RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10364
         (129 letters)



>d1a1xa_ b.63.1.1 (A:) p13-MTCP1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 106

 Score = 27.9 bits (62), Expect = 0.16
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 55  NALLQQMGLTPGQPMVPGQIPAVVSAAFYPHWILFPTD---DVASAIWRI 101
            A +QQ+ +  G    P  +    ++     W L+P +   D  S +W+I
Sbjct: 40  RARVQQIQVPLGDAARPSHLL---TSQLPLMWQLYPEERYMDNNSRLWQI 86


>d1v30a_ d.269.1.1 (A:) Hypothetical protein PH0828 {Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 118

 Score = 27.2 bits (60), Expect = 0.33
 Identities = 12/81 (14%), Positives = 18/81 (22%), Gaps = 8/81 (9%)

Query: 43  LLINGRNHLALKNALLQQMGLTPGQPMVPGQIPAVVSAAFYPHWILFPTDDVASAIWRIS 102
           L      H  LK A         G  +    +P  V         ++  D          
Sbjct: 10  LRKGKPLHWYLKGAKFLGEDWIEGYQLYFEYLPYAVKGKGKLKVEVYEVDK--------E 61

Query: 103 CLKNLKSFESRNKEERKEELT 123
             + +   E        E  T
Sbjct: 62  TFERINEIEIGTGYRLVEVST 82


>d1jsga_ b.63.1.1 (A:) p14-TCL1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 111

 Score = 27.2 bits (60), Expect = 0.33
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 55  NALLQQMGLTPGQPMVPGQIPAVVSAAFYPHWILFPTD---DVASAIWRI 101
             LL++  +  G+PM P QI     +     W L+P        S+ WR+
Sbjct: 45  RVLLRREDVVLGRPMTPTQIG---PSLLPIMWQLYPDGRYRSSDSSFWRL 91


>d1jnpa_ b.63.1.1 (A:) p14-TCL1 {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 101

 Score = 26.8 bits (59), Expect = 0.43
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 56  ALLQQMGLTPGQPMVPGQIPAVVSAAFYPHWILFPTD---DVASAIWRI 101
            +L+Q  +T G+ M P Q+           W L+P D      S  W+I
Sbjct: 40  VILRQEDVTLGEAMSPSQLV---PYELPLMWQLYPKDRYRSADSMYWQI 85


>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 66

 Score = 25.8 bits (57), Expect = 0.51
 Identities = 6/32 (18%), Positives = 12/32 (37%)

Query: 67 QPMVPGQIPAVVSAAFYPHWILFPTDDVASAI 98
           P+    I   V + F    +L  ++D+    
Sbjct: 24 SPLSTNGIGIFVVSTFDGDHLLVRSNDLEKTA 55


>d1zvpa2 d.58.18.9 (A:68-131) Hypothetical protein VC0802 {Vibrio
           cholerae [TaxId: 666]}
          Length = 64

 Score = 24.7 bits (54), Expect = 1.5
 Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 5/52 (9%)

Query: 58  LQQMGLTPG--QPMVPGQIPAVVSAAFYPHWILFPTDDVASAIWRISCLKNL 107
           L+ +GLT      +    I A V A +Y   I    +    A   +  L   
Sbjct: 14  LEAVGLTAAFATKLAEHGISANVIAGYYHDHIFVQKEKAQQA---LQALGEF 62


>d1v66a_ a.140.2.1 (A:) p53 binding domain of protein inhibitor of
           activated STAT protein 1, PIAS-1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 65

 Score = 23.6 bits (51), Expect = 3.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 100 RISCLKNLKSFESRNKEERKEEL 122
           R+S L+ L  +  RNK  RK EL
Sbjct: 15  RVSELQVLLGYAGRNKHGRKHEL 37


>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second
           domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 115

 Score = 23.9 bits (52), Expect = 5.1
 Identities = 10/27 (37%), Positives = 11/27 (40%)

Query: 9   LSTLNYGTFWILGRCNREKPPCKYFHP 35
           LS  N   F  L R   E P   +F P
Sbjct: 88  LSLDNLARFVHLCREFMEAPSLGFFKP 114


>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase
          RumA, catalytic domain {Escherichia coli [TaxId: 562]}
          Length = 358

 Score = 24.2 bits (51), Expect = 6.3
 Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 11/53 (20%)

Query: 25 REKPPCKYFH-----PPQHLKDQLLINGRNHLALKNALLQQMGLTPGQPMVPG 72
          RE P C +F        QH    L          K+A L ++       ++  
Sbjct: 2  RETPRCPHFGVCGGCQQQHASVDL------QQRSKSAALARLMKHDVSEVIAD 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.447 

Gapped
Lambda     K      H
   0.267   0.0692    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 508,509
Number of extensions: 21294
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 11
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.3 bits)