BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10364
(129 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O16011|MBL_DROME Protein muscleblind OS=Drosophila melanogaster GN=mbl PE=2 SV=2
Length = 297
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 50/64 (78%), Positives = 58/64 (90%)
Query: 19 ILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMVPGQIPAVV 78
I GRCNR+KPPCKYFHPPQHLKDQLLINGRNHLALKNAL+QQMG+ PGQP++ GQ+PAV
Sbjct: 62 IKGRCNRDKPPCKYFHPPQHLKDQLLINGRNHLALKNALMQQMGIAPGQPVISGQVPAVA 121
Query: 79 SAAF 82
+ +
Sbjct: 122 TNPY 125
>sp|Q94250|MBL_CAEEL Muscleblind-like protein OS=Caenorhabditis elegans GN=mbl-1 PE=1
SV=2
Length = 324
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
Query: 19 ILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMV 70
I GRC RE P CKY HPPQH+KDQLLINGRNHLALKN L Q+ T G PMV
Sbjct: 82 IKGRCTRENPKCKYLHPPQHIKDQLLINGRNHLALKNLLSAQLNQT-GTPMV 132
>sp|A8XND8|MBL_CAEBR Muscleblind-like protein OS=Caenorhabditis briggsae GN=mbl-1 PE=3
SV=2
Length = 299
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 35/43 (81%)
Query: 19 ILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQM 61
I GRC RE P CKY HPPQH+KDQLLINGRNHLALKN L Q+
Sbjct: 82 IKGRCTRENPKCKYLHPPQHIKDQLLINGRNHLALKNLLSAQI 124
>sp|Q5ZKW9|MBNL1_CHICK Muscleblind-like protein 1 OS=Gallus gallus GN=MBNL1 PE=2 SV=1
Length = 369
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 44/79 (55%), Gaps = 16/79 (20%)
Query: 21 GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKN---ALLQQMGLT----PGQPMVPGQ 73
GRC+RE CKY HPP HLK QL INGRN+L + L QQM L PG P+ P
Sbjct: 59 GRCSREN--CKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVP 116
Query: 74 IPAV-------VSAAFYPH 85
+ +V SAAF P+
Sbjct: 117 MFSVAPSLATNASAAFNPY 135
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Query: 10 STLNYGTFWILGRCNREKPPCKYFHPPQHLKDQL 43
+T+ +I GRC+REK CKYFHPP HL+ ++
Sbjct: 215 NTVTVCMDYIKGRCSREK--CKYFHPPAHLQAKI 246
>sp|Q9JKP5|MBNL1_MOUSE Muscleblind-like protein 1 OS=Mus musculus GN=Mbnl1 PE=1 SV=1
Length = 341
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 44/79 (55%), Gaps = 16/79 (20%)
Query: 21 GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKN---ALLQQMGLT----PGQPMVPGQ 73
GRC+RE CKY HPP HLK QL INGRN+L + L QQM L PG P+ P
Sbjct: 59 GRCSREN--CKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVP 116
Query: 74 IPAV-------VSAAFYPH 85
+ +V SAAF P+
Sbjct: 117 MFSVAPSLATSASAAFNPY 135
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Query: 10 STLNYGTFWILGRCNREKPPCKYFHPPQHLKDQL 43
+T+ +I GRC+REK CKYFHPP HL+ ++
Sbjct: 215 NTVTVCMDYIKGRCSREK--CKYFHPPAHLQAKI 246
>sp|Q9NR56|MBNL1_HUMAN Muscleblind-like protein 1 OS=Homo sapiens GN=MBNL1 PE=1 SV=2
Length = 388
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 35/58 (60%), Gaps = 9/58 (15%)
Query: 21 GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKN---ALLQQMGLT----PGQPMVP 71
GRC+RE CKY HPP HLK QL INGRN+L + L QQM L PG P+ P
Sbjct: 59 GRCSREN--CKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQP 114
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Query: 10 STLNYGTFWILGRCNREKPPCKYFHPPQHLKDQL 43
+T+ +I GRC+REK CKYFHPP HL+ ++
Sbjct: 216 NTVTVCMDYIKGRCSREK--CKYFHPPAHLQAKI 247
>sp|F2Z3T4|MBNL2_RAT Muscleblind-like protein 2 OS=Rattus norvegicus GN=Mbnl2 PE=1 SV=1
Length = 373
