RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10362
(388 letters)
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 59.6 bits (144), Expect = 3e-12
Identities = 30/57 (52%), Positives = 39/57 (68%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPK 274
+ YF ++GEV +C+VM++ T RSRGFGFVTF D V V+ H LD +TIDPK
Sbjct: 18 REYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 74
Score = 41.9 bits (98), Expect = 5e-06
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
K+F+GGL T+ LR +F ++G+V E ++M
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP 36
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 58.4 bits (141), Expect = 7e-12
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPK 274
+ YF +GEV + +N+T + RGF F+TF + V +++ H + + K
Sbjct: 17 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK 73
Score = 43.8 bits (103), Expect = 1e-06
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
K+F+GGL + E +R +F +G+V + +
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 35
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 55.8 bits (134), Expect = 6e-11
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPK 274
+ YFS++GEV+DC + + TGRSRGFGFV F + +V V+ H L+G+ IDPK
Sbjct: 17 KDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPK 73
Score = 40.0 bits (93), Expect = 2e-05
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
K+F+GGL + T+ DL+ +F+++G+V++ +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDP 35
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 55.8 bits (134), Expect = 7e-11
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPK 274
+ +F ++G + DCVVM++ T RSRGFGFVT+A V + PH +DGR ++PK
Sbjct: 24 RSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPK 80
Score = 37.7 bits (87), Expect = 2e-04
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
K+F+GGL T+ LR+ F ++G + + V+M
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDP 42
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 58.5 bits (140), Expect = 8e-11
Identities = 43/110 (39%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ +F ++G + DCVVM++ T RSRGFGFVT+A V + PH +DGR ++PK
Sbjct: 24 RSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV 83
Query: 278 PR-TLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
R Q+P + + K+F+GG+ + E LR +F +YGK+ + IM+ R
Sbjct: 84 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 133
Score = 46.1 bits (108), Expect = 1e-06
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ YF +YG++ +M + +G+ RGF FVTF D ++V ++ HT++G + +
Sbjct: 115 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 174
Query: 278 PR 279
+
Sbjct: 175 SK 176
Score = 44.2 bits (103), Expect = 6e-06
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 285 KKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
K+ K+F+GGL T+ LR+ F ++G + + V+M
Sbjct: 1 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVM 39
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 55.7 bits (134), Expect = 1e-10
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ YFS +GEV+ V K+ +TG S+GFGFV F + V+ H +DGR D K N
Sbjct: 26 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKLPN 84
Query: 278 PR 279
+
Sbjct: 85 SK 86
Score = 36.9 bits (85), Expect = 4e-04
Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 281 LQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
+++ + +S + + GLP TE DL+ +F+ +G+V+ V +
Sbjct: 1 VKRAVQKTS--DLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDL 44
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 55.8 bits (134), Expect = 1e-10
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 210 YGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGR 269
+ T + + Y+ ++G++ DCVVM++ + RSRGFGFVTF+ V + PH++DGR
Sbjct: 30 FETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGR 89
Query: 270 TIDPKPCNPR 279
++PK R
Sbjct: 90 VVEPKRAVAR 99
Score = 41.2 bits (96), Expect = 2e-05
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 269 RTIDPKPCNPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
+T++ P +K ++ F K+F+GGL TE LR ++ ++GK+ + V+M
Sbjct: 3 KTLETVPLE----RKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDP 56
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 48.8 bits (116), Expect = 2e-08
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHT-LDGRTI 271
FS G ++ V ++ T RS G+ +V F P + + + G+ +
Sbjct: 18 YEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPV 72
Score = 45.3 bits (107), Expect = 4e-07
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
+++G L +VTE L F+ G ++ + +
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC 33
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 48.9 bits (116), Expect = 3e-08
