BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10366
(340 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O88935|SYN1_MOUSE Synapsin-1 OS=Mus musculus GN=Syn1 PE=1 SV=2
Length = 706
Score = 310 bits (793), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 143/267 (53%), Positives = 193/267 (72%), Gaps = 17/267 (6%)
Query: 8 DHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK 67
D+++L++G GIPS+N+L VYNF DKPWVFA +++L +KLG E FPLID T+YPN K
Sbjct: 197 DYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHK 256
Query: 68 EM-----YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHV 122
EM YPVV K+GHAHSG GKV+V++ DFQD+A VVA+ TY T EP+ID+K+DV V
Sbjct: 257 EMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRV 316
Query: 123 QKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIV 182
QKIG NYKA+ R S+SGNWKTNTGSAMLEQI M+D YKLW+D +E+FGGLDICA+E +
Sbjct: 317 QKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALH 376
Query: 183 GKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLVPPDIESTIEVRKVEKT 242
GKDG++HIIEV S++ L+G+ Q+ED++ IV+LV+ KM ++ R+ ++
Sbjct: 377 GKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQAL-----------PRQPQRD 425
Query: 243 YIPNDGKEHIIEVNDSALSLMGETQEE 269
P G H + AL+L +T ++
Sbjct: 426 ASPGRG-SHSQSSSPGALTLGRQTSQQ 451
>sp|P17600|SYN1_HUMAN Synapsin-1 OS=Homo sapiens GN=SYN1 PE=1 SV=3
Length = 705
Score = 309 bits (791), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 135/218 (61%), Positives = 175/218 (80%), Gaps = 5/218 (2%)
Query: 8 DHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK 67
D+++L++G GIPS+N+L VYNF DKPWVFA +++L +KLG E FPLID T+YPN K
Sbjct: 197 DYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHK 256
Query: 68 EM-----YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHV 122
EM YPVV K+GHAHSG GKV+V++ DFQD+A VVA+ TY T EP+ID+K+DV V
Sbjct: 257 EMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRV 316
Query: 123 QKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIV 182
QKIG NYKA+ R S+SGNWKTNTGSAMLEQI M+D YKLW+D +E+FGGLDICA+E +
Sbjct: 317 QKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALH 376
Query: 183 GKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKM 220
GKDG++HIIEV S++ L+G+ Q+ED++ IV+LV+ KM
Sbjct: 377 GKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKM 414
>sp|P09951|SYN1_RAT Synapsin-1 OS=Rattus norvegicus GN=Syn1 PE=1 SV=3
Length = 704
Score = 308 bits (789), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 135/218 (61%), Positives = 175/218 (80%), Gaps = 5/218 (2%)
Query: 8 DHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK 67
D+++L++G GIPS+N+L VYNF DKPWVFA +++L +KLG E FPLID T+YPN K
Sbjct: 197 DYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHK 256
Query: 68 EM-----YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHV 122
EM YPVV K+GHAHSG GKV+V++ DFQD+A VVA+ TY T EP+ID+K+DV V
Sbjct: 257 EMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRV 316
Query: 123 QKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIV 182
QKIG NYKA+ R S+SGNWKTNTGSAMLEQI M+D YKLW+D +E+FGGLDICA+E +
Sbjct: 317 QKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALH 376
Query: 183 GKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKM 220
GKDG++HIIEV S++ L+G+ Q+ED++ IV+LV+ KM
Sbjct: 377 GKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKM 414
>sp|P17599|SYN1_BOVIN Synapsin-1 OS=Bos taurus GN=SYN1 PE=1 SV=2
Length = 706
Score = 308 bits (789), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 134/218 (61%), Positives = 176/218 (80%), Gaps = 5/218 (2%)
Query: 8 DHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK 67
D+++L++G GIPSIN+L VYNF DKPWVFA +++L +KLG E FPLI+ T+YPN K
Sbjct: 197 DYRSLVIGLQYAGIPSINSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLINQTFYPNHK 256
Query: 68 EM-----YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHV 122
EM YPVV K+GHAHSG GKV+V++ DFQD+A VVA+ TY TTEP+ID+K+DV +
Sbjct: 257 EMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATTEPFIDAKYDVRI 316
Query: 123 QKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIV 182
QKIG NYKA+ R S+SGNWKTNTGSAMLEQI M+D YKLW+D +E+FGGLDICA+E +
Sbjct: 317 QKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALH 376
Query: 183 GKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKM 220
GKDG++HII+V S++ L+G+ Q+ED++ IV+LV+ KM
Sbjct: 377 GKDGRDHIIQVVGSSMPLIGDHQDEDKQLIVELVVNKM 414
>sp|Q24546|SYN_DROME Synapsin OS=Drosophila melanogaster GN=Syn PE=1 SV=2
Length = 1025
Score = 301 bits (771), Expect = 4e-81, Method: Composition-based stats.
