Query psy10366
Match_columns 340
No_of_seqs 217 out of 701
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 16:02:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3895|consensus 100.0 3.5E-64 7.5E-69 482.2 15.7 225 2-226 167-396 (488)
2 PF02750 Synapsin_C: Synapsin, 100.0 7.5E-59 1.6E-63 417.3 20.4 198 25-222 1-203 (203)
3 COG0189 RimK Glutathione synth 100.0 2.3E-39 4.9E-44 314.6 19.1 204 10-225 94-316 (318)
4 PF08443 RimK: RimK-like ATP-g 100.0 3.3E-36 7.1E-41 271.2 14.4 176 33-220 1-190 (190)
5 PRK10446 ribosomal protein S6 100.0 3.5E-35 7.7E-40 281.2 21.3 203 11-225 75-291 (300)
6 TIGR02144 LysX_arch Lysine bio 100.0 4E-32 8.6E-37 255.3 22.1 202 10-224 62-279 (280)
7 TIGR01380 glut_syn glutathione 100.0 9.7E-33 2.1E-37 266.9 17.7 196 10-223 98-311 (312)
8 PLN02941 inositol-tetrakisphos 100.0 6.8E-32 1.5E-36 263.0 19.0 183 8-206 78-311 (328)
9 TIGR00768 rimK_fam alpha-L-glu 100.0 1.5E-31 3.3E-36 249.1 20.2 199 10-220 63-277 (277)
10 PRK05246 glutathione synthetas 100.0 1.4E-31 3.1E-36 258.7 18.8 197 11-225 100-314 (316)
11 PRK12458 glutathione synthetas 100.0 2.8E-30 6.2E-35 252.6 18.1 199 9-225 95-326 (338)
12 TIGR02291 rimK_rel_E_lig alpha 99.9 9E-27 1.9E-31 226.1 18.1 178 23-212 25-282 (317)
13 TIGR03103 trio_acet_GNAT GNAT- 99.9 5.9E-26 1.3E-30 234.9 18.9 183 23-220 285-540 (547)
14 PRK14016 cyanophycin synthetas 99.9 5E-24 1.1E-28 226.9 21.5 187 24-222 203-473 (727)
15 TIGR02068 cya_phycin_syn cyano 99.9 6.9E-23 1.5E-27 221.8 21.2 203 8-221 160-471 (864)
16 PRK01372 ddl D-alanine--D-alan 99.9 1.9E-22 4.1E-27 192.3 21.0 202 12-223 74-300 (304)
17 TIGR01205 D_ala_D_alaTIGR D-al 99.9 1.1E-21 2.3E-26 187.7 21.0 183 10-203 79-289 (315)
18 PRK02471 bifunctional glutamat 99.9 3.7E-21 8E-26 205.4 18.3 193 17-220 470-750 (752)
19 PRK14571 D-alanyl-alanine synt 99.9 6.5E-20 1.4E-24 175.4 20.7 183 10-204 69-270 (299)
20 TIGR01435 glu_cys_lig_rel glut 99.8 5.8E-20 1.3E-24 194.9 19.1 189 21-220 461-736 (737)
21 PRK14569 D-alanyl-alanine synt 99.8 1.2E-19 2.5E-24 174.2 19.3 181 11-203 73-269 (296)
22 PRK14570 D-alanyl-alanine synt 99.8 1.4E-18 3.1E-23 171.9 21.3 185 10-204 103-321 (364)
23 PRK01966 ddl D-alanyl-alanine 99.8 3.2E-18 6.8E-23 166.8 21.9 202 11-222 98-330 (333)
24 PRK14572 D-alanyl-alanine synt 99.8 2.6E-18 5.7E-23 168.3 21.0 182 12-204 106-320 (347)
25 PRK14568 vanB D-alanine--D-lac 99.8 7.8E-18 1.7E-22 164.7 22.1 202 10-221 106-338 (343)
26 PF02955 GSH-S_ATP: Prokaryoti 99.8 1.4E-18 3E-23 155.9 11.6 142 58-204 12-169 (173)
27 PRK13790 phosphoribosylamine-- 99.8 2E-17 4.3E-22 164.1 19.2 205 10-222 41-276 (379)
28 TIGR01161 purK phosphoribosyla 99.8 2.9E-17 6.3E-22 160.5 17.5 182 11-205 74-271 (352)
29 PRK12767 carbamoyl phosphate s 99.7 9.9E-17 2.2E-21 153.9 19.3 189 14-221 89-293 (326)
30 PRK05586 biotin carboxylase; V 99.7 1.7E-16 3.7E-21 160.2 20.7 201 10-220 89-316 (447)
31 TIGR01142 purT phosphoribosylg 99.7 1.1E-16 2.4E-21 157.1 17.4 193 11-218 76-293 (380)
32 PF13535 ATP-grasp_4: ATP-gras 99.7 1.7E-16 3.8E-21 138.6 13.9 156 32-196 1-178 (184)
33 PRK08463 acetyl-CoA carboxylas 99.7 1.1E-15 2.4E-20 156.0 20.8 198 11-221 89-317 (478)
34 PRK07178 pyruvate carboxylase 99.7 7.7E-16 1.7E-20 156.8 19.5 200 10-220 88-315 (472)
35 PLN02948 phosphoribosylaminoim 99.7 9.7E-16 2.1E-20 159.9 18.8 184 11-205 97-296 (577)
36 TIGR00514 accC acetyl-CoA carb 99.7 1.6E-15 3.5E-20 153.1 19.6 201 10-220 89-316 (449)
37 PRK08591 acetyl-CoA carboxylas 99.7 1.5E-15 3.2E-20 153.0 18.3 201 11-221 90-317 (451)
38 PRK06019 phosphoribosylaminoim 99.7 1.3E-15 2.8E-20 150.6 17.4 179 11-204 77-272 (372)
39 PRK08462 biotin carboxylase; V 99.7 4.6E-15 9.9E-20 149.4 20.4 201 10-220 91-318 (445)
40 PRK08654 pyruvate carboxylase 99.7 3.3E-15 7.2E-20 153.5 19.3 197 11-221 90-316 (499)
41 PRK00885 phosphoribosylamine-- 99.7 3.9E-15 8.5E-20 148.9 19.0 199 11-221 77-313 (420)
42 PRK06111 acetyl-CoA carboxylas 99.7 6.2E-15 1.3E-19 148.1 19.7 202 10-221 89-317 (450)
43 TIGR01235 pyruv_carbox pyruvat 99.6 3.4E-15 7.4E-20 165.5 18.2 202 10-220 89-316 (1143)
44 PRK12833 acetyl-CoA carboxylas 99.6 9.3E-15 2E-19 148.7 18.4 200 10-220 92-319 (467)
45 PRK14573 bifunctional D-alanyl 99.6 1.5E-14 3.2E-19 156.1 19.8 187 6-203 539-760 (809)
46 PRK07206 hypothetical protein; 99.6 9.2E-15 2E-19 145.3 16.9 194 16-221 89-314 (416)
47 PRK05294 carB carbamoyl phosph 99.6 1.5E-14 3.2E-19 160.3 19.6 199 11-221 644-865 (1066)
48 PRK09288 purT phosphoribosylgl 99.6 1.5E-14 3.2E-19 142.8 16.9 174 12-196 90-284 (395)
49 PLN02257 phosphoribosylamine-- 99.6 4.2E-14 9.1E-19 143.1 19.8 205 10-225 76-319 (434)
50 TIGR01369 CPSaseII_lrg carbamo 99.6 3.5E-14 7.5E-19 157.2 19.9 199 10-221 643-865 (1050)
51 PRK06849 hypothetical protein; 99.6 2E-14 4.3E-19 142.4 16.0 165 16-196 97-275 (389)
52 PF07478 Dala_Dala_lig_C: D-al 99.6 6.9E-14 1.5E-18 128.1 16.8 152 46-203 1-179 (203)
53 PRK12999 pyruvate carboxylase; 99.6 1.1E-13 2.5E-18 153.9 21.1 200 10-221 93-321 (1146)
54 PRK02186 argininosuccinate lya 99.6 1E-13 2.2E-18 151.1 20.2 195 12-221 85-303 (887)
55 TIGR00877 purD phosphoribosyla 99.5 2.9E-13 6.3E-18 135.2 18.9 177 11-196 79-289 (423)
56 PF14398 ATPgrasp_YheCD: YheC/ 99.5 2.9E-13 6.3E-18 128.5 16.7 190 17-219 5-257 (262)
57 PRK13789 phosphoribosylamine-- 99.5 7.2E-13 1.6E-17 133.8 19.5 205 10-224 82-323 (426)
58 PF02655 ATP-grasp_3: ATP-gras 99.5 1.9E-14 4.1E-19 126.7 6.1 148 33-196 1-157 (161)
59 PRK12815 carB carbamoyl phosph 99.5 6.1E-13 1.3E-17 147.6 19.1 197 11-221 645-863 (1068)
60 PRK06524 biotin carboxylase-li 99.5 1.6E-12 3.6E-17 132.8 20.1 172 12-196 118-322 (493)
61 PRK06395 phosphoribosylamine-- 99.5 1.2E-12 2.6E-17 132.5 18.5 202 10-222 79-319 (435)
62 TIGR02712 urea_carbox urea car 99.5 8.1E-13 1.8E-17 147.8 18.9 203 10-221 88-316 (1201)
63 COG1181 DdlA D-alanine-D-alani 99.5 2.5E-12 5.4E-17 125.5 18.0 182 12-203 79-290 (317)
64 PLN02735 carbamoyl-phosphate s 99.4 2.9E-12 6.3E-17 142.5 18.8 191 16-220 124-344 (1102)
65 TIGR01369 CPSaseII_lrg carbamo 99.4 8.9E-12 1.9E-16 138.2 19.7 194 15-219 106-324 (1050)
66 PRK13278 purP 5-formaminoimida 99.4 2.9E-11 6.3E-16 119.8 21.0 196 16-221 104-349 (358)
67 COG0439 AccC Biotin carboxylas 99.4 4.8E-12 1E-16 128.5 15.7 202 11-221 90-317 (449)
68 PRK05294 carB carbamoyl phosph 99.4 8.8E-12 1.9E-16 138.4 19.2 192 15-218 107-325 (1066)
69 PLN02735 carbamoyl-phosphate s 99.4 6.4E-12 1.4E-16 139.8 17.8 191 20-221 686-900 (1102)
70 PRK12815 carB carbamoyl phosph 99.4 2E-11 4.3E-16 135.7 19.2 194 15-219 107-325 (1068)
71 PF14397 ATPgrasp_ST: Sugar-tr 99.3 4.8E-11 1.1E-15 114.7 17.4 171 25-204 16-265 (285)
72 PRK05784 phosphoribosylamine-- 99.3 7.3E-11 1.6E-15 121.3 17.8 203 11-225 84-339 (486)
73 PF02750 Synapsin_C: Synapsin, 99.3 9.4E-13 2E-17 119.5 2.7 43 242-284 161-203 (203)
74 KOG3895|consensus 99.3 2.9E-12 6.4E-17 124.7 6.3 46 243-288 351-396 (488)
75 COG1821 Predicted ATP-utilizin 99.3 9.9E-12 2.1E-16 116.9 9.2 177 11-218 90-277 (307)
76 PF15632 ATPgrasp_Ter: ATP-gra 99.3 1.2E-10 2.6E-15 114.2 16.4 187 15-221 85-304 (329)
77 PF02786 CPSase_L_D2: Carbamoy 99.2 3.8E-10 8.1E-15 104.3 14.4 172 35-220 1-203 (211)
78 PF05770 Ins134_P3_kin: Inosit 99.2 3.5E-10 7.5E-15 110.0 13.8 188 8-206 64-296 (307)
79 PF02222 ATP-grasp: ATP-grasp 99.1 9.6E-10 2.1E-14 98.7 13.6 152 47-206 1-168 (172)
80 COG0027 PurT Formate-dependent 99.1 5.3E-09 1.1E-13 101.3 16.2 190 10-215 88-301 (394)
81 COG0026 PurK Phosphoribosylami 99.1 2.9E-09 6.4E-14 105.1 14.4 199 10-225 75-288 (375)
82 PRK13277 5-formaminoimidazole- 99.1 6.3E-09 1.4E-13 103.1 16.7 193 18-221 107-357 (366)
83 COG4770 Acetyl/propionyl-CoA c 99.0 1.3E-08 2.9E-13 104.6 19.0 195 11-218 90-314 (645)
84 KOG0238|consensus 99.0 8.8E-09 1.9E-13 104.7 15.6 195 11-218 86-310 (670)
85 COG0458 CarB Carbamoylphosphat 98.9 2.1E-08 4.5E-13 100.0 14.8 168 16-195 96-288 (400)
86 COG2232 Predicted ATP-dependen 98.9 2.3E-08 5E-13 97.4 12.5 167 25-218 110-295 (389)
87 PF03133 TTL: Tubulin-tyrosine 98.9 2.3E-08 5.1E-13 95.5 11.8 144 71-221 67-281 (292)
88 COG1038 PycA Pyruvate carboxyl 98.8 1.2E-07 2.6E-12 100.6 14.2 194 12-218 97-320 (1149)
89 PF01071 GARS_A: Phosphoribosy 98.5 3E-06 6.6E-11 77.6 14.4 149 42-196 5-188 (194)
90 KOG1057|consensus 98.5 8.4E-08 1.8E-12 101.2 4.5 178 14-204 109-328 (1018)
91 KOG0369|consensus 98.4 3.1E-06 6.7E-11 88.8 12.7 192 12-217 123-345 (1176)
92 COG0151 PurD Phosphoribosylami 98.3 4.4E-05 9.5E-10 77.0 18.1 202 10-225 77-318 (428)
93 COG3919 Predicted ATP-grasp en 98.2 1.6E-05 3.4E-10 77.1 10.8 180 24-216 103-306 (415)
94 PF14243 DUF4343: Domain of un 98.1 1.7E-05 3.6E-10 68.3 9.8 123 71-211 3-127 (130)
95 KOG0368|consensus 97.8 0.00018 3.9E-09 81.0 12.2 176 12-195 154-375 (2196)
96 PF14305 ATPgrasp_TupA: TupA-l 97.6 0.0034 7.4E-08 59.2 16.8 166 29-202 14-221 (239)
97 KOG2157|consensus 97.4 0.0009 1.9E-08 69.3 10.5 155 70-226 200-428 (497)
98 TIGR01016 sucCoAbeta succinyl- 97.4 0.0022 4.7E-08 64.2 12.3 148 42-192 7-213 (386)
99 PRK00696 sucC succinyl-CoA syn 97.1 0.0078 1.7E-07 60.2 12.7 84 42-128 7-116 (388)
100 KOG0237|consensus 96.5 0.051 1.1E-06 57.3 13.5 201 11-225 83-324 (788)
101 PF14403 CP_ATPgrasp_2: Circul 96.0 0.043 9.4E-07 56.4 10.0 121 8-136 256-424 (445)
102 KOG0370|consensus 95.7 0.15 3.2E-06 56.5 12.7 194 10-215 1007-1226(1435)
103 COG1759 5-formaminoimidazole-4 94.4 0.23 5E-06 49.1 9.0 172 45-222 130-353 (361)
104 KOG2156|consensus 94.1 0.03 6.4E-07 58.2 2.3 94 24-125 249-360 (662)
105 PRK10507 bifunctional glutathi 91.2 0.71 1.5E-05 49.5 7.8 116 11-135 474-599 (619)
106 PF13549 ATP-grasp_5: ATP-gras 89.3 0.61 1.3E-05 43.7 5.0 90 36-128 8-121 (222)
107 PHA02117 glutathionylspermidin 87.9 1.8 3.9E-05 44.1 7.6 107 18-135 255-378 (397)
108 COG2308 Uncharacterized conser 87.4 1.8 3.8E-05 44.6 7.1 132 11-145 300-464 (488)
109 PRK14046 malate--CoA ligase su 83.2 4.3 9.3E-05 41.1 7.7 83 43-128 8-116 (392)
110 KOG2158|consensus 81.5 2.8 6.1E-05 43.5 5.6 51 70-128 227-285 (565)
111 KOG0370|consensus 81.1 1.2 2.6E-05 49.8 2.9 173 16-196 478-670 (1435)
112 TIGR02049 gshA_ferroox glutama 78.8 18 0.00038 36.8 10.0 85 70-154 257-361 (403)
113 PF08442 ATP-grasp_2: ATP-gras 78.2 2.1 4.5E-05 39.6 3.2 71 44-118 8-105 (202)
114 PF08886 GshA: Glutamate-cyste 77.8 5.8 0.00013 40.2 6.4 84 70-153 260-363 (404)
115 COG0045 SucC Succinyl-CoA synt 76.3 5.1 0.00011 40.6 5.5 57 43-103 8-78 (387)
116 PF04174 CP_ATPgrasp_1: A circ 69.2 11 0.00024 37.5 6.0 24 173-196 68-91 (330)
117 PF07065 D123: D123; InterPro 68.8 14 0.00031 36.2 6.6 84 106-195 150-237 (299)
118 COG0754 Gsp Glutathionylspermi 66.6 6.1 0.00013 39.8 3.5 113 13-133 244-365 (387)
119 PLN02235 ATP citrate (pro-S)-l 62.2 22 0.00047 36.7 6.7 46 71-116 54-113 (423)
120 PF11379 DUF3182: Protein of u 59.1 26 0.00057 35.1 6.4 97 70-166 137-251 (355)
121 PLN00124 succinyl-CoA ligase [ 58.5 30 0.00064 35.6 6.9 55 42-100 34-110 (422)
122 PF04174 CP_ATPgrasp_1: A circ 56.5 9.9 0.00022 37.8 3.0 91 10-102 221-321 (330)
123 COG1181 DdlA D-alanine-D-alani 47.5 20 0.00043 35.4 3.5 115 10-135 24-159 (317)
124 COG2308 Uncharacterized conser 47.1 12 0.00027 38.7 2.1 24 173-196 145-168 (488)
125 PF12221 HflK_N: Bacterial mem 32.3 49 0.0011 23.2 2.6 20 319-338 20-39 (42)
126 PF11590 DNAPolymera_Pol: DNA 31.1 45 0.00099 23.3 2.2 17 318-334 22-38 (41)
127 PRK06860 lipid A biosynthesis 22.7 2.8E+02 0.006 26.7 6.9 60 166-230 230-289 (309)
128 PF11834 DUF3354: Domain of un 21.6 2.5E+02 0.0053 21.7 5.0 43 139-187 10-52 (69)
129 PRK10324 translation inhibitor 20.6 3.5E+02 0.0076 22.4 6.2 70 153-225 10-86 (113)
130 PF11892 DUF3412: Domain of un 20.1 74 0.0016 27.4 2.0 19 319-337 47-65 (123)
No 1
>KOG3895|consensus
Probab=100.00 E-value=3.5e-64 Score=482.19 Aligned_cols=225 Identities=59% Similarity=1.065 Sum_probs=220.1
Q ss_pred CccccCChHHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCccc-----ccEEEec
Q psy10366 2 SYVIKQDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM-----YPVVFKI 76 (340)
Q Consensus 2 ~~~~~~~~r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~~-----~PvVvKp 76 (340)
+++.+||||.++++|.+.|+|.+||+.+++++.||+|+|++|..|.+++|.+.||++++||||++++| ||||||.
T Consensus 167 ~mA~~~d~rslvig~qyagiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPnHK~m~s~~tyPvVVkv 246 (488)
T KOG3895|consen 167 SMALNEDYRSLVIGLQYAGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPNHKEMLSQPTYPVVVKV 246 (488)
T ss_pred hhccccchHHHHHHHHhcCCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCCchhhccCCCCcEEEEe
Confidence 68899999999999999999999999999999999999999999999999999999999999999988 9999999
Q ss_pred CCCCcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCeEEEEEEEecCCCcccccCCceeeecCCC
Q psy10366 77 GHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMT 156 (340)
Q Consensus 77 ~~Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~v~A~~R~s~~~~WktNvgga~~e~~~~~ 156 (340)
+++|+|+|++||+|.++|+|+..++.+.+.|..+|+|||.+|||||++||.+|+||||++++||||||+|++++|++.++
T Consensus 247 ghahsGmGKiKV~Nh~dfqDi~svval~~Tyat~epFiDaKYDiriQKIG~nYKaymRtsIsgnWKtNtGSamLEQIams 326 (488)
T KOG3895|consen 247 GHAHSGMGKIKVENHEDFQDIASVVALTKTYATAEPFIDAKYDIRIQKIGHNYKAYMRTSISGNWKTNTGSAMLEQIAMS 326 (488)
T ss_pred cccccccceeeecchhhhHhHHHHHHHHhhhhhccccccccceeehhhhhhhHHHHhhhhhccCcccCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHHHhhcCC
Q psy10366 157 DHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLV 226 (340)
Q Consensus 157 ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i~~~~~~ 226 (340)
|++|.|++.|++.|||||||+||+|.+|||+.||+|||+|+||+++.++++|++.|+++|+.+|.+.+.+
T Consensus 327 eRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d~smpliGeh~eeDrql~~~Lvvskmaq~l~~ 396 (488)
T KOG3895|consen 327 ERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMDSSMPLIGEHQEEDRQLISELVVSKMAQLLTR 396 (488)
T ss_pred HHHHHHHHHHHHhcCCcceEEeeeeecccchhheeeeccccccccccchhHHHHHHHHHHHHHhhhccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999876653
No 2
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=100.00 E-value=7.5e-59 Score=417.31 Aligned_cols=198 Identities=66% Similarity=1.177 Sum_probs=173.4
Q ss_pred CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCccc-----ccEEEecCCCCcccceEEecChhhHHHHHH
Q psy10366 25 NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM-----YPVVFKIGHAHSGFGKVRVESNQDFQDMAG 99 (340)
Q Consensus 25 Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~~-----~PvVvKp~~Gs~G~Gv~lv~~~~~l~~i~~ 99 (340)
||++||+++.||+|+|++|++|.+++|.+.||++++||||++++| ||+|||.+++|+|.|++|++|.++|+++.+
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~ypnh~em~s~~~fPvVvKvG~~h~G~GKvkv~n~~~~qDi~s 80 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYPNHREMLSAPRFPVVVKVGHAHAGMGKVKVDNQQDFQDIAS 80 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EEESSGGGGCS-SSSSEEEEESS-STTTTEEEE-SHHHHHHHHH
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhCCcccccceeeecCChhhhccCCCCCEEEEEccccCceeEEEEccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHHhhCceEEeecCCCCCCcEEEEEECCeEEEEEEEecCCCcccccCCceeeecCCChHHHHHHHHHHHHhCCCcEEEEe
Q psy10366 100 VVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALE 179 (340)
Q Consensus 100 ~l~~~~~~~~vQefI~~g~DIRv~VIG~~v~A~~R~s~~~~WktNvgga~~e~~~~~ee~~~~a~~aa~a~~GldiaGVD 179 (340)
+++..+.|++++|||++.|||||+.||++++||+|+|++++||||+|++++|+++++|++|+|+++|+++|||||||+||
T Consensus 81 ll~~~~~Y~T~EPfId~kyDirvqkIG~~ykA~~R~sis~nWK~N~gsa~lEqi~~~~ryk~Wvd~~s~lfGGlDI~~v~ 160 (203)
T PF02750_consen 81 LLAITKDYATTEPFIDAKYDIRVQKIGNNYKAYMRTSISGNWKANTGSAMLEQIAMTERYKLWVDECSELFGGLDICAVD 160 (203)
T ss_dssp HHHHHTS-EEEEE---EEEEEEEEEETTEEEEEEEEESSSTSSTTSSSEEEEEE---HHHHHHHHHHGGGGG--SEEEEE
T ss_pred HHHhcCceEEeeccccceeEEEEEEEcCeEEEEEEccccccccccccchheeecCCChHHHHHHHHHHHHcCCccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHHHh
Q psy10366 180 IIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQV 222 (340)
Q Consensus 180 ll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i~~ 222 (340)
+|++|||++||+|||+|+||+++++|++|++.|||+|+.+|++
T Consensus 161 ai~~kdGke~Iievnds~m~L~g~~qeeDr~~I~dlV~~km~q 203 (203)
T PF02750_consen 161 AIHGKDGKEYIIEVNDSSMPLIGEHQEEDRRLIADLVVAKMNQ 203 (203)
T ss_dssp EEEETTS-EEEEEEE-TT----GGGHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCCEEEEEecCCcccccchhHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999974
No 3
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-39 Score=314.56 Aligned_cols=204 Identities=25% Similarity=0.310 Sum_probs=168.3
Q ss_pred HHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCC---------ccc-ccEEEecCCC
Q psy10366 10 KNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF---------KEM-YPVVFKIGHA 79 (340)
Q Consensus 10 r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~---------~~~-~PvVvKp~~G 79 (340)
..+++.+|..|++|||++++|.+|.|| ..+.++|.+.| +|+ |.|.+... +.+ ||+|+||+.|
T Consensus 94 ~~~~~~~E~~G~~viN~p~~i~~~~nK----~~~~~~l~~~~---ipv-P~T~i~~~~~~~~~~~~~~~g~pvVlKp~~G 165 (318)
T COG0189 94 TRFLRLAERKGVPVINDPQSIRRCRNK----LYTTQLLAKAG---IPV-PPTLITRDPDEAAEFVAEHLGFPVVLKPLDG 165 (318)
T ss_pred HHHHHHHHHcCCeEECCHHHHHhhhhH----HHHHHHHHhcC---CCC-CCEEEEcCHHHHHHHHHHhcCCCEEEeeCCC
Confidence 457889999999999999999999999 44455588999 573 44443222 123 8999999999
Q ss_pred CcccceEEecChh-hHHHHHHHHHhhC-ceEEeecCCC-CC-CcEEEEEECCeEEEEE---EEecCCCcccccC-Cceee
Q psy10366 80 HSGFGKVRVESNQ-DFQDMAGVVAVAN-TYCTTEPYID-SK-FDVHVQKIGSNYKAFQ---RKSISGNWKTNTG-SAMLE 151 (340)
Q Consensus 80 s~G~Gv~lv~~~~-~l~~i~~~l~~~~-~~~~vQefI~-~g-~DIRv~VIG~~v~A~~---R~s~~~~WktNvg-ga~~e 151 (340)
+||+||.|++|.+ ++..+.+.+.... .++++||||+ ++ .|.||+|+|+.++|++ |...+++||+|++ ||..+
T Consensus 166 s~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~~~~rrivv~~~~~~~~y~~~R~~~~~~~R~N~a~Gg~~e 245 (318)
T COG0189 166 SGGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAIYALARIPASGDFRSNLARGGRAE 245 (318)
T ss_pred CCccceEEecCCChhHHHHHHHHhccccceEehhhhcCcccCCcEEEEEeCCEEeEEeeeccccCCCCceeecccccccc
Confidence 9999999999999 8888887766443 4688999999 45 4666666666777744 5456899999997 89999
Q ss_pred ecCCChHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCccccc-ccchhHHHHHHHHHHHHHHHhhcC
Q psy10366 152 QIPMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLM-GETQEEDRRFIVDLVIQKMQVSVL 225 (340)
Q Consensus 152 ~~~~~ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~-~g~~~~~~~~IA~~vi~~i~~~~~ 225 (340)
++++++|.+++|.+|++++ |++|+|||++++++| +||+|||+| |.+ ++++.+++.++|+.+++++++.++
T Consensus 246 ~~~l~~e~~elA~kaa~~l-Gl~~~GVDiie~~~g-~~V~EVN~s--P~~~~~i~~~~g~~~~~~~~~~ie~~~~ 316 (318)
T COG0189 246 PCELTEEEEELAVKAAPAL-GLGLVGVDIIEDKDG-LYVTEVNVS--PTGKGEIERVTGVNIAGLIIDAIEKFVR 316 (318)
T ss_pred ccCCCHHHHHHHHHHHHHh-CCeEEEEEEEecCCC-cEEEEEeCC--CccccchhhhcCCchHHHHHHHHHHHHh
Confidence 9999999999999999998 999999999999776 899999998 855 558888889999999999987654
No 4
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=100.00 E-value=3.3e-36 Score=271.17 Aligned_cols=176 Identities=24% Similarity=0.334 Sum_probs=104.0
Q ss_pred cCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc--------cc--ccEEEecCCCCcccceEEecChhhHHHHHHHHH
Q psy10366 33 FQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK--------EM--YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVA 102 (340)
Q Consensus 33 ~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~--------~~--~PvVvKp~~Gs~G~Gv~lv~~~~~l~~i~~~l~ 102 (340)
+.|| ..++++|+++| +| +|.|+..... ++ +|+|+||..|++|.||.++++.+++..+++.+.