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ +FS G+V D ++ + + RS+G +V F + +V + I L G I +
Sbjct: 36 EDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 95
Query: 278 PR 279
Sbjct: 96 AE 97
Score = 38.5 bits (89), Expect = 1e-04
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
VF L + + DL FF+ GKV +V I+
Sbjct: 20 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRII 51
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 48.4 bits (115), Expect = 4e-08
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 218 QRYFSRYGEVIDCVVMKN-NETGRSRGFGFVTFADPNNVGVVIQNCPH--TLDGRTI 271
+ FS +GE+ + K TG RGFGFV F + H L GR +
Sbjct: 26 RELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 82
Score = 47.2 bits (112), Expect = 1e-07
Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 282 QKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT 327
Q PKK ++ K+ + +P + ++R F+ +G++ V + T
Sbjct: 1 QVPKKQTT-SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMT 45
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 48.2 bits (114), Expect = 5e-08
Identities = 8/78 (10%), Positives = 23/78 (29%), Gaps = 8/78 (10%)
Query: 210 YGTYAQYQQRYFSRYGEVIDCVV-----MKNNETGRSRGFGFVTFADPNNVGVVIQNCPH 264
+G + +F+ + + + + + F F+ F + +
Sbjct: 11 FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGI 70
Query: 265 TLDGRTID---PKPCNPR 279
G+++ P P
Sbjct: 71 IFQGQSLKIRRPHDYQPL 88
Score = 38.2 bits (88), Expect = 1e-04
Identities = 8/43 (18%), Positives = 19/43 (44%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITR 334
++++G +P +TE + FFN ++ + + A
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN 45
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 45.7 bits (108), Expect = 3e-07
Identities = 4/53 (7%), Positives = 13/53 (24%), Gaps = 1/53 (1%)
Query: 230 CVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRT-IDPKPCNPRTL 281
+ + + + + + + I KPC + +
Sbjct: 27 YGNILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDKNV 79
Score = 30.7 bits (69), Expect = 0.056
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
V + G P L F +YG +++ V+ +
Sbjct: 6 WVTVFGFPQASASYILL-QFAQYGNILKHVMSNTG 39
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 44.9 bits (106), Expect = 4e-07
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT 327
K+ + L V++ D++ F +G + + + R+
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRS 37
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 44.3 bits (104), Expect = 7e-07
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPK 274
+ YF ++G+V D ++M + T R RGFGFVTF + V V + H ++ + ++ K
Sbjct: 17 KHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK 73
Score = 40.9 bits (95), Expect = 1e-05
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYG 315
K+F+GGL N T D++ +F ++G
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFG 24
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 41.9 bits (98), Expect = 7e-06
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 285 KKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
K + ++F+G LP ++TE ++R F +YGK EV I
Sbjct: 3 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH 41
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 41.5 bits (97), Expect = 8e-06
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
+ + LP ++T+ +L F G + IM
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIM 35
Score = 34.6 bits (79), Expect = 0.002
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
F G + C +M++ +TG S G+ FV F + Q L+G T+ K
Sbjct: 20 YALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDS----QRAIKVLNGITVRNKRLK 75
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 41.5 bits (97), Expect = 8e-06
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVM 318
+++ LP +T+ L T F +YG ++
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIV 34
Score = 41.5 bits (97), Expect = 8e-06
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTID 272
F +YG ++ ++++ TGR RG FV + Q L+ +
Sbjct: 24 DTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA----QEAISALNNVIPE 74
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 41.5 bits (97), Expect = 9e-06
Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNC-PHTLDGRTIDPKPC 276
+ + +G + ++K++ TG S+G+ F + D N I L + + +
Sbjct: 19 KELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 78
Query: 277 NPRTLQKPKKNS 288
+ KN+
Sbjct: 79 SVG-----AKNA 85
Score = 36.1 bits (83), Expect = 6e-04
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
K+F+GGLP+ + + ++ +G + ++
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS 37
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 41.8 bits (98), Expect = 1e-05
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKP 275
+ S++G++ ++ G V+F DP C TLDGR +
