BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10366
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PK8|A Chain A, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|B Chain B, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|C Chain C, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|D Chain D, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|E Chain E, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|F Chain F, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|G Chain G, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|H Chain H, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PX2|A Chain A, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp (Form 1)
pdb|1PX2|B Chain B, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp (Form 1)
Length = 422
Score = 303 bits (775), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 135/218 (61%), Positives = 175/218 (80%), Gaps = 5/218 (2%)
Query: 8 DHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK 67
D+++L++G GIPS+N+L VYNF DKPWVFA +++L +KLG E FPLID T+YPN K
Sbjct: 198 DYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHK 257
Query: 68 EM-----YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHV 122
EM YPVV K+GHAHSG GKV+V++ DFQD+A VVA+ TY T EP+ID+K+DV V
Sbjct: 258 EMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRV 317
Query: 123 QKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIV 182
QKIG NYKA+ R S+SGNWKTNTGSAMLEQI M+D YKLW+D +E+FGGLDICA+E +
Sbjct: 318 QKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALH 377
Query: 183 GKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKM 220
GKDG++HIIEV S++ L+G+ Q+ED++ IV+LV+ KM
Sbjct: 378 GKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKM 415
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 28/33 (84%)
Query: 247 DGKEHIIEVNDSALSLMGETQEEDRRFIVDLVI 279
DG++HIIEV S++ L+G+ Q+ED++ IV+LV+
Sbjct: 380 DGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVV 412
>pdb|1AUX|A Chain A, Structure Of The C Domain Of Synapsin Ia From Bovine Brain
With Calcium Atp-Gamma-S Bound
pdb|1AUX|B Chain B, Structure Of The C Domain Of Synapsin Ia From Bovine Brain
With Calcium Atp-Gamma-S Bound
Length = 311
Score = 303 bits (775), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 135/218 (61%), Positives = 176/218 (80%), Gaps = 5/218 (2%)
Query: 8 DHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK 67
D+++L++G GIPSIN+L VYNF DKPWVFA +++L +KLG E FPLI+ T+YPN K
Sbjct: 88 DYRSLVIGLQYAGIPSINSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLINQTFYPNHK 147
Query: 68 EM-----YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHV 122
EM YPVV K+GHAHSG GKV+V++ DFQD+A VVA+ TY TTEP+ID+K+DV +
Sbjct: 148 EMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATTEPFIDAKYDVRI 207
Query: 123 QKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIV 182
QKIG NYKA+ R S+SGNWKTNTGSAMLEQI M+D YKLW+D +E+FGGLDICA+E +
Sbjct: 208 QKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALH 267
Query: 183 GKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKM 220
GKDG++HIIEV S++ L+G+ Q+ED++ IV+LV+ KM
Sbjct: 268 GKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKM 305
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 28/33 (84%)
Query: 247 DGKEHIIEVNDSALSLMGETQEEDRRFIVDLVI 279
DG++HIIEV S++ L+G+ Q+ED++ IV+LV+
Sbjct: 270 DGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVV 302
>pdb|1I7L|A Chain A, Crystal Structure Analysis Of The Complex Of The C Domain
Of Synapsin Ii From Rat With Atp
pdb|1I7L|B Chain B, Crystal Structure Analysis Of The Complex Of The C Domain
Of Synapsin Ii From Rat With Atp
pdb|1I7N|A Chain A, Crystal Structure Analysis Of The C Domain Of Synapsin Ii
From Rat Brain