T Consensus 1 a~dK----~~~~~~l~~~g---ip-vP~t~~~~~~~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~ 72 (190)
T PF08443_consen 1 AEDK----LLTLQLLAKAG---IP-VPETRVTNSPEEAKEFIEELGGFPVVIKPLRGSSGRGVFLINSPDELESLLDAFK 72 (190)
T ss_dssp -HBH----HHHHHHHHHTT---------EEEESSHHHHHHHHHHH--SSEEEE-SB-------EEEESHCHHHHHHH---
T ss_pred CCCH----HHHHHHHHHCC---cC-CCCEEEECCHHHHHHHHHHhcCCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHH
Confidence 4699 45556689999 68 4666554332 12 799999999999999999999999999988766
Q ss_pred hhCceEEeecCCCC--CCcEEEEEECCeEEE-EEEEecCCCcccccC-CceeeecCCChHHHHHHHHHHHHhCCCcEEEE
Q psy10366 103 VANTYCTTEPYIDS--KFDVHVQKIGSNYKA-FQRKSISGNWKTNTG-SAMLEQIPMTDHYKLWIDEVAELFGGLDICAL 178 (340)
Q Consensus 103 ~~~~~~~vQefI~~--g~DIRv~VIG~~v~A-~~R~s~~~~WktNvg-ga~~e~~~~~ee~~~~a~~aa~a~~GldiaGV 178 (340)
..+..+++|+||+. |+|+||+||||++++ +.|.+.+++||+|++ |+..+++.++++++++|.++++++ |++||||
T Consensus 73 ~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~~~d~r~n~~~g~~~~~~~l~~e~~~~a~~~~~~l-gl~~~gi 151 (190)
T PF08443_consen 73 RLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSPEGDFRTNLSRGGKVEPYDLPEEIKELALKAARAL-GLDFAGI 151 (190)
T ss_dssp --TTT-EEEE----SS---EEEEEETTEEEEEEE------------------EE----HHHHHHHHHHHHHT-T-SEEEE
T ss_pred hccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecCcccchhhhccCceEEEecCCHHHHHHHHHHHHHh-CCCEEEE
Confidence 55666678999994 489999999999875 666666779999996 778899999999999999999998 9999999
Q ss_pred eEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHH
Q psy10366 179 EIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKM 220 (340)
Q Consensus 179 Dll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i 220 (340)
|++.+++ +++|+|||++ |+|.++++.++.+|++.|++||
T Consensus 152 Di~~~~~-~~~v~EvN~~--~~~~~~~~~~g~~i~~~i~~yi 190 (190)
T PF08443_consen 152 DILDTND-GPYVLEVNPN--PGFRGIEEATGIDIAEEIAEYI 190 (190)
T ss_dssp EEEEETT-EEEEEEEETT-----TTHHHHH---HHHHHHHH-
T ss_pred EEEecCC-CeEEEEecCC--chHhHHHHHHCcCHHHHHHhhC
Confidence 9888765 5999999998 9999999999999999999986
No 5
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=100.00 E-value=3.5e-35 Score=281.15 Aligned_cols=203 Identities=20% Similarity=0.269 Sum_probs=172.7
Q ss_pred HHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCC-c-------cc--ccEEEecCCCC
Q psy10366 11 NLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF-K-------EM--YPVVFKIGHAH 80 (340)
Q Consensus 11 ~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~-~-------~~--~PvVvKp~~Gs 80 (340)
+.+..||.+|++++|++.++.+|.|| ..+.++|+++| +|+ |.+..... . .+ ||+||||..|+
T Consensus 75 ~~~~~le~~g~~v~n~~~a~~~~~dK----~~~~~~l~~~g---ip~-P~t~~~~~~~~~~~~~~~~~~~P~VvKP~~g~ 146 (300)
T PRK10446 75 AALRQFEMLGSYPLNESVAIARARDK----LRSMQLLARQG---IDL-PVTGIAHSPDDTSDLIDMVGGAPLVVKLVEGT 146 (300)
T ss_pred HHHHHHHHCCCceecCHHHHHhhhcH----HHHHHHHHHcC---CCC-CCEEEeCCHHHHHHHHHHhCCCCEEEEECCCC
Confidence 35788999999999999999999999 44555689999 684 44433211 1 12 69999999999
Q ss_pred cccceEEecChhhHHHHHHHHHhhCceEEeecCCC--CCCcEEEEEECCeEEE-EEEEecCCCcccccC-CceeeecCCC
Q psy10366 81 SGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYID--SKFDVHVQKIGSNYKA-FQRKSISGNWKTNTG-SAMLEQIPMT 156 (340)
Q Consensus 81 ~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~--~g~DIRv~VIG~~v~A-~~R~s~~~~WktNvg-ga~~e~~~~~ 156 (340)
+|.||.++++.++++.+.+.+......+++||||+ .|+|+||.|+|+++++ +.|.+..++|++|+. |+..++++++
T Consensus 147 ~g~GV~~v~~~~~~~~~~~~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r~~~~~~~~~n~~~g~~~~~~~l~ 226 (300)
T PRK10446 147 QGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEGDFRSNLHRGGAASVASIT 226 (300)
T ss_pred CcccEEEEcCHHHHHHHHHHHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEEecCCCchhheeccCCeeccCCCC
Confidence 99999999999999998887754555678999997 5999999999999865 555554679999986 6777788999
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHHHhhcC
Q psy10366 157 DHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVL 225 (340)
Q Consensus 157 ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i~~~~~ 225 (340)
++.+++|.+|++++ |++|+|||++++++| +||+|||.+ |+|.++++.++.++++++++++++.+.
T Consensus 227 ~~~~~~a~~a~~al-g~~~~gvD~~~~~~g-~~vlEvN~~--pg~~~~~~~~g~~~~~~~~~~i~~~~~ 291 (300)
T PRK10446 227 PQEREIAIKAARTM-ALDVAGVDILRANRG-PLVMEVNAS--PGLEGIEKTTGIDIAGKMIRWIERHAT 291 (300)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEEEEcCCC-cEEEEEECC--CChhhhHHHHCcCHHHHHHHHHHHhcc
Confidence 99999999999998 899999999999887 799999987 999999999999999999999998764
No 6
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=100.00 E-value=4e-32 Score=255.28 Aligned_cols=202 Identities=21% Similarity=0.242 Sum_probs=168.4
Q ss_pred HHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccC-CCc-------cc-ccEEEecCCCC
Q psy10366 10 KNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYP-NFK-------EM-YPVVFKIGHAH 80 (340)
Q Consensus 10 r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~-~~~-------~~-~PvVvKp~~Gs 80 (340)
..+...||..|+|++|+++++..|.||. .+.++|+++| +|+ |.++.. ... .+ ||+|+||..|+
T Consensus 62 ~~~~~~le~~g~~~~n~~~~~~~~~dK~----~~~~~l~~~g---ip~-P~t~~~~~~~~~~~~~~~~~~P~vvKP~~g~ 133 (280)
T TIGR02144 62 LYSARLLEALGVPVINSSHVIEACGDKI----FTYLKLAKAG---VPT-PRTYLAFDREAALKLAEALGYPVVLKPVIGS 133 (280)
T ss_pred HHHHHHHHHCCCcEECcHHHHHHHhhHH----HHHHHHHHCC---cCC-CCeEeeCCHHHHHHHHHHcCCCEEEEECcCC
Confidence 4567779999999999999999999994 4444588999 684 444432 211 23 89999999999
Q ss_pred cccceEEecChhhHHHHHHHHHh----hCceEEeecCCC-CCCcEEEEEECCeEE-EEEEEecCCCcccccC-Cceeeec
Q psy10366 81 SGFGKVRVESNQDFQDMAGVVAV----ANTYCTTEPYID-SKFDVHVQKIGSNYK-AFQRKSISGNWKTNTG-SAMLEQI 153 (340)
Q Consensus 81 ~G~Gv~lv~~~~~l~~i~~~l~~----~~~~~~vQefI~-~g~DIRv~VIG~~v~-A~~R~s~~~~WktNvg-ga~~e~~ 153 (340)
+|+|+.++++.+++..+...... ....+++||||+ .++|+|++|+|+++. ++.|. +++|++|.+ ++...++
T Consensus 134 ~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~--~~~~~~~~~~g~~~~~~ 211 (280)
T TIGR02144 134 WGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRY--SNHWRTNTARGGKAEPC 211 (280)
T ss_pred CcCCEEEECCHHHHHHHHHHHHhhcCCcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEc--CCchhhhhhcCCceecc
Confidence 99999999999998876643321 124577899999 599999999999976 56665 388999986 6677888
Q ss_pred CCChHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHHHhhc
Q psy10366 154 PMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSV 224 (340)
Q Consensus 154 ~~~ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i~~~~ 224 (340)
+++++++++|.++++++ |++++|||++.+++|+++|+|||.. |+|.+++..++.++++++++++...+
T Consensus 212 ~~~~~~~~~a~~~~~~l-g~~~~~vD~~~~~~g~~~v~EvN~~--p~~~~~~~~~g~~~~~~~~~~~~~~~ 279 (280)
T TIGR02144 212 PLDEEVEELAVKAAEAV-GGGVVAIDIFESKERGLLVNEVNHV--PEFKNSVRVTGVNVAGEILEYAVSLV 279 (280)
T ss_pred CCCHHHHHHHHHHHHHh-CCCeEEEEEEEcCCCCEEEEEEeCC--cchhhhhHhhCCCHHHHHHHHHHHhh
Confidence 99999999999999998 7999999999998888999999988 99999999999999999999998754
No 7
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=100.00 E-value=9.7e-33 Score=266.89 Aligned_cols=196 Identities=19% Similarity=0.231 Sum_probs=156.7
Q ss_pred HHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc----cc----ccEEEecCCCCc
Q psy10366 10 KNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK----EM----YPVVFKIGHAHS 81 (340)
Q Consensus 10 r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~----~~----~PvVvKp~~Gs~ 81 (340)
..+|+.||..|++++|++.+|..|.||.++ ++++ . | +|.|...+.. ++ .|+|+||+.|++
T Consensus 98 ~~~l~~le~~g~~viN~p~~i~~~~dK~~~----~~~~---~----~-vP~T~v~~~~~~~~~~~~~~g~vVvKPl~G~~ 165 (312)
T TIGR01380 98 TYLLELADPTGTLVINSPQGLRDANEKLFT----LQFP---K----V-IPPTLVTRDKAEIRAFLAEHGDIVLKPLDGMG 165 (312)
T ss_pred HHHHHHHHhCCCeEEeCHHHHHhhhhHHHH----hhCc---C----C-CCCEEEeCCHHHHHHHHHHcCCEEEEECCCCC
Confidence 468999999999999999999999999432 2222 2 3 3345443221 11 699999999999
Q ss_pred ccceEEecCh-hhHHHHHHHHHhh-CceEEeecCCCC--CCcEEEEEECCeEE--EEEEEecCCCcccccC-CceeeecC
Q psy10366 82 GFGKVRVESN-QDFQDMAGVVAVA-NTYCTTEPYIDS--KFDVHVQKIGSNYK--AFQRKSISGNWKTNTG-SAMLEQIP 154 (340)
Q Consensus 82 G~Gv~lv~~~-~~l~~i~~~l~~~-~~~~~vQefI~~--g~DIRv~VIG~~v~--A~~R~s~~~~WktNvg-ga~~e~~~ 154 (340)
|.|+.++++. ..+..+.+.+... ...+++|+||+. +.|+||+||||+++ |+.|.+..|+||+|++ ||..++++
T Consensus 166 G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~~~~D~Rv~vv~g~vv~~ai~R~~~~gd~r~N~~~Gg~~~~~~ 245 (312)
T TIGR01380 166 GEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEIKEGDKRILLIDGEPIGAAVARIPAGGEFRGNLAVGGRGEATE 245 (312)
T ss_pred CceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccccCCCEEEEEECCeEEEEEEEecCCCCCccccccCCceeeccC
Confidence 9999999863 3566666665533 346778999983 68999999999975 4556655679999996 78999999
Q ss_pred CChHHHHHHHHHH---HHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHHHhh
Q psy10366 155 MTDHYKLWIDEVA---ELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVS 223 (340)
Q Consensus 155 ~~ee~~~~a~~aa---~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i~~~ 223 (340)
++++.+++|.+++ +.. |++|+|||+| | ++|+|||.++.++|.+++..++.+||+.+++++++.
T Consensus 246 l~~e~~~ia~~~~~~~~~~-gl~~agVDii----g-~~v~EvN~~~p~~~~~~~~~~g~~ia~~i~d~l~~~ 311 (312)
T TIGR01380 246 LSERDREICADVAPELKRR-GLLFVGIDVI----G-GYLTEVNVTSPTGIREIDRQKGVNIAGMLWDAIEKA 311 (312)
T ss_pred CCHHHHHHHHHHHHHHHhc-CCcEEEEEEe----C-CEEEEEecCCcchHHHHHhhhCCCHHHHHHHHHHhh
Confidence 9999999999987 444 9999999999 3 479999975557999999999999999999999875
No 8
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=100.00 E-value=6.8e-32 Score=262.99 Aligned_cols=183 Identities=11% Similarity=0.151 Sum_probs=146.6
Q ss_pred ChHHHHHH--HHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCC----CCCCcccccccCCCc-----------cc-
Q psy10366 8 DHKNLLLG--FNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGK----ENFPLIDITYYPNFK-----------EM- 69 (340)
Q Consensus 8 ~~r~vl~~--le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~----~~~P~~~~t~~~~~~-----------~~- 69 (340)
.||..+.. +|..|+++||++++|++|.|| ..++++|+++|+ ..|| +|.++..... .+
T Consensus 78 ~~~~~~~~~~~e~pgv~vidp~~ai~~~~dR----~~~~~~L~~~~~~~~~~~i~-~P~t~v~~~~~~al~~~~~~~~l~ 152 (328)
T PLN02941 78 EWRQQLEEYREKHPDVTVLDPPDAIQRLHNR----QSMLQVVADLKLSDGYGSVG-VPKQLVVYDDESSIPDAVALAGLK 152 (328)
T ss_pred HHHHHHHHHHHHCCCcEEECCHHHHHHHHHH----HHHHHHHHHcCCcccCCCCC-CCCEEEEcCHHHHHHHHHHHhcCC
Confidence 35666554 899999999999999999999 555566888883 1257 5555543221 22
Q ss_pred ccEEEecCCC---CcccceEEecChhhHHHHHHHHHhhCceEEeecCCC-CCCcEEEEEECCeEEEEEEEecCCCcc---
Q psy10366 70 YPVVFKIGHA---HSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYID-SKFDVHVQKIGSNYKAFQRKSISGNWK--- 142 (340)
Q Consensus 70 ~PvVvKp~~G---s~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~-~g~DIRv~VIG~~v~A~~R~s~~~~Wk--- 142 (340)
||+|+||+.| +||+++.++.|++.|+.+ +..+++||||+ .|+||||||||+++.|++|+| ..||+
T Consensus 153 ~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~l-------~~p~~lQEfVnh~g~d~RVfVvGd~v~~~~R~S-~~n~~~~~ 224 (328)
T PLN02941 153 FPLVAKPLVADGSAKSHKMSLAYDQEGLSKL-------EPPLVLQEFVNHGGVLFKVYVVGDYVKCVRRFS-LPDVSEEE 224 (328)
T ss_pred CCEEEeecccCCCccccceEEecCHHHHHhc-------CCcEEEEEecCCCCEEEEEEEECCEEEEEEecC-Cccccccc
Confidence 9999999999 999999999999987762 23467899999 699999999999998888876 45777
Q ss_pred cccC-C----------------ce-------eeecCCChHHHHHHHHHHHHhCCCcEEEEeEEEcCC--CCeEEEeecCC
Q psy10366 143 TNTG-S----------------AM-------LEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGKD--GKEHIIEVNDS 196 (340)
Q Consensus 143 tNvg-g----------------a~-------~e~~~~~ee~~~~a~~aa~a~~GldiaGVDll~~~d--G~~~VlEVN~s 196 (340)
+|++ | +. ..+++.+++++++|.++.+++ |++++|||+|++.+ ++|+|+|||..
T Consensus 225 ~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~~~l~~La~~~r~al-Gl~l~GvDvI~~~~~~~~~~VidVN~f 303 (328)
T PLN02941 225 LSSAEGVLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLARELRRRL-GLRLFNFDMIREHGTGDRYYVIDINYF 303 (328)
T ss_pred ccccccccccccccccccccccccccccccccccCCChHHHHHHHHHHHHHh-CCceEEEEEEeecCCCCceEEEEecCC
Confidence 8886 3 22 445677889999999999998 99999999999863 47899999976
Q ss_pred cccccccchh
Q psy10366 197 ALSLMGETQE 206 (340)
Q Consensus 197 ~~P~~~g~~~ 206 (340)
|+|++...
T Consensus 304 --P~~k~~p~ 311 (328)
T PLN02941 304 --PGYAKMPG 311 (328)
T ss_pred --CccccCCc
Confidence 99998764
No 9
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.98 E-value=1.5e-31 Score=249.13 Aligned_cols=199 Identities=23% Similarity=0.279 Sum_probs=167.1
Q ss_pred HHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCC-c-------cc-ccEEEecCCCC
Q psy10366 10 KNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF-K-------EM-YPVVFKIGHAH 80 (340)
Q Consensus 10 r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~-~-------~~-~PvVvKp~~Gs 80 (340)
..+++.|+..|+|++|+++++..|.||. .+.++|+++| +|+ |.++.... . .+ ||+|+||..|+
T Consensus 63 ~~~~~~l~~~g~~~~~~~~~~~~~~dK~----~~~~~l~~~g---i~~-P~t~~~~~~~~~~~~~~~~~~p~vvKP~~g~ 134 (277)
T TIGR00768 63 LAVARYLESLGVPVINSSDAILNAGDKF----LTSQLLAKAG---LPQ-PRTGLAGSPEEALKLIEEIGFPVVLKPVFGS 134 (277)
T ss_pred HHHHHHHHHCCCeeeCCHHHHHHHhhHH----HHHHHHHHCC---CCC-CCEEEeCCHHHHHHHHHhcCCCEEEEECcCC
Confidence 3678889999999999999999999994 4444588999 684 44443221 1 22 79999999999
Q ss_pred cccceEEecChhhHHHHHHHHHhhC---ceEEeecCCC-C-CCcEEEEEECCeEEE-EEEEecCCCcccccC-Cceeeec
Q psy10366 81 SGFGKVRVESNQDFQDMAGVVAVAN---TYCTTEPYID-S-KFDVHVQKIGSNYKA-FQRKSISGNWKTNTG-SAMLEQI 153 (340)
Q Consensus 81 ~G~Gv~lv~~~~~l~~i~~~l~~~~---~~~~vQefI~-~-g~DIRv~VIG~~v~A-~~R~s~~~~WktNvg-ga~~e~~ 153 (340)
+|.|+.++++.+++..+...+.... ..+++||||+ . ++|+||+++||++.+ +.|. .+++|++|+. ++..+++
T Consensus 135 ~g~gv~~i~~~~~l~~~~~~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~-~~~~~~~n~~~g~~~~~~ 213 (277)
T TIGR00768 135 WGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRI-TSGHWRTNLARGGKAEPC 213 (277)
T ss_pred CCCceEEEcCHHHHHHHHHHHHHhcccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEc-CCCchhhhhhcCCeeeec
Confidence 9999999999999988777655332 2467899999 3 589999999999865 5554 4789999986 6677889
Q ss_pred CCChHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHH
Q psy10366 154 PMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKM 220 (340)
Q Consensus 154 ~~~ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i 220 (340)
++++++++++.++++++ |++++|||++.+++|+++|+|||.. |++.++...++.++++.+++++
T Consensus 214 ~l~~~~~~~a~~~~~~l-~~~~~~vD~~~~~~g~~~viEiN~~--p~~~~~~~~~g~~l~~~~~~~~ 277 (277)
T TIGR00768 214 PLTEEIEELAIKAAKAL-GLDVVGIDLLESEDRGLLVNEVNPN--PEFKNSVKTTGVNIAGKLLDYI 277 (277)
T ss_pred CCCHHHHHHHHHHHHHh-CCCeEEEEEEEcCCCCeEEEEEcCC--cchhhhHHHHCCCHHHHHHhhC
Confidence 99999999999999998 8899999999999999999999987 9999999999999999999874
No 10
>PRK05246 glutathione synthetase; Provisional
Probab=99.98 E-value=1.4e-31 Score=258.70 Aligned_cols=197 Identities=16% Similarity=0.199 Sum_probs=157.3
Q ss_pred HHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc----cc----ccEEEecCCCCcc
Q psy10366 11 NLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK----EM----YPVVFKIGHAHSG 82 (340)
Q Consensus 11 ~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~----~~----~PvVvKp~~Gs~G 82 (340)
.+++.||..|++++|++.+|.+|.||.++ ++++. .+| .|...... ++ .|+|+||+.|++|
T Consensus 100 ~~l~~le~~g~~v~N~p~~l~~~~dK~~~----~~l~~-----~vP---~T~~~~~~~~~~~~~~~~~~vVlKP~~G~~G 167 (316)
T PRK05246 100 YLLERAERPGTLVVNKPQSLRDANEKLFT----LWFPE-----LMP---PTLVTRDKAEIRAFRAEHGDIILKPLDGMGG 167 (316)
T ss_pred HHHHHHHhCCCeEECCHHHHHhCccHHHH----Hhhhc-----cCC---CEEEeCCHHHHHHHHHHCCCEEEEECCCCCc
Confidence 38899999999999999999999999443 22222 144 34332221 22 6999999999999
Q ss_pred cceEEecC-hhhHHHHHHHHHhh-CceEEeecCCCC--CCcEEEEEECCeEEE--EEEEecCCCcccccC-CceeeecCC
Q psy10366 83 FGKVRVES-NQDFQDMAGVVAVA-NTYCTTEPYIDS--KFDVHVQKIGSNYKA--FQRKSISGNWKTNTG-SAMLEQIPM 155 (340)
Q Consensus 83 ~Gv~lv~~-~~~l~~i~~~l~~~-~~~~~vQefI~~--g~DIRv~VIG~~v~A--~~R~s~~~~WktNvg-ga~~e~~~~ 155 (340)
+|+.++++ ..++..+.+.+... +..+++|+||+. +.|+||+|+||++++ |.|.+..++||||++ ||..+++++
T Consensus 168 ~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~~~D~Rv~vv~g~vv~~a~~R~~~~~~~rtN~~~Gg~~~~~~l 247 (316)
T PRK05246 168 AGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIKEGDKRILLVDGEPVGYALARIPAGGETRGNLAAGGRGEATPL 247 (316)
T ss_pred cceEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCCCCCEEEEEECCEEhhheeEecCCCCCcccCccCCceEeccCC
Confidence 99999955 45677777766543 356678999984 789999999999864 666665689999996 789999999
Q ss_pred ChHHHHHHHHHHH---HhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHHHhhcC
Q psy10366 156 TDHYKLWIDEVAE---LFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVL 225 (340)
Q Consensus 156 ~ee~~~~a~~aa~---a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i~~~~~ 225 (340)
+++.+++|.++++ .. |+.|+|||++ |. +|+|||.++.++|.+++..++.+||+.+++++++.+.