Sbjct: 37 RVECSKFGQIRKLLLFDR----HPDGVASVSFRDPEEA----DYCIQTLDGRWFGGRQ 86
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 41.5 bits (97), Expect = 1e-05
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 282 QKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
Q KN V+ GG+ S +T+ +R F+ +G++ME+ +
Sbjct: 13 QSSPKNC---TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF 51
Score = 27.2 bits (60), Expect = 1.0
Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCP-HTLDGRTI 271
++ FS +G++++ V + FV F+ + I + T++G +
Sbjct: 36 RQTFSPFGQIMEIRVFPEKG------YSFVRFSTHESAAHAIVSVNGTTIEGHVV 84
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 41.8 bits (97), Expect = 1e-05
Identities = 15/99 (15%), Positives = 34/99 (34%), Gaps = 8/99 (8%)
Query: 193 PNPSGPSAGKPPAD--------YSAYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGF 244
P+ S + P + + ++ +F + V D + + G++ G
Sbjct: 3 PSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGE 62
Query: 245 GFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPRTLQK 283
GFV F + + + + R I P + + +
Sbjct: 63 GFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 101
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 40.9 bits (95), Expect = 1e-05
Identities = 19/65 (29%), Positives = 36/65 (55%)
Query: 210 YGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGR 269
T + + YF +YG++ +M + +G+ RGF FVTF D ++V ++ HT++G
Sbjct: 12 EDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGH 71
Query: 270 TIDPK 274
+ +
Sbjct: 72 NCEVR 76
Score = 36.6 bits (84), Expect = 4e-04
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
K+F+GG+ + E LR +F +YGK+ + IM+ R
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 38
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 41.1 bits (96), Expect = 1e-05
Identities = 9/45 (20%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 282 QKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
+K K S +++G L TE + F++ G + ++++ +
Sbjct: 1 EKLLKKSC--TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK 43
Score = 38.0 bits (88), Expect = 2e-04
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNC-PHTLDGRTI 271
FS+ G++ ++ + + GF FV + + ++ LD R I
Sbjct: 25 YELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRII 79
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 41.2 bits (96), Expect = 1e-05
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 197 GPSAGKPPADYS-----AYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFAD 251
G S+GKP + +F Y + V +K NE G G V F
Sbjct: 1 GASSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFES 60
Query: 252 PNNVGVVIQNCP-HTLDGRTI 271
+ + + + R +
Sbjct: 61 RDEATAAVIDLNDRPIGSRKV 81
Score = 32.3 bits (73), Expect = 0.017
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
+ + +P V+ ++ FF Y + V +
Sbjct: 11 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCL 42
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 40.5 bits (94), Expect = 3e-05
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 284 PKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIR 329
P ++S +++ GL +VT DL FF + G V I
Sbjct: 2 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIH 47
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 40.4 bits (94), Expect = 3e-05
Identities = 7/43 (16%), Positives = 17/43 (39%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITR 334
++F+GG+P ++ + + + VI+ R
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNR 45
Score = 36.6 bits (84), Expect = 5e-04
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 5/67 (7%)
Query: 218 QRYFSRYGEVIDCV--VMKNNETGRSRGFGFVTFADPNNVGVVIQNC---PHTLDGRTID 272
++ E + V + ++RGF FV + + + L G I
Sbjct: 19 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 78
Query: 273 PKPCNPR 279
P
Sbjct: 79 VDWAEPE 85
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 40.4 bits (94), Expect = 3e-05
Identities = 6/39 (15%), Positives = 17/39 (43%)
Query: 285 KKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
+ S +F+ L ++ L F+ +G ++ ++
Sbjct: 3 LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 41
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 40.4 bits (94), Expect = 3e-05
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKP 275
+YGEV + V N G +V F + + + L+ R + +P
Sbjct: 45 TEMEEKYGEVEEMNVCD-NLGDHLVGNVYVKFRREEDAEKAVID----LNNRWFNGQP 97
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 39.7 bits (92), Expect = 3e-05
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
K+++G L VT DLR F + ++
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKS 37
Score = 37.7 bits (87), Expect = 2e-04
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 8/63 (12%)
Query: 219 RYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQ--NCPHTLDGRTIDPKPC 276