Identities = 164/371 (44%), Positives = 224/371 (60%), Gaps = 42/371 (11%)
Query: 8 DHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK 67
D+++ +LG GG+PSIN+L +Y FQDKPWVF+HLLQLQR+LG++ FPLI+ T++PN +
Sbjct: 215 DYRSTILGLKYGGVPSINSLHSIYQFQDKPWVFSHLLQLQRRLGRDGFPLIEQTFFPNPR 274
Query: 68 EMY-----PVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVA----NTYCTTEPYIDSKF 118
+++ P V K GH H G R+E+ QD AG+V+ A + YCT EPYID+KF
Sbjct: 275 DLFQFTKFPSVLKAGHCHGGVATARLENQSALQDAAGLVSGAGNDSHCYCTIEPYIDAKF 334
Query: 119 DVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICAL 178
VH+QKIG+NYKAF RKSI+GNWKTN GSAMLEQI +T+ YK W+DE++ELFGG+++C L
Sbjct: 335 SVHIQKIGNNYKAFMRKSITGNWKTNQGSAMLEQITLTEKYKSWVDEISELFGGMEVCGL 394
Query: 179 EIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLVPPDIE------- 231
++V KDG+E+II DS +L+G+TQEEDRR I DLV +MQ +V P +
Sbjct: 395 SVVVAKDGREYIISACDSTFALIGDTQEEDRRQIADLVSGRMQ-NVCRPSMAQTGPGKLP 453
Query: 232 --STIEVRKVEKT---------------YIPNDGKEHIIEVNDSALSLMGETQEEDRRFI 274
S++ R T P G I E A+ +G R
Sbjct: 454 SRSSVSSRAESPTDEGVAPTPPLPAGPRPAPMGGPPPIPERTSPAVGSIGRLSS---RSS 510
Query: 275 VDLVIQKMQSSTMSSM-----SQPSAAQQRANFGRQSSQQSVTSTAGQIGEDSEDTMKNL 329
+ V ++ SS S++ ++ + + Q T + ED+EDTMKNL
Sbjct: 511 ISEVPEEPSSSGPSTVGGVRRDSQTSQSSTISSSVSRAGQRPPQTQNSVVEDAEDTMKNL 570
Query: 330 RKTFAGIFGDM 340
RKTFAGIFGDM
Sbjct: 571 RKTFAGIFGDM 581
>sp|Q92777|SYN2_HUMAN Synapsin-2 OS=Homo sapiens GN=SYN2 PE=1 SV=3
Length = 582
Score = 301 bits (771), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 135/219 (61%), Positives = 173/219 (78%), Gaps = 5/219 (2%)
Query: 7 QDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF 66
+D ++L++G G+PSIN+L+ +YNF DKPWVFA L+ + + LG E FPLI+ TYYPN
Sbjct: 196 EDFRHLIIGMQYAGLPSINSLESIYNFCDKPWVFAQLVAIYKTLGGEKFPLIEQTYYPNH 255
Query: 67 KEM-----YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVH 121
KEM +PVV KIGHAHSG GKV+VE++ DFQD+A VVA+ TY T EP+IDSK+D+
Sbjct: 256 KEMLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTYATAEPFIDSKYDIR 315
Query: 122 VQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEII 181
VQKIG+NYKA+ R SISGNWKTNTGSAMLEQI M+D YKLW+D +E+FGGLDICA++ +
Sbjct: 316 VQKIGNNYKAYMRTSISGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEMFGGLDICAVKAV 375
Query: 182 VGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKM 220
GKDGK++I EV D ++ L+GE Q EDR+ I +LVI KM
Sbjct: 376 HGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITELVISKM 414
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 247 DGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKM 282
DGK++I EV D ++ L+GE Q EDR+ I +LVI KM
Sbjct: 379 DGKDYIFEVMDCSMPLIGEHQVEDRQLITELVISKM 414
>sp|Q63537|SYN2_RAT Synapsin-2 OS=Rattus norvegicus GN=Syn2 PE=1 SV=1
Length = 586
Score = 300 bits (767), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 133/219 (60%), Positives = 173/219 (78%), Gaps = 5/219 (2%)
Query: 7 QDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF 66
+D ++L++G G+PSIN+L+ +YNF DKPWVFA ++ + + LG E FPLI+ TYYPN
Sbjct: 197 EDFRHLVIGMQYAGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNH 256
Query: 67 KEM-----YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVH 121
+EM +PVV KIGHAHSG GKV+VE++ DFQD+A VVA+ TY T EP+ID+K+D+