pdb|1I7N|B Chain B, Crystal Structure Analysis Of The C Domain Of Synapsin Ii
From Rat Brain
Length = 309
Score = 295 bits (755), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 133/219 (60%), Positives = 173/219 (78%), Gaps = 5/219 (2%)
Query: 7 QDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF 66
+D ++L++G G+PSIN+L+ +YNF DKPWVFA ++ + + LG E FPLI+ TYYPN
Sbjct: 85 EDFRHLVIGMQYAGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNH 144
Query: 67 KEM-----YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVH 121
+EM +PVV KIGHAHSG GKV+VE++ DFQD+A VVA+ TY T EP+ID+K+D+
Sbjct: 145 REMLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTYATAEPFIDAKYDIR 204
Query: 122 VQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEII 181
VQKIG+NYKA+ R SISGNWKTNTGSAMLEQI M+D YKLW+D +E+FGGLDICA++ +
Sbjct: 205 VQKIGNNYKAYMRTSISGNWKTNTGSAMLEQIAMSDRYKLWVDACSEMFGGLDICAVKAV 264
Query: 182 VGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKM 220
GKDGK++I EV D ++ L+GE Q EDR+ I DLVI KM
Sbjct: 265 HGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKM 303
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 247 DGKEHIIEVNDSALSLMGETQEEDRRFIVDLVI 279
DGK++I EV D ++ L+GE Q EDR+ I DLVI
Sbjct: 268 DGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVI 300
>pdb|1AUV|A Chain A, Structure Of The C Domain Of Synapsin Ia From Bovine Brain
pdb|1AUV|B Chain B, Structure Of The C Domain Of Synapsin Ia From Bovine Brain
Length = 311
Score = 288 bits (737), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 131/217 (60%), Positives = 169/217 (77%), Gaps = 5/217 (2%)
Query: 8 DHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK 67
D+++L++G GIPSIN+L VYNF DKPWVFA ++L +KLG E FPLI+ T+YPN K
Sbjct: 88 DYRSLVIGLQYAGIPSINSLHSVYNFCDKPWVFAQXVRLHKKLGTEEFPLINQTFYPNHK 147
Query: 68 E-----MYPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHV 122
E YPVV K GHAHSG GKV+V++ DFQD+A VVA+ TY TTEP+ID+K+DV +
Sbjct: 148 EXLSSTTYPVVVKXGHAHSGXGKVKVDNQHDFQDIASVVALTKTYATTEPFIDAKYDVRI 207
Query: 123 QKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIV 182
QKIG NYKA+ R S+SGNWKTNTGSA LEQI +D YKLW+D +E+FGGLDICA+E +
Sbjct: 208 QKIGQNYKAYXRTSVSGNWKTNTGSAXLEQIAXSDRYKLWVDTCSEIFGGLDICAVEALH 267
Query: 183 GKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQK 219
GKDG++HIIEV S+ L+G+ Q+ED++ IV+LV+ K
Sbjct: 268 GKDGRDHIIEVVGSSXPLIGDHQDEDKQLIVELVVNK 304
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 27/33 (81%)
Query: 247 DGKEHIIEVNDSALSLMGETQEEDRRFIVDLVI 279
DG++HIIEV S+ L+G+ Q+ED++ IV+LV+
Sbjct: 270 DGRDHIIEVVGSSXPLIGDHQDEDKQLIVELVV 302
>pdb|2P0A|A Chain A, The Crystal Structure Of Human Synapsin Iii (Syn3) In
Complex With Amppnp
pdb|2P0A|B Chain B, The Crystal Structure Of Human Synapsin Iii (Syn3) In
Complex With Amppnp
Length = 344
Score = 283 bits (725), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 123/224 (54%), Positives = 173/224 (77%), Gaps = 5/224 (2%)
Query: 2 SYVIKQDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDIT 61
S + +D+++L++G GG+P++N+L VYNF KPWVF+ L+++ LG E FPL++ T
Sbjct: 97 SMALGEDYRSLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQT 156
Query: 62 YYPNFKEM-----YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDS 116
++PN K M +PVV K+GHAH+G GK++VE+ DFQD+ VVA+A TY TTE +IDS
Sbjct: 157 FFPNHKPMVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTYATTEAFIDS 216
Query: 117 KFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDIC 176
K+D+ +QKIGSNYKA+ R SISGNWK NTGSAMLEQ+ MT+ Y+LW+D +E+FGGLDIC
Sbjct: 217 KYDIRIQKIGSNYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDSCSEMFGGLDIC 276
Query: 177 ALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKM 220
A++ + KDG+++IIEV DS++ L+GE EEDR+ + DLV+ KM
