RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10364
(129 letters)
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain,
alternative splicing, metal- binding, nucleus,
RNA-binding, zinc, zinc-finger, metal binding; 2.70A
{Homo sapiens}
Length = 83
Score = 52.0 bits (124), Expect = 3e-10
Identities = 21/38 (55%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 17 FWILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALK 54
+ GRC+R CKY HPP HLK QL INGRN+L +
Sbjct: 48 DSLKGRCSR--ENCKYLHPPPHLKTQLEINGRNNLIQQ 83
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative
splicing, cytoplasm, metal-binding, nucleus,
RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Length = 89
Score = 44.4 bits (104), Expect = 3e-07
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 17 FWILGRCNREKPPCKYFHPPQHLKDQLLING 47
+ GRC+R CKY HPP HLK QL IN
Sbjct: 56 DSLKGRCSR--ENCKYLHPPTHLKTQLEINS 84
Score = 29.0 bits (64), Expect = 0.17
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 21 GRCNREKPPCKYFHPPQHLK 40
G C+R CK+ HPP+ +
Sbjct: 26 GTCSRSDEECKFAHPPKSCQ 45
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain,
alternative splicing, metal- binding, nucleus,
RNA-binding, zinc, zinc-finger, metal binding; 1.50A
{Homo sapiens} PDB: 3d2s_A
Length = 70
Score = 37.7 bits (87), Expect = 7e-05
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 16 TFWILGRCNREKPPCKYFHPPQHLKDQ 42
+I GRC+R CKYFHPP HL+ +
Sbjct: 46 MDYIKGRCSR--EKCKYFHPPAHLQAK 70
Score = 29.2 bits (65), Expect = 0.092
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 21 GRCNREKPPCKYFHPPQHLK 40
G CNR + C++ HP
Sbjct: 15 GNCNRGENDCRFAHPADSTM 34
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform
1, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 38.3 bits (88), Expect = 8e-05
Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 17 FWILGRCNREKPPCKYFHPPQHLKDQLL 44
+I GRC REK CKYFHPP HL+ ++
Sbjct: 61 DYIKGRCMREK--CKYFHPPAHLQAKIK 86
Score = 28.3 bits (62), Expect = 0.32
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 21 GRCNREKPPCKYFHPPQH 38
G C R + C++ HP
Sbjct: 29 GNCARGETDCRFAHPADS 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 3e-04
Identities = 20/137 (14%), Positives = 38/137 (27%), Gaps = 66/137 (48%)
Query: 9 LSTLNYGTFWI-LGRCNREK----------------------PPCKYFHPPQHLKDQL-- 43
+++ FW+ L CN + ++ +L
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 44 LINGRNHLALKNALLQQMGLTPGQPMVPGQIPAVVSAAFYPHWILFPTDDVASA-IWR-- 100
L+ + + +N LL +L +V +A W
Sbjct: 237 LLKSKPY---ENCLL----------------------------VL---LNVQNAKAWNAF 262
Query: 101 -ISCLKNLKSFESRNKE 116
+SC K L +R K+
Sbjct: 263 NLSC-KIL--LTTRFKQ 276
Score = 27.5 bits (60), Expect = 1.4
Identities = 20/115 (17%), Positives = 32/115 (27%), Gaps = 40/115 (34%)
Query: 41 DQLLINGRNHLALKNALLQQMGLTPGQ------------------------PMVPGQIPA 76
D L H++L + M LTP + P I
Sbjct: 279 DFLSAATTTHISLDH---HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 77 VVS--AAFYPHWILFPTDDVASAIWRISCLKNLKSFESRNKEERKEELTGYHKLG 129
+ A + +W D + + I S L L+ E R + +L
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTII--ESSLNVLEPAEYRKM---------FDRLS 379
Score = 27.5 bits (60), Expect = 1.4
Identities = 20/152 (13%), Positives = 45/152 (29%), Gaps = 49/152 (32%)
Query: 13 NYGTFWILGR----CNREKPPCKYF---HPPQHLKDQLLING-----RNHLALKNALLQQ 60
NY +++ + + + + +Q+ + +L L+ ALL+
Sbjct: 90 NYK--FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE- 146
Query: 61 MGLTPGQPMV----PG---QIPAVVSAAFYP---------HWILFPTDDVASAIWRISCL 104
L P + ++ G A+ Y W+ + + + L
Sbjct: 147 --LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV--LEML 202
Query: 105 KNL-----KSFESR---------NKEERKEEL 122
+ L ++ SR + EL
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.023