Sbjct: 257 REMLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTYATAEPFIDAKYDIR 316
Query: 122 VQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEII 181
VQKIG+NYKA+ R SISGNWKTNTGSAMLEQI M+D YKLW+D +E+FGGLDICA++ +
Sbjct: 317 VQKIGNNYKAYMRTSISGNWKTNTGSAMLEQIAMSDRYKLWVDACSEMFGGLDICAVKAV 376
Query: 182 VGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKM 220
GKDGK++I EV D ++ L+GE Q EDR+ I DLVI KM
Sbjct: 377 HGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKM 415
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 27/36 (75%)
Query: 247 DGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKM 282
DGK++I EV D ++ L+GE Q EDR+ I DLVI KM
Sbjct: 380 DGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKM 415
>sp|Q64332|SYN2_MOUSE Synapsin-2 OS=Mus musculus GN=Syn2 PE=1 SV=2
Length = 586
Score = 300 bits (767), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 133/219 (60%), Positives = 173/219 (78%), Gaps = 5/219 (2%)
Query: 7 QDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF 66
+D ++L++G G+PSIN+L+ +YNF DKPWVFA ++ + + LG E FPLI+ TYYPN
Sbjct: 197 EDFRHLVIGMQYAGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNH 256
Query: 67 KEM-----YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVH 121
+EM +PVV KIGHAHSG GKV+VE++ DFQD+A VVA+ TY T EP+ID+K+D+
Sbjct: 257 REMLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTYATAEPFIDAKYDIR 316
Query: 122 VQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEII 181
VQKIG+NYKA+ R SISGNWKTNTGSAMLEQI M+D YKLW+D +E+FGGLDICA++ +
Sbjct: 317 VQKIGNNYKAYMRTSISGNWKTNTGSAMLEQIAMSDRYKLWVDACSEMFGGLDICAVKAV 376
Query: 182 VGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKM 220
GKDGK++I EV D ++ L+GE Q EDR+ I DLVI KM
Sbjct: 377 HGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKM 415
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 27/36 (75%)
Query: 247 DGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKM 282
DGK++I EV D ++ L+GE Q EDR+ I DLVI KM
Sbjct: 380 DGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKM 415
>sp|O14994|SYN3_HUMAN Synapsin-3 OS=Homo sapiens GN=SYN3 PE=1 SV=2
Length = 580
Score = 288 bits (738), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 123/224 (54%), Positives = 173/224 (77%), Gaps = 5/224 (2%)
Query: 2 SYVIKQDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDIT 61
S + +D+++L++G GG+P++N+L VYNF KPWVF+ L+++ LG E FPL++ T
Sbjct: 170 SMALGEDYRSLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQT 229
Query: 62 YYPNFKEM-----YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDS 116
++PN K M +PVV K+GHAH+G GK++VE+ DFQD+ VVA+A TY TTE +IDS
Sbjct: 230 FFPNHKPMVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTYATTEAFIDS 289
Query: 117 KFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDIC 176
K+D+ +QKIGSNYKA+ R SISGNWK NTGSAMLEQ+ MT+ Y+LW+D +E+FGGLDIC
Sbjct: 290 KYDIRIQKIGSNYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDSCSEMFGGLDIC 349
Query: 177 ALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKM 220
A++ + KDG+++IIEV DS++ L+GE EEDR+ + DLV+ KM
Sbjct: 350 AVKAVHSKDGRDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKM 393
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 247 DGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQSSTMSSMSQPS 294
DG+++IIEV DS++ L+GE EEDR+ + DLV+ KM M + PS