+ F + V+ G+ FV + D N I+ + L G+ ++
Sbjct: 20 QLFGDRKLPLAGQVLLK------SGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 73
Query: 277 NPR 279
+
Sbjct: 74 VSK 76
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 39.6 bits (92), Expect = 3e-05
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 294 FLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
F+ L + TE L+ F++ G + I +
Sbjct: 2 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKK 34
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 40.2 bits (93), Expect = 4e-05
Identities = 10/78 (12%), Positives = 26/78 (33%)
Query: 210 YGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGR 269
+ ++ + V + + G+ G V F + ++ + L+GR
Sbjct: 18 FSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 77
Query: 270 TIDPKPCNPRTLQKPKKN 287
+++ +KN
Sbjct: 78 EAFVHVVTLEDMREIEKN 95
Score = 31.0 bits (69), Expect = 0.057
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 286 KNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
NS+ + +P ++T+ D+ F V +
Sbjct: 4 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHV 41
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 39.3 bits (91), Expect = 5e-05
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 293 VFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
+F+G L + E L F+ +G +++ +
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKI 31
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 39.3 bits (91), Expect = 5e-05
Identities = 9/35 (25%), Positives = 22/35 (62%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
+++ GLP +T+ +L F++YG+++ I+ +
Sbjct: 8 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 42
Score = 38.9 bits (90), Expect = 7e-05
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNC-PHTLDGRT 270
++ FS+YG +I ++ + TG SRG GF+ F I+ G T
Sbjct: 24 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 77
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 39.3 bits (91), Expect = 7e-05
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNC-PHTLDGRTIDPKPC 276
F +G++ D + + ET + RGF FV F + I N L GRTI
Sbjct: 23 HAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 82
Query: 277 NPRTLQKPKK 286
P + K+
Sbjct: 83 KPM---RIKE 89
Score = 35.8 bits (82), Expect = 0.001
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
+++GGL V + L F +G + ++ I
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIP 38
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 38.6 bits (89), Expect = 8e-05
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVM 318
+++ P + T+ ++R V
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVA 29
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 39.0 bits (90), Expect = 9e-05
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPK--- 274
++YF +G++ + VV+ + +TG+SRG+GFVT AD ++ +DGR +
Sbjct: 28 RKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAY 87
Query: 275 -PCNPRTLQ 282
PR+LQ
Sbjct: 88 LGAKPRSLQ 96
Score = 37.8 bits (87), Expect = 3e-04
Identities = 16/46 (34%), Positives = 31/46 (67%)
Query: 281 LQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
+ +K+++F K+F+GGLP + T+ LR +F +G + E V+++ R
Sbjct: 1 MHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDR 46
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 38.5 bits (89), Expect = 1e-04
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNC-PHTLDGRTIDPKPC 276
F + G V++ + K+ TG+ +G+GFV F + I+ L G+ I
Sbjct: 27 WELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 86
Query: 277 NPR 279
+
Sbjct: 87 SAH 89
Score = 37.3 bits (86), Expect = 3e-04
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
V++GGL V+E L F + G V+ +
Sbjct: 11 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMP 42
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 38.4 bits (88), Expect = 1e-04
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 210 YGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGR 269
+ S D + + TG +R FG+V F ++ ++ + G
Sbjct: 23 PNKSVAELKVAISELFAKNDLA-VVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGN 81
Query: 270 TIDPKPCNPR 279
I + R
Sbjct: 82 EIKLEKPKGR 91
Score = 28.4 bits (62), Expect = 0.39
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIR 329
+F+G L N + +L+ + ++ ++ RT
Sbjct: 15 NLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGT 52
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 38.1 bits (88), Expect = 2e-04
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 277 NPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGIT 333
+P T +K + + L N+TE +L+ F ++ V A I
Sbjct: 6 DPCTSKKVRAAR---TLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIE 59
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 37.7 bits (87), Expect = 2e-04