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 21 GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNA----LLQQMG-LTPGQPMVP 71
GRC+RE CKY HPP HLK QL INGRN+L + L QQM + PG P+ P
Sbjct: 59 GRCSREN--CKYLHPPTHLKTQLEINGRNNLIQQKTAAAMLAQQMQFMFPGTPLHP 112
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 10 STLNYGTFWILGRCNREKPPCKYFHPPQHLKDQL 43
+T+ +I GRC REK CKYFHPP HL+ ++
Sbjct: 213 NTVTVCMDYIKGRCMREK--CKYFHPPAHLQAKI 244
>sp|Q8C181|MBNL2_MOUSE Muscleblind-like protein 2 OS=Mus musculus GN=Mbnl2 PE=2 SV=2
Length = 373
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 21 GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNA----LLQQMG-LTPGQPMVP 71
GRC+RE CKY HPP HLK QL INGRN+L + L QQM + PG P+ P
Sbjct: 59 GRCSREN--CKYLHPPTHLKTQLEINGRNNLIQQKTAAAMLAQQMQFMFPGTPLHP 112
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 10 STLNYGTFWILGRCNREKPPCKYFHPPQHLKDQL 43
+T+ +I GRC REK CKYFHPP HL+ ++
Sbjct: 213 NTVTVCMDYIKGRCMREK--CKYFHPPAHLQAKI 244
>sp|Q5R4F5|MBNL2_PONAB Muscleblind-like protein 2 OS=Pongo abelii GN=MBNL2 PE=2 SV=2
Length = 373
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 21 GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNA----LLQQMG-LTPGQPMVP 71
GRC+RE CKY HPP HLK QL INGRN+L + L QQM + PG P+ P
Sbjct: 59 GRCSREN--CKYLHPPTHLKTQLEINGRNNLIQQKTAAAMLAQQMQFMFPGTPLHP 112
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 10 STLNYGTFWILGRCNREKPPCKYFHPPQHLKDQL 43
+T+ +I GRC REK CKYFHPP HL+ ++
Sbjct: 213 NTVTVCMDYIKGRCMREK--CKYFHPPAHLQAKI 244
>sp|Q5VZF2|MBNL2_HUMAN Muscleblind-like protein 2 OS=Homo sapiens GN=MBNL2 PE=1 SV=2
Length = 373
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 21 GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNA----LLQQMG-LTPGQPMVP 71
GRC+RE CKY HPP HLK QL INGRN+L + L QQM + PG P+ P
Sbjct: 59 GRCSREN--CKYLHPPTHLKTQLEINGRNNLIQQKTAAAMLAQQMQFMFPGTPLHP 112
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 10 STLNYGTFWILGRCNREKPPCKYFHPPQHLKDQL 43
+T+ +I GRC REK CKYFHPP HL+ ++
Sbjct: 213 NTVTVCMDYIKGRCMREK--CKYFHPPAHLQAKI 244
>sp|Q9NUK0|MBNL3_HUMAN Muscleblind-like protein 3 OS=Homo sapiens GN=MBNL3 PE=2 SV=2
Length = 354
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 39/81 (48%), Gaps = 19/81 (23%)
Query: 21 GRCNREKPPCKYFHPPQHLKDQLLINGRNH----------------LALKNALLQQMGLT 64
GRC RE CKY HPP HLK QL INGRN+ L L+NA + +G
Sbjct: 60 GRCTREN--CKYLHPPPHLKTQLEINGRNNLIQQKTAAAMFAQQMQLMLQNAQMSSLGSF 117
Query: 65 PGQPMVPGQIPAVVSAAFYPH 85
P P +P P + + PH
Sbjct: 118 PMTPSIPANPPMAFN-PYIPH 137
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 10 STLNYGTFWILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPG 66
+T+ +I GRC+REK CKYFHPP HL+ +L H + ++ M L PG
Sbjct: 211 NTVTICMDYIKGRCSREK--CKYFHPPAHLQARL---KAAHHQMNHSAASAMALQPG 262
>sp|Q6Q2B2|MBN2A_TAKRU Muscleblind-like protein 2a OS=Takifugu rubripes GN=mbnl2a PE=2
SV=1
Length = 351
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 28/45 (62%), Gaps = 6/45 (13%)
Query: 21 GRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNA----LLQQM 61
GRC RE CKY HPP HLK QL INGRN+L + L QQM
Sbjct: 59 GRCTREN--CKYLHPPAHLKTQLEINGRNNLIQQKTAAAMLAQQM 101
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 10 STLNYGTFWILGRCNREKPPCKYFHPPQHLKDQL 43
+T+ +I RC+REK CKYFHPP HL+ ++
Sbjct: 214 NTVTVCMDYIKSRCSREK--CKYFHPPAHLQAKV 245