Sbjct: 358 DGRDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQLPMPGGTAPS 405
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 312 TSTAGQIGEDSED-----TMKNLRKTFAGIFGD 339
TS Q G SED T++NLRK+FA +F D
Sbjct: 548 TSDTSQRGTPSEDEAKAETIRNLRKSFASLFSD 580
>sp|Q8JZP2|SYN3_MOUSE Synapsin-3 OS=Mus musculus GN=Syn3 PE=1 SV=2
Length = 579
Score = 288 bits (737), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 124/231 (53%), Positives = 177/231 (76%), Gaps = 6/231 (2%)
Query: 2 SYVIKQDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDIT 61
S + +D+++L++G GG+P++N+L VYNF KPWVF+ L+++ LG E FPL++ T
Sbjct: 169 SMALAEDYRSLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQT 228
Query: 62 YYPNFKEM-----YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDS 116
++PN K M +PVV K+GHAH+G GK++VE+ D+QD+ VVA+A TY TTE +IDS
Sbjct: 229 FFPNHKPMLTAPNFPVVIKLGHAHAGMGKIKVENQHDYQDITSVVAMAKTYATTEAFIDS 288
Query: 117 KFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDIC 176
K+D+ +QKIGSNYKA+ R SISGNWK NTGSAMLEQ+ MT+ Y+LW+D +E+FGGLDIC
Sbjct: 289 KYDIRIQKIGSNYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDSCSEMFGGLDIC 348
Query: 177 ALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLVP 227
A++ + KDG+++IIEV DS++ L+GE EED++ + DLV+ KM +LVP
Sbjct: 349 AVKAVHSKDGRDYIIEVMDSSMPLIGEHVEEDKQLMADLVVSKMS-QLLVP 398
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 247 DGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQSSTMSSMSQPSAAQQRANFGRQS 306
DG+++IIEV DS++ L+GE EED++ + DLV+ KM + + PS + +G Q
Sbjct: 357 DGRDYIIEVMDSSMPLIGEHVEEDKQLMADLVVSKMSQLLVPGATVPSPLRP---WGPQ- 412
Query: 307 SQQSVTSTAGQIG 319
++ + + GQ+G
Sbjct: 413 TKPAKSPGQGQLG 425
>sp|O70441|SYN3_RAT Synapsin-3 OS=Rattus norvegicus GN=Syn3 PE=1 SV=1
Length = 579
Score = 286 bits (733), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 123/231 (53%), Positives = 177/231 (76%), Gaps = 6/231 (2%)
Query: 2 SYVIKQDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDIT 61
S + +D+++L++G GG+P++N+L VYNF KPWVF+ L+++ LG E FPL++ T
Sbjct: 169 SMALAEDYRSLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQT 228
Query: 62 YYPNFKEM-----YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDS 116
++PN K M +PVV K+GHAH+G GK++VE+ D+QD+ VVA+A TY TTE +IDS
Sbjct: 229 FFPNHKPMLTAPNFPVVIKLGHAHAGMGKIKVENQHDYQDITSVVAMAKTYATTEAFIDS 288
Query: 117 KFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDIC 176
K+D+ +QKIGSNYKA+ R SISGNWK NTGSAMLEQ+ MT+ Y+LW+D +E+FGGLDIC
Sbjct: 289 KYDIRIQKIGSNYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDSCSEMFGGLDIC 348
Query: 177 ALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLVP 227
A++ + K+G+++IIEV DS++ L+GE EED++ + DLV+ KM +LVP
Sbjct: 349 AVKAVHSKNGRDYIIEVMDSSMPLIGEHVEEDKQLMADLVVSKMS-QLLVP 398
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 247 DGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQSSTMSSMSQPSAAQQRANFGRQS 306
+G+++IIEV DS++ L+GE EED++ + DLV+ KM + S PS + +G Q
Sbjct: 357 NGRDYIIEVMDSSMPLIGEHVEEDKQLMADLVVSKMSQLLVPGASVPSPLRP---WGPQ- 412
Query: 307 SQQSVTSTAGQIG 319
++ + + GQ+G
Sbjct: 413 TKSAKSPGQGQLG 425
>sp|O62732|SYN1_CANFA Synapsin-1 (Fragment) OS=Canis familiaris GN=SYN1 PE=3 SV=1
Length = 415