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCN 277
+ +FS+YG+V+D + K R F FVTFAD + + G ++
Sbjct: 23 REFFSQYGDVMDVFIPKPF-----RAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76
Query: 278 PR 279
P+
Sbjct: 77 PK 78
Score = 36.2 bits (83), Expect = 8e-04
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
+S VF+G ++TE +LR FF++YG VM+V I
Sbjct: 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIP 38
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 37.9 bits (88), Expect = 2e-04
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 283 KPKKNSSFPKVFLGGL-PSNVTETDLRTFFNRYGKVMEVVIM 323
K S +VF+G L V ++D+ F++YGK++ +
Sbjct: 8 KTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH 49
Score = 37.9 bits (88), Expect = 2e-04
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCP-HTLDGRTIDPKPC 276
+ FS+YG+++ C V +GF FV + + N + + G+ +D
Sbjct: 34 EAIFSKYGKIVGCSVH--------KGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLA 85
Query: 277 NPRTLQKPKKNS 288
+ + +S
Sbjct: 86 AEPKVNRSGPSS 97
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 37.7 bits (87), Expect = 2e-04
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 284 PKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
+ S+ ++ + +P + DLR F ++GK+++V I+
Sbjct: 5 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 47
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 37.9 bits (87), Expect = 4e-04
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 293 VFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIR 329
F G L DL F+ +G++ + +
Sbjct: 14 KFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEG 50
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 36.2 bits (83), Expect = 6e-04
Identities = 7/43 (16%), Positives = 20/43 (46%)
Query: 284 PKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
P+++ +F+ + E +++ F YG++ + + R
Sbjct: 1 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDR 43
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 36.2 bits (83), Expect = 7e-04
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
+ + GL TE DLR F++YG + +V I+
Sbjct: 11 CLGVFGLSLYTTERDLREVFSKYGPIADVSIV 42
Score = 33.9 bits (77), Expect = 0.004
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNC-PHTLDGRTI 271
+ FS+YG + D ++ + ++ RSRGF FV F + ++ + LDGR I
Sbjct: 27 REVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 81
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 35.5 bits (81), Expect = 0.001
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVM 318
+ + LP N+T+ + R+ F G++
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIE 30
Score = 31.6 bits (71), Expect = 0.025
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCP-HTLDGRTIDPKPC 276
+ F GE+ C ++++ TG+S G+GFV + DP + I L +TI
Sbjct: 20 RSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 79
Query: 277 NP 278
P
Sbjct: 80 RP 81
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 35.8 bits (82), Expect = 0.001
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
+++G L +VTE + F++ G +++
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH 44
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 35.2 bits (80), Expect = 0.001
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 210 YGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGR 269
+YF G +I V + + ++ F + FA + I +
Sbjct: 10 KSYNQNKVYKYFKHCGPIIHVDVADSLK--KNFRFARIEFARYDGALAAITKTHKVVGQN 67
Query: 270 TI 271
I
Sbjct: 68 EI 69
Score = 35.2 bits (80), Expect = 0.001
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
V + LP + + + +F G ++ V +
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVA 33
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 36.2 bits (83), Expect = 0.001
Identities = 8/52 (15%), Positives = 21/52 (40%)
Query: 288 SSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQE 339
S ++ + L VT L F+++G V++++ + + +
Sbjct: 5 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 56
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 35.5 bits (81), Expect = 0.001
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 293 VFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
V GGL + V+ L + G V +++
Sbjct: 23 VANGGLGNGVSRNQLLPVLEKCGLVDALLMP 53
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 35.1 bits (80), Expect = 0.002
Identities = 7/32 (21%), Positives = 18/32 (56%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
V++ G P++ T D++ + G+V+ + +
Sbjct: 8 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 39
Score = 27.8 bits (61), Expect = 0.57
Identities = 5/55 (9%), Positives = 15/55 (27%)
Query: 217 QQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTI 271
+ + + + M+ +G FV F + ++ +
Sbjct: 22 DIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDL 76