Identities = 25/132 (18%), Positives = 38/132 (28%), Gaps = 40/132 (30%)
Query: 3 RASTYYLSTLNYGTFWILGRCNREKPPCKYF-HPPQHLKDQLLINGRNHLALKNALLQQM 61
A + LN W+ N P Y P LI G LA + +
Sbjct: 204 DAEKVFTQGLNILE-WLENPSNT--PDKDYLLSIPISCP---LI-GVIQLAHYVVTAKLL 256
Query: 62 GLTPGQPMVP------GQIPAVVSAA----------FYPH---------WI------LFP 90
G TPG+ + G +V+A F+ +I +P
Sbjct: 257 GFTPGE-LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 91 TDDVASAIWRIS 102
+ +I S
Sbjct: 316 NTSLPPSILEDS 327
Score = 31.2 bits (70), Expect = 0.090
Identities = 27/144 (18%), Positives = 40/144 (27%), Gaps = 66/144 (45%)
Query: 1 MFRASTYYLSTLNYGTFWILG-RCNREKPPCKYFHPPQHLKD------------------ 41
F + ++ L F+I G RC P PP L+D
Sbjct: 292 FFVSVRKAITVL----FFI-GVRCYEAYPNTSL--PPSILEDSLENNEGVPSPMLSISNL 344
Query: 42 ---QL--------------------LINGRNHL-------ALK--NALLQQMGLTPG--Q 67
Q+ L+NG +L +L N L++ G Q
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ 404
Query: 68 PMVPG-QIPAVVSAAFYP-----H 85
+P + S F P H
Sbjct: 405 SRIPFSERKLKFSNRFLPVASPFH 428
>1a1x_A HMTCP-1; oncogene involved in T cell malignancies, proto-oncogene;
2.00A {Homo sapiens} SCOP: b.63.1.1 PDB: 1qtt_A 1qtu_A
Length = 108
Score = 27.3 bits (60), Expect = 0.85
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 56 ALLQQMGLTPGQPMVPGQIPAVVSAAFYPH-WILFPTD---DVASAIWRI 101
A +QQ+ + G P + + P W L+P + D S +W+I
Sbjct: 43 ARVQQIQVPLGDAARPSHLL----TSQLPLMWQLYPEERYMDNNSRLWQI 88
>1jnp_A T-cell leukemia/lymphoma protein 1A; beta barrel, dimer, immune
system; 2.50A {Mus musculus} SCOP: b.63.1.1
Length = 116
Score = 27.0 bits (59), Expect = 1.0
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 56 ALLQQMGLTPGQPMVPGQIPAVVSAAFYPH-WILFPTD---DVASAIWRI 101
+L+Q +T G+ M P Q+ P W L+P D S W+I
Sbjct: 47 VILRQEDVTLGEAMSPSQLV----PYELPLMWQLYPKDRYRSADSMYWQI 92
>1jsg_A Oncogene product P14TCL1; proto-oncogene, CL1 gene, T cell
leukemia, oncoprotein, microsome; 2.50A {Homo sapiens}
SCOP: b.63.1.1
Length = 114
Score = 27.0 bits (59), Expect = 1.2
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 57 LLQQMGLTPGQPMVPGQIPAVVSAAFYPH-WILFPTD---DVASAIWRI 101
LL++ + G+PM P QI + P W L+P S+ WR+
Sbjct: 50 LLRREDVVLGRPMTPTQIG----PSLLPIMWQLYPDGRYRSSDSSFWRL 94
>1v30_A Hypothetical UPF0131 protein PH0828; alpha+beta, structural
genomics, unknown function; HET: NHE; 1.40A {Pyrococcus
horikoshii} SCOP: d.269.1.1
Length = 124
Score = 27.1 bits (60), Expect = 1.2
Identities = 13/85 (15%), Positives = 20/85 (23%), Gaps = 8/85 (9%)
Query: 43 LLINGRNHLALKNALLQQMGLTPGQPMVPGQIPAVVSAAFYPHWILFPTDDVASAIWRIS 102
L H LK A G + +P V ++ D
Sbjct: 16 LRKGKPLHWYLKGAKFLGEDWIEGYQLYFEYLPYAVKGKGKLKVEVYEVDK--------E 67
Query: 103 CLKNLKSFESRNKEERKEELTGYHK 127
+ + E E T + K
Sbjct: 68 TFERINEIEIGTGYRLVEVSTKFGK 92
>1w4t_A Arylamine N-acetyltransferase; 5- aminosalicylic acid, NAT,
xenobiotic metabolism, acyltransferase; 1.95A
{Pseudomonas aeruginosa} SCOP: d.3.1.5
Length = 299
Score = 27.3 bits (60), Expect = 1.4
Identities = 9/46 (19%), Positives = 13/46 (28%)
Query: 7 YYLSTLNYGTFWILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLA 52
L L Y ++ R P HL +L + L
Sbjct: 102 RLLLALGYELELLVARVRWGLPDDAPLTQQSHLMLRLYLAEGEFLV 147
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification,
iron-sulfur cluster, RNA processing; 1.95A {Escherichia
coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Length = 433
Score = 26.7 bits (60), Expect = 2.7
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 11/55 (20%)
Query: 24 NREKPPCKYFH-----PPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMVPGQ 73
RE P C +F QH L K+A L ++ ++
Sbjct: 75 ERETPRCPHFGVCGGCQQQHASVDL------QQRSKSAALARLMKHDVSEVIADV 123
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle,
riken structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1
Length = 65
