3e-10 Score=90.06 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=43.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChh
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELP 341 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~ 341 (388)
...++|||+|||.++|+++|+++|++||.|..+ ....++++||||+|.+..
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~ 64 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEA 64 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHH
Confidence 445799999999999999999999999988766 334578999999995543
No 358
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.94 E-value=6.8e-10 Score=86.16 Aligned_cols=48 Identities=25% Similarity=0.468 Sum_probs=42.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcC----C-------CeeEEEEecCCCCCeeEEEEEcCCh
Q psy10362 289 SFPKVFLGGLPSNVTETDLRTFFNRY----G-------KVMEVVIMSPRTIRAGITRVPTQEL 340 (388)
Q Consensus 289 ~~~~lfV~nLp~~vtee~L~~~F~~~----G-------~I~~v~v~~d~~~~rG~aFV~F~~~ 340 (388)
..++|||+|||.++|+++|+++|++| | .|.++++.++ ++||||+|.+.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~ 63 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSV 63 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCH
Confidence 45799999999999999999999999 8 8999999854 79999999444
No 359
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.92 E-value=3.6e-10 Score=89.64 Aligned_cols=57 Identities=14% Similarity=0.415 Sum_probs=47.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLR----TFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKE 345 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~----~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~ 345 (388)
.+.++|||+|||.++|+++|+ ++|++||.|+.|+|..+ .++++||||+|.+..+++.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~-~~~~g~afV~f~~~~~A~~ 66 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS-LKMRGQAFVIFKEVSSATN 66 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH-HHHTTCEEEEESSHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC-CCcCcEEEEEeCCHHHHHH
Confidence 456899999999999999999 99999999999998742 3578999999965543333
No 360
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.92 E-value=5.8e-10 Score=95.21 Aligned_cols=58 Identities=19% Similarity=0.264 Sum_probs=45.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEE--------EEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEV--------VIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v--------~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
...++|||+|||.++|+++|+++|++||.|..| ++. ...++++||||+|.+...+..|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~A 108 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKA 108 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHH
Confidence 445799999999999999999999999999874 222 2347999999999665444443
No 361
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.92 E-value=2e-09 Score=100.32 Aligned_cols=91 Identities=11% Similarity=0.107 Sum_probs=60.4
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCC---------CHHHHHHHhhcCCCeeEEEEecCCC
Q psy10362 257 VVIQNCPHTLDGRTIDPKPCNPRTLQKPKKNSSFPKVFLGGLPSNV---------TETDLRTFFNRYGKVMEVVIMSPRT 327 (388)
Q Consensus 257 ~Ai~~~~~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~v---------tee~L~~~F~~~G~I~~v~v~~d~~ 327 (388)
.+|..+.....||............ ........++|||+||+.++ ++++|+++|++||.|++|+|+.
T Consensus 102 ~~~~~~~~D~fGr~k~~~~~d~~~g-~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--- 177 (240)
T 3u1l_A 102 LALRTEVLDCFGREKFADYREDMGG-IGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--- 177 (240)
T ss_dssp HHHHCSSBCTTSSBCGGGTC----------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---
T ss_pred hcccccCcccccchhcccchhcccC-cCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---
Confidence 3444344556677654443322211 11234567899999999998 7999999999999999999994
Q ss_pred CCeeEEEEEcCChhhHHHHHHHHHHHhh
Q psy10362 328 IRAGITRVPTQELPVQKEATAVQQVLRR 355 (388)
Q Consensus 328 ~~rG~aFV~F~~~~~~~~a~~a~~aL~~ 355 (388)
+++||||+|.+..+++. |+++|..
T Consensus 178 -~kG~AFV~F~~~~~Ae~---A~~am~g 201 (240)
T 3u1l_A 178 -SKNCGFVKFKYQANAEF---AKEAMSN 201 (240)
T ss_dssp -GGTEEEEEESSHHHHHH---HHHHHTT
T ss_pred -CCCEEEEEeCCHHHHHH---HHHHhCC
Confidence 58999999966644444 4444443
No 362
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.83 E-value=1.1e-09 Score=90.63 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=53.5
Q ss_pred HHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCC
Q psy10362 214 AQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCN 277 (388)
Q Consensus 214 e~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~ 277 (388)
++||++.|++||.|++|+|.++. ++||+||+|.+.++|++||+. ++..|.||.|.|.++.