Score = 210 bits (534), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 90/142 (63%), Positives = 117/142 (82%)
Query: 79 AHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQRKSIS 138
AHSG GKV+V++ DFQD+A VVA+ TY T EP+ID+K+DV VQKIG NYKA+ R S+S
Sbjct: 1 AHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRTSVS 60
Query: 139 GNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSAL 198
GNWKTNTGSAMLEQI M+D YKLW+D +E+FGGLDICA+E + GKDG++HIIEV S++
Sbjct: 61 GNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSM 120
Query: 199 SLMGETQEEDRRFIVDLVIQKM 220
L+G+ Q+E ++ IV+LV+ KM
Sbjct: 121 PLIGDHQDEYKQLIVELVVNKM 142
>sp|Q66HZ2|RIMKB_DANRE Beta-citryl-glutamate synthase B OS=Danio rerio GN=rimklb PE=2 SV=1
Length = 405
Score = 39.3 bits (90), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 73/195 (37%), Gaps = 34/195 (17%)
Query: 20 GIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYY---PNFKEM------- 69
G +N Q + N +K W F ++L PL D Y NF++M
Sbjct: 95 GCRLVNRPQAILNCVNKFWTF-------QELAGHGVPLPDTYSYGGHDNFRKMIDEAEPL 147
Query: 70 -YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSK------FDVHV 122
YPVV K H G D+ ++ Y E +S V
Sbjct: 148 GYPVVVKNARGHRGKAVFLARDKHHLSDLCHLIRHEAPYLFQEYVKESHGRDVRVVLVGG 207
Query: 123 QKIGSNYKAFQRKSISGNWKTNT---GSAMLEQIPMTDHYKLWIDEVAELFGGLDICALE 179
+ IGS R S G ++N G M+ P+++ K +V + G +D+C ++
Sbjct: 208 RVIGS----MLRCSTDGRMQSNCSLGGVGMM--CPLSEQGKQLAVQVCNILG-MDVCGID 260
Query: 180 IIVGKDGKEHIIEVN 194
++ DG + E N
Sbjct: 261 LLQKNDGSFVVCEAN 275
>sp|Q8IXN7|RIMKA_HUMAN N-acetylaspartyl-glutamate synthetase A OS=Homo sapiens GN=RIMKLA
PE=2 SV=2
Length = 391
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 74/195 (37%), Gaps = 34/195 (17%)
Query: 20 GIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYY---PNFKEM------- 69
G +N Q + N +K W F ++L P+ D Y +F +M
Sbjct: 95 GCRLVNRPQSILNCINKFWTF-------QELAGHGVPMPDTFSYGGHEDFSKMIDEAEPL 147
Query: 70 -YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKF--DVHVQKI- 125
YPVV K H G D+ ++ PY+ K+ + H + I
Sbjct: 148 GYPVVVKSTRGHRGKAVFLARDKHHLSDICHLIR------HDVPYLFQKYVKESHGKDIR 201
Query: 126 -----GSNYKAFQRKSISGNWKTNTG-SAMLEQIPMTDHYKLWIDEVAELFGGLDICALE 179
G + R S G ++N + + P+T+ K +V+ + G +D C ++
Sbjct: 202 VVVVGGQVIGSMLRCSTDGRMQSNCSLGGVGVKCPLTEQGKQLAIQVSNILG-MDFCGID 260
Query: 180 IIVGKDGKEHIIEVN 194
+++ DG + E N
Sbjct: 261 LLIMDDGSFVVCEAN 275
>sp|Q6PFX8|RIMKA_MOUSE N-acetylaspartyl-glutamate synthetase A OS=Mus musculus GN=Rimkla
PE=1 SV=1
Length = 380
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 74/195 (37%), Gaps = 34/195 (17%)
Query: 20 GIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYY---PNFKEM------- 69
G +N Q + N +K W F ++L P+ D Y +F +M
Sbjct: 95 GCRLVNRPQSILNCINKFWTF-------QELAGHGVPMPDTFSYGGHEDFSKMIDEAEPL 147
Query: 70 -YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKF--DVHVQKI- 125
YPVV K H G D+ +V PY+ K+ + H + I
Sbjct: 148 GYPVVVKSTRGHRGKAVFLARDKHHLSDICHLVR------HDVPYLFQKYVKESHGKDIR 201
Query: 126 -----GSNYKAFQRKSISGNWKTNTG-SAMLEQIPMTDHYKLWIDEVAELFGGLDICALE 179
G + R S G ++N + + P+T+ K +V+ + G +D C ++
Sbjct: 202 VVVVGGQVIGSMLRCSTDGRMQSNCFLGGVGVKCPLTEQGKQLAIQVSNILG-MDFCGID 260
Query: 180 IIVGKDGKEHIIEVN 194
+++ DG + E N
Sbjct: 261 LLIMDDGSFTVCEAN 275
>sp|A6VV11|RIMK_MARMS Ribosomal protein S6 modification protein OS=Marinomonas sp.