>sp|Q8R003|MBNL3_MOUSE Muscleblind-like protein 3 OS=Mus musculus GN=Mbnl3 PE=2 SV=1
Length = 342
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
Query: 21 GRCNREKPPCKYFHPPQHLKDQLLINGRNHL 51
GRC RE CKY HPP HLK QL +NGRN+L
Sbjct: 60 GRCTREN--CKYLHPPPHLKSQLEVNGRNNL 88
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 42/109 (38%), Gaps = 44/109 (40%)
Query: 18 WILGRCNREKPPCKYFHPPQHLKDQL-----------------------LINGRNHL--- 51
+I GRC+REK CKYFHPP HL+ +L LI R+ L
Sbjct: 219 YIKGRCSREK--CKYFHPPPHLQAKLRAAHHQMNHSAANAMALPHGALQLIPKRSALDKA 276
Query: 52 ----------------ALKNALLQQMGLTPGQPMVPGQIPAVVSAAFYP 84
AL N + Q P PM+ G P+ VS A P
Sbjct: 277 NGATPVFNPSVFHCQQALANMQIPQQAFIPTVPMMHGATPSTVSTATPP 325
>sp|Q56V19|MBNL3_TAKRU Muscleblind-like protein 3 OS=Takifugu rubripes GN=mbnl3 PE=2
SV=1
Length = 323
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
Query: 21 GRCNREKPPCKYFHPPQHLKDQLLINGRNHL 51
GRC RE CKY HPP HLK QL INGRN+L
Sbjct: 59 GRCTREN--CKYLHPPPHLKTQLEINGRNNL 87
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 18 WILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKN 55
+I GRC+R+K CKYFHPP HL Q I H A +N
Sbjct: 222 YIKGRCSRDK--CKYFHPPAHL--QARIKASQHQASQN 255
>sp|A5ILG0|MUTS_THEP1 DNA mismatch repair protein MutS OS=Thermotoga petrophila (strain
RKU-1 / ATCC BAA-488 / DSM 13995) GN=mutS PE=3 SV=1
Length = 793
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 38 HLKDQLLINGRNHLALKNALLQQMGLTPGQPM-----VPGQIPAVVSAAFYPHWILFPTD 92
+LK LLI+ R+++ L +A ++ + L PG V + A WIL P
Sbjct: 237 NLKPPLLISQRDYMILDSATVENLSLIPGDRGKNLFDVLNNTETPMGARLLKKWILHPLV 296
Query: 93 DVASAIWRISCLKNLKSFESRNKEERKEELT 123
D R+ ++ L S + N EE ++ L+
Sbjct: 297 DRKQIEERLETVEKLVS-DRMNLEELRDLLS 326
>sp|Q9C857|GDL16_ARATH GDSL esterase/lipase At1g31550 OS=Arabidopsis thaliana GN=At1g31550
PE=2 SV=1
Length = 394
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 52 ALKNALLQQMGLTPGQPMVPGQIPAVVSAAFYPHWILFPTDDVASAIWRISCLKNLKSFE 111
+ +A+ + +G+ +VPG P S AF L T ++ CLK L F
Sbjct: 204 TISSAITELIGMGGRTFLVPGGFPLGCSVAF---LTLHQTSNMEEYDPLTGCLKWLNKFG 260
Query: 112 SRNKEERKEELTGYHKL 128
+ E+ +EEL KL
Sbjct: 261 EYHSEQLQEELNRLRKL 277
>sp|Q10051|PRP19_CAEEL Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans
GN=T10F2.4 PE=3 SV=2
Length = 492
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 71 PGQIPAVVSAAFYP--HWILFPTDDVASAIWRISCLKNLKSFESRNKE 116
PG AV S AF +++ ++D +W + LKNLK+F + K+
Sbjct: 377 PGHTAAVRSIAFSENGYYLATGSEDGEVKLWDLRKLKNLKTFANEEKQ 424
>sp|B3E6P2|MUTS_GEOLS DNA mismatch repair protein MutS OS=Geobacter lovleyi (strain ATCC
BAA-1151 / DSM 17278 / SZ) GN=mutS PE=3 SV=1
Length = 872
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 38 HLKDQLLINGRNHLALKNALLQQMGLT--------PGQPM-VPGQIPAVVSAAFYPHWIL 88
HL+D ++ +HLAL A + + LT G + + + A W+
Sbjct: 257 HLRDLTIVRQNDHLALDPATRRNLELTATMTDNKKSGSLLGCLDRTATAMGARTLKQWLS 316
Query: 89 FPTDDVASAIWRISCLKNLKSFESRNKEERKEELTGYHKL 128
+P VA R+ ++ LK + +++ +E+L G H L
Sbjct: 317 YPLVQVAPIRRRLEAVEELKENPAL-QDQLREQLKGVHDL 355
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,197,154
Number of Sequences: 539616
Number of extensions: 2001165
Number of successful extensions: 4075
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4017
Number of HSP's gapped (non-prelim): 64
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)