Sbjct: 277 AVKAVHSKDGRDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKM 320
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 246 NDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVI 279
DG+++IIEV DS++ L+GE EEDR+ + DLV+
Sbjct: 284 KDGRDYIIEVMDSSMPLIGEHVEEDRQLMADLVV 317
>pdb|3A5V|A Chain A, Crystal Structure Of Alpha-Galactosidase I From
Mortierella Vinacea
Length = 397
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 26/168 (15%)
Query: 108 CTTEPYIDSKFDVHVQKIGSNYKAFQRKSISGNWK----TNTGSAMLEQIPMTDHYKLWI 163
CTT + + F V I + A +K+ SG W G+ + Q HY +W
Sbjct: 203 CTTYDCVLAGFRCSVMNIINKAVAVSQKARSGGWNDLDMLEVGNGGMNQEEYRVHYTIWA 262
Query: 164 DEVAELFGGLDICAL-----EIIVGKDGKEHIIEVN-DSALSLMGETQ-EEDRRFIVDLV 216
+ L G D+ + EII+ K+ +I VN DS+ S + D++ +
Sbjct: 263 ALKSPLILGNDVTNITNTTKEIIMNKE----VIAVNQDSSFSPANRIWVKGDQQLFSGNL 318
Query: 217 IQKMQVSVLVPPDIESTIEVRKVEKTY-------IPNDGKEHIIEVND 257
QV +L + + K+ T+ +PN IEV D
Sbjct: 319 ANNTQVVIL----LNAGDSAAKMTATWDDIWVYNLPNVDSSRSIEVRD 362
>pdb|3D19|A Chain A, Crystal Structure Of A Conserved Metalloprotein From
Bacillus Cereus
pdb|3D19|B Chain B, Crystal Structure Of A Conserved Metalloprotein From
Bacillus Cereus
pdb|3D19|C Chain C, Crystal Structure Of A Conserved Metalloprotein From
Bacillus Cereus
pdb|3D19|D Chain D, Crystal Structure Of A Conserved Metalloprotein From
Bacillus Cereus
pdb|3D19|E Chain E, Crystal Structure Of A Conserved Metalloprotein From
Bacillus Cereus
pdb|3D19|F Chain F, Crystal Structure Of A Conserved Metalloprotein From
Bacillus Cereus
Length = 283
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 89 ESNQDFQDMAGVVAVANTYCT-TEPYIDSKFDVHVQKIGSNYKAFQRKSISGNWKTNTGS 147
E+NQ ++ + +A++Y T+P +F+ VQ+ +N F+RK + G
Sbjct: 48 EANQFYRLFEHIEQIAHSYTNETDPEQIKRFNAEVQQAATNIWGFKRKIL--------GL 99
Query: 148 AMLEQIPMTDHYKLWIDEVA 167
+ ++P +++ L +D +
Sbjct: 100 ILTCKLPGQNNFPLLVDHTS 119
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 28.5 bits (62), Expect = 5.8, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 151 EQIPMTDHYKLWIDEVAELFGGLDICAL-EIIVGKDGKE--HIIEVNDSAL 198
EQ P D YKL +DE+ ++ ++ A+ +++ K+GKE ++ N +A+
Sbjct: 45 EQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAI 95
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 28.5 bits (62), Expect = 5.8, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 151 EQIPMTDHYKLWIDEVAELFGGLDICAL-EIIVGKDGKE--HIIEVNDSAL 198
EQ P D YKL +DE+ ++ ++ A+ +++ K+GKE ++ N +A+
Sbjct: 51 EQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAI 101
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 28.1 bits (61), Expect = 6.9, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 151 EQIPMTDHYKLWIDEVAELFGGLDICAL-EIIVGKDGKE--HIIEVNDSAL 198
EQ P D YKL +DE+ ++ ++ A+ +++ K+GKE ++ N +A+
Sbjct: 51 EQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAI 101
>pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
Length = 503
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 171 GGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLV 226
GG+D L +++ K G +H+ D L +GE +E V+ ++ + V++LV
Sbjct: 218 GGVDSSTLALLLAKAGVDHLAVFVDHGLLRLGEREE------VEGALRALGVNLLV 267
>pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
Length = 503
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 171 GGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLV 226
GG+D L +++ K G +H+ D L +GE +E V+ ++ + V++LV
Sbjct: 218 GGVDSSTLALLLAKAGVDHLAVFVDHGLLRLGEREE------VEGALRALGVNLLV 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,443,501
Number of Sequences: 62578
Number of extensions: 385840
Number of successful extensions: 1010
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 993
Number of HSP's gapped (non-prelim): 23
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)