RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10364
(129 letters)
>gnl|CDD|185188 PRK15288, PRK15288, putative minor fimbrial subunit StfG;
Provisional.
Length = 176
Score = 30.4 bits (68), Expect = 0.17
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 44 LINGRNHLALKNALLQQMGLTPGQPMVPGQIPAVVSAAF 82
L+ G+N L+L NA +Q++ PG+ ++PG+ A A F
Sbjct: 139 LVTGKNTLSL-NAWVQRL---PGEDLIPGRFSASALATF 173
>gnl|CDD|147038 pfam04682, Herpes_BTRF1, Herpesvirus BTRF1 protein conserved
region. Herpesvirus protein.
Length = 256
Score = 29.6 bits (67), Expect = 0.34
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 38 HLKDQLLINGRNHLALKNALLQQMGL 63
L IN HL LK+ LL +MGL
Sbjct: 99 RFLPDLDINPLQHLFLKHVLLYRMGL 124
>gnl|CDD|216734 pfam01840, TCL1_MTCP1, TCL1/MTCP1 family. Two related oncogenes,
TCL-1 and MTCP-1, are overexpressed in T cell
prolymphocytic leukaemias as a result of chromosomal
rearrangements that involve the translocation of one T
cell receptor gene to either chromosome 14q32 or Xq28.
This family contains two repeated motifs that form a
single globular domain.
Length = 110
Score = 28.2 bits (63), Expect = 0.66
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 56 ALLQQMGLTPGQPMVPGQIPAVVSAAFYP-HWILFPTD---DVASAIWRI 101
L QM + G+P P Q+ + P W L+P + S WR+
Sbjct: 46 VHLWQMTVILGEPTPPSQLN----PSQLPTMWQLYPRNRYRGADSTYWRL 91
>gnl|CDD|223001 PHA03148, PHA03148, hypothetical protein; Provisional.
Length = 289
Score = 28.5 bits (64), Expect = 0.98
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 39 LKDQLLINGRNHLALKNALLQQMGL 63
L L IN HL LK+ LL+++GL
Sbjct: 133 LVPSLDINPLQHLFLKHVLLKRLGL 157
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 27.7 bits (62), Expect = 1.3
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 114 NKEERKEELTGYHK 127
+KE RKE LTG+HK
Sbjct: 16 DKEARKEYLTGFHK 29
>gnl|CDD|165586 PHA03342, PHA03342, US22 family homolog; Provisional.
Length = 511
Score = 27.3 bits (60), Expect = 2.8
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 93 DVASAIWRISCLKNL--KSFESRNKEERKEELTG 124
D + ++I LK L FE KE RKE+L G
Sbjct: 305 DNVAEFFQIGMLKRLFSSGFEFHAKERRKEKLEG 338
>gnl|CDD|235490 PRK05478, PRK05478, isopropylmalate isomerase large subunit;
Validated.
Length = 466
Score = 27.0 bits (61), Expect = 3.3
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 58 LQQMGLTPGQPM 69
L MGL PG P+
Sbjct: 323 LAYMGLKPGTPI 334
>gnl|CDD|182994 PRK11145, pflA, pyruvate formate lyase-activating enzyme 1;
Provisional.
Length = 246
Score = 26.5 bits (59), Expect = 4.1
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 91 TDDVASAIWRISCLKNLKSFESRNKEERKEELTGYHKLG 129
TDD SA +K++ + E K EL YH+LG
Sbjct: 175 TDDDDSAHRLGEFIKDMGNIE-------KIELLPYHELG 206
>gnl|CDD|215154 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase.
Length = 505
Score = 26.6 bits (59), Expect = 4.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 82 FYPHWILFPTDDV 94
F+P +I FP D V
Sbjct: 29 FHPGYIDFPADAV 41
>gnl|CDD|109889 pfam00851, Peptidase_C6, Helper component proteinase. This protein
is found in genome polyproteins of potyviruses.
Length = 453
Score = 26.1 bits (58), Expect = 5.7
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 13/52 (25%)
Query: 72 GQIPAVVSAAFYPHWILFPTDDVASAIWRISCLKNLKSFESRNKEERKEELT 123
G++ A++S A +P +I+C K +++++ +K+E KE L
Sbjct: 32 GEVAALLSQALFP-------------CGKITCKKCAQNYKNLSKDEIKERLR 70
>gnl|CDD|236379 PRK09104, PRK09104, hypothetical protein; Validated.
Length = 464
Score = 26.4 bits (59), Expect = 5.7
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 13/53 (24%)
Query: 50 HLALKNALLQQMGL------TPGQPMVPGQIPAVVSAA----FYPHWILFPTD 92
L A L +G TPG PMV A FY H+ + P D
Sbjct: 48 WLV---ADLASLGFEASVRDTPGHPMVVAHHEGPTGDAPHVLFYGHYDVQPVD 97
>gnl|CDD|235909 PRK07021, fliL, flagellar basal body-associated protein FliL;
Reviewed.
Length = 162
Score = 25.6 bits (57), Expect = 6.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 54 KNALLQQMGLTPGQPMVPGQIPAVVSAAFYPHWIL 88
K L ++ T QP+VPGQ P VV+ + +IL
Sbjct: 127 KQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAFIL 161
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 26.1 bits (57), Expect = 8.3
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 91 TDDVASAIWRISCLKNLKSFESRNKEERKEELTGYHK 127
+++ +++ + C KSFESR + R EEL+ + K
Sbjct: 482 INEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRK 518
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.447
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,668,080
Number of extensions: 573337
Number of successful extensions: 531
Number of sequences better than 10.0: 1
Number of HSP's gapped: 531
Number of HSP's successfully gapped: 20
Length of query: 129
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 43
Effective length of database: 7,123,158
Effective search space: 306295794
Effective search space used: 306295794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)