BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10364
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D2N|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 1 And 2
Domain
Length = 83
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 24/31 (77%), Gaps = 2/31 (6%)
Query: 21 GRCNREKPPCKYFHPPQHLKDQLLINGRNHL 51
GRC+RE CKY HPP HLK QL INGRN+L
Sbjct: 52 GRCSREN--CKYLHPPPHLKTQLEINGRNNL 80
>pdb|2RPP|A Chain A, Solution Structure Of Tandem Zinc Finger Domain 12 In
Muscleblind-Like Protein 2
Length = 89
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 19 ILGRCNREKPPCKYFHPPQHLKDQLLIN 46
+ GRC+RE CKY HPP HLK QL IN
Sbjct: 58 LKGRCSREN--CKYLHPPTHLKTQLEIN 83
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 11 TLNYGTFWILGRCNREKPPCKYFHPPQHLKDQLLINGR 48
TL + G C+R CK+ HPP+ + + NGR
Sbjct: 16 TLEVCRQFQRGTCSRSDEECKFAHPPKSCQ---VENGR 50
>pdb|3D2Q|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain
pdb|3D2Q|B Chain B, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain
pdb|3D2Q|C Chain C, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain
pdb|3D2Q|D Chain D, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain
pdb|3D2S|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain In Complex With Cgcugu Rna
pdb|3D2S|B Chain B, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain In Complex With Cgcugu Rna
pdb|3D2S|C Chain C, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain In Complex With Cgcugu Rna
pdb|3D2S|D Chain D, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain In Complex With Cgcugu Rna
Length = 70
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 10 STLNYGTFWILGRCNREKPPCKYFHPPQHLK 40
+T+ +I GRC+REK CKYFHPP HL+
Sbjct: 40 NTVTVCMDYIKGRCSREK--CKYFHPPAHLQ 68
>pdb|2E5S|A Chain A, Solution Structure Of The Zf-Ccchx2 Domain Of
Muscleblind- Like 2, Isoform 1 [homo Sapiens]
Length = 98
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 10 STLNYGTFWILGRCNREKPPCKYFHPPQHLKDQL 43
+T+ +I GRC REK CKYFHPP HL+ ++
Sbjct: 54 NTVTVCMDYIKGRCMREK--CKYFHPPAHLQAKI 85
>pdb|2RD3|A Chain A, Crystal Structure Of Tena Homologue (Hp1287) From
Helicobacter Pylori
pdb|2RD3|D Chain D, Crystal Structure Of Tena Homologue (Hp1287) From
Helicobacter Pylori
Length = 223
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 72 GQIPAVVSAAFYPHWIL-FPTDDVASAI-WRISCLKNLKSFESRNKEERKEEL 122
QIP + AFY HWI + + + + + W I+ L +L S+ + E+ +E+
Sbjct: 153 SQIPNALEHAFYGHWIKGYSSKEFQACVNWNINLLDSLTLASSKQEIEKLKEI 205
>pdb|3IBX|A Chain A, Crystal Structure Of F47y Variant Of Tena (Hp1287) From
Helicobacter Pylori
pdb|3IBX|D Chain D, Crystal Structure Of F47y Variant Of Tena (Hp1287) From
Helicobacter Pylori
Length = 221
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 72 GQIPAVVSAAFYPHWIL-FPTDDVASAI-WRISCLKNLKSFESRNKEERKEEL 122
QIP + AFY HWI + + + + + W I+ L +L S+ + E+ +E+
Sbjct: 151 SQIPNALEHAFYGHWIKGYSSKEFQACVNWNINLLDSLTLASSKQEIEKLKEI 203
>pdb|2LQT|A Chain A, Solution Structure Of Chchd7
Length = 85
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 3 RASTYYLSTLNYGTFWILGRCNREKPPCKYFHPPQHLKDQLL 44
R STY+L N FW R K K F P +D++L
Sbjct: 36 RCSTYFLRYKNCRRFWNSIVMQRRKNGVKPFMPTAAERDEIL 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,211,449
Number of Sequences: 62578
Number of extensions: 151226
Number of successful extensions: 232
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 12
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)