Score = 24.9 bits (54), Expect = 3.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 100 RISCLKNLKSFESRNKEERKEEL 122
R+S L+ L + RNK RK EL
Sbjct: 15 RVSELQVLLGYAGRNKHGRKHEL 37
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 25.7 bits (57), Expect = 5.5
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 39 LKDQLLINGRNH 50
+KD ++I G+NH
Sbjct: 457 IKDLIIIYGKNH 468
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 25.7 bits (57), Expect = 5.7
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 39 LKDQLLINGRNH 50
+KD ++I GRN
Sbjct: 460 IKDLIIIRGRNI 471
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4;
influenza A, nonstructural protein, viral protein: HOST
complex, Zn finger; 1.95A {Homo sapiens}
Length = 72
Score = 24.4 bits (53), Expect = 5.8
Identities = 5/24 (20%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 17 FWILGRCNREKPPCKYFHPPQHLK 40
+ G C+ ++ C + H K
Sbjct: 50 YSKFGECSNKE--CPFLHIDPESK 71
>1w5r_A Arylamine N-acetyltransferase; acyltransferase; 1.45A
{Mycobacterium smegmatis} SCOP: d.3.1.5 PDB: 1w6f_A*
1gx3_A
Length = 278
Score = 25.3 bits (55), Expect = 7.7
Identities = 11/68 (16%), Positives = 20/68 (29%)
Query: 7 YYLSTLNYGTFWILGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALLQQMGLTPG 66
Y L L + + GR + H + + G + L + LT
Sbjct: 82 YVLEELGFEVERLSGRVVWMRADDAPLPAQTHNVLSVAVPGADGRYLVDVGFGGQTLTSP 141
Query: 67 QPMVPGQI 74
+ G +
Sbjct: 142 IRLEAGPV 149
>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A
{Streptomyces galilaeus} SCOP: d.17.4.9
Length = 158
Score = 24.9 bits (54), Expect = 7.9
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 56 ALLQQMGLTPGQPMVPGQIPAVVSAAFYPH 85
LL ++G P P V + A ++AA H
Sbjct: 125 PLLVRLGKLPDVPKVVLEASAKLAAALEHH 154
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 24.9 bits (55), Expect = 8.8
Identities = 3/15 (20%), Positives = 4/15 (26%)
Query: 34 HPPQHLKDQLLINGR 48
+QL G
Sbjct: 146 TLLCKPYEQLKEGGI 160
>1oj8_A Ribonuclease, RC-rnase6 ribonuclease; cytotoxic ribonucleases,
anti-tumor activity, sialic binding and nucleotide
binding, hydrolase; 1.70A {Rana catesbeiana} SCOP:
d.5.1.1 PDB: 1oj1_A 1z5f_A*
Length = 105
Score = 24.5 bits (53), Expect = 8.9
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 23 CNREKPPCKY 32
CNR+K PC Y
Sbjct: 68 CNRKKLPCHY 77
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 24.9 bits (55), Expect = 9.4
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 34 HPPQHLKDQLLINGR 48
P L +QL GR
Sbjct: 175 DTPTELINQLASGGR 189
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin
dependent protein kinase, Mg synaptic plasticity,
pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB:
3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Length = 351
Score = 25.0 bits (55), Expect = 9.5
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 86 WILFPTDDVASAIWRISCLKNLKSFESRNK 115
W+ D A I ++ L+ F +R K
Sbjct: 289 WLK-ERDRYAYKIHLPETVEQLRKFNARRK 317
>2xvl_A Alpha-xylosidase, putative, XYL31A; hydrolase, glycosyl hydrolase
family 31, (beta/alpha)8 barre; HET: PXN; 2.30A
{Cellvibrio japonicus} PDB: 2xvg_A* 2xvk_A*
Length = 1020
Score = 24.9 bits (54), Expect = 9.8
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 1 MFRASTYYLSTLNYGTFWILGRCNREKPPCKY 32
+ + + +S+ NYG W R P +
Sbjct: 207 LVISIPFLVSSRNYGLLWDNNSITRFGDPREA 238
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.447
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,009,418
Number of extensions: 104666
Number of successful extensions: 274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 48
Length of query: 129
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,384,350
Effective search space: 201680100
Effective search space used: 201680100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.8 bits)