T Consensus 248 ~~~~~~ia~~~~~~l~~~-gl~~~GVDli----~~-~l~EvN~~~p~~~~~~~~~tg~~ia~~i~~~~~~~~~ 314 (316)
T PRK05246 248 TERDREICAAIGPELKER-GLIFVGIDVI----GD-YLTEINVTSPTGIREIERLTGVDIAGMLWDAIEAKLA 314 (316)
T ss_pred CHHHHHHHHHHHHHHHHh-CCCEEEEEEe----CC-EEEEEeCCCchHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 9999999999884 55 8999999999 33 6999996433699999999999999999999998764
No 11
>PRK12458 glutathione synthetase; Provisional
Probab=99.97 E-value=2.8e-30 Score=252.61 Aligned_cols=199 Identities=17% Similarity=0.232 Sum_probs=156.9
Q ss_pred hHHHHHHH--------HhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc--------cc-c-
Q psy10366 9 HKNLLLGF--------NIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK--------EM-Y- 70 (340)
Q Consensus 9 ~r~vl~~l--------e~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~--------~~-~- 70 (340)
|.+.++++ |..|++++|++++|.+|.||.++ ..++ +.. +| .|+..... +. +
T Consensus 95 ~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~----~~l~-~~~---vP---~T~v~~~~~~~~~~~~~~~~~ 163 (338)
T PRK12458 95 ARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYF----QSFP-EEV---RP---TTHISRNKEYIREFLEESPGD 163 (338)
T ss_pred HHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHH----Hhhc-cCC---CC---CEEEeCCHHHHHHHHHHcCCC
Confidence 66666655 78899999999999999999433 2222 221 34 44332221 12 4
Q ss_pred cEEEecCCCCcccceEEecChh--hHHHHHHHHHhhCceEEeecCCC--CCCcEEEEEECCeEE------E-EEEEecCC
Q psy10366 71 PVVFKIGHAHSGFGKVRVESNQ--DFQDMAGVVAVANTYCTTEPYID--SKFDVHVQKIGSNYK------A-FQRKSISG 139 (340)
Q Consensus 71 PvVvKp~~Gs~G~Gv~lv~~~~--~l~~i~~~l~~~~~~~~vQefI~--~g~DIRv~VIG~~v~------A-~~R~s~~~ 139 (340)
|+|+||+.|++|.||.++++.+ .+..+++.+.. ..++++||||+ .++|+||+++||+++ + +.|.+..+
T Consensus 164 pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~-~~~~ivQeyI~~~~~gDiRv~vv~g~~v~~~g~~~a~~R~~~~~ 242 (338)
T PRK12458 164 KMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSG-DGYVIAQEYLPGAEEGDVRILLLNGEPLERDGHYAAMRRVPAGG 242 (338)
T ss_pred eEEEEECCCCCccCeEEEecCChhhHHHHHHHHhh-CCCEEEEEcccCCCCCCEEEEEECCEEEeeccceeEEEEecCCC
Confidence 4999999999999999998777 47777776654 34677899998 378999999999988 5 55555578
Q ss_pred CcccccC-CceeeecCCChHHHHHHHHHHHHh--CCCcEEEEeEEEcCCCCeEEEeecCCccc-ccccchhHHHHHHHHH
Q psy10366 140 NWKTNTG-SAMLEQIPMTDHYKLWIDEVAELF--GGLDICALEIIVGKDGKEHIIEVNDSALS-LMGETQEEDRRFIVDL 215 (340)
Q Consensus 140 ~WktNvg-ga~~e~~~~~ee~~~~a~~aa~a~--~GldiaGVDll~~~dG~~~VlEVN~s~~P-~~~g~~~~~~~~IA~~ 215 (340)
+||+|++ ||..++++++++.+++|.+++.++ .||.|+|||++ | .+|+|||..+ | ++.+++..++.|||+.
T Consensus 243 d~RsN~~~Gg~~~~~~l~~~~~~ia~~~~~~l~~~GL~~~gVDli----~-~~l~EIN~~s-p~g~~~~~~~~g~d~a~~ 316 (338)
T PRK12458 243 DVRSNVHAGGSVVKHTLTKEELELCEAIRPKLVRDGLFFVGLDIV----G-DKLVEVNVFS-PGGLTRINKLNKIDFVED 316 (338)
T ss_pred CeeecccCCCcccCcCCCHHHHHHHHHHHHHHhhcCCeEEeEEEE----C-CEEEEEeCCC-cchHHHHHHHhCCCHHHH
Confidence 9999996 788899999999999999987765 48999999998 2 2689999722 7 8899999999999999
Q ss_pred HHHHHHhhcC
Q psy10366 216 VIQKMQVSVL 225 (340)
Q Consensus 216 vi~~i~~~~~ 225 (340)
+++++++.++
T Consensus 317 i~~~i~~~~~ 326 (338)
T PRK12458 317 IIEALERKVQ 326 (338)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 12
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.95 E-value=9e-27 Score=226.05 Aligned_cols=178 Identities=16% Similarity=0.138 Sum_probs=130.0
Q ss_pred ccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc--------cc---c-cEEEecCCCCcccceEEecC
Q psy10366 23 SINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK--------EM---Y-PVVFKIGHAHSGFGKVRVES 90 (340)
Q Consensus 23 viNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~--------~~---~-PvVvKp~~Gs~G~Gv~lv~~ 90 (340)
-+|+-+.+-+|.|| +.+.++|+++| +| +|.|+..... ++ + |+|+||++|+||+|++++++
T Consensus 25 ~~N~r~~~~~~~DK----~~t~~lL~~ag---lp-vP~T~~~~s~~~~~~~l~~~~~~~~~VVVKPl~Gs~GrGI~~i~~ 96 (317)
T TIGR02291 25 RYNKRSLYPLVDDK----LKTKIIAQAAG---IT-VPELYGVIHNQAEVKTIHNIVKDHPDFVIKPAQGSGGKGILVITS 96 (317)
T ss_pred hcCCchhccccccH----HHHHHHHHHcC---CC-CCCEEEecCchhhHHHHHHHHccCCCEEEEECCCCCccCeEEEEe
Confidence 45778888899999 55567799999 68 5665543322 12 4 69999999999999999988
Q ss_pred hhhHH---------------H----HHHHH-Hhh--CceEEeecCCCCC-----------CcEEEEEECCeEE-EEEEEe
Q psy10366 91 NQDFQ---------------D----MAGVV-AVA--NTYCTTEPYIDSK-----------FDVHVQKIGSNYK-AFQRKS 136 (340)
Q Consensus 91 ~~~l~---------------~----i~~~l-~~~--~~~~~vQefI~~g-----------~DIRv~VIG~~v~-A~~R~s 136 (340)
.++.. . +.+.+ ... ..++++|++++.+ +||||+|+|++++ ||+|.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~~~vaa~~R~~ 176 (317)
T TIGR02291 97 RKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKGYPVMAMMRLP 176 (317)
T ss_pred ccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECCEEEEEEEEcc
Confidence 75422 2 11112 111 2344445444433 8999999999986 566764
Q ss_pred -cCCCcccccC-CceeeecCCC--------------------------------hHHHHHHHHHHHHhCCCcEEEEeEEE
Q psy10366 137 -ISGNWKTNTG-SAMLEQIPMT--------------------------------DHYKLWIDEVAELFGGLDICALEIIV 182 (340)
Q Consensus 137 -~~~~WktNvg-ga~~e~~~~~--------------------------------ee~~~~a~~aa~a~~GldiaGVDll~ 182 (340)
..++|++|++ ||+++++.+. ++..++|.+|++++ |++|+|||++.
T Consensus 177 ~~~~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~-g~~~~GvDii~ 255 (317)
T TIGR02291 177 TRASDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELT-GLGYMGVDMVL 255 (317)
T ss_pred CccCCcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhc-CCCeEEEEEEE
Confidence 2468999997 7888866654 78899999999987 88999999999
Q ss_pred cCCCCeEEEeecCCcccccccchhHHHHHH
Q psy10366 183 GKDGKEHIIEVNDSALSLMGETQEEDRRFI 212 (340)
Q Consensus 183 ~~dG~~~VlEVN~s~~P~~~g~~~~~~~~I 212 (340)
+.+|+++|+|||.. |++. .+.+.+.-+
T Consensus 256 ~~~~g~~VlEVN~~--Pg~t-~~~a~~~Gl 282 (317)
T TIGR02291 256 DKEEGPLVLELNAR--PGLA-IQIANGAGL 282 (317)
T ss_pred eCCCCEEEEEeCCC--CCCC-HHHHHHCCC
Confidence 87777999999977 9997 555443333
No 13
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.94 E-value=5.9e-26 Score=234.89 Aligned_cols=183 Identities=15% Similarity=0.168 Sum_probs=145.9
Q ss_pred ccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCC-Ccc-------cccEEEecCCCCcccceEE-ecChhh
Q psy10366 23 SINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPN-FKE-------MYPVVFKIGHAHSGFGKVR-VESNQD 93 (340)
Q Consensus 23 viNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~-~~~-------~~PvVvKp~~Gs~G~Gv~l-v~~~~~ 93 (340)
.+||+.++.+|.|| ..+.++|+++| ||+ |.++... .++ +.|+||||..|++|+|+.+ +++.++
T Consensus 285 ~~~s~~ai~~~~DK----~~tk~lL~~aG---IpV-P~~~~~~~~~~~~~~~~~~G~vVVKP~~G~~G~Gv~v~v~~~~e 356 (547)
T TIGR03103 285 ELTSAVAMSLCDDK----RLTRRLVSEAG---LQV-PEQQLAGNGEAVEAFLAEHGAVVVKPVRGEQGKGISVDVRTPDD 356 (547)
T ss_pred CCCCHHHHHHhcCH----HHHHHHHHHcC---cCC-CCEEEECCHHHHHHHHHHhCCEEEEECCCCCCcCeEEecCCHHH
Confidence 55999999999999 56667799999 684 4444322 211 2789999999999999997 999999
Q ss_pred HHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCeEEE-EEEEecC--CCc-----------------------------
Q psy10366 94 FQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKA-FQRKSIS--GNW----------------------------- 141 (340)
Q Consensus 94 l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~v~A-~~R~s~~--~~W----------------------------- 141 (340)
++...+........+++|+|| +|+|+|++|||++++| |+|+... ||+
T Consensus 357 L~~a~~~a~~~~~~vlvEe~i-~G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~ 435 (547)
T TIGR03103 357 LEAAIAKARQFCDRVLLERYV-PGEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDA 435 (547)
T ss_pred HHHHHHHHHhcCCcEEEEEec-cCCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHHHHHHhcCccCCCCCcCccCCCH
Confidence 988887765555677899999 4899999999999875 6666431 333
Q ss_pred ---------------------------ccccC-Cceeeec--CCChHHHHHHHHHHHHhCCCcEEEEeEEEcC-CC-CeE
Q psy10366 142 ---------------------------KTNTG-SAMLEQI--PMTDHYKLWIDEVAELFGGLDICALEIIVGK-DG-KEH 189 (340)
Q Consensus 142 ---------------------------ktNvg-ga~~e~~--~~~ee~~~~a~~aa~a~~GldiaGVDll~~~-dG-~~~ 189 (340)
++|++ ||..+.+ ++.++++++|.+|++++ ||+|||||+|... ++ .++
T Consensus 436 ~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~~-gl~~~GvD~i~~~~~~p~~~ 514 (547)
T TIGR03103 436 ETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARAL-DIPVVGIDFLVPDVTGPDYV 514 (547)
T ss_pred HHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHHh-CCCeEEEEEEeccCCCCCeE
Confidence 57775 6677776 68999999999999998 9999999999753 22 468
Q ss_pred EEeecCCcccccccchhHHHHHHHHHHHHHH
Q psy10366 190 IIEVNDSALSLMGETQEEDRRFIVDLVIQKM 220 (340)
Q Consensus 190 VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i 220 (340)
|||||++ |+|..++ .+++|+.+++++
T Consensus 515 iiEvN~~--Pgl~~h~---~~~~~~~~~d~l 540 (547)
T TIGR03103 515 IIEANER--PGLANHE---PQPTAERFIDLL 540 (547)
T ss_pred EEEecCC--ccccccC---CCchHHHHHHHh
Confidence 9999988 9999995 478888888776
No 14
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.92 E-value=5e-24 Score=226.94 Aligned_cols=187 Identities=18% Similarity=0.239 Sum_probs=149.3
Q ss_pred cCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc-ccEEEecCCCCcccceEE-ecChhhH
Q psy10366 24 INTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM-YPVVFKIGHAHSGFGKVR-VESNQDF 94 (340)
Q Consensus 24 iNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~PvVvKp~~Gs~G~Gv~l-v~~~~~l 94 (340)
-+|+.++.+|.|| ..+.++|+++| ||+++...+...+ ++ ||+|+||..|++|+||.+ ++|++++
T Consensus 203 ~~s~~a~~i~~DK----~~tk~lL~~~G---IPvP~~~~v~s~~~a~~~a~~iG~PvVVKP~~G~~G~GV~~~v~~~~el 275 (727)
T PRK14016 203 QTSAIAVDIACDK----ELTKRLLAAAG---VPVPEGRVVTSAEDAWEAAEEIGYPVVVKPLDGNHGRGVTVNITTREEI 275 (727)
T ss_pred CCcHHHHHHhCCH----HHHHHHHHHCC---cCCCCeeEeCCHHHHHHHHHHcCCCEEEEECCCCCCCceEEecCCHHHH
Confidence 6788999999999 56666799999 6854433232222 23 999999999999999998 9999999
Q ss_pred HHHHHHHHhhCceEEeecCCCCCCcEEEEEECCeEEEEEEEecCCC----------------------------------
Q psy10366 95 QDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQRKSISGN---------------------------------- 140 (340)
Q Consensus 95 ~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~v~A~~R~s~~~~---------------------------------- 140 (340)
+...+........+++|+||+ |+|+||+|+||+++|++||- +.+
T Consensus 276 ~~a~~~a~~~~~~viVEe~I~-G~d~Rv~Vvgg~vvaa~~r~-~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~~l~~i~ 353 (727)
T PRK14016 276 EAAYAVASKESSDVIVERYIP-GKDHRLLVVGGKLVAAARRE-PPHVIGDGKHTIRELIEIVNQDPRRGEGHEKPLTKIK 353 (727)
T ss_pred HHHHHHHHHhCCeEEEEEecC-CceEEEEEECCEEEEEEEec-CcEEecCCcccHHHHHHHhhcCccccccccCcccccC
Confidence 988877655456778999996 89999999999998766653 222
Q ss_pred -----------------------------cccccC-CceeeecC--CChHHHHHHHHHHHHhCCCcEEEEeEEEcC----
Q psy10366 141 -----------------------------WKTNTG-SAMLEQIP--MTDHYKLWIDEVAELFGGLDICALEIIVGK---- 184 (340)
Q Consensus 141 -----------------------------WktNvg-ga~~e~~~--~~ee~~~~a~~aa~a~~GldiaGVDll~~~---- 184 (340)
|++|+. ||..+.++ +.++.+++|.+|++++ |++|||||++...
T Consensus 354 ~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~aa~~~-gl~~~GvDi~~~di~~p 432 (727)
T PRK14016 354 LDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAERAAKII-GLDIAGVDVVCEDISKP 432 (727)
T ss_pred CCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEecccccCHHHHHHHHHHHHhc-CCCEEEEEEEecCcccc
Confidence 355775 77777775 9999999999999998 9999999998853
Q ss_pred --CCCeEEEeecCCcccccccchh---HHHHHHHHHHHHHHHh
Q psy10366 185 --DGKEHIIEVNDSALSLMGETQE---EDRRFIVDLVIQKMQV 222 (340)
Q Consensus 185 --dG~~~VlEVN~s~~P~~~g~~~---~~~~~IA~~vi~~i~~ 222 (340)
+.++.|+|||.+ |++..+.. ...++++..|++++..
T Consensus 433 ~~~~~~~iiEvN~s--Pgi~~~~~p~~g~~r~v~~~Iid~L~~ 473 (727)
T PRK14016 433 LEEQGGAIVEVNAA--PGLRMHLAPSEGKPRNVGEAIVDMLFP 473 (727)
T ss_pred cccCCcEEEEEcCC--cchhhccCCCCCcchhHHHHHHHHhcc
Confidence 223689999999 99988663 3678899999998764
No 15
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.90 E-value=6.9e-23 Score=221.83 Aligned_cols=203 Identities=18% Similarity=0.230 Sum_probs=159.3
Q ss_pred ChHHHHHHHHhCCCccc--------------------------CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCccccc
Q psy10366 8 DHKNLLLGFNIGGIPSI--------------------------NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDIT 61 (340)
Q Consensus 8 ~~r~vl~~le~~Gvpvi--------------------------Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t 61 (340)
.-..+++.-...|||+. +|+.++.+|.|| ..+.++|+++| ||+++..
T Consensus 160 st~~i~~~a~~rgip~~~l~~~~~~qlg~g~~~~~~~~~~t~~~s~ia~~ia~DK----~~tk~lL~~~G---IpvP~~~ 232 (864)
T TIGR02068 160 STAAIVDEAEKRGIPYMRLSAGSLVQLGYGSRQKRIQATETDRTSAIAVEIACDK----DLTKEILSDAG---VPVPEGT 232 (864)
T ss_pred cHHHHHHHHHHCCCCEEEECCCCEEEecCCCEEEEEEeecCCCCcHHHHHHHcCH----HHHHHHHHHcC---cCCCCEE
Confidence 45678888888888875 588999999999 55666799999 6855433
Q ss_pred ccCCCc-------cc-ccEEEecCCCCcccceEE-ecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCeEEEE
Q psy10366 62 YYPNFK-------EM-YPVVFKIGHAHSGFGKVR-VESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAF 132 (340)
Q Consensus 62 ~~~~~~-------~~-~PvVvKp~~Gs~G~Gv~l-v~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~v~A~ 132 (340)
.+.+.. ++ ||+||||..|++|.||.+ +++.+++.............+++|+||+ |+|+||+|+|++++|.
T Consensus 233 ~~~s~~ea~~~~~~ig~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~~~~~~vlVEefI~-G~e~rvlVv~~~vvaa 311 (864)
T TIGR02068 233 VVQSAEDAWEAAQDLGYPVVIKPYDGNHGRGVTINILTRDEIESAYEAAVEESSGVIVERFIT-GRDHRLLVVGGKVVAV 311 (864)
T ss_pred EECCHHHHHHHHHHcCCCEEEEECCCCCccCEEEEeCCHHHHHHHHHHHHhhCCcEEEEEecc-CCEEEEEEECCEEEEE
Confidence 332221 23 899999999999999998 9999999888776654455678999995 8999999999999765
Q ss_pred E-EEecC--------------------------------------------------------C-----CcccccC-Cce
Q psy10366 133 Q-RKSIS--------------------------------------------------------G-----NWKTNTG-SAM 149 (340)
Q Consensus 133 ~-R~s~~--------------------------------------------------------~-----~WktNvg-ga~ 149 (340)
+ |.+.. | .|++|+. ||.
T Consensus 312 ~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~ 391 (864)
T TIGR02068 312 AERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGV 391 (864)
T ss_pred EEecCCceecCccccHHHHHHHhccCcccCccccCCccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCc
Confidence 4 54321 1 4578885 667
Q ss_pred eeec--CCChHHHHHHHHHHHHhCCCcEEEEeEEEc------CCCCeEEEeecCCcccccccchhH---HHHHHHHHHHH
Q psy10366 150 LEQI--PMTDHYKLWIDEVAELFGGLDICALEIIVG------KDGKEHIIEVNDSALSLMGETQEE---DRRFIVDLVIQ 218 (340)
Q Consensus 150 ~e~~--~~~ee~~~~a~~aa~a~~GldiaGVDll~~------~dG~~~VlEVN~s~~P~~~g~~~~---~~~~IA~~vi~ 218 (340)
..-+ .+.++.+++|.+||+++ ||+|||||++.. ++..+.|||||++ |++..+... ..++++..|++
T Consensus 392 ~~d~td~i~~~~~~~a~~aa~~~-gl~i~gvD~i~~di~~~~~~~~~~iiEvN~~--p~~~~h~~p~~g~~r~v~~~Il~ 468 (864)
T TIGR02068 392 AIDRTDEIHPENAATAVRAAKII-GLDIAGVDIVTEDISRPLRDTDGAIVEVNAA--PGLRMHLAPSQGKPRNVARAIVD 468 (864)
T ss_pred eEecccccCHHHHHHHHHHHHHh-CCCeEEEEEEecCCCCCccccCcEEEEEcCC--cchhhcccccCCCCeeHHHHHHH
Confidence 6666 78899999999999998 999999999863 1223589999998 999988653 37888888888
Q ss_pred HHH
Q psy10366 219 KMQ 221 (340)
Q Consensus 219 ~i~ 221 (340)
++.