(strain MWYL1) GN=rimK PE=3 SV=1
Length = 301
Score = 36.2 bits (82), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 16 FNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPN-----FKEM- 69
F + G SIN + +DK LQL + G P ++P+ K +
Sbjct: 80 FEMMGTYSINESVAISRSRDK----LRSLQLMSRKGL-GLPKTGFAHHPDKIGDLLKNVG 134
Query: 70 -YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKI--- 125
PVV K+ G G V ESN+ + + + YI ++ +
Sbjct: 135 GAPVVIKLLEGTQGIGVVLAESNKTAESIIEAFMGLKANILVQEYIKEAGGADIRCLVVG 194
Query: 126 GSNYKAFQRKSISGNWKTNT---GSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIV 182
G A +R+ G +++N G+A L I ++ + E A++ GL++C ++I+
Sbjct: 195 GKVIAAMKRQGAEGEFRSNLHRGGTASL--IRLSPEERRTAVEAAKVM-GLNMCGVDILR 251
Query: 183 GKDGKEHIIEVNDS 196
+G I+EVN S
Sbjct: 252 SNNG-PLIMEVNSS 264
>sp|Q051S5|UVRC_LEPBL UvrABC system protein C OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain L550) GN=uvrC PE=3 SV=1
Length = 609
Score = 35.0 bits (79), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 236 VRKVEKTYIPNDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQSSTMSSMSQ--P 293
+K E+ Y P D + I ++N S + L+ ++E RF V + TM S+ Q P
Sbjct: 500 AKKREEIYFPGDNEPFIFDMNSSGMKLLRHLRDEAHRFGVSHHRSRRNKETMRSLIQNVP 559
Query: 294 SAAQQRANF------GRQ----SSQQSVTSTAGQIGED-SEDTMKNLRK 331
+R+ G + ++++ + + G IGE+ +E +K +RK
Sbjct: 560 DIGLKRSKLLLRHFSGEKKIEDATKEELLAVPG-IGENLAEKILKRIRK 607
>sp|Q04RU6|UVRC_LEPBJ UvrABC system protein C OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain JB197) GN=uvrC PE=3 SV=1
Length = 609
Score = 35.0 bits (79), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 236 VRKVEKTYIPNDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQSSTMSSMSQ--P 293
+K E+ Y P D + I ++N S + L+ ++E RF V + TM S+ Q P
Sbjct: 500 AKKREEIYFPGDNEPFIFDMNSSGMKLLRHLRDEAHRFGVSHHRSRRNKETMRSLIQNVP 559
Query: 294 SAAQQRANF------GRQ----SSQQSVTSTAGQIGED-SEDTMKNLRK 331
+R+ G + ++++ + + G IGE+ +E +K +RK
Sbjct: 560 DIGLKRSKLLLRHFSGEKKIEDATKEELLAVPG-IGENLAEKILKRIRK 607
>sp|Q5FL35|GLMM_LACAC Phosphoglucosamine mutase OS=Lactobacillus acidophilus (strain ATCC
700396 / NCK56 / N2 / NCFM) GN=glmM PE=3 SV=1
Length = 452
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 18/131 (13%)
Query: 15 GFNIGGIPSINTLQGVY-NFQDKPWVFAHLLQLQRKLGKE----------------NFPL 57
G+N+GG S + + Y N D HL+ + +K GK N P+
Sbjct: 322 GYNLGGEQSGHVIMSDYHNTGDGMLTGLHLMLVMKKTGKSLSELLKDFKDYPQCLVNVPV 381
Query: 58 IDITYYPNFKEMYPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSK 117
D + + + V+ ++ +G G+V V + QD+ V+A T T+ Y+D
Sbjct: 382 TDKKSWKEHQPILDVIAEVEKDMAGNGRVLVRPSG-TQDLLRVMAEGPTQEETDAYVDRI 440
Query: 118 FDVHVQKIGSN 128
V +++G+N
Sbjct: 441 VKVVEKEMGTN 451
>sp|A4W8L7|RIMK_ENT38 Ribosomal protein S6 modification protein OS=Enterobacter sp.
(strain 638) GN=rimK PE=3 SV=1
Length = 300
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 68/163 (41%), Gaps = 12/163 (7%)
Query: 44 LQLQRKLGKENFPLIDITYYPN-------FKEMYPVVFKIGHAHSGFGKVRVESNQDFQD 96
LQL + G + P+ I + P+ P+V K+ G G V E+ Q +
Sbjct: 104 LQLLARQGI-DLPMTGIAHSPDDTSDLIAMVGGAPLVVKLVEGTQGIGVVLAETRQAAES 162
Query: 97 MAGVVAVANTYCTTEPYIDSK--FDVHVQKIGSN-YKAFQRKSISGNWKTNTGSAMLEQI 153
+ N + + YI+ D+ +G+ A +R++ G++++N + +I
Sbjct: 163 VIDAFRGLNAHILVQEYIEEAKGRDIRCLVVGNEVVAAIERQAKDGDFRSNLHRGGVARI 222
Query: 154 PMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDS 196
+ I A GLDI ++I+ G ++EVN S
Sbjct: 223 ADITEREREIAITAAQTLGLDIAGVDILRANRGP-LVMEVNAS 264