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 35.1 bits (80), Expect = 0.002
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 210 YGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNC-PHTLDG 268
+ T Q ++ FS+YG++ + VV+K+ ET RSRGFGFVTF + ++ + ++DG
Sbjct: 15 FDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG 74
Query: 269 RTIDPKPCNPRT 280
R I +
Sbjct: 75 RQIRVDQAGKSS 86
Score = 31.6 bits (71), Expect = 0.028
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
K+F+GGL + E L F++YG++ EVV++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVV 38
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 34.6 bits (79), Expect = 0.002
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
+ + L + ETDL+ F +G + + + +
Sbjct: 10 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDK 44
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 35.4 bits (81), Expect = 0.003
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIR 329
+++ LP +T ++ F +YG + ++ + + R
Sbjct: 9 ILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETR 46
Score = 35.4 bits (81), Expect = 0.003
Identities = 15/99 (15%), Positives = 28/99 (28%), Gaps = 17/99 (17%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHT-LDGRTIDPKPC 276
F +YG + V +RG +V + D + + + R +
Sbjct: 25 YDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYY 81
Query: 277 NPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYG 315
N + + K E L+ +YG
Sbjct: 82 NAN---RAFQKMDTKK----------KEEQLKLLKEKYG 107
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 34.7 bits (79), Expect = 0.003
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
++F+ L +E DL F+ YG + E+
Sbjct: 10 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDS 44
Score = 31.6 bits (71), Expect = 0.033
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCP-HTLDGRTIDPKPC 276
++ FS YG + + ++ T + +GF FVTF P + GR + P
Sbjct: 26 EKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85
Query: 277 NPRTLQKPKKNSS 289
+ SS
Sbjct: 86 TIKKEASQSGPSS 98
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 34.3 bits (78), Expect = 0.004
Identities = 8/38 (21%), Positives = 21/38 (55%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIR 329
++++G LP ++ D+ F +YG + ++ + + R
Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGP 53
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 34.4 bits (78), Expect = 0.004
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 284 PKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
P + VF+ L + E L ++G + V ++
Sbjct: 2 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHP 44
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 34.0 bits (77), Expect = 0.005
Identities = 7/60 (11%), Positives = 17/60 (28%)
Query: 220 YFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPR 279
+ + E + F+ F + ++ +Q L R I + +
Sbjct: 26 FEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKK 85
Score = 28.9 bits (64), Expect = 0.29
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 292 KVFLGGLPSNVT-ETDLRTFFNRYGKVM 318
++ + L + + E LR F +G +
Sbjct: 6 EIMIRNLSTELLDENLLRESFEGFGSIE 33
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 33.5 bits (76), Expect = 0.006
Identities = 5/37 (13%), Positives = 12/37 (32%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTI 328
+++ L + +E + FN + R
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDY 46
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 33.6 bits (76), Expect = 0.008
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
++L L VTE DL + F R+ + I
Sbjct: 20 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRM 54
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 33.1 bits (75), Expect = 0.009
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 282 QKPKKNSSFPKVFLGGLP-SNVTETDLRTFFNRYGKVMEVVIM 323
QK + + V + L +G + +I+
Sbjct: 1 QKGRVETR-RVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL 42
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 31.9 bits (72), Expect = 0.026
Identities = 7/51 (13%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 283 KPKKNSSFPKVFLGGLPSNVTETDLR----TFFNRYGKVMEVVIMSPRTIR 329
+P +++ L + + +L+ F+R+G+++++++ +R
Sbjct: 1 RPNH-----TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMR 46
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 32.0 bits (72), Expect = 0.029
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
+F+ LP + DL F +G V+ +
Sbjct: 20 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 51
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 31.7 bits (71), Expect = 0.035
Identities = 11/80 (13%), Positives = 21/80 (26%), Gaps = 12/80 (15%)
Query: 218 QRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCPHT-LDGRTID---- 272