T Consensus 31 ~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp HHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 35889999999999999997653 589999999999999999997 9999999999988764
No 363
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.83 E-value=4.9e-09 Score=87.42 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=44.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
...++|||+|| ++|+++|+++|++||.|++|+|. ++++||||+|++..+++.|
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~A 89 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQA 89 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHH
Confidence 45689999996 69999999999999999999997 6789999999665444333
No 364
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=4.2e-09 Score=87.87 Aligned_cols=70 Identities=11% Similarity=0.025 Sum_probs=57.7
Q ss_pred CCCCCCCcccCCCc-CcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCC-hHhHHHHHHh---CCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYG-TYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFAD-PNNVGVVIQN---CPHTLDGRTID 272 (388)
Q Consensus 198 ~~~~~vfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~-~~~A~~Ai~~---~~~~l~Gr~i~ 272 (388)
+..+.|||+||+++ +++++|+++|++||+|..|.+.++.. .|||.|.+ +++|..|++. .+.+|.+..+.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 34477999999999 99999999999999999999999865 59999999 7899999985 23445554443
Q ss_pred C
Q psy10362 273 P 273 (388)
Q Consensus 273 v 273 (388)
+
T Consensus 90 ~ 90 (121)
T 1owx_A 90 W 90 (121)
T ss_dssp E
T ss_pred E
Confidence 3
No 365
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=2.5e-09 Score=84.27 Aligned_cols=74 Identities=22% Similarity=0.239 Sum_probs=62.4
Q ss_pred CCCCCCCcccCCC----cCcH----HHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCC
Q psy10362 198 PSAGKPPADYSAY----GTYA----QYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGR 269 (388)
Q Consensus 198 ~~~~~vfVgnLp~----~~te----~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr 269 (388)
|+..||+|.-++. ++-+ .+|.+.|++||+|..++|+.|+ +||+|.+.++|.+||+.++..+.||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCe
Confidence 4557888887762 3333 5789999999999999999984 8999999999999999899999999
Q ss_pred CCCCCCCCCC
Q psy10362 270 TIDPKPCNPR 279 (388)
Q Consensus 270 ~i~v~~a~~~ 279 (388)
.|+|+.+.+.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999887643
No 366
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.67 E-value=3.1e-08 Score=80.57 Aligned_cols=65 Identities=18% Similarity=0.124 Sum_probs=48.6
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHhhcCCCeeEEEEecCCC---CCeeEEEEEcCChhhHHHHHHHHHHHhh
Q psy10362 288 SSFPKVFLGGLPS-----NVTETDLRTFFNRYGKVMEVVIMSPRT---IRAGITRVPTQELPVQKEATAVQQVLRR 355 (388)
Q Consensus 288 ~~~~~lfV~nLp~-----~vtee~L~~~F~~~G~I~~v~v~~d~~---~~rG~aFV~F~~~~~~~~a~~a~~aL~~ 355 (388)
.+.++|+|.||.. +-++++|+++|++||.|++|+|++++. +++||+||+|++.. .|..|.+.|..
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~---~A~~Ai~~lnG 78 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVE---SAIKAVVDLNG 78 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHH---HHHHHHHHHTT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHH---HHHHHHHHHCC
Confidence 3457899999963 237899999999999999999998853 68999999995543 33444444443
No 367
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=6.4e-08 Score=79.15 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=42.3
Q ss_pred CCCCCCeEEEcCCCCCCC-----------HHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChh
Q psy10362 286 KNSSFPKVFLGGLPSNVT-----------ETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELP 341 (388)
Q Consensus 286 ~~~~~~~lfV~nLp~~vt-----------ee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~ 341 (388)
.....++|+|.||....+ +++|+++|++||.|+.|.| .|+ +++|||||+|.+..
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~-~~~G~afV~f~~~~ 75 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR-HPDGVASVSFRDPE 75 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT-CTTCEEEEECSCHH
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC-CCCEEEEEEECCHH
Confidence 345568999999954332 5899999999999999966 444 48999999995543
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.64 E-value=3.8e-08 Score=96.33 Aligned_cols=63 Identities=11% Similarity=0.146 Sum_probs=49.4
Q ss_pred CCCCeEEEcC--CCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhhcc
Q psy10362 288 SSFPKVFLGG--LPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRRSS 357 (388)
Q Consensus 288 ~~~~~lfV~n--Lp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~ 357 (388)
.+.++|||+| |+..+||++|+++|++||.|++|++.+ .|+||||+|++. +.|+.|.++|+...
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~---~~A~~Ai~~lnG~~ 80 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTT---EESKRAYVTLNGKE 80 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSH---HHHHHHHHHTTTCE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCH---HHHHHHHHHhCCCc
Confidence 4567999999 578999999999999999999988763 679999999555 34444555555543
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=2.7e-07 Score=74.37 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 300 SNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 300 ~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
..+|+++|+++|++||.|++|+|+. +++|||||+|++...++.|
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~---~~rGfaFVeF~~~~~A~~A 70 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS---KKPGTAVVEFATVKAAELA 70 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES---SSSSEEEEEESCHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc---CCCCEEEEEECCHHHHHHH
Confidence 5689999999999999999999983 7899999999666544443
No 370
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.59 E-value=9.6e-08 Score=75.92 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=46.0
Q ss_pred CCe-EEEcCCCCCCCHHH----HHHHhhcC-CCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhhc----ccc
Q psy10362 290 FPK-VFLGGLPSNVTETD----LRTFFNRY-GKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRRS----STT 359 (388)
Q Consensus 290 ~~~-lfV~nLp~~vtee~----L~~~F~~~-G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~~----~~~ 359 (388)
..+ |||.|||..+++++ |+++|++| |.|.+|. .|+|||+|.+.+++ ..|++.|... +.+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--------gG~AfV~F~~~esA---~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--------GCSAILRFINQDSA---ERAQKRMENEDVFGNRI 76 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--------TTCEEEEESSHHHH---HHHHHHHTTCCSSSSCC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--------cCEEEEEECCHHHH---HHHHHHhcCCccCCceE
Confidence 445 99999999999988 55899999 5999981 29999999665443 3444444443 355
Q ss_pred ceeccC
Q psy10362 360 KVQAPF 365 (388)
Q Consensus 360 ~i~~~~ 365 (388)
+|+.++
T Consensus 77 ~v~~A~ 82 (96)
T 2diu_A 77 IVSFTP 82 (96)
T ss_dssp EEESSC
T ss_pred EEEecC
Confidence 555443
No 371
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=1.4e-08 Score=80.40 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=61.2
Q ss_pred CCCCCCCCcccCCCc-----C-cH---HHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCC
Q psy10362 197 GPSAGKPPADYSAYG-----T-YA---QYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLD 267 (388)
Q Consensus 197 ~~~~~~vfVgnLp~~-----~-te---~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~ 267 (388)
.|+..||+|.-++.. + .+ .+|.+.|++||+|..++++.|+ +||+|.+.++|.+||+.++.++.