>sp|Q9EQW7|KI13A_MOUSE Kinesin-like protein KIF13A OS=Mus musculus GN=Kif13a PE=1 SV=1
Length = 1749
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 44/91 (48%)
Query: 241 KTYIPNDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQSSTMSSMSQPSAAQQRA 300
KT ND +++++V + T E++R + + +++++ PS+A R
Sbjct: 590 KTLNSNDPVQNVVQVLEKQYLEEKRTALEEQRLMYERELEQLRQQLSPERQPPSSASDRL 649
Query: 301 NFGRQSSQQSVTSTAGQIGEDSEDTMKNLRK 331
+ Q++QQ VT A + E ++ LR+
Sbjct: 650 AYSSQTAQQKVTQWAEERDELFRQSLAKLRE 680
>sp|Q0VCE9|RIMKB_BOVIN Beta-citryl-glutamate synthase B OS=Bos taurus GN=RIMKLB PE=2 SV=1
Length = 386
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 74/197 (37%), Gaps = 38/197 (19%)
Query: 20 GIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYY---PNFKEM------- 69
G +N Q + N +K W F ++L PL D Y NF +M
Sbjct: 99 GCRLMNRPQAILNCVNKFWTF-------QELAGHGVPLPDTFSYGGHENFAKMIDEAEVL 151
Query: 70 -YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKF--DVH----- 121
+P+V K H G D++ ++ PY+ K+ + H
Sbjct: 152 EFPMVVKNTRGHRGKAVFLARDKHHLADLSHLIR------HEAPYLFQKYVKESHGRDVR 205
Query: 122 -VQKIGSNYKAFQRKSISGNWKTNT---GSAMLEQIPMTDHYKLWIDEVAELFGGLDICA 177
+ G R S G ++N G M+ +++ K +V+ + G +D+C
Sbjct: 206 VIVVGGRVVGTMLRCSTDGRMQSNCSLGGVGMM--CSLSEQGKQLAIQVSNILG-MDVCG 262
Query: 178 LEIIVGKDGKEHIIEVN 194
+++++ DG + E N
Sbjct: 263 IDLLMKDDGSFCVCEAN 279
>sp|B7VSX1|RIMK_VIBSL Ribosomal protein S6 modification protein OS=Vibrio splendidus
(strain LGP32) GN=rimK PE=3 SV=1
Length = 301
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 71 PVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYID--SKFDVHVQKIGSN 128
P+V K+ G G V E+N+ + + + +I+ + D+ +G+
Sbjct: 137 PLVIKLLEGTQGIGVVLAETNKAAESVIEAFMGLKANILVQEFIEEANGADIRCFVVGNK 196
Query: 129 Y-KAFQRKSISGNWKTNT---GSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGK 184
A +R++ G +++N G+A L + +T + A++ G L++C ++I+ K
Sbjct: 197 VIAAMKRQAGEGEFRSNLHRGGTAQL--VKLTKEERATAINAAKIMG-LNLCGVDILQSK 253
Query: 185 DGKEHIIEVNDS 196
+G ++EVN S
Sbjct: 254 NG-PVVMEVNSS 264
>sp|Q9ULI2|RIMKB_HUMAN Beta-citryl-glutamate synthase B OS=Homo sapiens GN=RIMKLB PE=2
SV=2
Length = 386
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 74/197 (37%), Gaps = 38/197 (19%)
Query: 20 GIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYY---PNFKEM------- 69
G +N Q + N +K W F ++L PL D Y NF +M
Sbjct: 99 GCRLMNRPQAILNCVNKFWTF-------QELAGHGVPLPDTFSYGGHENFAKMIDEAEVL 151
Query: 70 -YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKF--DVH----- 121
+P+V K H G D++ ++ PY+ K+ + H
Sbjct: 152 EFPMVVKNTRGHRGKAVFLARDKHHLADLSHLIR------HEAPYLFQKYVKESHGRDVR 205
Query: 122 -VQKIGSNYKAFQRKSISGNWKTNT---GSAMLEQIPMTDHYKLWIDEVAELFGGLDICA 177
+ G R S G ++N G M+ +++ K +V+ + G +D+C
Sbjct: 206 VIVVGGRVVGTMLRCSTDGRMQSNCSLGGVGMM--CSLSEQGKQLAIQVSNILG-MDVCG 262
Query: 178 LEIIVGKDGKEHIIEVN 194
+++++ DG + E N
Sbjct: 263 IDLLMKDDGSFCVCEAN 279
>sp|Q4VBI7|STX18_DANRE Syntaxin-18 OS=Danio rerio GN=stx18 PE=2 SV=1
Length = 314
Score = 32.3 bits (72), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 25/141 (17%)
Query: 144 NTGSAMLEQIP-MTDHYKLWIDEVAELFGGLDICALEI-------------IVGKDGKEH 189
N GS M ++ MTD + ID+ A++F + CA I + KD +
Sbjct: 75 NAGSVMSSEVSRMTDSERDQIDQDAQIF--MRTCAEAISQLRSEMDKKQVSMQVKDHRAA 132
Query: 190 IIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLVPPDIESTIEVRKVEKTYIPNDGK 249
++++ DS L + + E R V V+ K ++S L P I + E R+ +DG+