T Consensus 469 ~lf 471 (864)
T TIGR02068 469 MLF 471 (864)
T ss_pred Hhc
Confidence 874
No 16
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.90 E-value=1.9e-22 Score=192.25 Aligned_cols=202 Identities=15% Similarity=0.161 Sum_probs=147.3
Q ss_pred HHHHHHhCCCcccCC-hhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc-ccEEEecCCCCcc
Q psy10366 12 LLLGFNIGGIPSINT-LQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM-YPVVFKIGHAHSG 82 (340)
Q Consensus 12 vl~~le~~GvpviNs-~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~PvVvKp~~Gs~G 82 (340)
+-..||..|+|++|+ ..++.+|.|| ..+.++|+++| +|+++...+.... ++ ||+||||..|++|
T Consensus 74 ~~~~le~~gi~~~g~~~~~~~~~~dK----~~~k~~l~~~g---Ip~p~~~~~~~~~~~~~~~~~~~~P~ivKP~~g~~s 146 (304)
T PRK01372 74 IQGLLELLGIPYTGSGVLASALAMDK----LRTKLVWQAAG---LPTPPWIVLTREEDLLAAIDKLGLPLVVKPAREGSS 146 (304)
T ss_pred HHHHHHHcCCCccCCCHHHHHHHhCH----HHHHHHHHHCC---CCCCCEEEEeCcchHHHHHhhcCCCEEEeeCCCCCC
Confidence 556789999999987 7999999999 45555689999 6844433232221 23 8999999999999
Q ss_pred cceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCeEEEEEEEecCC---CcccccC-Cceee--ecCCC
Q psy10366 83 FGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQRKSISG---NWKTNTG-SAMLE--QIPMT 156 (340)
Q Consensus 83 ~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~v~A~~R~s~~~---~WktNvg-ga~~e--~~~~~ 156 (340)
.|+.+++|.+++....+........+++||||+ |++++|.++|+++.+.++....+ +|++|.. ++... +..++
T Consensus 147 ~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~-G~E~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~ 225 (304)
T PRK01372 147 VGVSKVKEEDELQAALELAFKYDDEVLVEKYIK-GRELTVAVLGGKALPVIEIVPAGEFYDYEAKYLAGGTQYICPAGLP 225 (304)
T ss_pred CCEEEeCCHHHHHHHHHHHHhcCCcEEEEcccC-CEEEEEEEECCCccceEEEEecCCEEeeeccccCCCeEEEeCCCCC
Confidence 999999999998887665543445677899998 89999999999976543332223 6888874 33222 22344
Q ss_pred h----HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccc------hhHHHHHHHHHHHHHHHhh
Q psy10366 157 D----HYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGET------QEEDRRFIVDLVIQKMQVS 223 (340)
Q Consensus 157 e----e~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~------~~~~~~~IA~~vi~~i~~~ 223 (340)
+ ++++++.+++++++--+++.||++.+++|++||+|||.. |++.+. .+..+.+.++++..-|+..
T Consensus 226 ~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~~g~~~viEvN~~--p~~~~~~~~~~~~~~~g~~~~~~~~~ii~~a 300 (304)
T PRK01372 226 AEIEAELQELALKAYRALGCRGWGRVDFMLDEDGKPYLLEVNTQ--PGMTSHSLVPMAARAAGISFSELVDRILEDA 300 (304)
T ss_pred HHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEecCC--CCCCcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3 357888889999843379999999999899999999987 887642 1233556666666555543
No 17
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.89 E-value=1.1e-21 Score=187.74 Aligned_cols=183 Identities=16% Similarity=0.217 Sum_probs=134.6
Q ss_pred HHHHHHHHhCCCcccCC-hhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccC-CC------------ccc-ccEEE
Q psy10366 10 KNLLLGFNIGGIPSINT-LQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYP-NF------------KEM-YPVVF 74 (340)
Q Consensus 10 r~vl~~le~~GvpviNs-~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~-~~------------~~~-~PvVv 74 (340)
..+...||..|+|++|+ +.++.+|.|| ..+.++|+++| +|+++..... .. ..+ ||+||
T Consensus 79 ~~~~~~le~~gip~~g~~~~~~~~~~dK----~~~~~~l~~~g---ip~p~~~~~~~~~~~~~~~~~~~~~~~~~~P~vv 151 (315)
T TIGR01205 79 GTIQGLLELMGIPYTGSGVLASALSMDK----LLTKLLWKALG---LPTPDYIVLTQNRASADELECEQVAEPLGFPVIV 151 (315)
T ss_pred cHHHHHHHHcCCCccCCCHHHHHHHHCH----HHHHHHHHHCC---CCCCCEEEEecccccchhhhHHHHHHhcCCCEEE
Confidence 45677899999999996 8999999999 44455689999 6844332221 10 123 99999
Q ss_pred ecCCCCcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEEC-CeEEE-EEEEecCC---CcccccC-C-
Q psy10366 75 KIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIG-SNYKA-FQRKSISG---NWKTNTG-S- 147 (340)
Q Consensus 75 Kp~~Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG-~~v~A-~~R~s~~~---~WktNvg-g- 147 (340)
||..|++|.|+.+++|.+++....+........+++||||+ |++++|.+++ ++... +.+..... +|..+.. +
T Consensus 152 KP~~~~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~-G~e~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (315)
T TIGR01205 152 KPAREGSSVGVSKVKSEEELQAALDEAFEYDEEVLVEQFIK-GRELEVSILGNEEALPIIEIVPEIEGFYDYEAKYLDGS 230 (315)
T ss_pred EeCCCCCccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCCC-CEEEEEEEECCCCccceEEecCCCCCeeCcccccCCCC
Confidence 99999999999999999999988776544455678999996 9999999998 55432 22211111 3444432 2
Q ss_pred -ceeeecCCCh----HHHHHHHHHHHHhCCC-cEEEEeEEEcCCCCeEEEeecCCccccccc
Q psy10366 148 -AMLEQIPMTD----HYKLWIDEVAELFGGL-DICALEIIVGKDGKEHIIEVNDSALSLMGE 203 (340)
Q Consensus 148 -a~~e~~~~~e----e~~~~a~~aa~a~~Gl-diaGVDll~~~dG~~~VlEVN~s~~P~~~g 203 (340)
....+..+++ ++++++.++++++ |+ ++++||++.+++|+++|+|||.. |++..
T Consensus 231 ~~~~~p~~l~~~~~~~i~~~a~~~~~~l-g~~G~~~vD~~~~~~g~~~viEvN~~--pg~~~ 289 (315)
T TIGR01205 231 TEYVIPAPLDEELEEKIKELALKAYKAL-GCRGLARVDFFLDEEGEIYLNEINTI--PGMTA 289 (315)
T ss_pred eeEEeCCCCCHHHHHHHHHHHHHHHHHh-CCCceEEEEEEEeCCCCEEEEEeeCC--CCCCC
Confidence 2222334554 4588999999998 66 89999999998888999999987 88765
No 18
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.87 E-value=3.7e-21 Score=205.42 Aligned_cols=193 Identities=18% Similarity=0.242 Sum_probs=137.7
Q ss_pred HhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc--ccEEEecCCCCcccceEE
Q psy10366 17 NIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM--YPVVFKIGHAHSGFGKVR 87 (340)
Q Consensus 17 e~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~--~PvVvKp~~Gs~G~Gv~l 87 (340)
+..+.+..|++.+..+|+|| ..+.++|+++| ||++....+.... .+ ||+||||..|++|+||.+
T Consensus 470 ~~~~~t~~~s~~s~~~~~DK----~~tk~lL~~~G---IpvP~~~~~~~~e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~ 542 (752)
T PRK02471 470 KNGNMTSKDNYISPLIMENK----VVTKKILAEAG---FPVPAGDEFTSLEEALADYSLFADKAIVVKPKSTNFGLGISI 542 (752)
T ss_pred EeccccCCCHHHHHHHhhCH----HHHHHHHHHCC---cCCCCEEEEcCHHHHHHHHHHhcCCCEEEEECCCCCcCCeEE
Confidence 34567899999999999999 55556699999 6843322222211 12 799999999999999999
Q ss_pred ecChh---hHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCeEEE-EEEEec--CCC---------------------
Q psy10366 88 VESNQ---DFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKA-FQRKSI--SGN--------------------- 140 (340)
Q Consensus 88 v~~~~---~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~v~A-~~R~s~--~~~--------------------- 140 (340)
+++.+ ++.............+++||||+ |+|+||+||||++++ +.|.+. .||
T Consensus 543 ~~~~~~~eel~~A~~~a~~~~~~vlVEEfI~-G~E~Rv~Viggkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~ 621 (752)
T PRK02471 543 FKEPASLEDYEKALEIAFREDSSVLVEEFIV-GTEYRFFVLDGKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTD 621 (752)
T ss_pred ecCcCCHHHHHHHHHHHHhcCCcEEEEeccc-CCEEEEEEECCEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCc
Confidence 76544 44443333223345678999995 999999999999875 545431 111
Q ss_pred --------------------------------------cccccC-Cceeeec--CCChHHHHHHHHHHHHhCCCcEEEEe
Q psy10366 141 --------------------------------------WKTNTG-SAMLEQI--PMTDHYKLWIDEVAELFGGLDICALE 179 (340)
Q Consensus 141 --------------------------------------WktNvg-ga~~e~~--~~~ee~~~~a~~aa~a~~GldiaGVD 179 (340)
|++|+. ||..+-+ .+.+..+++|.+||+++ |++|||||
T Consensus 622 ~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~aa~~i-gl~~~GvD 700 (752)
T PRK02471 622 HRTPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKAAKAL-GAKICGVD 700 (752)
T ss_pred ccccccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHHHHHhc-CCCEEEEE
Confidence 334553 4444443 47788899999999998 99999999
Q ss_pred EEEcC------CC--CeEEEeecCCcccccccchh---HHHHHHHHHHHHHH
Q psy10366 180 IIVGK------DG--KEHIIEVNDSALSLMGETQE---EDRRFIVDLVIQKM 220 (340)
Q Consensus 180 ll~~~------dG--~~~VlEVN~s~~P~~~g~~~---~~~~~IA~~vi~~i 220 (340)
++... .. .+.|||||.+ |++..+.- -..++||+.|++++
T Consensus 701 ii~~di~~p~~~~~~~~~IiEvN~~--P~l~mH~~P~~G~~r~v~~~i~d~l 750 (752)
T PRK02471 701 LIIPDLTQPASPEHPNYGIIELNFN--PAMYMHCFPYKGKGRRITPKILDKL 750 (752)
T ss_pred EEeCCCcccccccCCCeEEEEecCC--CchhhccCccCCCCcchHHHHHHHh
Confidence 99642 11 4689999988 99987753 23677888887765
No 19
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.85 E-value=6.5e-20 Score=175.37 Aligned_cols=183 Identities=16% Similarity=0.128 Sum_probs=130.4
Q ss_pred HHHHHHHHhCCCcccCC-hhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCC---Cccc-ccEEEecCCCCcccc
Q psy10366 10 KNLLLGFNIGGIPSINT-LQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPN---FKEM-YPVVFKIGHAHSGFG 84 (340)
Q Consensus 10 r~vl~~le~~GvpviNs-~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~---~~~~-~PvVvKp~~Gs~G~G 84 (340)
..+-..||.+|+|.+++ +.++.+|.||.++. ++|+ .| +|++++..... ...+ ||+||||..|++|+|
T Consensus 69 ~~~~~~le~~gip~~G~~~~a~~i~~DK~~~k----~~l~-~~---ip~p~~~~~~~~~~~~~l~~P~vvKP~~g~~s~G 140 (299)
T PRK14571 69 GTLQAILDFLGIRYTGSDAFSSMICFDKLLTY----RFLK-GT---VEIPDFVEIKEFMKTSPLGYPCVVKPRREGSSIG 140 (299)
T ss_pred cHHHHHHHHcCCCccCCCHHHHHHHcCHHHHH----HHHh-cC---CCCCCEEEEechhhhhhcCCCEEEecCCCCCcCC
Confidence 34667799999999976 99999999995443 3355 46 67433322211 1234 999999999999999
Q ss_pred eEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCe----EEEEEEEecCC---CcccccCCceee---ecC
Q psy10366 85 KVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSN----YKAFQRKSISG---NWKTNTGSAMLE---QIP 154 (340)
Q Consensus 85 v~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~----v~A~~R~s~~~---~WktNvgga~~e---~~~ 154 (340)
+.+++|.++++............+++||||+ |++++|.|+++. +.++......+ +|.++..++..+ +.+
T Consensus 141 v~~v~~~~el~~~~~~~~~~~~~vlVEeyI~-G~E~sv~vl~~~~~~~vl~~~e~~~~~~~~~~~~k~~~g~~~~~~p~~ 219 (299)
T PRK14571 141 VFICESDEEFQHALKEDLPRYGSVIVQEYIP-GREMTVSILETEKGFEVLPILELRPKRRFYDYVAKYTKGETEFILPAP 219 (299)
T ss_pred EEEECCHHHHHHHHHHHHhhCCcEEEEcccc-ceEEEEEEEcCCCCeeeeceEEEecCCCccccccccCCCCeeEEeCCC
Confidence 9999999998876654322334578999997 899999999652 44444322223 466665322222 345
Q ss_pred CChH----HHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccc
Q psy10366 155 MTDH----YKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGET 204 (340)
Q Consensus 155 ~~ee----~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~ 204 (340)
++++ +++++.+++++++--++++||++.+ +|++||+|||.. |++...
T Consensus 220 l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~-~~~~~viEiN~~--Pg~~~~ 270 (299)
T PRK14571 220 LNPEEERLVKETALKAFVEAGCRGFGRVDGIFS-DGRFYFLEINTV--PGLTEL 270 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEE-CCcEEEEEeeCC--CCCCcc
Confidence 6554 5678888899984358999999987 567999999977 998764
No 20
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.84 E-value=5.8e-20 Score=194.88 Aligned_cols=189 Identities=17% Similarity=0.225 Sum_probs=134.7
Q ss_pred CcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc--ccEEEecCCCCcccceEEecC-
Q psy10366 21 IPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM--YPVVFKIGHAHSGFGKVRVES- 90 (340)
Q Consensus 21 vpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~--~PvVvKp~~Gs~G~Gv~lv~~- 90 (340)
+-...|+-+..+|.|| ..+.++|+++| ||+++...+.... .+ +|+||||..|++|+||.++++
T Consensus 461 ~ts~tS~ia~~i~~DK----~~TK~iL~~aG---IPVP~g~~~~~~~~a~~~~~~~~g~PVVVKP~~g~~G~GVsi~~~~ 533 (737)
T TIGR01435 461 MTSKDNYVSPLIMENK----VVTKKVLAEAG---FRVPFGDEFSSQALALEAFSLFENKAIVVKPKSTNYGLGITIFKNG 533 (737)
T ss_pred ecCCccHHHHHHhcCH----HHHHHHHHHcC---cCCCCEEEECCHHHHHHHHHHhcCCCEEEeeCCCCCcCCeEEecCc
Confidence 4556788899999999 56666799999 6854433232211 12 799999999999999999887
Q ss_pred --hhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCeEEEE-EEEec--CC--------------------------
Q psy10366 91 --NQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAF-QRKSI--SG-------------------------- 139 (340)
Q Consensus 91 --~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~v~A~-~R~s~--~~-------------------------- 139 (340)
.+++...+.........+++|+||+ |+|+||+|||++++|. .|... -|
T Consensus 534 ~~~eel~~Al~~A~~~~~~VLVEefI~-G~EyRv~VIg~kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~p 612 (737)
T TIGR01435 534 FTLEDFQEALNIAFSEDSSVIIEEFLP-GTEYRFFVLNDKVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKP 612 (737)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEeccc-CCEEEEEEECCeEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCC
Confidence 4455444443333345688999996 8999999999998764 34321 01
Q ss_pred --------------------------------CcccccC-Cceeeec--CCChHHHHHHHHHHHHhCCCcEEEEeEEEcC
Q psy10366 140 --------------------------------NWKTNTG-SAMLEQI--PMTDHYKLWIDEVAELFGGLDICALEIIVGK 184 (340)
Q Consensus 140 --------------------------------~WktNvg-ga~~e~~--~~~ee~~~~a~~aa~a~~GldiaGVDll~~~ 184 (340)
.|++|+. ||...-+ .+.++++++|.+||+++ |+++||||++...
T Consensus 613 l~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa~al-gl~i~GVDii~~d 691 (737)
T TIGR01435 613 LEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIATAV-GAAICGVDLIIPD 691 (737)
T ss_pred cccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHHHHhc-CCCEEEEEEEecC
Confidence 1234543 4444333 46678899999999998 9999999999631
Q ss_pred --------CCCeEEEeecCCcccccccchh---HHHHHHHHHHHHHH
Q psy10366 185 --------DGKEHIIEVNDSALSLMGETQE---EDRRFIVDLVIQKM 220 (340)
Q Consensus 185 --------dG~~~VlEVN~s~~P~~~g~~~---~~~~~IA~~vi~~i 220 (340)
...+.|||||.+ |++..+.- -..++|+..|++++
T Consensus 692 i~~p~~~~~~~~~iiEvN~~--P~l~mH~~P~~G~~r~v~~~ild~l 736 (737)
T TIGR01435 692 ETIPDTDKHAIWGVIEANFN--PAMHMHCFPYAGEKRRLTDKVIKFL 736 (737)
T ss_pred CCCCccccccceEEEEEcCC--cchhhhcCCCCCCCcchHHHHHHhh
Confidence 123679999988 99988764 34678888887764
No 21
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.84 E-value=1.2e-19 Score=174.16 Aligned_cols=181 Identities=13% Similarity=0.156 Sum_probs=132.2
Q ss_pred HHHHHHHhCCCcccC-ChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCC----Cccc-ccEEEecCCCCcccc
Q psy10366 11 NLLLGFNIGGIPSIN-TLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPN----FKEM-YPVVFKIGHAHSGFG 84 (340)
Q Consensus 11 ~vl~~le~~GvpviN-s~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~----~~~~-~PvVvKp~~Gs~G~G 84 (340)
.+-..||.+|+|.+. ++.++.+|.|| ..+.++++++| ||+++..+... ...+ ||+||||..|+.|.|
T Consensus 73 ~i~~~le~~gip~~Gs~~~a~~l~~DK----~~~k~~l~~~g---Iptp~~~~~~~~~~~~~~~~~P~vVKP~~ggss~G 145 (296)
T PRK14569 73 RVSALLEMLEIKHTSSSMKSSVITMDK----MISKEILMHHR---MPTPMAKFLTDKLVAEDEISFPVAVKPSSGGSSIA 145 (296)
T ss_pred HHHHHHHHcCCCeeCCCHHHHHHHHCH----HHHHHHHHHCC---CCCCCeEEEchhhhhHhhcCCCEEEEeCCCCCCcC
Confidence 366679999999876 56999999999 44455689999 68433322211 1234 999999999999999
Q ss_pred eEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCeEE-EEEEEecCCCcc---cccCCcee--eecCCC--
Q psy10366 85 KVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYK-AFQRKSISGNWK---TNTGSAML--EQIPMT-- 156 (340)
Q Consensus 85 v~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~v~-A~~R~s~~~~Wk---tNvgga~~--e~~~~~-- 156 (340)
+.+++|.++|..........+ .+++|+||+ |+++.|.|+|+++. .+.... ...|. ....+... .|..++
T Consensus 146 v~~v~~~~eL~~a~~~~~~~~-~~lvEefI~-G~E~tv~vl~~~~~~~~~i~~-~~~~~~~~~k~~~~~~~~~P~~l~~~ 222 (296)
T PRK14569 146 TFKVKSIQELKHAYEEASKYG-EVMIEQWVT-GKEITVAIVNDEVYSSVWIEP-QNEFYDYESKYSGKSIYHSPSGLCEQ 222 (296)
T ss_pred eEEcCCHHHHHHHHHHHHhcC-CEEEEcccc-cEEEEEEEECCcCcceEEEec-CCCcCChhhccCCCcEEEeCCCCCHH
Confidence 999999999988777654333 567899996 89999999998763 333332 23332 22222111 122333
Q ss_pred --hHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCccccccc
Q psy10366 157 --DHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGE 203 (340)
Q Consensus 157 --ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g 203 (340)
+++++++.++.++++.-+++.||++.+++|++||+|||.. |++..
T Consensus 223 ~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~g~~~vlEIN~~--Pg~t~ 269 (296)
T PRK14569 223 KELEVRQLAKKAYDLLGCSGHARVDFIYDDRGNFYIMEINSS--PGMTD 269 (296)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCC--CCCCC
Confidence 4678889999999965689999999998999999999977 98754
No 22
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.82 E-value=1.4e-18 Score=171.87 Aligned_cols=185 Identities=13% Similarity=0.128 Sum_probs=136.0
Q ss_pred HHHHHHHHhCCCcccCCh-hHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCC------C--------ccc-ccEE
Q psy10366 10 KNLLLGFNIGGIPSINTL-QGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPN------F--------KEM-YPVV 73 (340)
Q Consensus 10 r~vl~~le~~GvpviNs~-~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~------~--------~~~-~PvV 73 (340)
-.|-..||.+|||.+++. .++.+|.|| ..+.++++++| +|++|+..+.. . ..+ ||+|
T Consensus 103 g~iqglle~~giPy~Gs~~~asal~~DK----~~tK~~l~~~G---Ipt~p~~~~~~~~~~~~~~~~~~~~~~~lg~Pvi 175 (364)
T PRK14570 103 GAIQGFLKVMDIPCVGAGILGSAISINK----YFCKLLLKSFN---IPLVPFIGFRKYDYFLDKEGIKKDIKEVLGYPVI 175 (364)
T ss_pred CHHHHHHHHcCCCccCCCHHHHHHHHCH----HHHHHHHHHcC---CCCCCEEEEeccccccchHHHHHHHHHhcCCCEE
Confidence 456677999999999999 699999999 45555689999 68656433211 0 123 8999
Q ss_pred EecCCCCcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCeE-EE---EEEEecCC---Cccccc-
Q psy10366 74 FKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNY-KA---FQRKSISG---NWKTNT- 145 (340)
Q Consensus 74 vKp~~Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~v-~A---~~R~s~~~---~WktNv- 145 (340)
|||..+..|.|+.+++|.+++...++....+...+++|+||+ |++++|.|+|+.. .+ ......+. ++.+..
T Consensus 176 VKP~~~GsS~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~-GrEi~v~Vlg~~~~~v~~~~Ei~~~~~~f~dy~~Ky~ 254 (364)
T PRK14570 176 VKPAVLGSSIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE-AREIECSVIGNEQIKIFTPGEIVVQDFIFYDYDAKYS 254 (364)
T ss_pred EEeCCCCCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC-CEEEEEEEECCCCceEeeeEEEEeCCCCccCHHHhcC
Confidence 999999999999999999999988877655555688999998 9999999998842 11 11111122 232322
Q ss_pred ---CCceee--ecCCC----hHHHHHHHHHHHHhCCCcEEEEeEEEcC-CCCeEEEeecCCcccccccc
Q psy10366 146 ---GSAMLE--QIPMT----DHYKLWIDEVAELFGGLDICALEIIVGK-DGKEHIIEVNDSALSLMGET 204 (340)
Q Consensus 146 ---gga~~e--~~~~~----ee~~~~a~~aa~a~~GldiaGVDll~~~-dG~~~VlEVN~s~~P~~~g~ 204 (340)
+..... |..++ ++++++|.++.++++.-+++-||++.++ +|+.||+|||.. ||+..+
T Consensus 255 ~~~~~~~~~~~Pa~l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l~~~~g~~yvlEiNt~--PG~t~~ 321 (364)
T PRK14570 255 TIPGNSIVFNIPAHLDTKHLLDIKEYAFLTYKNLELRGMARIDFLIEKDTGLIYLNEINTI--PGFTDI 321 (364)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEECCCCcEEEEEeeCC--CCCCcc
Confidence 222112 33345 4678899999999966699999999986 488999999966 998664
No 23
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.81 E-value=3.2e-18 Score=166.78 Aligned_cols=202 Identities=12% Similarity=0.169 Sum_probs=143.5
Q ss_pred HHHHHHHhCCCcccCC-hhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCC--C---------ccc-ccEEEecC
Q psy10366 11 NLLLGFNIGGIPSINT-LQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPN--F---------KEM-YPVVFKIG 77 (340)
Q Consensus 11 ~vl~~le~~GvpviNs-~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~--~---------~~~-~PvVvKp~ 77 (340)
.+-..||..|+|.+.+ +.++.+|.|| ..+.++++++| +|+++...... . +.+ ||+||||.