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~ 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVK 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEET
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeC
Confidence 355678999988742 2 32 4688999999999999999984 99999999999999998999999
Q ss_pred CCCCCCCCC
Q psy10362 268 GRTIDPKPC 276 (388)
Q Consensus 268 Gr~i~v~~a 276 (388)
+|.|+|+.-
T Consensus 84 Gr~L~V~~k 92 (95)
T 1ufw_A 84 GRAVKISGP 92 (95)
T ss_dssp TEEEEEECC
T ss_pred CeEEEEecc
Confidence 999998764
No 372
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.55 E-value=1.1e-07 Score=86.75 Aligned_cols=67 Identities=15% Similarity=0.170 Sum_probs=59.0
Q ss_pred cCcHHHHHHHHhccCceeEEEEeecC----CCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCCC
Q psy10362 211 GTYAQYQQRYFSRYGEVIDCVVMKNN----ETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPCN 277 (388)
Q Consensus 211 ~~te~~L~~~F~~~G~I~~v~i~~dk----~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a~ 277 (388)
+-.+++|++.|++||.|.+++|.++. .+++++|++||+|.+.++|++||+. ++..+.||.|.+.+..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 44567899999999999999998654 4458999999999999999999998 9999999999988764
No 373
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.47 E-value=3.4e-08 Score=80.11 Aligned_cols=47 Identities=21% Similarity=0.349 Sum_probs=37.9
Q ss_pred EcCCCCCCCHHHHHHHh------------hcCCCeeEEEEecCCC-CCeeEEEEEcCChh
Q psy10362 295 LGGLPSNVTETDLRTFF------------NRYGKVMEVVIMSPRT-IRAGITRVPTQELP 341 (388)
Q Consensus 295 V~nLp~~vtee~L~~~F------------~~~G~I~~v~v~~d~~-~~rG~aFV~F~~~~ 341 (388)
+.+|+..+++++|+++| ++||.|++|+|++++. +++||+||+|++..
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~ 79 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREE 79 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHH
Confidence 55677778887777666 9999999999998864 78999999995543
No 374
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.35 E-value=3.9e-07 Score=73.95 Aligned_cols=64 Identities=20% Similarity=0.219 Sum_probs=46.5
Q ss_pred CCCeEEEcCC--CCCCC--------HHHHHHHhhcCCCeeEEEEecCCC----CCeeEEEEEcCChhhHHHHHHHHHHHh
Q psy10362 289 SFPKVFLGGL--PSNVT--------ETDLRTFFNRYGKVMEVVIMSPRT----IRAGITRVPTQELPVQKEATAVQQVLR 354 (388)
Q Consensus 289 ~~~~lfV~nL--p~~vt--------ee~L~~~F~~~G~I~~v~v~~d~~----~~rG~aFV~F~~~~~~~~a~~a~~aL~ 354 (388)
+.+.|.|.|+ +.++. +++|+++|++||.|++|+|.+++. +++|++||+|++. +.|..|.++|.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~---~~A~~Ai~~ln 80 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSV---FDCQKAMQGLT 80 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSH---HHHHHHHHHHT
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCH---HHHHHHHHHhC
Confidence 4567888888 33443 369999999999999999998864 4789999999554 33334444444
Q ss_pred h
Q psy10362 355 R 355 (388)
Q Consensus 355 ~ 355 (388)
+
T Consensus 81 G 81 (105)
T 3v4m_A 81 G 81 (105)
T ss_dssp T
T ss_pred C
Confidence 3
No 375
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=1.4e-06 Score=69.79 Aligned_cols=87 Identities=22% Similarity=0.372 Sum_probs=73.1
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhcc-----CceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRY-----GEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPK 274 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~-----G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i~v~ 274 (388)
.++|.|.|||.+++++.|.-+|++- |+|.+++...+ -|+|+|.+.+.|++.|+...|.|++..|.|.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~--------~AvItF~d~~va~rVL~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGC--------GGVLTFREPADAERVLAQADHELHGAQLSLR 79 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETT--------EEEEEESSHHHHHHHHTCSCCBSSSSBCEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCC--------cEEEEEcChHHHHHHhcCCcceecCeEEEEE
Confidence 4789999999999999999999862 68888887552 6899999999999999988899999999998
Q ss_pred CCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q psy10362 275 PCNPRTLQKPKKNSSFPKVFLGGLPSNVT 303 (388)
Q Consensus 275 ~a~~~~~~~~~~~~~~~~lfV~nLp~~vt 303 (388)
+..++. ..+|++.+|++..+
T Consensus 80 P~~~~~---------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 80 PAPPRA---------PARLLLQGLPPGTS 99 (104)
T ss_dssp ECCCCC---------CCCCCCCSCCCCCC
T ss_pred cCCCCC---------cceEeeecCCCCCC
Confidence 765543 24788899988764
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.30 E-value=1e-06 Score=73.32 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=43.1
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCC
Q psy10362 288 SSFPKVFLGGLPSN-VTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQE 339 (388)
Q Consensus 288 ~~~~~lfV~nLp~~-vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~ 339 (388)
.....|+|+||+.+ +++++|+++|+.||.|.+|.+.++.. .|||+|.+
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~----tgfVrf~~ 64 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK----EGIILFKE 64 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS----EEEEEESS
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC----EEEEEECC
Confidence 44578999999999 99999999999999999999998754 49999966
No 377
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.23 E-value=1.1e-06 Score=72.82 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=46.4
Q ss_pred CCCeEEEcCCCC--CC---CHHHHHHHhhcCCCeeEEEEecCCC------CCeeEEEEEcCChhhHHHHHHHHHHHhh
Q psy10362 289 SFPKVFLGGLPS--NV---TETDLRTFFNRYGKVMEVVIMSPRT------IRAGITRVPTQELPVQKEATAVQQVLRR 355 (388)