Sbjct: 133 VLDLIDSYLKGVCKLYSEQRAVRVKRVVDKKRLSRLEPEQINT--EKRQ-------SDGE 183
Query: 250 EHIIEVNDSALSLMGETQEED 270
E+ V+D + L E + ED
Sbjct: 184 ENDKPVSDGNVDLWEENRVED 204
>sp|Q7MCS5|RIMK_VIBVY Ribosomal protein S6 modification protein OS=Vibrio vulnificus
(strain YJ016) GN=rimK PE=3 SV=1
Length = 301
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 71 PVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSK--FDVHVQKIGSN 128
P+V K+ G G V E+N+ + + + +I+ D+ +G+
Sbjct: 137 PLVIKLLEGTQGIGVVLAETNKAAESVIEAFMGLKANIMVQEFIEEAKGADIRCFVVGNK 196
Query: 129 Y-KAFQRKSISGNWKTNT---GSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGK 184
A +R++ G +++N GSA L + ++ + A++ G L++C ++I+ K
Sbjct: 197 VIAAMKRQAKEGEFRSNLHRGGSAQL--VRLSKEERATAINAAKVMG-LNLCGVDILQSK 253
Query: 185 DGKEHIIEVNDS 196
+G ++EVN S
Sbjct: 254 NGPV-VMEVNSS 264
>sp|Q8D5R2|RIMK_VIBVU Ribosomal protein S6 modification protein OS=Vibrio vulnificus
(strain CMCP6) GN=rimK PE=3 SV=1
Length = 301
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 71 PVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSK--FDVHVQKIGSN 128
P+V K+ G G V E+N+ + + + +I+ D+ +G+
Sbjct: 137 PLVIKLLEGTQGIGVVLAETNKAAESVIEAFMGLKANIMVQEFIEEAKGADIRCFVVGNK 196
Query: 129 Y-KAFQRKSISGNWKTNT---GSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGK 184
A +R++ G +++N GSA L + ++ + A++ G L++C ++I+ K
Sbjct: 197 VIAAMKRQAKEGEFRSNLHRGGSAQL--VRLSKEERATAINAAKVMG-LNLCGVDILQSK 253
Query: 185 DGKEHIIEVNDS 196
+G ++EVN S
Sbjct: 254 NGPV-VMEVNSS 264
>sp|Q87JS5|RIMK_VIBPA Ribosomal protein S6 modification protein OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rimK PE=3 SV=1
Length = 301
Score = 32.0 bits (71), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 71 PVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSK--FDVHVQKIGSN 128
P+V K+ G G V E+N+ + + + +I+ D+ +G+
Sbjct: 137 PLVIKLLEGTQGIGVVLAETNKAAESVIEAFMGLKANIMVQEFIEEAKGADIRCFVVGNK 196
Query: 129 Y-KAFQRKSISGNWKTNT---GSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGK 184
A +R++ G +++N GSA L + ++ + A++ G L++C ++I+ K
Sbjct: 197 VIAAMKRQAKEGEFRSNLHRGGSAQL--VRLSKEERATAVNAAKVMG-LNLCGVDILQSK 253
Query: 185 DGKEHIIEVNDS 196
+G ++EVN S
Sbjct: 254 NGPV-VMEVNSS 264
>sp|Q6AIM2|HEM1_DESPS Glutamyl-tRNA reductase OS=Desulfotalea psychrophila (strain LSv54
/ DSM 12343) GN=hemA PE=3 SV=1
Length = 426
Score = 31.6 bits (70), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 27/124 (21%)
Query: 165 EVAELFGGLDICA---------LEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDL 215
E+A+ FGG IC ++II+ G +HII + + + + + F +D+
Sbjct: 222 ELADKFGGTAICMEELYAQLEDVDIIISSTGAQHII-IESAEVRPIMRVRRNRPLFFIDI 280
Query: 216 VIQKMQVSVLVPPDIESTIEVRKVEKTYIPN-DGKEHIIEVNDS-----ALSLMGETQEE 269
VP D++ E+ ++E Y+ + D +++EVN S A+ +EE
Sbjct: 281 A---------VPRDLDP--ELNELENVYLYDIDDLSNVVEVNKSGRDHEAIKAGCIVEEE 329
Query: 270 DRRF 273
R+F
Sbjct: 330 TRKF 333
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,739,933
Number of Sequences: 539616
Number of extensions: 5032238
Number of successful extensions: 14584
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 14511
Number of HSP's gapped (non-prelim): 96
length of query: 340
length of database: 191,569,459
effective HSP length: 118
effective length of query: 222
effective length of database: 127,894,771
effective search space: 28392639162
effective search space used: 28392639162
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)