T Consensus 98 ~iq~lle~~gipy~G~~~~a~~l~~DK----~~~k~~l~~~G---Ip~p~~~~~~~~~~~~~~~~~~~~~~~~P~vVKP~ 170 (333)
T PRK01966 98 TIQGLLELLGIPYVGCGVLASALSMDK----ILTKRLLAAAG---IPVAPYVVLTRGDWEEASLAEIEAKLGLPVFVKPA 170 (333)
T ss_pred HHHHHHHHcCCCccCCCHHHHHHHhCH----HHHHHHHHHcC---CCCCCEEEEeccccchhhHHHHHHhcCCCEEEEeC
Confidence 4566789999999865 7899999999 45555689999 68555433321 1 123 89999999
Q ss_pred CCCcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECC--eEEEEEEEecCCCccc---cc--C-Cce
Q psy10366 78 HAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGS--NYKAFQRKSISGNWKT---NT--G-SAM 149 (340)
Q Consensus 78 ~Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~--~v~A~~R~s~~~~Wkt---Nv--g-ga~ 149 (340)
.|+.|.|+.++++.+++...+.........+++|+||+ |++++|.|+|+ ++..........+|-. .. + ...
T Consensus 171 ~~gsS~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~-G~E~~v~vl~~~~~~~~~~ei~~~~~~~d~~~ky~~~~~~~ 249 (333)
T PRK01966 171 NLGSSVGISKVKNEEELAAALDLAFEYDRKVLVEQGIK-GREIECAVLGNDPKASVPGEIVKPDDFYDYEAKYLDGSAEL 249 (333)
T ss_pred CCCCccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC-CEEEEEEEECCCCeEcccEEEecCCceEcHHHccCCCCceE
Confidence 99999999999999999888776555556778999998 89999999985 3322222111223321 22 1 123
Q ss_pred eeecCCCh----HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccc------hhHHHHHHHHHHHHH
Q psy10366 150 LEQIPMTD----HYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGET------QEEDRRFIVDLVIQK 219 (340)
Q Consensus 150 ~e~~~~~e----e~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~------~~~~~~~IA~~vi~~ 219 (340)
..+..+++ ++++++.++.++++--+++.||++.+++|++||+|||.. |++-.. .+..+.+.++++-.-
T Consensus 250 ~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~~g~~~vlEiNt~--Pg~t~~s~~p~~~~~~G~~~~~l~~~i 327 (333)
T PRK01966 250 IIPADLSEELTEKIRELAIKAFKALGCSGLARVDFFLTEDGEIYLNEINTM--PGFTPISMYPKLWEASGLSYPELIDRL 327 (333)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEeeCC--CCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 33444554 457889999999843489999999998999999999976 997653 345566666666544
Q ss_pred HHh
Q psy10366 220 MQV 222 (340)
Q Consensus 220 i~~ 222 (340)
++.
T Consensus 328 i~~ 330 (333)
T PRK01966 328 IEL 330 (333)
T ss_pred HHH
Confidence 443
No 24
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.81 E-value=2.6e-18 Score=168.33 Aligned_cols=182 Identities=14% Similarity=0.191 Sum_probs=132.9
Q ss_pred HHHHHHhCCCcccCC-hhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCC-------------Cccc-ccEEEec
Q psy10366 12 LLLGFNIGGIPSINT-LQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPN-------------FKEM-YPVVFKI 76 (340)
Q Consensus 12 vl~~le~~GvpviNs-~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~-------------~~~~-~PvVvKp 76 (340)
|-..||.+|+|.+++ ..++.+|.|| ..+.++|+++| ||+++...... .+.+ ||+||||
T Consensus 106 iq~~le~~gipy~Gs~~~a~~i~~DK----~~~k~~l~~~G---I~~p~~~~~~~~~~~~~~~~~~~~~~~l~~PvvVKP 178 (347)
T PRK14572 106 IQGFLDTLGIPYTGSGVLASALAMDK----TRANQIFLQSG---QKVAPFFELEKLKYLNSPRKTLLKLESLGFPQFLKP 178 (347)
T ss_pred HHHHHHHcCcCcCCCCHHHHHHHhCH----HHHHHHHHHcC---CCCCCEEEEEccccccChHHHHHHHHhcCCCEEEec
Confidence 556799999999865 7899999999 55555689999 68544322211 1123 8999999
Q ss_pred CCCCcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEEC----Ce--EEE--EEEEecCC---Cccccc
Q psy10366 77 GHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIG----SN--YKA--FQRKSISG---NWKTNT 145 (340)
Q Consensus 77 ~~Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG----~~--v~A--~~R~s~~~---~WktNv 145 (340)
..|+.+.||.+++|.++|....+........+++||||+ |+++.|.|+| ++ +.+ .......+ +|.++.
T Consensus 179 ~~ggsS~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI~-G~E~sv~vi~~~~~g~~~~~~l~~~ei~~~~~~~d~~~ky 257 (347)
T PRK14572 179 VEGGSSVSTYKITNAEQLMTLLALIFESDSKVMSQSFLS-GTEVSCGVLERYRGGKRNPIALPATEIVPGGEFFDFESKY 257 (347)
T ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCcc-cEEEEEEEEeCccCCCCCceecccEEEecCCCccCHHHcc
Confidence 999999999999999999988876554455678999996 8999999996 33 222 11111123 455555
Q ss_pred C-Cc--eeeecCCCh----HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccc
Q psy10366 146 G-SA--MLEQIPMTD----HYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGET 204 (340)
Q Consensus 146 g-ga--~~e~~~~~e----e~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~ 204 (340)
. ++ ...|..+++ +.+++|.+++++++--+++.||++.+ +|++||+|||.. |++...
T Consensus 258 ~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~-~~~~~vlEiNt~--PG~t~~ 320 (347)
T PRK14572 258 KQGGSEEITPARISDQEMKRVQELAIRAHESLGCKGYSRTDFIIV-DGEPHILETNTL--PGMTET 320 (347)
T ss_pred CCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEE-CCcEEEEeeeCC--CCCCcc
Confidence 3 22 223444555 46889999999996567999999997 577999999966 988664
No 25
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.80 E-value=7.8e-18 Score=164.66 Aligned_cols=202 Identities=14% Similarity=0.193 Sum_probs=140.9
Q ss_pred HHHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCC-----ccc-ccEEEecCCCCcc
Q psy10366 10 KNLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF-----KEM-YPVVFKIGHAHSG 82 (340)
Q Consensus 10 r~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~-----~~~-~PvVvKp~~Gs~G 82 (340)
-.+-..||.+|+|.+ ++..++.+|.|| ..+.++++++| ||+++....... ..+ ||+||||..|+.+
T Consensus 106 g~iq~lle~~gipy~G~~~~asai~~DK----~~~k~~l~~~G---Ip~p~~~~~~~~~~~~~~~l~~P~iVKP~~~gsS 178 (343)
T PRK14568 106 GAIQGLLELSGIPYVGCDIQSSALCMDK----SLAYIVAKNAG---IATPAFWTVTADERPDAATLTYPVFVKPARSGSS 178 (343)
T ss_pred hHHHHHHHHcCCCccCCCHHHHHHHhCH----HHHHHHHHHcC---cCcCCEEEEECCchhhhhhcCCCEEEEeCCCCCC
Confidence 345667999999998 678999999999 44445689999 685443322211 124 9999999999999
Q ss_pred cceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCe--E-EE-EEEEecCCC-cc----ccc--C---Cc
Q psy10366 83 FGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSN--Y-KA-FQRKSISGN-WK----TNT--G---SA 148 (340)
Q Consensus 83 ~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~--v-~A-~~R~s~~~~-Wk----tNv--g---ga 148 (340)
+|+.+++|.++|....+....+...+++|+||+ |+++.|.|+|+. . .. ..+...... +. ... + ..
T Consensus 179 ~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~-G~E~sv~vl~~~~~~~~~~~~~i~~~~~~~~~~~k~~~~~g~~~~~ 257 (343)
T PRK14568 179 FGVSKVNSADELDYAIESARQYDSKVLIEEAVV-GSEVGCAVLGNGADLVVGEVDQIRLSHGFFRIHQENEPEKGSENST 257 (343)
T ss_pred CCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcC-CEEEEEEEEcCCCCcceecceEEecCCCccchhhhhccccCCCCee
Confidence 999999999999888776554556678999997 789999999763 2 22 222211222 22 111 1 12
Q ss_pred eeeecCCCh----HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccc------hhHHHHHHHHHHHH
Q psy10366 149 MLEQIPMTD----HYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGET------QEEDRRFIVDLVIQ 218 (340)
Q Consensus 149 ~~e~~~~~e----e~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~------~~~~~~~IA~~vi~ 218 (340)
...|..+++ ++++++.++.++++--+++.||++.+++|++||+|||.. |++-.. .+..+.+..+++-.
T Consensus 258 ~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~~g~~~llEINt~--Pg~t~~S~~p~~~~~~G~~~~~l~~~ 335 (343)
T PRK14568 258 IIVPADISAEERSRVQETAKAIYRALGCRGLARVDMFLQEDGTVVLNEVNTL--PGFTSYSRYPRMMAAAGIPLAELIDR 335 (343)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCEEEEEeeCC--CCCCccCHHHHHHHHcCCCHHHHHHH
Confidence 333445554 467889999999955599999999999999999999966 988653 22345555555544
Q ss_pred HHH
Q psy10366 219 KMQ 221 (340)
Q Consensus 219 ~i~ 221 (340)
-|+
T Consensus 336 li~ 338 (343)
T PRK14568 336 LVS 338 (343)
T ss_pred HHH
Confidence 443
No 26
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=99.78 E-value=1.4e-18 Score=155.85 Aligned_cols=142 Identities=17% Similarity=0.285 Sum_probs=91.5
Q ss_pred ccccccCCCcc----c----ccEEEecCCCCcccceEEecChh-hHHHHHHHHHh-hCceEEeecCCCC--CCcEEEEEE
Q psy10366 58 IDITYYPNFKE----M----YPVVFKIGHAHSGFGKVRVESNQ-DFQDMAGVVAV-ANTYCTTEPYIDS--KFDVHVQKI 125 (340)
Q Consensus 58 ~~~t~~~~~~~----~----~PvVvKp~~Gs~G~Gv~lv~~~~-~l~~i~~~l~~-~~~~~~vQefI~~--g~DIRv~VI 125 (340)
+|.|+...+.+ + .-+|+||+.|.+|+||.+++..+ .+..+.+.+.. ...++++|+||+. .=|.|++++
T Consensus 12 ~P~T~vs~~~~~i~~f~~~~~~~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~i~~GDkRii~~ 91 (173)
T PF02955_consen 12 IPPTLVSRDKEEIRAFIEEHGDIVLKPLDGMGGRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPEIKEGDKRIILF 91 (173)
T ss_dssp S--EEEES-HHHHHHHHHHHSSEEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGGGG-EEEEEEE
T ss_pred CcCEEEECCHHHHHHHHHHCCCEEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEeccccccCCCEEEEEE
Confidence 45666644322 2 34999999999999999998854 57888777653 3467899999994 349999999
Q ss_pred CCeEE-EEEEEecCCCcccccC-CceeeecCCChHHHHHHHHHHHHhC--CCcEEEEeEEEcCCCCeEEEeecCCccccc
Q psy10366 126 GSNYK-AFQRKSISGNWKTNTG-SAMLEQIPMTDHYKLWIDEVAELFG--GLDICALEIIVGKDGKEHIIEVNDSALSLM 201 (340)
Q Consensus 126 G~~v~-A~~R~s~~~~WktNvg-ga~~e~~~~~ee~~~~a~~aa~a~~--GldiaGVDll~~~dG~~~VlEVN~s~~P~~ 201 (340)
+|+.. |+.|....||||+|.. ||..+..+++++..++|.++...+. |+-|+|||+| |. ++.|||-.+..++
T Consensus 92 nG~~~~av~R~P~~gd~R~N~~~Gg~~~~~~lt~~e~~i~~~i~~~L~~~Gl~f~GiDvi----g~-~l~EiNvtsp~g~ 166 (173)
T PF02955_consen 92 NGEPSHAVRRIPAKGDFRSNLAAGGSAEPAELTEREREICEQIGPKLREDGLLFVGIDVI----GD-KLTEINVTSPTGI 166 (173)
T ss_dssp TTEE-SEEEEE--SS-S---GGGTSCEEEEE--HHHHHHHHHHHHHHHHTT--EEEEEEE----TT-EEEEEE-SS---H
T ss_pred CCEEhHHeecCCCCCCceeeeccCCceeecCCCHHHHHHHHHHHHHHhhcCcEEEEEecc----cc-ceEEEeccCchhH
Confidence 99985 7888877899999996 8888999999999999999876543 8999999998 33 7889998754455
Q ss_pred ccc
Q psy10366 202 GET 204 (340)
Q Consensus 202 ~g~ 204 (340)
..+
T Consensus 167 ~~~ 169 (173)
T PF02955_consen 167 REI 169 (173)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 27
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.77 E-value=2e-17 Score=164.12 Aligned_cols=205 Identities=15% Similarity=0.161 Sum_probs=140.6
Q ss_pred HHHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc-ccEEEecCCCC
Q psy10366 10 KNLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM-YPVVFKIGHAH 80 (340)
Q Consensus 10 r~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~PvVvKp~~Gs 80 (340)
..+...|+..|+|++ .+.+++.+|.|| ..+.++|+++| ||.++...+.... ++ ||+||||..|+
T Consensus 41 ~~~~d~l~~~Gi~~~g~s~~a~~l~~dK----~~~k~~l~~~g---Iptp~~~~~~~~~ea~~~~~~~g~PvVvKp~~~~ 113 (379)
T PRK13790 41 DGLADILRANGFKVFGPNKQAAQIEGSK----LFAKKIMEKYN---IPTADYKEVERKKDALTYIENCELPVVVKKDGLA 113 (379)
T ss_pred HHHHHHHHhCCCcEECCCHHHHHHhCCH----HHHHHHHHHCC---CCCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCC
Confidence 456778999999988 566999999999 44445589999 6854432222111 23 99999999999
Q ss_pred cccceEEecChhhHHHHHHHHHh--hCceEEeecCCC-CCCcEEEEEECCeEE---EEEE---EecCCCcccccCC-cee
Q psy10366 81 SGFGKVRVESNQDFQDMAGVVAV--ANTYCTTEPYID-SKFDVHVQKIGSNYK---AFQR---KSISGNWKTNTGS-AML 150 (340)
Q Consensus 81 ~G~Gv~lv~~~~~l~~i~~~l~~--~~~~~~vQefI~-~g~DIRv~VIG~~v~---A~~R---~s~~~~WktNvgg-a~~ 150 (340)
+|+|+.+++|.++++.....+.. ....+++||||+ ..+.+.+++.|+.++ +..+ +.-.++|+.|+++ +..
T Consensus 114 ~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~i~G~E~sv~~~~~g~~~~~~~~~~~~~kr~~~~d~g~~tgg~~~~ 193 (379)
T PRK13790 114 AGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLEGEEFSLMTFVNGDLAVPFDCIAQDHKRAFDHDEGPNTGGMGAY 193 (379)
T ss_pred CCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEcccCceEEEEEEeeCCEEEecccccccccccccCCCCCcCCCCceE
Confidence 99999999999998887765431 123578999999 578888888777543 2222 1236789999864 333
Q ss_pred eec-CCChHH-----HHHHHHHHHHh--CCCcEEEE---eEEEcCCCCeEEEeecCC-cccccccchhHHHHHHHHHHHH
Q psy10366 151 EQI-PMTDHY-----KLWIDEVAELF--GGLDICAL---EIIVGKDGKEHIIEVNDS-ALSLMGETQEEDRRFIVDLVIQ 218 (340)
Q Consensus 151 e~~-~~~ee~-----~~~a~~aa~a~--~GldiaGV---Dll~~~dG~~~VlEVN~s-~~P~~~g~~~~~~~~IA~~vi~ 218 (340)
.+. .++++. ++++.++.+++ .|++|.|| |++.+++| ++|+|+|.. .=|.++-+....+.|+++.+++
T Consensus 194 ~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~~g-~~viEiN~R~G~pe~~~~~~~~~~Dl~~~~~~ 272 (379)
T PRK13790 194 CPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDG-PKVIEFNARFGDPEAQVLLSRMESDLMQHIID 272 (379)
T ss_pred eeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-eEEEEEEcccCCCcceeeecccCCCHHHHHHH
Confidence 333 345543 56667776665 26677774 99998887 799999964 0022222223345788887777
Q ss_pred HHHh
Q psy10366 219 KMQV 222 (340)
Q Consensus 219 ~i~~ 222 (340)
....
T Consensus 273 ~~~g 276 (379)
T PRK13790 273 LDEG 276 (379)
T ss_pred HHcC
Confidence 6653
No 28
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.75 E-value=2.9e-17 Score=160.47 Aligned_cols=182 Identities=17% Similarity=0.231 Sum_probs=128.6
Q ss_pred HHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc-ccEEEecCCC-Cc
Q psy10366 11 NLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM-YPVVFKIGHA-HS 81 (340)
Q Consensus 11 ~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~PvVvKp~~G-s~ 81 (340)
.++..|+..|++++++++++.+|+|| ..+.++|+++| +|.+++....+.. .+ ||+|+||..| ++
T Consensus 74 ~~l~~l~~~g~~~~p~~~~~~~~~dK----~~~k~~l~~~g---ip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~~g~~ 146 (352)
T TIGR01161 74 EALEKLEARGVKLFPSPDALAIIQDR----LTQKQFLQKLG---LPVPPFLVIKDEEELDAALQELGFPVVLKARTGGYD 146 (352)
T ss_pred HHHHHHHhCCCeECCCHHHHHHhcCH----HHHHHHHHHcC---CCCCCccEeCCHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 45788999999999999999999999 44455688999 6854433332221 23 8999999987 48
Q ss_pred ccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEE---CCeEEEEEEEecCCCcccccCCceeeecCCC--
Q psy10366 82 GFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKI---GSNYKAFQRKSISGNWKTNTGSAMLEQIPMT-- 156 (340)
Q Consensus 82 G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VI---G~~v~A~~R~s~~~~WktNvgga~~e~~~~~-- 156 (340)
|+|+.++++.++++...+.+. ...+++||||+.++.+.|.++ +|++..+-.. ...++.+.......+..++
T Consensus 147 g~Gv~~v~~~~el~~a~~~~~--~~~~lvEe~I~~~~E~sv~~~~~~~G~~~~~~~~--~~~~~~g~~~~~~~p~~~~~~ 222 (352)
T TIGR01161 147 GRGQYRIRNEADLPQAAKELG--DRECIVEEFVPFERELSVIVARSADGETAFYPVV--ENIHQDGILRYVVAPAAVPDA 222 (352)
T ss_pred CCCEEEECCHHHHHHHHHhcC--CCcEEEEecCCCCeEEEEEEEEcCCCCEEEECCc--ccEEeCCEEEEEECCCCCCHH
Confidence 999999999999887666542 235678999998899999886 4555432211 1112222221122233343
Q ss_pred --hHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccch
Q psy10366 157 --DHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQ 205 (340)
Q Consensus 157 --ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~ 205 (340)
++.++++.+++++++..++++||++.+++|++||+|||.. |+=.|+.
T Consensus 223 ~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~dg~~~v~EinpR--~~~sg~~ 271 (352)
T TIGR01161 223 IQARAEEIARRLMEELGYVGVLAVEMFVLPDGRLLINELAPR--VHNSGHY 271 (352)
T ss_pred HHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEecCC--CCCcCcC
Confidence 4567888889999854579999999999998999999966 5544443
No 29
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.74 E-value=9.9e-17 Score=153.95 Aligned_cols=189 Identities=16% Similarity=0.216 Sum_probs=134.0
Q ss_pred HHHHhCCCc-ccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCC----------ccc-ccEEEecCCCCc
Q psy10366 14 LGFNIGGIP-SINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF----------KEM-YPVVFKIGHAHS 81 (340)
Q Consensus 14 ~~le~~Gvp-viNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~----------~~~-~PvVvKp~~Gs~ 81 (340)
..|+..|++ +.|+++++..|.|| ..+.++++++| +| +|.++.... ..+ ||+|+||..|++
T Consensus 89 ~~l~~~g~~~~~~~~~~~~~~~dK----~~~~~~l~~~g---ip-~p~~~~~~~~~~~~~~~~~~~~~~P~viKP~~g~~ 160 (326)
T PRK12767 89 DRFEEIGVKVLVSSKEVIEICNDK----WLTYEFLKENG---IP-TPKSYLPESLEDFKAALAKGELQFPLFVKPRDGSA 160 (326)
T ss_pred HHHHHcCcEEEeCCHHHHHHHhcH----HHHHHHHHHcC---CC-CCCEEcccCHHHHHhhhhcccCCCCEEEEeCCCCC
Confidence 447778886 57999999999999 55556689999 68 455554221 123 999999999999
Q ss_pred ccceEEecChhhHHHHHHHHHhhCceEEeecCCC-CCCcEEEEEE-CCeEEE-EEEEecCCCcccccCCceeeecCCChH
Q psy10366 82 GFGKVRVESNQDFQDMAGVVAVANTYCTTEPYID-SKFDVHVQKI-GSNYKA-FQRKSISGNWKTNTGSAMLEQIPMTDH 158 (340)
Q Consensus 82 G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~-~g~DIRv~VI-G~~v~A-~~R~s~~~~WktNvgga~~e~~~~~ee 158 (340)
|+|+.+++|.+++....... ..+++||||+ ..+++.+++. +|++++ +.++.. ..+. +..........++
T Consensus 161 s~gv~~v~~~~el~~~~~~~----~~~lvqeyi~G~e~~v~~~~~~~G~~~~~~~~~~~--~~~~--g~~~~~~~~~~~~ 232 (326)
T PRK12767 161 SIGVFKVNDKEELEFLLEYV----PNLIIQEFIEGQEYTVDVLCDLNGEVISIVPRKRI--EVRA--GETSKGVTVKDPE 232 (326)
T ss_pred ccCeEEeCCHHHHHHHHHhC----CCeEEEeccCCceEEEEEEEcCCCCEEEEEEeeee--eecC--CceeEEEEcCCHH
Confidence 99999999999887765532 2567899996 3456666665 777754 333211 1111 1111111234688
Q ss_pred HHHHHHHHHHHhCCC-cEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHHH
Q psy10366 159 YKLWIDEVAELFGGL-DICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 159 ~~~~a~~aa~a~~Gl-diaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i~ 221 (340)
+++++.++++++ |+ ++++||++.++ |+++|+|+|.. +++.-.+...++.|++++++..+.
T Consensus 233 i~~~~~~i~~~l-g~~G~~~vd~~~~~-g~~~viEiNpR-~~g~~~~~~~~G~n~~~~~~~~~~ 293 (326)
T PRK12767 233 LFKLAERLAEAL-GARGPLNIQCFVTD-GEPYLFEINPR-FGGGYPLSYMAGANEPDWIIRNLL 293 (326)
T ss_pred HHHHHHHHHHhc-CCeeeEEEEEEEEC-CeEEEEEEeCC-CCCcchhhHhhCCCHHHHHHHHHc
Confidence 999999999998 66 69999999986 67999999964 233333556789999999998775
No 30
>PRK05586 biotin carboxylase; Validated
Probab=99.74 E-value=1.7e-16 Score=160.24 Aligned_cols=201 Identities=16% Similarity=0.142 Sum_probs=139.5
Q ss_pred HHHHHHHHhCCCc-ccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCccccccc--CCCc-------cc-ccEEEecCC
Q psy10366 10 KNLLLGFNIGGIP-SINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYY--PNFK-------EM-YPVVFKIGH 78 (340)
Q Consensus 10 r~vl~~le~~Gvp-viNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~--~~~~-------~~-~PvVvKp~~ 78 (340)
..+...++..|++ +..+++++.+|+|| ..+.++++++| +|++|.++. .+.. ++ ||+||||..