Q Consensus 289 ~~~~lfV~nLp~--~v---tee~L~~~F~~~G~I~~v~v~~d~~------~~rG~aFV~F~~~~~~~~a~~a~~aL~~ 355 (388)
+.++|+|.|+-. ++ .+++|++.|++||.|++|+|++++. +++|++||+|.+. +.|..|.++|.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~---e~A~~Ai~~LnG 93 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIA---SETHKAIQALNG 93 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSH---HHHHHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCH---HHHHHHHHHHCC
Confidence 456888888842 22 3689999999999999999998853 4679999999554 334444444443
No 378
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=97.91 E-value=1.8e-05 Score=65.02 Aligned_cols=62 Identities=16% Similarity=0.133 Sum_probs=43.1
Q ss_pred CCCeEEEcCCCCCC----------CHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhh
Q psy10362 289 SFPKVFLGGLPSNV----------TETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRR 355 (388)
Q Consensus 289 ~~~~lfV~nLp~~v----------tee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~ 355 (388)
+.+.|.|.|+=... .+++|++.|++||.|++|+|.++ .++|++||+|.+. +.|..|.+.|.+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~--~~~G~~fV~f~~~---e~A~~Ai~~lnG 77 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN--SAQGNVYVKCPSI---AAAIAAVNALHG 77 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT--CTTCCEEEECSSH---HHHHHHHHHHTT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC--CCcEEEEEEECCH---HHHHHHHHHhCC
Confidence 34567777764322 23688999999999999999765 4699999999554 344444444443
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.78 E-value=1.8e-05 Score=64.12 Aligned_cols=71 Identities=6% Similarity=0.010 Sum_probs=62.8
Q ss_pred CCCCCCCcccCCCcCcHHHHHHHHhcc-----CceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHH-hCCCCCCCCCC
Q psy10362 198 PSAGKPPADYSAYGTYAQYQQRYFSRY-----GEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQ-NCPHTLDGRTI 271 (388)
Q Consensus 198 ~~~~~vfVgnLp~~~te~~L~~~F~~~-----G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~-~~~~~l~Gr~i 271 (388)
++.++|-+-+||..+++..|+.|++.+ +.|++|.+..|.. =|+|+|.|...|-+|.- .++.+|.+|+|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 447899999999999999999999999 9999999999853 69999999999998864 48899999888
Q ss_pred CCC
Q psy10362 272 DPK 274 (388)
Q Consensus 272 ~v~ 274 (388)
++.
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 764
No 380
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.77 E-value=2.4e-05 Score=61.49 Aligned_cols=75 Identities=20% Similarity=0.189 Sum_probs=51.2
Q ss_pred CCCCeEEEcCCCC----CCCH----HHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhhcccc
Q psy10362 288 SSFPKVFLGGLPS----NVTE----TDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRRSSTT 359 (388)
Q Consensus 288 ~~~~~lfV~nLp~----~vte----e~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~~~ 359 (388)
.++-||+|.-++. .+-+ .+|.+.|+.||.|..++|+.|+ +||+|++. +.|++||. ++..
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~------~fVtF~d~------~sAlaAi~-mnG~ 71 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK------MWVTFLEG------SSALNVLS-LNGK 71 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS------EEEEESSH------HHHHHGGG-GTTC
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC------EEEEECCh------HHHHHHHh-cCCe
Confidence 3456888877762 3333 6788999999999999999886 89999553 44555555 5555
Q ss_pred ceeccCCCccCCCCCC
Q psy10362 360 KVQAPFGATTLSPPNL 375 (388)
Q Consensus 360 ~i~~~~~~~~~~pP~~ 375 (388)
++.-+.-+..+..|.+
T Consensus 72 ~v~Gr~LkV~lkt~dW 87 (91)
T 2dnr_A 72 ELLNRTITIALKSPSG 87 (91)
T ss_dssp EETTEEEEEEECCCSS
T ss_pred EeCCeEEEEEeCCCCc
Confidence 5555555555555544
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.52 E-value=5.3e-05 Score=59.89 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=40.5
Q ss_pred CCCCeEEEcCCCCC-----CCH----HHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 288 SSFPKVFLGGLPSN-----VTE----TDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 288 ~~~~~lfV~nLp~~-----vte----e~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
.++-||+|.-++.+ +-+ .+|.+.|+.||.|..++|+.|+ +||+|++..++.+|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~A 74 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSV 74 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHH
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHH
Confidence 45679999888743 222 5688999999999999999886 99999666444433
No 382
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=96.97 E-value=0.00064 Score=61.58 Aligned_cols=51 Identities=18% Similarity=0.109 Sum_probs=38.0
Q ss_pred CCHHHHHHHhhcCCCeeEEEEecCCC------CCeeEEEEEcCChhhHHHHHHHHHHHhh
Q psy10362 302 VTETDLRTFFNRYGKVMEVVIMSPRT------IRAGITRVPTQELPVQKEATAVQQVLRR 355 (388)
Q Consensus 302 vtee~L~~~F~~~G~I~~v~v~~d~~------~~rG~aFV~F~~~~~~~~a~~a~~aL~~ 355 (388)
-.+++|++.|++||.|+.|+|+++.. +++|++||+|.+. +.|..|.++|.+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~---~~a~~a~~~l~g 197 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIA---SETHKAIQALNG 197 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSH---HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCH---HHHHHHHHHhcC
Confidence 46689999999999999999986532 6899999999554 333444444444
No 383
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.56 E-value=0.0064 Score=48.11 Aligned_cols=54 Identities=15% Similarity=0.227 Sum_probs=44.3
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN 261 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~ 261 (388)
...||+=.+|.++...||.++|+.||.| .|+.+-| | .|||.|.+++.|..|+..