+ F Y + K+ + F++P + T G+ +
Sbjct: 28 ESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFA 81
Query: 273 -PKPCNPRTLQKPKKNSSFP 291
L P + S P
Sbjct: 82 QTLHIGSSHLAPPNPDKSGP 101
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 31.6 bits (71), Expect = 0.035
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
FLG LP +VTE ++ FF +
Sbjct: 17 TAFLGNLPYDVTEESIKEFFRGLNISAVRLPR 48
Score = 29.7 bits (66), Expect = 0.18
Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 9/102 (8%)
Query: 196 SGPSAGKPPADYS--------AYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFV 247
SG S + P Y + + +F + + + R +GFG+
Sbjct: 3 SGSSGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYA 62
Query: 248 TFADPNNVGVVIQNCPHTLDGRTIDPKPCNPRTLQKPKKNSS 289
F D +++ + +L + I + K SS
Sbjct: 63 EFEDLDSLLSALSLNEESLGNKRIRVDVADQAQ-DKDSGPSS 103
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 30.9 bits (69), Expect = 0.035
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 293 VFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
+++ GL T+ DL YGK++ +
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAI 31
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 31.6 bits (71), Expect = 0.037
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 284 PKKNSSFPKVFLGGLPSNVTETDLRTFFNRY 314
P + S VF+G +P TE L+ F+
Sbjct: 2 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEV 32
Score = 25.5 bits (55), Expect = 5.7
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 210 YGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPNNVGVVIQNCP-HTLDG 268
Y + + FS G V+ ++ + ETG+ +G+GF + D ++N G
Sbjct: 18 YEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG 77
Query: 269 RTIDPKPCNPRTLQKPKKNSS 289
R + ++ K+
Sbjct: 78 RALRVDNAASEKNKEELKSLG 98
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 31.3 bits (70), Expect = 0.039
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 292 KVFLGGLPSNVTETDLRTFFN---RYGKVMEVVIMSPR 326
VF+ GL + + ++ ++GK+ +VVI +
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNST 47
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 31.2 bits (70), Expect = 0.043
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
++++GGL N + L F+R+G + + +
Sbjct: 19 RLWVGGLGPNTSLAALAREFDRFGSIRTIDHV 50
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 30.8 bits (69), Expect = 0.046
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 284 PKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPR 326
P+K + +++ G +T T LR F+ +G ++++ + PR
Sbjct: 2 PRKGN---TLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPR 39
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 30.1 bits (67), Expect = 0.12
Identities = 7/38 (18%), Positives = 18/38 (47%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIR 329
+++ LP ++ E +L +G+V+ I+ +
Sbjct: 20 NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGT 57
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 29.7 bits (66), Expect = 0.17
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 283 KPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
++++ V + GLP TE D+ FF+ + + +
Sbjct: 8 SSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEI 48
Score = 28.9 bits (64), Expect = 0.29
Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 8/94 (8%)
Query: 192 GPNPSGPSAGKPPADYS------AYGTYAQYQQRYFSRYGEVIDCVVMKNNETGRSRGFG 245
G + S S+ + + Y +FS + + + + GR G
Sbjct: 1 GSSGSSGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPD--GRVTGEA 58
Query: 246 FVTFADPNNVGVVIQNCPHTLDGRTIDPKPCNPR 279
V FA + + + R ++ +
Sbjct: 59 DVEFATHEDAVAAMAKDKANMQHRYVELFLNSTA 92
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 29.5 bits (65), Expect = 0.18
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVM 318
+V + GLP + + DL+ G V
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREAGDVC 28
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 29.3 bits (65), Expect = 0.19
Identities = 10/47 (21%), Positives = 24/47 (51%)
Query: 293 VFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQE 339
+ L +P +V+E DL+ F+ G V++ + + + ++ + E
Sbjct: 13 LHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVE 59
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 29.4 bits (65), Expect = 0.21
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
V L GLP ++ ++ FF+ V + +
Sbjct: 17 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 48
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 29.4 bits (65), Expect = 0.23
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 291 PKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
P V + GL +V E DL ++G + V++M
Sbjct: 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMM 48