T Consensus 89 ~~~a~~~~~~gi~~~g~s~~~~~~~~DK----~~~k~~l~~~G---Ipvp~~~~~~~~~~~e~~~~~~~igyPvvvKP~~ 161 (447)
T PRK05586 89 SKFAKMCKECNIVFIGPDSETIELMGNK----SNAREIMIKAG---VPVVPGSEGEIENEEEALEIAKEIGYPVMVKASA 161 (447)
T ss_pred HHHHHHHHHCCCcEECcCHHHHHhhCCH----HHHHHHHHHCC---CCCCCCcccccCCHHHHHHHHHHcCCCEEEEECC
Confidence 4666778899997 66999999999999 45555689999 685554322 2211 23 999999999
Q ss_pred CCcccceEEecChhhHHHHHHHHHh------hCceEEeecCCCCCCcEEEEEECC---eEEEEEEEecCCCcccccCCce
Q psy10366 79 AHSGFGKVRVESNQDFQDMAGVVAV------ANTYCTTEPYIDSKFDVHVQKIGS---NYKAFQRKSISGNWKTNTGSAM 149 (340)
Q Consensus 79 Gs~G~Gv~lv~~~~~l~~i~~~l~~------~~~~~~vQefI~~g~DIRv~VIG~---~v~A~~R~s~~~~WktNvgga~ 149 (340)
|++|+|+.+++|.+++....+.... ....+++|+||+..+.+.+.|+++ +++.+..+. ...++.|...-.
T Consensus 162 gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~ei~v~v~~d~~G~~~~~~~~~-~~~~~~~~~~~~ 240 (447)
T PRK05586 162 GGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQILGDNYGNVVHLGERD-CSLQRRNQKVLE 240 (447)
T ss_pred CCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeEEEEEEEECCCCCEEEEecee-cceEecccceEE
Confidence 9999999999999998776653211 123467899999778899988864 455443221 112333321111
Q ss_pred eeec-CCCh----HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCccccccc--chhHHHHHHHHHHHHHH
Q psy10366 150 LEQI-PMTD----HYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGE--TQEEDRRFIVDLVIQKM 220 (340)
Q Consensus 150 ~e~~-~~~e----e~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g--~~~~~~~~IA~~vi~~i 220 (340)
..+. .+++ ++++++.+++++++--+.+.||++.+++|++||+|||.- ++-++ .+..++.++.+..+...
T Consensus 241 ~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~~g~~~~iEvNpR--~~~~~~~t~~~tGid~~~~~i~~a 316 (447)
T PRK05586 241 EAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKDGNFYFMEMNTR--IQVEHPITEMITGVDLVKEQIKIA 316 (447)
T ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcCCCCEEEEEEECC--CCCCccceehhhCCCHHHHHHHHH
Confidence 1111 2344 567888899999865566679999999999999999966 54332 34578888888877654
No 31
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.73 E-value=1.1e-16 Score=157.12 Aligned_cols=193 Identities=16% Similarity=0.251 Sum_probs=131.8
Q ss_pred HHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHH-HHHcCCCCCCcccccccCCCc-------cc-ccEEEecCCCCc
Q psy10366 11 NLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQL-QRKLGKENFPLIDITYYPNFK-------EM-YPVVFKIGHAHS 81 (340)
Q Consensus 11 ~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~l-l~~~G~~~~P~~~~t~~~~~~-------~~-~PvVvKp~~Gs~ 81 (340)
..+..|+..|+|++++++++.+|.||.. +.++ ++++| +|++++....... ++ ||+|+||..|++
T Consensus 76 ~~~~~l~~~g~~~~~~~~~~~~~~dK~~----~~~~~~~~~g---ip~p~~~~~~~~~~~~~~~~~~g~P~VvKP~~g~~ 148 (380)
T TIGR01142 76 DALFELEKEGYFVVPNARATKLTMNREG----IRRLAAEELG---LPTSRYMFADSLDELREAVEKIGYPCVVKPVMSSS 148 (380)
T ss_pred HHHHHHHhcCCeeCCCHHHHHHhhCHHH----HHHHHHHHCC---CCCCCceEeCCHHHHHHHHHHcCCCEEEEECCCcC
Confidence 4566789999999999999999999943 3333 47899 6844433332211 23 999999999999
Q ss_pred ccceEEecChhhHHHHHHHHHhh----CceEEeecCCCCCCcEEEEEE---CCeEEEE---EEEecCCCcccccCCceee
Q psy10366 82 GFGKVRVESNQDFQDMAGVVAVA----NTYCTTEPYIDSKFDVHVQKI---GSNYKAF---QRKSISGNWKTNTGSAMLE 151 (340)
Q Consensus 82 G~Gv~lv~~~~~l~~i~~~l~~~----~~~~~vQefI~~g~DIRv~VI---G~~v~A~---~R~s~~~~WktNvgga~~e 151 (340)
|+|+.+++|.++++...+.+... ...+++||||+.++.+.|.++ +|++... ......+++.. ...
T Consensus 149 s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~~~~E~sv~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~ 223 (380)
T TIGR01142 149 GKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFIDFDYEITLLTVRHVDGNTTFCAPIGHRQIDGDYHE-----SWQ 223 (380)
T ss_pred CCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecCCCEEEEEEEEEcCCCCEEEecCcceEEeCCeeEE-----EEC
Confidence 99999999999988877765321 235678999997788988877 5554321 11111222222 123
Q ss_pred ecCCChH----HHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchh--HHHHHHHHHHHH
Q psy10366 152 QIPMTDH----YKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQE--EDRRFIVDLVIQ 218 (340)
Q Consensus 152 ~~~~~ee----~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~--~~~~~IA~~vi~ 218 (340)
|..++++ .++++.+++++++..+++.||++.+++ ++||+|||.. |+-.++.. ..+.+..+..++
T Consensus 224 p~~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~-~~~viEinpR--~~~~~~~~~~~~g~~~~~~~~r 293 (380)
T TIGR01142 224 PQEMSEKALEEAQRIAKRITDALGGYGLFGVELFVKGD-EVIFSEVSPR--PHDTGMVTLISQGLSEFALHVR 293 (380)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECC-cEEEEEeecC--CCCCceEEeeecCCCHHHHHHH
Confidence 3445544 467888888998777999999999866 5899999976 66544432 124444444443
No 32
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.71 E-value=1.7e-16 Score=138.57 Aligned_cols=156 Identities=19% Similarity=0.276 Sum_probs=101.8
Q ss_pred HcCCchHHHHHHHHHHHHcCCCCCCcccccccCCC-cc-------c-ccEEEecCCCCcccceEEecChhhHHHHHHHHH
Q psy10366 32 NFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF-KE-------M-YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVA 102 (340)
Q Consensus 32 ~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~-~~-------~-~PvVvKp~~Gs~G~Gv~lv~~~~~l~~i~~~l~ 102 (340)
+|.|| ..+.++++++| +| +|.++.... .+ + +|+||||..|++|.|+.+++|.+++......+.
T Consensus 1 ~~~dK----~~~~~~~~~~g---v~-~P~~~~~~~~~~~~~~~~~~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~ 72 (184)
T PF13535_consen 1 RCNDK----YRMRELLKKAG---VP-VPKTRIVDSEEELRAFAEDLGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIR 72 (184)
T ss_dssp -TCCH----HHHHHHHHHHT---S-----EEEECSHHHHHHHHHHSSSSEEEEESS-STTTT-EEESSHHHHHHHHHHHH
T ss_pred CCCCH----HHHHHHHHHcC---cC-CCCEEEECCHHHHHHHHHHcCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHH
Confidence 58999 44445588899 67 444443222 21 2 899999999999999999999999999877765
Q ss_pred hh----CceEEeecCCC-CCCcEEEEEECCeEEE--EEEEec--CCCcccccCCceeee--cCCChHHHHHHHHHHHHhC
Q psy10366 103 VA----NTYCTTEPYID-SKFDVHVQKIGSNYKA--FQRKSI--SGNWKTNTGSAMLEQ--IPMTDHYKLWIDEVAELFG 171 (340)
Q Consensus 103 ~~----~~~~~vQefI~-~g~DIRv~VIG~~v~A--~~R~s~--~~~WktNvgga~~e~--~~~~ee~~~~a~~aa~a~~ 171 (340)
.. ...+++||||+ ..+.+++++.+|++.+ +.++.. ..++..+...+.... .+..+++++++.++.+++
T Consensus 73 ~~~~~~~~~~ivqe~i~g~e~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 151 (184)
T PF13535_consen 73 EDSPLGNGPVIVQEYIPGDEYSVDGVVDDGEVVFAGISRYVRQSPGHFSGGVPTGYSVPSEPPLPEELRDLARKLLRAL- 151 (184)
T ss_dssp HHHS-HSSSEEEEE---SEEEEEEEEEETTEEEEEEEEEEEEEETCCCSSSEEEEEEES--CEHHHHHHHHHHHHHHHH-
T ss_pred HhcccCCccEEEEEeeeeeeEEEEEEEEcceEEEEEEEEEecccccccccceeeeeecccccccHHHHHHHHHHHHHHc-
Confidence 43 24567899999 4789999999999742 333211 222211111111111 122378889999999988
Q ss_pred CC--cEEEEeEEEcCCCCeEEEeecCC
Q psy10366 172 GL--DICALEIIVGKDGKEHIIEVNDS 196 (340)
Q Consensus 172 Gl--diaGVDll~~~dG~~~VlEVN~s 196 (340)
|. .+++||++.+++|+++++|||.-
T Consensus 152 g~~~G~~~id~~~~~~g~~~~iEiN~R 178 (184)
T PF13535_consen 152 GYRNGFFHIDFIVDPDGELYFIEINPR 178 (184)
T ss_dssp T--SEEEEEEEEEETCCEEEEEEEESS
T ss_pred CCceEEEEEEEEEeCCCCEEEEEECcc
Confidence 76 99999999999998999999964
No 33
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=99.70 E-value=1.1e-15 Score=155.98 Aligned_cols=198 Identities=19% Similarity=0.214 Sum_probs=137.5
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCC---Cc-------cc-ccEEEecCC
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPN---FK-------EM-YPVVFKIGH 78 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~---~~-------~~-~PvVvKp~~ 78 (340)
.+...++..|++++ ++++++..|+|| ..+.++++++| +|++|.+.... .. ++ ||+||||..
T Consensus 89 ~~a~~~e~~Gi~~iGps~~~i~~~~DK----~~~k~~l~~~g---Ipvpp~~~~~~~~~~~~~~~~~~~igyPvvvKP~~ 161 (478)
T PRK08463 89 EFAKAVEDAGIIFIGPKSEVIRKMGNK----NIARYLMKKNG---IPIVPGTEKLNSESMEEIKIFARKIGYPVILKASG 161 (478)
T ss_pred HHHHHHHHCCCceecCCHHHHHhhCcH----HHHHHHHHHcC---CCCCCCccccCCCCHHHHHHHHHHhCCCEEEEeCC
Confidence 46788999999986 789999999999 44455688999 68656444321 11 22 999999999
Q ss_pred CCcccceEEecChhhHHHHHHHHH------hhCceEEeecCCCCCCcEEEEEECCe---EEEEE-EE-ec-CCCcccccC
Q psy10366 79 AHSGFGKVRVESNQDFQDMAGVVA------VANTYCTTEPYIDSKFDVHVQKIGSN---YKAFQ-RK-SI-SGNWKTNTG 146 (340)
Q Consensus 79 Gs~G~Gv~lv~~~~~l~~i~~~l~------~~~~~~~vQefI~~g~DIRv~VIG~~---v~A~~-R~-s~-~~~WktNvg 146 (340)
|++|+|+.++++.++++...+... .....+++|+||+.++.+-+.|+++. ++... |. +. ..+++.
T Consensus 162 ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~iev~v~~d~~g~v~~~~er~~s~~~~~~~~--- 238 (478)
T PRK08463 162 GGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQKV--- 238 (478)
T ss_pred CCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeEEEEEEEEcCCCCEEEEeccCCccccccCce---
Confidence 999999999999999888765421 12345778999998888999888653 44432 31 10 012221
Q ss_pred Cceeeec-CCChHH----HHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCccccccc--chhHHHHHHHHHHHHH
Q psy10366 147 SAMLEQI-PMTDHY----KLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGE--TQEEDRRFIVDLVIQK 219 (340)
Q Consensus 147 ga~~e~~-~~~ee~----~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g--~~~~~~~~IA~~vi~~ 219 (340)
-...+. .++++. ++++.+++++++--+++-||++.+++|++||+|||.. ++-+. .+..++.|+.+..+..
T Consensus 239 -ie~~P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~~~~~y~iEiN~R--~~~~~~~te~~tGidlv~~~ir~ 315 (478)
T PRK08463 239 -IEIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNRFYFMEMNTR--IQVEHGVTEEITGIDLIVRQIRI 315 (478)
T ss_pred -EEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEECC--cCCCcceeeHhhCCCHHHHHHHH
Confidence 111122 245544 4578888888843344559999998889999999965 44332 3457899998888765
Q ss_pred HH
Q psy10366 220 MQ 221 (340)
Q Consensus 220 i~ 221 (340)
..
T Consensus 316 a~ 317 (478)
T PRK08463 316 AA 317 (478)
T ss_pred Hc
Confidence 53
No 34
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=99.70 E-value=7.7e-16 Score=156.82 Aligned_cols=200 Identities=20% Similarity=0.181 Sum_probs=137.1
Q ss_pred HHHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCccccccc--CCCc-------cc-ccEEEecCC
Q psy10366 10 KNLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYY--PNFK-------EM-YPVVFKIGH 78 (340)
Q Consensus 10 r~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~--~~~~-------~~-~PvVvKp~~ 78 (340)
..+...+|..|++++ ++++++..|+|| ..+.++++++| +|++|.+.. .+.+ ++ ||+||||..
T Consensus 88 ~~~a~~~e~~Gi~~igps~~~i~~~~DK----~~~r~~l~~~G---Ip~pp~~~~~~~~~~e~~~~~~~igyPvvvKp~~ 160 (472)
T PRK07178 88 AELAEICAERGIKFIGPSAEVIRRMGDK----TEARRAMIKAG---VPVTPGSEGNLADLDEALAEAERIGYPVMLKATS 160 (472)
T ss_pred HHHHHHHHHcCCCccCCCHHHHHHhcCH----HHHHHHHHHCC---CCCCCCcCcCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 457788999999965 789999999999 55555689999 686565432 1111 23 999999999
Q ss_pred CCcccceEEecChhhHHHHHHHHHh------hCceEEeecCCCCCCcEEEEEECC---eEEE-EEEEecCCCcccccCCc
Q psy10366 79 AHSGFGKVRVESNQDFQDMAGVVAV------ANTYCTTEPYIDSKFDVHVQKIGS---NYKA-FQRKSISGNWKTNTGSA 148 (340)
Q Consensus 79 Gs~G~Gv~lv~~~~~l~~i~~~l~~------~~~~~~vQefI~~g~DIRv~VIG~---~v~A-~~R~s~~~~WktNvgga 148 (340)
|++|+|+.+++|.+++....+.... ....+++|+||+.++.+.|.|+++ +++. +-|. ..-++.|....
T Consensus 161 ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~eiev~v~~d~~G~~v~~~er~--~s~~~~~~~~~ 238 (472)
T PRK07178 161 GGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILADSHGNVVHLFERD--CSIQRRNQKLI 238 (472)
T ss_pred CCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeEEEEEEEEECCCCEEEEEccc--cceEecCcceE
Confidence 9999999999999998876654211 123467899999888999988864 3544 3332 12233232111
Q ss_pred eeeec-CCChH----HHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCccccccc--chhHHHHHHHHHHHHHH
Q psy10366 149 MLEQI-PMTDH----YKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGE--TQEEDRRFIVDLVIQKM 220 (340)
Q Consensus 149 ~~e~~-~~~ee----~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g--~~~~~~~~IA~~vi~~i 220 (340)
...+. .++++ +++++.+++++++--+.+.||++.+++|++||+|||.. +.-+. .+..++.|+++..+...
T Consensus 239 e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~g~~y~iEiNpR--l~~~~~~te~~tGvdl~~~~ir~a 315 (472)
T PRK07178 239 EIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDADGEVYFMEMNTR--VQVEHTITEEITGIDIVREQIRIA 315 (472)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeCCCCEEEEEEeCC--cCCCccceeeeeCcCHHHHHHHHH
Confidence 11111 34444 45688888998843355669999988889999999965 33322 23467889888776544
No 35
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.69 E-value=9.7e-16 Score=159.94 Aligned_cols=184 Identities=14% Similarity=0.129 Sum_probs=131.0
Q ss_pred HHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc-ccEEEecCCCC-c
Q psy10366 11 NLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM-YPVVFKIGHAH-S 81 (340)
Q Consensus 11 ~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~PvVvKp~~Gs-~ 81 (340)
..+..|+..|+|+.++++++.+|+|| ..+-++|+++| ||++++....... ++ ||+||||..|+ +
T Consensus 97 ~~l~~le~~gi~v~ps~~al~i~~DK----~~~K~~l~~~G---Iptp~~~~v~~~~el~~~~~~ig~P~VvKP~~ggs~ 169 (577)
T PLN02948 97 DTLEALEKQGVDVQPKSSTIRIIQDK----YAQKVHFSKHG---IPLPEFMEIDDLESAEKAGDLFGYPLMLKSRRLAYD 169 (577)
T ss_pred HHHHHHHhcCCccCCCHHHHHHhcCH----HHHHHHHHHCC---cCCCCeEEeCCHHHHHHHHHhcCCcEEEEeCCCCCC
Confidence 45688999999999999999999999 34444588999 6855543332221 23 89999998765 7
Q ss_pred ccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEEC---CeEEEEEEEecCCCcccccCCceeeecCCCh-
Q psy10366 82 GFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIG---SNYKAFQRKSISGNWKTNTGSAMLEQIPMTD- 157 (340)
Q Consensus 82 G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG---~~v~A~~R~s~~~~WktNvgga~~e~~~~~e- 157 (340)
|+|+.+++|.++++.....+..+...+++|+||+..+.+-|.+++ |++..+-.. ...-+.++..-...|..+++
T Consensus 170 g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~~~~EisV~v~r~~~G~i~~~p~~--E~~~~~~~~~~~~~Pa~l~~~ 247 (577)
T PLN02948 170 GRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAPFVKELAVMVARSRDGSTRCYPVV--ETIHKDNICHVVEAPANVPWK 247 (577)
T ss_pred CCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCCCCeEEEEEEEECCCCCEEEecCc--ccEEECCeeEEEEECCCCCHH
Confidence 999999999999888777654333456789999887899999883 455432110 00000011111123344454
Q ss_pred ---HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccch
Q psy10366 158 ---HYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQ 205 (340)
Q Consensus 158 ---e~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~ 205 (340)
+.+++|.++.+++++.+++.||++.+++|++||+|||.. |+..|+.
T Consensus 248 ~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~dG~v~v~EInpR--pg~sGh~ 296 (577)
T PLN02948 248 VAKLATDVAEKAVGSLEGAGVFGVELFLLKDGQILLNEVAPR--PHNSGHY 296 (577)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEEEEcCCCcEEEEEEeCC--CCCCCce
Confidence 567778888889888889999999999999999999966 8876643
No 36
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=99.68 E-value=1.6e-15 Score=153.07 Aligned_cols=201 Identities=16% Similarity=0.161 Sum_probs=136.7
Q ss_pred HHHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccc-cC-CCc-------cc-ccEEEecCC
Q psy10366 10 KNLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITY-YP-NFK-------EM-YPVVFKIGH 78 (340)
Q Consensus 10 r~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~-~~-~~~-------~~-~PvVvKp~~ 78 (340)
..+...+|..|++++ ++++++.+|+|| ..+.++++++| +|++|.++ .. +.. ++ ||+||||..
T Consensus 89 ~~~a~~~e~~Gi~~~g~~~~~~~~~~DK----~~~r~~l~~~g---ip~pp~~~~~~~~~~e~~~~~~~ig~PvvvKP~~ 161 (449)
T TIGR00514 89 ANFAEQCERSGFTFIGPSAESIRLMGDK----VSAIETMKKAG---VPCVPGSDGLVEDEEENVRIAKRIGYPVIIKATA 161 (449)
T ss_pred HHHHHHHHHCCCcEECcCHHHHHHhCCH----HHHHHHHHHCC---CCCCCCcccCcCCHHHHHHHHHHhCCCEEEEeCC
Confidence 346678999999864 899999999999 55566789999 68555432 11 211 23 999999999
Q ss_pred CCcccceEEecChhhHHHHHHHHHh------hCceEEeecCCCCCCcEEEEEECC---eEEEEEEEec-----CCCcccc
Q psy10366 79 AHSGFGKVRVESNQDFQDMAGVVAV------ANTYCTTEPYIDSKFDVHVQKIGS---NYKAFQRKSI-----SGNWKTN 144 (340)
Q Consensus 79 Gs~G~Gv~lv~~~~~l~~i~~~l~~------~~~~~~vQefI~~g~DIRv~VIG~---~v~A~~R~s~-----~~~WktN 144 (340)
|++|+|+.+++|.+++....+.... ....+++|+||+.++.+-+.++++ ++..+..+.. ...+..+
T Consensus 162 g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 241 (449)
T TIGR00514 162 GGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADKYGNAIYLGERDCSIQRRHQKLLEE 241 (449)
T ss_pred CCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeEEEEEEEEcCCCCEEEEeccccCceecccceEEE
Confidence 9999999999999998887764321 123467899998778888888763 4443321100 0111111
Q ss_pred cCCceeeecCCChHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccc--cchhHHHHHHHHHHHHHH
Q psy10366 145 TGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMG--ETQEEDRRFIVDLVIQKM 220 (340)
Q Consensus 145 vgga~~e~~~~~ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~--g~~~~~~~~IA~~vi~~i 220 (340)
..... -.-++.+++++++.+++++++--+++.||++.+++|++||+|||.- ++-. -.+..++.++.+.++...
T Consensus 242 ~p~~~-l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~~g~~~viEiNpR--~~~~~~~~~~~tGvdl~~~~i~~a 316 (449)
T TIGR00514 242 APSPA-LTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDKNGEFYFMEMNTR--IQVEHPVTEMITGVDLIKEQIRIA 316 (449)
T ss_pred CCCCC-CCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeCCCCEEEEEEECC--CCCCcceeehhcCCcHHHHHHHHH
Confidence 10000 0011234567788888898866677889999998899999999965 4332 124578888888877654
No 37
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.68 E-value=1.5e-15 Score=153.01 Aligned_cols=201 Identities=15% Similarity=0.153 Sum_probs=136.2
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccc-c-CCCc-------cc-ccEEEecCCC
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITY-Y-PNFK-------EM-YPVVFKIGHA 79 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~-~-~~~~-------~~-~PvVvKp~~G 79 (340)
.+...++..|++++ ++++++.+|+||. .+.++++++| +|++|.++ . .+.. .+ ||+||||..|
T Consensus 90 ~~~~~~e~~gi~~~g~~~~~~~~~~DK~----~~r~~l~~~g---Ip~pp~~~~~v~~~~~~~~~~~~~g~PvvvKP~~g 162 (451)
T PRK08591 90 DFAEICEDSGFTFIGPSAETIRLMGDKV----TAKATMKKAG---VPVVPGSDGPVDDEEEALAIAKEIGYPVIIKATAG 162 (451)
T ss_pred HHHHHHHHCCCceECcCHHHHHHhcCHH----HHHHHHHHcC---CCCCCCcccccCCHHHHHHHHHHcCCCEEEEECCC
Confidence 56778999999864 8999999999994 4445589999 68555432 1 1211 23 9999999999
Q ss_pred CcccceEEecChhhHHHHHHHHHh------hCceEEeecCCCCCCcEEEEEEC---CeEEEEEEEecCCCcccc--c---
Q psy10366 80 HSGFGKVRVESNQDFQDMAGVVAV------ANTYCTTEPYIDSKFDVHVQKIG---SNYKAFQRKSISGNWKTN--T--- 145 (340)
Q Consensus 80 s~G~Gv~lv~~~~~l~~i~~~l~~------~~~~~~vQefI~~g~DIRv~VIG---~~v~A~~R~s~~~~WktN--v--- 145 (340)
++|+|+.+++|.+++......... .+..+++|+||+.++.+-+.+++ +++.++.-+. ..-.+.+ +
T Consensus 163 ~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~-~~~~~~~~~~~~~ 241 (451)
T PRK08591 163 GGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERD-CSLQRRHQKVLEE 241 (451)
T ss_pred CCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEeccc-ccceecceeEEEE
Confidence 999999999999998887765322 13456789999876778877774 3454432110 0001111 0
Q ss_pred CCceeeecCCChHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccc--cchhHHHHHHHHHHHHHHH
Q psy10366 146 GSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMG--ETQEEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 146 gga~~e~~~~~ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~--g~~~~~~~~IA~~vi~~i~ 221 (340)
+.+..-.-++.+++++++.+++++++--+++.||++.+++|++||+|||.. ++-. -++..++.++.+.++....