T Consensus 15 r~HVf~l~FP~ewKt~DI~~lFs~fggv-~I~WidD--T-----sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 15 RDHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CCSEEEEECCTTCCHHHHHHHHTTTCSC-CCEEEET--T-----EEEEECSCHHHHHHHHHH
T ss_pred CCeEEEEeCChhhhhHHHHHHhhccCCE-EEEEEcC--C-----eEEEEecCHHHHHHHHHh
Confidence 3445444999999999999999999955 5666666 2 799999999999999984
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.25 E-value=0.0061 Score=48.87 Aligned_cols=75 Identities=9% Similarity=-0.002 Sum_probs=60.2
Q ss_pred CCCCCcccCCCcC-cH----HHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCC
Q psy10362 200 AGKPPADYSAYGT-YA----QYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDP 273 (388)
Q Consensus 200 ~~~vfVgnLp~~~-te----~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v 273 (388)
..+|+|.||+.++ +. +.++++|.+|.++.....++.= .-..|.|.++++|.+|-.. ++..+.|++|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4679999998875 33 4568899999999887777641 1468999999999999887 888999999999
Q ss_pred CCCCCCC
Q psy10362 274 KPCNPRT 280 (388)
Q Consensus 274 ~~a~~~~ 280 (388)
-++.+..
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 8887443
No 385
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.25 E-value=0.0017 Score=65.65 Aligned_cols=56 Identities=11% Similarity=0.202 Sum_probs=43.4
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN 261 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~ 261 (388)
.|.|||. .+..+++.+|.++|++||+|.++.+.+++. =|+.|+|.+.+++.+++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhc
Confidence 4689997 799999999999999999999998887643 4999999999999988764
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.22 E-value=0.009 Score=46.85 Aligned_cols=69 Identities=7% Similarity=-0.059 Sum_probs=53.0
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCC--ceeEEEEEeCChHhHHHHHHh-CCCCCCCC
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGR--SRGFGFVTFADPNNVGVVIQN-CPHTLDGR 269 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~--skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr 269 (388)
.+|.|.+||+.+||+++.+.+..+.++.....+..+.+.+ .-.-|+|.|.+.+++....+. +++.+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 4688999999999999999999888776665555443322 234699999999999998886 66665544
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.19 E-value=0.0067 Score=49.89 Aligned_cols=72 Identities=14% Similarity=0.199 Sum_probs=55.3
Q ss_pred CCCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCC-CCCCCCCCC
Q psy10362 199 SAGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDG-RTIDPKPCN 277 (388)
Q Consensus 199 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~G-r~i~v~~a~ 277 (388)
+.+-|-|-+.|... -+.|.+.|++||.|++...... .-.-.|.|.++.+|++||.+++..|.+ ..|-|++..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 34567778888774 5678889999999998876211 238899999999999999998888875 456666654
No 388
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.019 Score=46.38 Aligned_cols=55 Identities=9% Similarity=0.068 Sum_probs=45.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcC-----CCeeEEEEecCCCCCeeEEEEEcCChhhHHHH
Q psy10362 288 SSFPKVFLGGLPSNVTETDLRTFFNRY-----GKVMEVVIMSPRTIRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 288 ~~~~~lfV~nLp~~vtee~L~~~F~~~-----G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a 346 (388)
...++|-+-+||..|++..|+.+.+++ +.|+.+.++.|. +=|+|+|.|...+..|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH----~GAivef~d~~~AgKa 78 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF----NGAIIIFRDSKFAAKM 78 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT----TEEEEECSCHHHHHHH
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC----CceEEEEccchhhHHH
Confidence 345789999999999999999999999 999999999875 4589999666544443
No 389
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.89 E-value=0.0073 Score=47.91 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=42.7
Q ss_pred CCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh
Q psy10362 203 PPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN 261 (388)
Q Consensus 203 vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~ 261 (388)
++| .+|.++...||.++|+.||.| .|+.+-| | .|||.|.+++.|..|+..