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 27.8 bits (61), Expect = 0.68
Identities = 7/44 (15%), Positives = 14/44 (31%)
Query: 287 NSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRA 330
+S + + LP + ++ Y V + RT
Sbjct: 2 SSGSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFV 45
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 27.8 bits (61), Expect = 0.75
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 284 PKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRT 327
P S +V + GLP + + DL+ G V +
Sbjct: 9 PPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGM 52
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 27.2 bits (59), Expect = 0.81
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 293 VFLGGLPSNVTETDLRTFFNRYGKVMEVVIM 323
+ + GLP +VT ++ + Y V
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKYCFVDK 31
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 28.3 bits (62), Expect = 0.83
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 273 PKPCNPRTLQKPKKNSSFPKVFLGGLPSNVTETDLRTFFNRYGKVM 318
+ P T P+ + + + +P+ V E LR F RYG +
Sbjct: 26 QQQHIPPTQMNPEPDVLR-NLMVNYIPTTVDEVQLRQLFERYGPIE 70
>d1kv7a3 b.6.1.3 (A:336-516) multi-copper oxidase CueO
{Escherichia coli [TaxId: 562]}
Length = 181
Score = 28.1 bits (62), Expect = 1.3
Identities = 7/43 (16%), Positives = 8/43 (18%), Gaps = 1/43 (2%)
Query: 51 MAMG-PNMGMGTPSGPMAGMTPMGPGNMMQGYQGWGSTPQTQG 92
+ M M M M MM G
Sbjct: 22 PMLDMMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGNMNHMNHG 64
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 130
Score = 27.4 bits (61), Expect = 1.6
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 173 TTPAAGGPPAGGATGAAPTGPNPSGPSA 200
+ A P GA G APT P P+ +
Sbjct: 19 SPGGAQAPATTGAAGTAPTAPQPTAAPS 46
Score = 25.5 bits (56), Expect = 6.9
Identities = 7/28 (25%), Positives = 7/28 (25%)
Query: 168 PQNGPTTPAAGGPPAGGATGAAPTGPNP 195
G PA G T PT
Sbjct: 19 SPGGAQAPATTGAAGTAPTAPQPTAAPS 46
>d1h41a1 c.1.8.10 (A:152-712) alpha-D-glucuronidase catalytic domain
{Pseudomonas cellulosa [TaxId: 155077]}
Length = 561
Score = 28.2 bits (63), Expect = 2.0
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 69 MTPMGPGNMMQGYQGWGSTPQTQGFP-GQWAPS 100
+P+G ++ +G P T P W
Sbjct: 363 RSPLGLTHLYSQGDHYGPAPWTDDLPRADWTAV 395
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 26.6 bits (58), Expect = 2.2
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 291 PKVFLGGL-PSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGIT 333
+ + L P VT L F YG V V I+ + A +
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQ 46
>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase
CbhA {Clostridium thermocellum [TaxId: 1515]}
Length = 511
Score = 27.9 bits (61), Expect = 2.3
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 104 PMNGYANPSAPQGYTNWGAPPGPQAPPQWGSSYGAPPQQTGY 145
P P+ P G + G + P + P Q +
Sbjct: 438 PQTSKRFPAPPPGIISGGPNSRFEDPTINAAVKKDTPPQKCF 479
>d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp.
[TaxId: 1931]}
Length = 258
Score = 27.7 bits (61), Expect = 2.4
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 149 GPTSGAPQSGYGNNWNWNMPQNGPTTPAAGGPPAGGATGAAPTGPNPSGPSAGKP 203
GP +G+ W W + A+ A G G PT + P A
Sbjct: 204 GPAAGSAGRYLDTLWTWTCQN--KSNIASVWFAASGNAGCMPTMHKDTNPKASPA 256
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 26.1 bits (56), Expect = 3.3
Identities = 7/45 (15%), Positives = 17/45 (37%)
Query: 292 KVFLGGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVP 336
+ LP+ +++ F+R+G + V++ P
Sbjct: 12 VILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEP 56
>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 665
Score = 27.4 bits (60), Expect = 3.4
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 296 GGLPSNVTETDLRTFFNRYGKVMEVVIMSPRTIRAGITRVPTQ 338
G PS + ++RT+F+ +G VM + R T V T
Sbjct: 445 AGRPSLLRHDEVRTYFHEFGHVMHQICAQTDFARFSGTNVETD 487
>d2ef1a1 c.23.14.3 (A:45-291) ADP ribosyl cyclase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 247
Score = 26.3 bits (58), Expect = 6.9
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 268 GRTIDPKPCNPRTLQK--PKKNSSFPKVFLGGLPSNVTETDLRTFFN 312
R + +P +F F+ P N+TE D +
Sbjct: 21 ARCVKYTEIHPEMRHVDCQSVWDAFKGAFISKHPCNITEEDYQPLMK 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.132 0.420
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,515,925
Number of extensions: 74543
Number of successful extensions: 317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 154
Length of query: 388
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 301
Effective length of database: 1,213,086
Effective search space: 365138886
Effective search space used: 365138886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.2 bits)