T Consensus 242 ~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~~g~~~viEINpR--~~~~~~~~~~~~Gvdl~~~~i~~a~ 317 (451)
T PRK08591 242 APSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEKNGEFYFIEMNTR--IQVEHPVTEMITGVDLVKEQIRIAA 317 (451)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcCCCCEEEEEEECC--CCccchhhhhhhCCCHHHHHHHHHC
Confidence 001000112336677888888998865566779999998889999999975 4322 1345678888888877554
No 38
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.68 E-value=1.3e-15 Score=150.55 Aligned_cols=179 Identities=17% Similarity=0.207 Sum_probs=126.5
Q ss_pred HHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc-ccEEEecCC-CCc
Q psy10366 11 NLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM-YPVVFKIGH-AHS 81 (340)
Q Consensus 11 ~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~PvVvKp~~-Gs~ 81 (340)
..+..|+.. .++.++++++.+|+|| ..+-++|+++| +|.+++....+.. ++ ||+|+||.. |+.
T Consensus 77 ~~l~~l~~~-~~~~p~~~~~~~~~dK----~~~k~~l~~~G---ip~p~~~~v~s~~~l~~~~~~~g~P~vlKp~~~g~~ 148 (372)
T PRK06019 77 EALDALAAR-VPVPPGPDALAIAQDR----LTEKQFLDKLG---IPVAPFAVVDSAEDLEAALADLGLPAVLKTRRGGYD 148 (372)
T ss_pred HHHHHHhcC-CeeCcCHHHHHHhcCH----HHHHHHHHHCC---CCCCCceEeCCHHHHHHHHHHcCCcEEEEeCCCCcC
Confidence 356678777 6789999999999999 44455689999 6855543333222 23 899999998 478
Q ss_pred ccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEEC---CeEEEEEEEecCCCcccc-cCCceeeecCCC-
Q psy10366 82 GFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIG---SNYKAFQRKSISGNWKTN-TGSAMLEQIPMT- 156 (340)
Q Consensus 82 G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG---~~v~A~~R~s~~~~WktN-vgga~~e~~~~~- 156 (340)
|+|+.++++.++++...+.+. ..-+++|+||+.++.+.|.++. |++..+-. ..++..| +-.....|..++
T Consensus 149 g~Gv~~v~~~~el~~a~~~~~--~~~~ivEe~I~~~~E~sv~~~~~~~G~~~~~p~---~e~~~~~gi~~~~~~pa~~~~ 223 (372)
T PRK06019 149 GKGQWVIRSAEDLEAAWALLG--SVPCILEEFVPFEREVSVIVARGRDGEVVFYPL---VENVHRNGILRTSIAPARISA 223 (372)
T ss_pred CCCeEEECCHHHHHHHHHhcC--CCCEEEEecCCCCeEEEEEEEECCCCCEEEeCC---cccEEeCCEEEEEECCCCCCH
Confidence 999999999999888776552 2345689999998999998773 45543321 1222222 111122233343
Q ss_pred ---hHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccc
Q psy10366 157 ---DHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGET 204 (340)
Q Consensus 157 ---ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~ 204 (340)
++.++++.+++++++..++++||++.+++|++||+|+|.. |+=.|+
T Consensus 224 ~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~dg~~~v~EinpR--~~~sg~ 272 (372)
T PRK06019 224 ELQAQAEEIASRIAEELDYVGVLAVEFFVTGDGELLVNEIAPR--PHNSGH 272 (372)
T ss_pred HHHHHHHHHHHHHHHHcCccceeEEEEEEcCCCeEEEEEecCC--ccCccc
Confidence 4667888888888866678899999998998999999976 655554
No 39
>PRK08462 biotin carboxylase; Validated
Probab=99.67 E-value=4.6e-15 Score=149.44 Aligned_cols=201 Identities=17% Similarity=0.217 Sum_probs=134.6
Q ss_pred HHHHHHHHhCCCcc-cCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCccccccc--CCC-------ccc-ccEEEecCC
Q psy10366 10 KNLLLGFNIGGIPS-INTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYY--PNF-------KEM-YPVVFKIGH 78 (340)
Q Consensus 10 r~vl~~le~~Gvpv-iNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~--~~~-------~~~-~PvVvKp~~ 78 (340)
..+...+|..|+++ -++++++.+|+|| ..+.++++++| +|++|.++. ... +++ ||+||||..
T Consensus 91 ~~~a~~~e~~Gi~~~g~~~~~~~~~~dK----~~~r~~l~~~g---Ip~pp~~~~~~~~~~~~~~~~~~~g~PvvvKP~~ 163 (445)
T PRK08462 91 QNFVEICSHHNIKFIGPSVEVMALMSDK----SKAKEVMKRAG---VPVIPGSDGALKSYEEAKKIAKEIGYPVILKAAA 163 (445)
T ss_pred HHHHHHHHHCCCeEECcCHHHHHHhCCH----HHHHHHHHHCC---CCCCCCcccccCCHHHHHHHHHHcCCCEEEEeCC
Confidence 55667789999986 4899999999999 45555688999 685554321 111 123 999999999
Q ss_pred CCcccceEEecChhhHHHHHHHHH-----h-hCceEEeecCCCCCCcEEEEEECC---eEEEEE-EE-ec-CCCcccccC
Q psy10366 79 AHSGFGKVRVESNQDFQDMAGVVA-----V-ANTYCTTEPYIDSKFDVHVQKIGS---NYKAFQ-RK-SI-SGNWKTNTG 146 (340)
Q Consensus 79 Gs~G~Gv~lv~~~~~l~~i~~~l~-----~-~~~~~~vQefI~~g~DIRv~VIG~---~v~A~~-R~-s~-~~~WktNvg 146 (340)
|++|+|+.+++|.+++........ . .+..+++|+||+.++.+.+.++++ +++... |. +. ..+++....
T Consensus 164 g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~~~~g~~~~~g~~~~~~~~~~~~~~~~ 243 (445)
T PRK08462 164 GGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDCSLQRRHQKLIEE 243 (445)
T ss_pred CCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCeEEEEEEEECCCCCEEEEEeccccceecccceEEE
Confidence 999999999999999887654321 1 123567899998777799988853 444331 21 10 012222111
Q ss_pred C-ceeeecCCChHHHHHHHHHHHHhCCCc-EEEEeEEEcCCCCeEEEeecCCcccccc-cc-hhHHHHHHHHHHHHHH
Q psy10366 147 S-AMLEQIPMTDHYKLWIDEVAELFGGLD-ICALEIIVGKDGKEHIIEVNDSALSLMG-ET-QEEDRRFIVDLVIQKM 220 (340)
Q Consensus 147 g-a~~e~~~~~ee~~~~a~~aa~a~~Gld-iaGVDll~~~dG~~~VlEVN~s~~P~~~-g~-~~~~~~~IA~~vi~~i 220 (340)
. +..-.-...+++++++.++++++ |+. .+-||++.+++|++||+|||.. ++-+ .+ +..++.|+++.+++..
T Consensus 244 ~p~~~l~~~~~~~i~~~a~~~~~al-g~~G~~~ve~~~~~~g~~~viEiNpR--~~~~~~~~~~~~Gidl~~~~i~~a 318 (445)
T PRK08462 244 SPAVVLDEKTRERLHETAIKAAKAI-GYEGAGTFEFLLDSNLDFYFMEMNTR--LQVEHTVSEMVSGLDLIEWMIKIA 318 (445)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHc-CCCCcceEEEEEeCCCCEEEEEEECC--cCcCcceehhhhCCCHHHHHHHHH
Confidence 0 10000012256788888899988 553 4449999998888999999965 4322 12 4567899999888754
No 40
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=99.66 E-value=3.3e-15 Score=153.48 Aligned_cols=197 Identities=18% Similarity=0.215 Sum_probs=136.9
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCccccccc--CCCc-------cc-ccEEEecCCC
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYY--PNFK-------EM-YPVVFKIGHA 79 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~--~~~~-------~~-~PvVvKp~~G 79 (340)
.+.+.++..|++++ ++++++..|+|| ..+.++++++| +|++|.+.. .+.. ++ ||+||||..|
T Consensus 90 ~~a~~~e~~gi~~iGps~~~i~~~~DK----~~~k~~l~~~G---Vpv~p~~~~~v~~~~e~~~~a~~igyPvvIKp~~G 162 (499)
T PRK08654 90 EFAKACEKAGIVFIGPSSDVIEAMGSK----INAKKLMKKAG---VPVLPGTEEGIEDIEEAKEIAEEIGYPVIIKASAG 162 (499)
T ss_pred HHHHHHHHCCCcEECCCHHHHHHhCCH----HHHHHHHHHcC---cCCCCCcCcCCCCHHHHHHHHHHhCCCEEEEeCCC
Confidence 56788999999976 689999999999 45556689999 687666543 1111 22 9999999999
Q ss_pred CcccceEEecChhhHHHHHHHHHh------hCceEEeecCCCCCCcEEEEEECC---eEEE-EEEEecCCCcccccCCce
Q psy10366 80 HSGFGKVRVESNQDFQDMAGVVAV------ANTYCTTEPYIDSKFDVHVQKIGS---NYKA-FQRKSISGNWKTNTGSAM 149 (340)
Q Consensus 80 s~G~Gv~lv~~~~~l~~i~~~l~~------~~~~~~vQefI~~g~DIRv~VIG~---~v~A-~~R~s~~~~WktNvgga~ 149 (340)
++|+|+.+++|.++|+...+.... ....+++|+||+.++.+.|+++++ ++++ ..|.. + -.+-| .-.
T Consensus 163 gGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ieVqvl~d~~G~vv~l~~rec-s-iqrr~--qk~ 238 (499)
T PRK08654 163 GGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQILADKHGNVIHLGDREC-S-IQRRH--QKL 238 (499)
T ss_pred CCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcEEEEEEEEcCCCCEEEEeeecc-c-cccCc--cce
Confidence 999999999999998887765431 123467899999888899999965 3544 33421 1 11111 001
Q ss_pred ee--e-----cCCChHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCccccccc--chhHHHHHHHHHHHHHH
Q psy10366 150 LE--Q-----IPMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGE--TQEEDRRFIVDLVIQKM 220 (340)
Q Consensus 150 ~e--~-----~~~~ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g--~~~~~~~~IA~~vi~~i 220 (340)
.| | -++.++++++|.+++++++--+.+.||++.+ +|++|++|||.. +..+. .+..++.|+.+..+.-.
T Consensus 239 ie~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~-~g~~yflEiNpR--lqveh~vte~~tGvDlv~~~i~~A 315 (499)
T PRK08654 239 IEEAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYS-NGNFYFLEMNTR--LQVEHPITEMVTGIDIVKEQIKIA 315 (499)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEE-CCcEEEEEEECC--CCCCCceeehhhCCCHHHHHHHHh
Confidence 11 1 1123456788888899884334455999996 678999999965 44332 35678999888777655
Q ss_pred H
Q psy10366 221 Q 221 (340)
Q Consensus 221 ~ 221 (340)
.
T Consensus 316 ~ 316 (499)
T PRK08654 316 A 316 (499)
T ss_pred c
Confidence 3
No 41
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.66 E-value=3.9e-15 Score=148.86 Aligned_cols=199 Identities=19% Similarity=0.236 Sum_probs=128.9
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccC-CCc-------cc-ccEEEecCCCC
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYP-NFK-------EM-YPVVFKIGHAH 80 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~-~~~-------~~-~PvVvKp~~Gs 80 (340)
.+...|+..|+|++ ++.+++.+|.|| ..+.++|+++| +| +|.++.. ... ++ ||+||||..|+
T Consensus 77 ~~~~~l~~~gi~~~g~~~~~~~~~~dK----~~~k~~l~~~g---ip-~p~~~~~~~~~~~~~~~~~~~~P~VvKP~~~~ 148 (420)
T PRK00885 77 GIVDAFRAAGLPIFGPTKAAAQLEGSK----AFAKDFMARYG---IP-TAAYETFTDAEEALAYLDEKGAPIVVKADGLA 148 (420)
T ss_pred HHHHHHHHCCCcEECcCHHHHHHHcCH----HHHHHHHHHcC---CC-CCCeEEeCCHHHHHHHHHHcCCCEEEEeCCCC
Confidence 45667899999987 678899999999 44445689999 68 4443322 211 23 89999999999
Q ss_pred cccceEEecChhhHHHHHHHHHh------hCceEEeecCCCCCCcEEEEEE--CCeEEE--EEE---EecCCCcccccCC
Q psy10366 81 SGFGKVRVESNQDFQDMAGVVAV------ANTYCTTEPYIDSKFDVHVQKI--GSNYKA--FQR---KSISGNWKTNTGS 147 (340)
Q Consensus 81 ~G~Gv~lv~~~~~l~~i~~~l~~------~~~~~~vQefI~~g~DIRv~VI--G~~v~A--~~R---~s~~~~WktNvgg 147 (340)
+|+|+.+++|.+++....+.+.. ....+++||||+ |+.+-|.++ |+.+.. ..| +.-.++|..|+++
T Consensus 149 gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~-G~E~sv~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 227 (420)
T PRK00885 149 AGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD-GEEASFFAFVDGENVLPLPTAQDHKRAGDGDTGPNTGG 227 (420)
T ss_pred CCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC-CcEEEEEEEECCCceEeceeeEeeeecccCCCCCCCCC
Confidence 99999999999998887765432 123578999998 455555554 444543 222 2235678888863
Q ss_pred -ceeeecC-CChHHH-----HHHHHHHHHhC--CC---cEEEEeEEEcCCCCeEEEeecCCcccccccc---hhHHHHHH
Q psy10366 148 -AMLEQIP-MTDHYK-----LWIDEVAELFG--GL---DICALEIIVGKDGKEHIIEVNDSALSLMGET---QEEDRRFI 212 (340)
Q Consensus 148 -a~~e~~~-~~ee~~-----~~a~~aa~a~~--Gl---diaGVDll~~~dG~~~VlEVN~s~~P~~~g~---~~~~~~~I 212 (340)
+...+.+ ++++.. +++.++.+++. |+ .++.||++.+++| ++|+|+|.. ++=.++ ......++
T Consensus 228 ~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~~g-~~viEin~R--~g~~~~~~~~~~~~~d~ 304 (420)
T PRK00885 228 MGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKDG-PKVIEFNAR--FGDPETQVVLPRLKSDL 304 (420)
T ss_pred CceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEECCC-cEEEEEecc--cCCccHHhhhhhccCCH
Confidence 4444554 565443 24444444432 55 4477899999887 699999965 432112 22223455
Q ss_pred HHHHHHHHH
Q psy10366 213 VDLVIQKMQ 221 (340)
Q Consensus 213 A~~vi~~i~ 221 (340)
.+.+++-..
T Consensus 305 ~~~~~~~~~ 313 (420)
T PRK00885 305 VELLLAAAD 313 (420)
T ss_pred HHHHHHHHc
Confidence 555554443
No 42
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.66 E-value=6.2e-15 Score=148.13 Aligned_cols=202 Identities=15% Similarity=0.150 Sum_probs=136.0
Q ss_pred HHHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCccccc-cc-CCCc-------cc-ccEEEecCC
Q psy10366 10 KNLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDIT-YY-PNFK-------EM-YPVVFKIGH 78 (340)
Q Consensus 10 r~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t-~~-~~~~-------~~-~PvVvKp~~ 78 (340)
..+...|+..|++++ ++++++.+|+|| ..+.++|+++| +|++|.. +. .+.. .+ ||+||||..
T Consensus 89 ~~~~~~~~~~g~~~~g~~~~~~~~~~dK----~~~k~~l~~~g---Ip~p~~~~~~~~~~~e~~~~~~~~~~P~VvKP~~ 161 (450)
T PRK06111 89 ASFAERCKEEGIVFIGPSADIIAKMGSK----IEARRAMQAAG---VPVVPGITTNLEDAEEAIAIARQIGYPVMLKASA 161 (450)
T ss_pred HHHHHHHHHCCCeEECCCHHHHHHhCCH----HHHHHHHHHCC---CCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEeCC
Confidence 457788999999965 779999999999 44455689999 6855431 21 1111 22 999999999
Q ss_pred CCcccceEEecChhhHHHHHHHHHh------hCceEEeecCCCCCCcEEEEEEC---CeEEEEEEEecCCCcccc--cCC
Q psy10366 79 AHSGFGKVRVESNQDFQDMAGVVAV------ANTYCTTEPYIDSKFDVHVQKIG---SNYKAFQRKSISGNWKTN--TGS 147 (340)
Q Consensus 79 Gs~G~Gv~lv~~~~~l~~i~~~l~~------~~~~~~vQefI~~g~DIRv~VIG---~~v~A~~R~s~~~~WktN--vgg 147 (340)
|++|+|+.+++|.+++....+.... ....+++||||+.++.+.+.++. |++..+..+. ...++.+ +-.
T Consensus 162 g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~g~~~~~~~~~-~~~~~~~~~~~~ 240 (450)
T PRK06111 162 GGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLADTHGNTVYLWERE-CSVQRRHQKVIE 240 (450)
T ss_pred CCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcEEEEEEEEcCCCCEEEEEeec-ccccccccceEE
Confidence 9999999999999998887765321 12356789999866778877764 3454433211 1112222 100
Q ss_pred ceeeec---CCChHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCccccc--ccchhHHHHHHHHHHHHHHH
Q psy10366 148 AMLEQI---PMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLM--GETQEEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 148 a~~e~~---~~~ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~--~g~~~~~~~~IA~~vi~~i~ 221 (340)
....+. ++.+++++++.+++++++--+++.||++.+++|++||+|||.. ++- .-++..++.++.+.++....
T Consensus 241 ~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~g~~~viEiN~R--~~~~~~~~~~~~Gvd~~~~~i~~~~ 317 (450)
T PRK06111 241 EAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNFYFLEMNTR--LQVEHPVTEEITGIDLVEQQLRIAA 317 (450)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEECC--cCCcchhhHHHhCcCHHHHHHHHhc
Confidence 000011 1235677888889998843367889999998887999999975 432 22345677888888877654
No 43
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.65 E-value=3.4e-15 Score=165.53 Aligned_cols=202 Identities=24% Similarity=0.254 Sum_probs=140.9
Q ss_pred HHHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccC--CCc-------cc-ccEEEecCC
Q psy10366 10 KNLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYP--NFK-------EM-YPVVFKIGH 78 (340)
Q Consensus 10 r~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~--~~~-------~~-~PvVvKp~~ 78 (340)
..++..++..|++++ ++++++.+|.|| ..+.++++++| +|++|.+..+ +.. ++ ||+||||..
T Consensus 89 ~~~a~~le~~Gi~fiGps~e~i~~~~DK----~~ar~la~~~G---VPvpp~t~~~v~~~eea~~~ae~iGyPvIVKP~~ 161 (1143)
T TIGR01235 89 SEFADACNKAGIIFIGPKAEVMDQLGDK----VAARNLAIKAG---VPVVPGTDGPPETMEEVLDFAAAIGYPVIIKASW 161 (1143)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHhcCH----HHHHHHHHHcC---CCCCCCcccCcCCHHHHHHHHHHcCCCEEEEECC
Confidence 456778899999977 678999999999 45555689999 6866654322 111 23 999999999
Q ss_pred CCcccceEEecChhhHHHHHHHHHh------hCceEEeecCCCCCCcEEEEEECCe---EEE-EEEEe-c-CCCccccc-
Q psy10366 79 AHSGFGKVRVESNQDFQDMAGVVAV------ANTYCTTEPYIDSKFDVHVQKIGSN---YKA-FQRKS-I-SGNWKTNT- 145 (340)
Q Consensus 79 Gs~G~Gv~lv~~~~~l~~i~~~l~~------~~~~~~vQefI~~g~DIRv~VIG~~---v~A-~~R~s-~-~~~WktNv- 145 (340)
|++|+|+.++++.++++...+.... ....+++|+||+..+.|.|.++|+. ++. +.|.. . ..+++...
T Consensus 162 GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~reIeVqVlgD~~G~vv~l~eRdcsvqrr~qk~ie~ 241 (1143)
T TIGR01235 162 GGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGDKHGNVVHLFERDCSVQRRHQKVVEV 241 (1143)
T ss_pred CCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeEEEEEEEEeCCCCEEEEEeccccccccCceEEEE
Confidence 9999999999999998887665321 1344678999998889999999664 444 44421 1 11233321
Q ss_pred CCceeeecCCChHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccc--hhHHHHHHHHHHHHHH
Q psy10366 146 GSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGET--QEEDRRFIVDLVIQKM 220 (340)
Q Consensus 146 gga~~e~~~~~ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~--~~~~~~~IA~~vi~~i 220 (340)
+.+....-++.+++.++|.+++++++-.+++.||++.+++|++|++|||.. +..+.. +..++.+|++..+.-.
T Consensus 242 aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~dg~~yfIEVNPR--iqveh~vTe~vtGiDlv~~qi~iA 316 (1143)
T TIGR01235 242 APAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDNDGKFYFIEVNPR--IQVEHTVTEEITGIDIVQAQIHIA 316 (1143)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeCCCcEEEEEeecC--CCcchhHHHHHhCcHHHHHHHHHH
Confidence 111111112234667888888888854556779999998889999999966 554433 4578999988766543
No 44
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.63 E-value=9.3e-15 Score=148.74 Aligned_cols=200 Identities=16% Similarity=0.149 Sum_probs=135.3
Q ss_pred HHHHHHHHhCCCc-ccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCccccc-cc-CCCc-------cc-ccEEEecCC
Q psy10366 10 KNLLLGFNIGGIP-SINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDIT-YY-PNFK-------EM-YPVVFKIGH 78 (340)
Q Consensus 10 r~vl~~le~~Gvp-viNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t-~~-~~~~-------~~-~PvVvKp~~ 78 (340)
-.++..++..|++ +-++++++.+|+|| ..+-++++++| +|++|.+ .. .+.. ++ ||+||||..
T Consensus 92 ~~~~~~~e~~gi~~igps~~ai~~~~DK----~~~r~~l~~~G---Ip~~p~~~~~v~~~~e~~~~~~~igyPvvvKp~~ 164 (467)
T PRK12833 92 AAFAEAVEAAGLIFVGPDAQTIRTMGDK----ARARRTARRAG---VPTVPGSDGVVASLDAALEVAARIGYPLMIKAAA 164 (467)
T ss_pred HHHHHHHHHcCCCccCCCHHHHHHhcCH----HHHHHHHHHcC---CCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEECC
Confidence 3566788999997 56789999999999 45556689999 6865554 12 1211 23 999999999
Q ss_pred CCcccceEEecChhhHHHHHHHHHh------hCceEEeecCCCCCCcEEEEEECCe--EEE-EEEEecCCCccccc---C
Q psy10366 79 AHSGFGKVRVESNQDFQDMAGVVAV------ANTYCTTEPYIDSKFDVHVQKIGSN--YKA-FQRKSISGNWKTNT---G 146 (340)
Q Consensus 79 Gs~G~Gv~lv~~~~~l~~i~~~l~~------~~~~~~vQefI~~g~DIRv~VIG~~--v~A-~~R~s~~~~WktNv---g 146 (340)
|++|+|+.+++|.+++......... ....+++|+||+.++.+-|.|+++. ++. +.|... -.+.+. .
T Consensus 165 gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~~ei~v~v~~dg~~~~~~~~~~~~--~~r~~~ki~e 242 (467)
T PRK12833 165 GGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGERVVHLFERECS--LQRRRQKILE 242 (467)
T ss_pred CCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEeCCCcEEEEEEeecc--cccCCccEEE
Confidence 9999999999999998876543211 1334678999998899999999763 443 334211 111111 1
Q ss_pred Ccee--eecCCChHHHHHHHHHHHHhCCCcEEEEeEEEc-CCCCeEEEeecCCccccccc--chhHHHHHHHHHHHHHH
Q psy10366 147 SAML--EQIPMTDHYKLWIDEVAELFGGLDICALEIIVG-KDGKEHIIEVNDSALSLMGE--TQEEDRRFIVDLVIQKM 220 (340)
Q Consensus 147 ga~~--e~~~~~ee~~~~a~~aa~a~~GldiaGVDll~~-~dG~~~VlEVN~s~~P~~~g--~~~~~~~~IA~~vi~~i 220 (340)
.+-. -.-...+++++++.+++++++=-..+.||++.+ ++|++||+|||.- +.-.. .+..++.|+.+.++...