T Consensus 9 ~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD--T-----sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 9 LHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET--T-----EEEEEEEEECHHHHHHHH
T ss_pred EEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC--C-----eEEEEecCHHHHHHHHHh
Confidence 445 999999999999999999944 5666666 3 799999999999999985
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.99 E-value=0.092 Score=41.49 Aligned_cols=63 Identities=13% Similarity=0.262 Sum_probs=43.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhhcccccee
Q psy10362 291 PKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRRSSTTKVQ 362 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~~~~i~ 362 (388)
.+||+-..|+++...||.++|+.||.| .|+.+.| .-|||.|.+.+ .|.+|++++......+|+
T Consensus 16 ~HVf~l~FP~ewKt~DI~~lFs~fggv-~I~WidD-----TsAlvvf~~~~---~a~~al~~i~k~~~y~i~ 78 (100)
T 1whv_A 16 DHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD-----TSAFVSLSQPE---QVQIAVNTSKYAESYRIQ 78 (100)
T ss_dssp CSEEEEECCTTCCHHHHHHHHTTTCSC-CCEEEET-----TEEEEECSCHH---HHHHHHHHHHHCCSSEEE
T ss_pred CeEEEEeCChhhhhHHHHHHhhccCCE-EEEEEcC-----CeEEEEecCHH---HHHHHHHhcccCCceEEE
Confidence 345555999999999999999999844 4666655 35999996654 445555656554444444
No 391
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.50 E-value=0.085 Score=42.08 Aligned_cols=55 Identities=22% Similarity=0.277 Sum_probs=43.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcC-----CCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhh
Q psy10362 289 SFPKVFLGGLPSNVTETDLRTFFNRY-----GKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRR 355 (388)
Q Consensus 289 ~~~~lfV~nLp~~vtee~L~~~F~~~-----G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~ 355 (388)
..++|.|.|||+++++|.|.-+|+.- |.|+.++.+. .-|+|+| .....++.+|.+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF------~d~~va~rVL~k 66 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTF------REPADAERVLAQ 66 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEE------SSHHHHHHHHTC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEE------cChHHHHHHhcC
Confidence 34789999999999999999999962 6788888874 4589999 444555666666
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.11 E-value=0.14 Score=39.98 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=40.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC----CCeeEEEEEcCCh
Q psy10362 291 PKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT----IRAGITRVPTQEL 340 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~----~~rG~aFV~F~~~ 340 (388)
++|.|.+||+.+||+++.+.++....+.....+..+. ..-.-|+|.|.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~ 55 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQ 55 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSS
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCH
Confidence 5899999999999999999999998888877776542 2446688889443
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.91 E-value=0.028 Score=44.50 Aligned_cols=70 Identities=4% Similarity=-0.068 Sum_probs=47.4
Q ss_pred CCCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCC--ceeEEEEEeCChHhHHHHHHh-CCCCCCCC
Q psy10362 200 AGKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGR--SRGFGFVTFADPNNVGVVIQN-CPHTLDGR 269 (388)
Q Consensus 200 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~--skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr 269 (388)
+-+|.|+.||+.+||+++.+.++.+=++.....+..+.+-+ .-.-|+|.|.+.+++....+. +++.+.+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 46789999999999999888877654443322222222211 123589999999999998886 66555443
No 394
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.78 E-value=0.018 Score=48.10 Aligned_cols=76 Identities=12% Similarity=0.194 Sum_probs=51.5
Q ss_pred CCCcccCCCcCcHHHHHHHHhccCceeEE-EEeec--------CCCCC-----ceeEEEEEeCChHhHHHHHHhCCCCCC
Q psy10362 202 KPPADYSAYGTYAQYQQRYFSRYGEVIDC-VVMKN--------NETGR-----SRGFGFVTFADPNNVGVVIQNCPHTLD 267 (388)
Q Consensus 202 ~vfVgnLp~~~te~~L~~~F~~~G~I~~v-~i~~d--------k~tg~-----skG~gFV~F~~~~~A~~Ai~~~~~~l~ 267 (388)
-|.|-+.|.+ ....+.+.|++||.|++- .+.++ +.+.+ ....-.|+|+++.+|++||++++..|.
T Consensus 9 ~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii~ 87 (132)
T 3p3d_A 9 AILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVFN 87 (132)
T ss_dssp EEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEET
T ss_pred EEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEeC
Confidence 3555566544 446678899999998762 21110 00001 123668999999999999999999999
Q ss_pred CCCCCCCCCCC
Q psy10362 268 GRTIDPKPCNP 278 (388)
Q Consensus 268 Gr~i~v~~a~~ 278 (388)
|..|-|.+..+
T Consensus 88 G~mIGV~Py~~ 98 (132)
T 3p3d_A 88 GVLLGVIPYTK 98 (132)
T ss_dssp TEECEEEECCH
T ss_pred cEEEEEEECCH
Confidence 98777777654
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.21 E-value=0.057 Score=54.46 Aligned_cols=50 Identities=10% Similarity=0.191 Sum_probs=38.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHH
Q psy10362 291 PKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQK 344 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~ 344 (388)
+.|+|. .+..+++.+|.+.|++||.|..+...+++ .-|++|+|.+.++++
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~---g~~~~vef~~~~~~~ 103 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF---GLYAVVEFCQKESIG 103 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS---SEEEEEECC---CCH
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC---CeEEEEEeCCHHHHH
Confidence 679997 79999999999999999999999888653 489999997665544
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=92.64 E-value=0.18 Score=39.85 Aligned_cols=62 Identities=13% Similarity=0.234 Sum_probs=43.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhhcccccee
Q psy10362 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRRSSTTKVQ 362 (388)
Q Consensus 292 ~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~~~~i~ 362 (388)
+||+-..|.++...||.++|+.|| -..|+.+.| .-|||.|.+... |.+|++++......+|+
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fg-gv~I~WidD-----TsAlvvf~~~~~---a~~al~~i~~~~~y~i~ 68 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFG-NIQISWIDD-----TSAFVSLSQPEQ---VKIAVNTSKYAESYRIQ 68 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSE-EEEEEEEET-----TEEEEEEEEECH---HHHHHHHHTTCSSCCCC
T ss_pred eEEEEeCChhhhhHHHHHHHhccC-CEEEEEEcC-----CeEEEEecCHHH---HHHHHHhcccCCceEEE
Confidence 455559999999999999999998 555666665 358999966654 34555555444444443
No 397
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.23 E-value=0.87 Score=36.29 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=42.7
Q ss_pred CCeEEEcCCCCCC-C----HHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhhc
Q psy10362 290 FPKVFLGGLPSNV-T----ETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRRS 356 (388)
Q Consensus 290 ~~~lfV~nLp~~v-t----ee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~~ 356 (388)
.++|+|.||+.+| + .+.++++|+.|.++.....++. -.-..|.|.+.+. |..|+..|...
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS----FRRirv~F~~~~~---A~~AR~~Lh~~ 69 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS----FKRVRINFSNPLS---AADARLRLHKT 69 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT----TTEEEEECSSTTH---HHHHHHTSTTS
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc----ceEEEEEeCChHH---HHHHHHHhccc
Confidence 3689999999876 3 2577899999999999888854 3346889966644 44445555544
No 398
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=86.50 E-value=1.1 Score=36.53 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=41.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhh
Q psy10362 289 SFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRR 355 (388)
Q Consensus 289 ~~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~ 355 (388)
..+-|.|-+.+.+. .+.|.++|++||.|++.... ....+..|+|++ ..+|++||.+
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~~~NWihI~Y~s------~~~A~rAL~k 78 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----NTGNWMHIRYQS------KLQARKALSK 78 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----SSSSEEEEEESS------HHHHHHHHTT
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----CCCCeEEEEeCC------HHHHHHHHHh
Confidence 34679999999885 55778899999999988862 456789999944 4555555554
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=86.08 E-value=0.45 Score=37.50 Aligned_cols=63 Identities=10% Similarity=0.025 Sum_probs=41.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC----CCeeEEEEEcCChhhHHHHHHHHHHHhhccc
Q psy10362 290 FPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT----IRAGITRVPTQELPVQKEATAVQQVLRRSST 358 (388)
Q Consensus 290 ~~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~----~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~~ 358 (388)
..+|.|..||+.+||+++.+.++..-.+.....+..+. ..-.-|+|.| +..+++.......+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F------~~~edv~~F~~~f~g 75 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINF------RNPDDILLFRDRFDG 75 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEE------SCHHHHHHHHHHSTT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEe------CCHHHHHHHHHHcCC
Confidence 35899999999999999999888776665444443321 1235577888 344455555555443
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=81.76 E-value=1.6 Score=44.49 Aligned_cols=52 Identities=13% Similarity=0.243 Sum_probs=42.0
Q ss_pred CCCCcccCCCcCcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh
Q psy10362 201 GKPPADYSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN 261 (388)
Q Consensus 201 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~ 261 (388)
..++|+ ++..+...+|.++|+.||.| +|+.+.|. .+||.|.+.+.|..+++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHH
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHH
Confidence 345555 88899999999999999954 56655542 699999999999999985
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=57.54 E-value=25 Score=35.56 Aligned_cols=61 Identities=10% Similarity=0.280 Sum_probs=41.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCeeEEEEEcCChhhHHHHHHHHHHHhhccccce
Q psy10362 291 PKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQELPVQKEATAVQQVLRRSSTTKV 361 (388)
Q Consensus 291 ~~lfV~nLp~~vtee~L~~~F~~~G~I~~v~v~~d~~~~rG~aFV~F~~~~~~~~a~~a~~aL~~~~~~~i 361 (388)
..++|+ ++..+...+|.++|+.||.| +|+.+.| ..+||.|.+ .+.+..+.+++......+|
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-----t~a~V~~~~---~~~a~~~l~~~~~~~~~~i 501 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-----TSAFVSLSQ---PEQVQIAVNTSKYAESYRI 501 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-----SEEEEECSC---HHHHHHHHHHHTTCSSCEE
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-----CeEEEEECC---HHHHHHHHHHHHhCCceEE
Confidence 445554 89999999999999999854 5565544 348999844 3555566666655444444
No 402
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=54.16 E-value=51 Score=28.37 Aligned_cols=65 Identities=11% Similarity=0.078 Sum_probs=45.3
Q ss_pred eEEEcCCCCC---------CCHHHHHHHh--hcCCCeeEEEEecCCCCCeeEEEEEcCCh-hhHHHHHHHHHHHhhcc
Q psy10362 292 KVFLGGLPSN---------VTETDLRTFF--NRYGKVMEVVIMSPRTIRAGITRVPTQEL-PVQKEATAVQQVLRRSS 357 (388)
Q Consensus 292 ~lfV~nLp~~---------vtee~L~~~F--~~~G~I~~v~v~~d~~~~rG~aFV~F~~~-~~~~~a~~a~~aL~~~~ 357 (388)
++.|-|++.. .+..+|++.| +.|..++ |+.+.++.-++++++|.|... .-...|....+.+....
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~fek~Fe~~~ 90 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWNGLHNGLLFDKAYTVDG 90 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChHHHHHHHHHHHHHHHcC
Confidence 5667777752 3457899977 8996655 777777767899999999644 45566666666665543
No 403
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=46.74 E-value=6 Score=32.74 Aligned_cols=56 Identities=13% Similarity=0.328 Sum_probs=34.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEEecCC----------C-----CCeeEEEEEcCChhhHHHH
Q psy10362 290 FPKVFLGGLPSNVTETDLRTFFNRYGKVME-VVIMSPR----------T-----IRAGITRVPTQELPVQKEA 346 (388)
Q Consensus 290 ~~~lfV~nLp~~vtee~L~~~F~~~G~I~~-v~v~~d~----------~-----~~rG~aFV~F~~~~~~~~a 346 (388)
..-|.|-+.|++.++ .|.+.|++||.|.+ +.+.++. . ....+..|+|++..++.+|
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rA 78 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDA 78 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHH
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHH
Confidence 356788888777666 56679999999876 2222100 0 1357889999555444444
No 404
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=29.15 E-value=1e+02 Score=25.39 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=15.5
Q ss_pred ccccCceEEEEee---eceeeEee
Q psy10362 3 EDEQGLTYYITCF---LLQQVEIK 23 (388)
Q Consensus 3 ~~~~~~~~~~~~~---~~~~~~~~ 23 (388)
+|..|.+.|.+-| ....|++-
T Consensus 89 ~d~dG~~r~~~ei~a~va~~i~~l 112 (145)
T 1qvc_A 89 TDQSGQDRYTTEVVVNVGGTMQML 112 (145)
T ss_dssp CSSSSCEEEEEEEECTTCEEEECC
T ss_pred ECCCCcEEEEEEEeeeEeCEEEEc
Confidence 4677888898888 77766653
No 405
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=26.91 E-value=33 Score=30.16 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=21.1
Q ss_pred ccccCceEEEEeeeceee--EeeecCCCCCCCC
Q psy10362 3 EDEQGLTYYITCFLLQQV--EIKKAEPRDASNK 33 (388)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 33 (388)
+|.+|.+.|.|.|.-..| ||.-+++|..+.+
T Consensus 111 edkdG~kr~~tEVva~~~~~~i~fL~sk~~~~~ 143 (193)
T 3pgz_A 111 QDQNGNDRYTTEIVLQKYRGELQMLDGRAAAGG 143 (193)
T ss_dssp ECTTSCEEEEEEEEECTTCCEEEECC-------
T ss_pred ECCCCCEEEEEEEEEEeccCceEECcCCCCCCC
Confidence 467899999999998888 8999999987654
No 406
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=26.47 E-value=51 Score=31.62 Aligned_cols=58 Identities=12% Similarity=0.064 Sum_probs=39.3
Q ss_pred CCcccCCCc---CcHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCC
Q psy10362 203 PPADYSAYG---TYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGR 269 (388)
Q Consensus 203 vfVgnLp~~---~te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr 269 (388)
-+||||..- -....+.++.++||+|..+++... -+|...+++.++.++..+...+..|
T Consensus 19 P~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~~---------~~vvv~~p~~i~~vl~~~~~~f~~r 79 (479)
T 3tbg_A 19 PGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWT---------PVVVLNGLAAVREALVTHGEDTADR 79 (479)
T ss_dssp TTTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETTE---------EEEEEEHHHHHHHHHTTTGGGSCBC
T ss_pred CcccchHhhcCCCHHHHHHHHHHHhCCEEEEEECCe---------eEEEECCHHHHHHHHHhCChhhcCC
Confidence 378887533 234557888999999988887432 3566778888888876554455544
No 407
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=23.64 E-value=53 Score=24.23 Aligned_cols=59 Identities=7% Similarity=0.032 Sum_probs=35.1
Q ss_pred EEEEEeCChHhHHHHHHhCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcC
Q psy10362 244 FGFVTFADPNNVGVVIQNCPHTLDGRTI---DPKPCNPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRY 314 (388)
Q Consensus 244 ~gFV~F~~~~~A~~Ai~~~~~~l~Gr~i---~v~~a~~~~~~~~~~~~~~~~lfV~nLp~~vtee~L~~~F~~~ 314 (388)
|.++.|....++-+-|+. ...++...| .|+... .....++|| |.++++++++..+.++|
T Consensus 7 Yvl~~~~a~~~~i~Eler-~~rine~VlR~l~vr~d~---------~r~YE~m~I--l~P~l~ee~~~~~vek~ 68 (77)
T 3zzp_A 7 TTWYQVEMPEDRVNDLAR-ELRIRDNVRRVMVVASTT---------PGRYEVNIV--LNPNLDQSQLQNEKEII 68 (77)
T ss_dssp EEEEEEECCHHHHHHHHH-HHHTSTTEEEEEEEECSS---------TTEEEEEEE--ECTTCCHHHHHHHHHHH
T ss_pred EEEEEEEeCHhHHHHHHH-HhCCCHHHHHHHHHhccC---------CCceEEEEE--ECCCCCHHHHHHHHHHH
Confidence 788999776665555542 112333222 222211 123347888 77899999998887766
No 408
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=22.26 E-value=1.3e+02 Score=21.37 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=34.6
Q ss_pred cCcHHHHHHHHhccC-----ceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHh-CCCCCCCCCCCCCCC
Q psy10362 211 GTYAQYQQRYFSRYG-----EVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQN-CPHTLDGRTIDPKPC 276 (388)
Q Consensus 211 ~~te~~L~~~F~~~G-----~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~-~~~~l~Gr~i~v~~a 276 (388)
.++..+|..++..-+ .|-.|.|..+ |.||+-... .++.+++. ....+.++.+.++.+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEEEC
Confidence 466678888876544 3456666544 789888664 56667776 667788988887654
No 409
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=21.69 E-value=1.1e+02 Score=23.12 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=22.5
Q ss_pred ceeEEEEeecCCCCCceeEEEEEeCCh
Q psy10362 226 EVIDCVVMKNNETGRSRGFGFVTFADP 252 (388)
Q Consensus 226 ~I~~v~i~~dk~tg~skG~gFV~F~~~ 252 (388)
+|++|+|.+-...++-|+||=|+|++.
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd~ 31 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDEA 31 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETTT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECCE
Confidence 578888877766789999999999863
No 410
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=21.32 E-value=88 Score=30.23 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=42.8
Q ss_pred CCCcccCCCcC----cHHHHHHHHhccCceeEEEEeecCCCCCceeEEEEEeCChHhHHHHHHhCCCCCCCCC
Q psy10362 202 KPPADYSAYGT----YAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRT 270 (388)
Q Consensus 202 ~vfVgnLp~~~----te~~L~~~F~~~G~I~~v~i~~dk~tg~skG~gFV~F~~~~~A~~Ai~~~~~~l~Gr~ 270 (388)
-.+||||..-. -...+.++.++||+|..+++.. .-+|...+.+.++.++..+...+..|.
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~~k~il~~~~~~f~~rp 79 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT---------KTTVIVGHHQLAKEVLIKKGKDFSGRP 79 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHTTTTTTTBBCC
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC---------CCEEEECCHHHHHHHHHhCcHhhCCCC
Confidence 35788886432 2356778889999998888743 346778899999998876555565554
Done!