T Consensus 243 ~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~~~iEvNpR--~~~~~~~te~~tGvdl~~~~i~~a 319 (467)
T PRK12833 243 EAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFYFIEMNTR--IQVEHPVTEAITGIDLVQEMLRIA 319 (467)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCEEEEEEECC--CCcchhhhHHHhCCCHHHHHHHHH
Confidence 1100 001123466788888888885335567999987 5788999999965 43222 23467888888877644
No 45
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.62 E-value=1.5e-14 Score=156.13 Aligned_cols=187 Identities=18% Similarity=0.253 Sum_probs=137.0
Q ss_pred cCChHHHHHHHHhCCCcccC-ChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCC------C--------ccc-
Q psy10366 6 KQDHKNLLLGFNIGGIPSIN-TLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPN------F--------KEM- 69 (340)
Q Consensus 6 ~~~~r~vl~~le~~GvpviN-s~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~------~--------~~~- 69 (340)
+|| ..+--.||.+|+|.+. +..+..+|.|| ..+-++++++| ||++++..... . +.+
T Consensus 539 ged-g~iq~~le~~gipy~Gs~~~asal~~DK----~~~K~~l~~~G---Ipt~~~~~~~~~~~~~~~~~~~~~~~~~lg 610 (809)
T PRK14573 539 GED-GTMQGFLEIIGKPYTGPSLAFSAIAMDK----VLTKRFASDVG---VPVVPYQPLTLAGWKREPELCLAHIVEAFS 610 (809)
T ss_pred CCC-hHHHHHHHHcCCCeeCCCHHHHHHHcCH----HHHHHHHHHCC---CCCCCEEEEechhcccChHHHHHHHHHhcC
Confidence 344 3455569999999876 88899999999 55555689999 68655433221 0 123
Q ss_pred ccEEEecCCCCcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCeE----EE--EEEEecCCC---
Q psy10366 70 YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNY----KA--FQRKSISGN--- 140 (340)
Q Consensus 70 ~PvVvKp~~Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~v----~A--~~R~s~~~~--- 140 (340)
||+||||..+..|.|+.+++|.++++..+.....+...+++||||..|+.+.|.|+|+.- ++ ..+.. ...
T Consensus 611 ~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~~grEi~v~vl~~~~~~~~~~~~~e~~~-~~~f~d 689 (809)
T PRK14573 611 FPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLYDTDVFVEESRLGSREIEVSCLGDGSSAYVIAGPHERRG-SGGFID 689 (809)
T ss_pred CCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccCCCEEEEEEEEeCCCCceEeccceEEcc-CCCeeC
Confidence 999999999999999999999999988877654455667899999999999999998752 11 22321 222
Q ss_pred cccccC--Cc--ee--eecCCC----hHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCccccccc
Q psy10366 141 WKTNTG--SA--ML--EQIPMT----DHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGE 203 (340)
Q Consensus 141 WktNvg--ga--~~--e~~~~~----ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g 203 (340)
+..+.. +. .. .|..++ ++.+++|.++.++++.-+++.||++.+++|.+||+|||.. ||+-.
T Consensus 690 y~~Ky~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~v~~~g~~yv~EiNt~--PG~t~ 760 (809)
T PRK14573 690 YQEKYGLSGKSSAQIVFDLDLSKESQEQVLELAERIYRLLQGKGSCRIDFFLDEEGNFWLSEMNPI--PGMTE 760 (809)
T ss_pred chhcccCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCC--CCCCc
Confidence 333431 21 11 133344 5668888899999988899999999998999999999966 99855
No 46
>PRK07206 hypothetical protein; Provisional
Probab=99.62 E-value=9.2e-15 Score=145.35 Aligned_cols=194 Identities=14% Similarity=0.132 Sum_probs=131.0
Q ss_pred HHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCC-cc-------c-c---cEEEecCCCCccc
Q psy10366 16 FNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF-KE-------M-Y---PVVFKIGHAHSGF 83 (340)
Q Consensus 16 le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~-~~-------~-~---PvVvKp~~Gs~G~ 83 (340)
-+..|+|..|++.++..|+|| ..+.++|+++| +| +|.++.... .+ + | |+||||..|++|+
T Consensus 89 ~~~l~l~~~~~~~~~~~~~dK----~~~r~~l~~~g---i~-~p~~~~~~~~~e~~~~~~~~g~~~~P~VvKP~~g~gs~ 160 (416)
T PRK07206 89 AEILTPQYSNDPALSSARRNK----AEMINALAEAG---LP-AARQINTADWEEAEAWLRENGLIDRPVVIKPLESAGSD 160 (416)
T ss_pred HHhcCCCcCCChhhHHHhhCH----HHHHHHHHHcC---CC-cccEEecCCHHHHHHHHHhcCCCCCCEEEeCCCCCCCC
Confidence 356788889999999999999 44444588999 68 444443221 11 2 5 9999999999999
Q ss_pred ceEEecChhhHHHHHHHHHhh-------CceEEeecCCC-CCCcEEEEEECCeEE--EEEEEec--CCCcccccCCceee
Q psy10366 84 GKVRVESNQDFQDMAGVVAVA-------NTYCTTEPYID-SKFDVHVQKIGSNYK--AFQRKSI--SGNWKTNTGSAMLE 151 (340)
Q Consensus 84 Gv~lv~~~~~l~~i~~~l~~~-------~~~~~vQefI~-~g~DIRv~VIG~~v~--A~~R~s~--~~~WktNvgga~~e 151 (340)
|+.+++|.++++.....+... ...+++||||+ .-+.+-+++.+|++. ++.++.. .++..+........
T Consensus 161 gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~G~E~sv~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (416)
T PRK07206 161 GVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLIGTEYVVNFVSLDGNHLVTEIVRYHKTSLNSGSTVYDYDEFL 240 (416)
T ss_pred CEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccccEEEEEEEEEECCEEEEEEeEEeeecccCCCCceecccccC
Confidence 999999999988766554311 24567899999 467888888888863 3333211 01111111111111
Q ss_pred ec--CCChHHHHHHHHHHHHhCCC--cEEEEeEEEcCCCCeEEEeecCCccccccc----chhHHHHHHHHHHHHHHH
Q psy10366 152 QI--PMTDHYKLWIDEVAELFGGL--DICALEIIVGKDGKEHIIEVNDSALSLMGE----TQEEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 152 ~~--~~~ee~~~~a~~aa~a~~Gl--diaGVDll~~~dG~~~VlEVN~s~~P~~~g----~~~~~~~~IA~~vi~~i~ 221 (340)
+. +..+++++++.++.+++ |+ .++.+|++.+++| ++|+|||.. ++-.. ++..++.+..+++++...
T Consensus 241 p~~~~~~~~i~~~~~~~~~al-g~~~G~~h~E~~~~~~g-~~liEin~R--~~G~~~~~~~~~~~G~d~~~~~~~~~l 314 (416)
T PRK07206 241 DYSEPEYQELVDYTKQALDAL-GIKNGPAHAEVMLTADG-PRLIEIGAR--LDGGLHPDVARLATGDSQLDATVESLA 314 (416)
T ss_pred CccHHHHHHHHHHHHHHHHHc-CCccCCceEEEEEcCCC-CEEEEECCc--cCCCCccchhhhhcCcCHHHHHHHHHh
Confidence 11 12345667788888888 65 6788999999887 589999976 43222 356778999988887654
No 47
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.62 E-value=1.5e-14 Score=160.33 Aligned_cols=199 Identities=15% Similarity=0.213 Sum_probs=137.4
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc-ccEEEecCCCCc
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM-YPVVFKIGHAHS 81 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~PvVvKp~~Gs~ 81 (340)
++...||..|+|++ |+++++.+|.|| ..+.++|+++| +|.++.....+.+ ++ ||+||||..|++
T Consensus 644 ~la~~le~~Gi~ilg~s~~ai~~~~DK----~~~~~~L~~~G---Ip~P~~~~~~s~ee~~~~~~~igyPvvVKP~~~~G 716 (1066)
T PRK05294 644 KLAKALEAAGVPILGTSPDAIDLAEDR----ERFSKLLEKLG---IPQPPNGTATSVEEALEVAEEIGYPVLVRPSYVLG 716 (1066)
T ss_pred HHHHHHHHCCCceeCCCHHHHHHhCCH----HHHHHHHHHcC---cCCCCeEEECCHHHHHHHHHhcCCCeEEEeCCCCC
Confidence 56778999999986 688999999999 44556789999 6844433222222 23 999999999999
Q ss_pred ccceEEecChhhHHHHHHHHHh--hCceEEeecCCC-C-CCcEEEEEECCeEE--EEEEEecCCCcccccC-C--ce-ee
Q psy10366 82 GFGKVRVESNQDFQDMAGVVAV--ANTYCTTEPYID-S-KFDVHVQKIGSNYK--AFQRKSISGNWKTNTG-S--AM-LE 151 (340)
Q Consensus 82 G~Gv~lv~~~~~l~~i~~~l~~--~~~~~~vQefI~-~-g~DIRv~VIG~~v~--A~~R~s~~~~WktNvg-g--a~-~e 151 (340)
|+|+.+++|.+++......... ....+++|+||+ . .+++.++.-|+.+. +.+++-. +.+++ | .. ..
T Consensus 717 g~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~G~~E~sV~~v~dg~~v~i~~i~e~i~----~~gv~~Gds~~~~p 792 (1066)
T PRK05294 717 GRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLEGAIEVDVDAICDGEDVLIGGIMEHIE----EAGVHSGDSACSLP 792 (1066)
T ss_pred CCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCCCCEEEEEEEEecCCeEEEeeeEEeee----eccccCCCCcEEec
Confidence 9999999999998887765332 234578999998 4 67888876565442 3444311 12232 1 11 11
Q ss_pred ecCCCh----HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHHH
Q psy10366 152 QIPMTD----HYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 152 ~~~~~e----e~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i~ 221 (340)
+..+++ ++++++.+++++++--+++.||++.+ +|++||+|||...-..+..+...++.++++.+++.+.
T Consensus 793 ~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~-~~~~yViEiNpR~s~t~~~~s~atGi~~~~~~~~~~l 865 (1066)
T PRK05294 793 PQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVK-DDEVYVIEVNPRASRTVPFVSKATGVPLAKIAARVML 865 (1066)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEE-CCeEEEEEEecCCCccHHHHHHHhCccHHHHHHHHHc
Confidence 234553 55777788888874336777999997 4568999999651111223456789999999888664
No 48
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.61 E-value=1.5e-14 Score=142.75 Aligned_cols=174 Identities=18% Similarity=0.279 Sum_probs=119.6
Q ss_pred HHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHH-HHcCCCCCCcccccccCCCc-------cc-ccEEEecCCCCcc
Q psy10366 12 LLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQ-RKLGKENFPLIDITYYPNFK-------EM-YPVVFKIGHAHSG 82 (340)
Q Consensus 12 vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll-~~~G~~~~P~~~~t~~~~~~-------~~-~PvVvKp~~Gs~G 82 (340)
.+..++..|++++.+++++.+|.||.++. +++ +++| +|.+++..+.+.. ++ ||+|+||..|++|
T Consensus 90 ~~~~l~~~g~~~~~~~~a~~~~~dK~~~k----~~l~~~~g---ip~p~~~~~~s~~~l~~~~~~~g~P~VvKP~~g~~s 162 (395)
T PRK09288 90 ALVELEKEGFNVVPTARATRLTMNREGIR----RLAAEELG---LPTSPYRFADSLEELRAAVEEIGYPCVVKPVMSSSG 162 (395)
T ss_pred HHHHHHhcCCeeCCCHHHHHHHhCHHHHH----HHHHHhCC---CCCCCceEECCHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 45667888999999999999999994433 335 5789 6844433222222 23 9999999999999
Q ss_pred cceEEecChhhHHHHHHHHHhh----CceEEeecCCCCCCcEEEEEECC---eEEEEEEEecCCCcccccC-CceeeecC
Q psy10366 83 FGKVRVESNQDFQDMAGVVAVA----NTYCTTEPYIDSKFDVHVQKIGS---NYKAFQRKSISGNWKTNTG-SAMLEQIP 154 (340)
Q Consensus 83 ~Gv~lv~~~~~l~~i~~~l~~~----~~~~~vQefI~~g~DIRv~VIG~---~v~A~~R~s~~~~WktNvg-ga~~e~~~ 154 (340)
+|+.+++|.+++....+.+... ...+++||||+.++.+.|.++.+ +...+. .-++|+.+-. .....+..
T Consensus 163 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~~~~E~sv~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~ 239 (395)
T PRK09288 163 KGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFIDFDYEITLLTVRAVDGGTHFCA---PIGHRQEDGDYRESWQPQP 239 (395)
T ss_pred CCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecCCCEEEEEEEEEcCCCCEEEec---CcccEEECCEEEEEECCCC
Confidence 9999999999988877654321 24567899999888888887732 332211 1123332211 11122344
Q ss_pred CChH----HHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCC
Q psy10366 155 MTDH----YKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDS 196 (340)
Q Consensus 155 ~~ee----~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s 196 (340)
++++ .++++.++.++++.-+++.||++.+++ ++||+|+|..
T Consensus 240 l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~-~~~viEinpR 284 (395)
T PRK09288 240 MSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGD-EVYFSEVSPR 284 (395)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC-eEEEEEecCC
Confidence 4443 456788888888766888999999877 5899999976
No 49
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.61 E-value=4.2e-14 Score=143.12 Aligned_cols=205 Identities=16% Similarity=0.193 Sum_probs=135.2
Q ss_pred HHHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc-ccEEEecCCCC
Q psy10366 10 KNLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM-YPVVFKIGHAH 80 (340)
Q Consensus 10 r~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~PvVvKp~~Gs 80 (340)
-.++..|+..|+|++ .+..++.++.|| ..+-++++++| ||++++..+.+.. .+ ||+||||..|+
T Consensus 76 ~~~~d~l~~~Gi~~~Gps~~aa~l~~dK----~~~K~~l~~~G---Iptp~~~~~~~~~e~~~~~~~~g~PvVVKp~~~~ 148 (434)
T PLN02257 76 AGLADDLVKAGIPTFGPSAEAAALEGSK----NFMKDLCDKYK---IPTAKYETFTDPAAAKKYIKEQGAPIVVKADGLA 148 (434)
T ss_pred HHHHHHHHHCCCCEECChHHHHHHHcCH----HHHHHHHHHcC---CCCCCeEEeCCHHHHHHHHHHcCCCEEEEcCCCC
Confidence 367889999999977 888999999999 44455689999 6854332222211 23 89999999999
Q ss_pred cccceEEecChhhHHHHHHHHHh------hCceEEeecCCCCCCcEEEEEE-CCe-EEEE---E--EEecCCCcccccCC
Q psy10366 81 SGFGKVRVESNQDFQDMAGVVAV------ANTYCTTEPYIDSKFDVHVQKI-GSN-YKAF---Q--RKSISGNWKTNTGS 147 (340)
Q Consensus 81 ~G~Gv~lv~~~~~l~~i~~~l~~------~~~~~~vQefI~~g~DIRv~VI-G~~-v~A~---~--R~s~~~~WktNvgg 147 (340)
+|+||.++++.+++......+.. ....+++||||+ |..+-|+++ +|+ +.-+ . .+.-++|-+-|+++
T Consensus 149 ~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~-G~E~Sv~~~~dG~~~~pl~~~~dhkr~~d~d~g~ntgg 227 (434)
T PLN02257 149 AGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLD-GEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGG 227 (434)
T ss_pred CCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC-CCEEEEEEEECCCcEEEEEeeeecccccCCCCCCCCCC
Confidence 99999999999998776654321 134678999998 346666554 443 4321 1 12236778889874
Q ss_pred -ceeeecC-CChHHHH-HHHHH-------HHHhCCCcEEE---EeEEEc-CCCCeEEEeecCCcccccccch---hHHHH
Q psy10366 148 -AMLEQIP-MTDHYKL-WIDEV-------AELFGGLDICA---LEIIVG-KDGKEHIIEVNDSALSLMGETQ---EEDRR 210 (340)
Q Consensus 148 -a~~e~~~-~~ee~~~-~a~~a-------a~a~~GldiaG---VDll~~-~dG~~~VlEVN~s~~P~~~g~~---~~~~~ 210 (340)
+...+.+ ++++..+ ++..+ -++. |++|.| ||++.+ ++|+++|+|+|.. |+....+ .-...
T Consensus 228 mg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~-g~~y~Gvl~ve~ml~~~~g~p~vLE~N~R--~Gdpe~~~~l~~l~~ 304 (434)
T PLN02257 228 MGAYSPAPVLTPELESKVMETIIYPTVKGMAAE-GCKFVGVLYAGLMIEKKSGLPKLLEYNVR--FGDPECQVLMMRLES 304 (434)
T ss_pred CeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCCcEEEEEEEEEEEcCCCCEEEEEEECC--CCCCchheEehhhcC
Confidence 3333443 5665544 23332 2343 676666 788888 6788999999976 6644333 23456
Q ss_pred HHHHHHHHHHHhhcC
Q psy10366 211 FIVDLVIQKMQVSVL 225 (340)
Q Consensus 211 ~IA~~vi~~i~~~~~ 225 (340)
|+.+.++.-....+.
T Consensus 305 Dl~~~~~~~~~g~l~ 319 (434)
T PLN02257 305 DLAQVLLAACKGELS 319 (434)
T ss_pred CHHHHHHHHHcCCCC
Confidence 777766665554433
No 50
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.60 E-value=3.5e-14 Score=157.18 Aligned_cols=199 Identities=16% Similarity=0.212 Sum_probs=139.5
Q ss_pred HHHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCccccccc-CCCc-------cc-ccEEEecCCC
Q psy10366 10 KNLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYY-PNFK-------EM-YPVVFKIGHA 79 (340)
Q Consensus 10 r~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~-~~~~-------~~-~PvVvKp~~G 79 (340)
.++...|+..|+|++ |++++|.+|.|| ..+.++|+++| +|. |.++. .+.. ++ ||+||||..|
T Consensus 643 ~~la~~le~~Gi~i~G~s~~~i~~~~DK----~~f~~lL~~~G---Ip~-P~~~~v~s~ee~~~~~~~igyPvIVKP~~~ 714 (1050)
T TIGR01369 643 LNLAKALEEAGVPILGTSPESIDRAEDR----EKFSELLDELG---IPQ-PKWKTATSVEEAVEFASEIGYPVLVRPSYV 714 (1050)
T ss_pred HHHHHHHHHCCCcEECCCHHHHHHHCCH----HHHHHHHHHCC---cCC-CCeEEECCHHHHHHHHHhcCCCEEEEECCC
Confidence 356778999999987 899999999999 44556799999 684 44433 2221 23 9999999999
Q ss_pred CcccceEEecChhhHHHHHHHHHh--hCceEEeecCCCC--CCcEEEEEECCeEE--EEEEEecCCCcccccCCc---ee
Q psy10366 80 HSGFGKVRVESNQDFQDMAGVVAV--ANTYCTTEPYIDS--KFDVHVQKIGSNYK--AFQRKSISGNWKTNTGSA---ML 150 (340)
Q Consensus 80 s~G~Gv~lv~~~~~l~~i~~~l~~--~~~~~~vQefI~~--g~DIRv~VIG~~v~--A~~R~s~~~~WktNvgga---~~ 150 (340)
.+|+|+.+++|.++++........ ....+++|+||+. .+++.++..|+++. +.+.+- .+.+++.+ ..
T Consensus 715 ~Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~G~E~~Vd~l~d~g~v~i~~i~e~~----~~~gv~sGds~~~ 790 (1050)
T TIGR01369 715 LGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLEDAVEVDVDAVSDGEEVLIPGIMEHI----EEAGVHSGDSTCV 790 (1050)
T ss_pred CCCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCCCeEEEEEEEEeCCEEEEEEEEEee----cccCCcCCCceEE
Confidence 999999999999999887775432 2334778999984 46888888888874 333321 12334321 22
Q ss_pred eec-CCCh----HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHHH
Q psy10366 151 EQI-PMTD----HYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 151 e~~-~~~e----e~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i~ 221 (340)
.|. .+++ ++++++.+++++++=-+.+.||++.+. |++||+|||...-..+.-+...++.++++.+++.+.
T Consensus 791 ~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~-~~~yvIEvNpR~s~t~p~vs~atGi~l~~~~~~~~l 865 (1050)
T TIGR01369 791 LPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVKD-GEVYVIEVNPRASRTVPFVSKATGVPLIKLATRVML 865 (1050)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEEC-CeEEEEEEeCCCCchHHHHHHHHCCCHHHHHHHHHc
Confidence 222 3444 567788888888743456779999984 568999999751111223456788999998887764
No 51
>PRK06849 hypothetical protein; Provisional
Probab=99.60 E-value=2e-14 Score=142.35 Aligned_cols=165 Identities=12% Similarity=0.117 Sum_probs=117.5
Q ss_pred HHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc--------cc--ccEEEecCCCCcccce
Q psy10366 16 FNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK--------EM--YPVVFKIGHAHSGFGK 85 (340)
Q Consensus 16 le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~--------~~--~PvVvKp~~Gs~G~Gv 85 (340)
|+.......++.+++..|.|| ..+.++++++| +| +|.++..... +. ||+|+||..|++|.|+
T Consensus 97 l~~~~~v~~~~~~~~~~~~DK----~~~~~~~~~~G---ip-vP~t~~v~~~~~l~~~~~~~~~~P~vlKP~~~~~~~~v 168 (389)
T PRK06849 97 LSAYCEVLHFDFELLLLLHNK----WEFAEQARSLG---LS-VPKTYLITDPEAIRNFMFKTPHTPYVLKPIYSRFVRRV 168 (389)
T ss_pred hcCCcEEEcCCHHHHHHhhCH----HHHHHHHHHcC---CC-CCCEEEeCCHHHHHHHhhcCCCCcEEEEeCcccCCCeE
Confidence 433334456899999999999 55566789999 68 4555543221 11 7999999999999999
Q ss_pred EEecChhhHHHHHHHHHhhCceEEeecCCC-CCCcEEEEEECCeEEEE-EEEecCCCcccccCCc-eeeecCCChHHHHH
Q psy10366 86 VRVESNQDFQDMAGVVAVANTYCTTEPYID-SKFDVHVQKIGSNYKAF-QRKSISGNWKTNTGSA-MLEQIPMTDHYKLW 162 (340)
Q Consensus 86 ~lv~~~~~l~~i~~~l~~~~~~~~vQefI~-~g~DIRv~VIG~~v~A~-~R~s~~~~WktNvgga-~~e~~~~~ee~~~~ 162 (340)
.++.+.+.+..+. ......+++||||+ ..+.+.+++.+|++.+. .++ ..|..|.+.+ ..+++ .+++++++
T Consensus 169 ~~~~~~~~l~~~~---~~~~~~~ivQe~I~G~e~~~~~~~~~G~v~~~~~~~---~~~~~~~~~~~~~~~~-~~~~l~~~ 241 (389)
T PRK06849 169 DLLPKEAALKELP---ISKDNPWVMQEFIQGKEYCSYSIVRSGELRAHSCYK---PEYCAGSGAQIAFQPI-NHPRIEEF 241 (389)
T ss_pred EEecCHHHhcccc---cCCCCCeEEEEEecCCeEEEEEEEECCEEEEEEEee---ccccCCCCceeEeEEC-CcHHHHHH
Confidence 9998855433211 11123356899999 46788999999998653 222 2355444322 23444 46889999
Q ss_pred HHHHHHHhCCCc-EEEEeEEEcCCCCeEEEeecCC
Q psy10366 163 IDEVAELFGGLD-ICALEIIVGKDGKEHIIEVNDS 196 (340)
Q Consensus 163 a~~aa~a~~Gld-iaGVDll~~~dG~~~VlEVN~s 196 (340)
+.++++++ |+. ++++|++.+++|++|++|+|.-
T Consensus 242 ~~~~~~~l-~~~G~~~~df~~~~~g~~~~iEiNpR 275 (389)
T PRK06849 242 VTHFVKEL-NYTGQISFDFIETENGDAYPIECNPR 275 (389)
T ss_pred HHHHHHhc-CceeEEEEEEEECCCCCEEEEEecCC
Confidence 99999998 544 8999999998999999999975
No 52
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.58 E-value=6.9e-14 Score=128.14 Aligned_cols=152 Identities=14% Similarity=0.202 Sum_probs=106.9
Q ss_pred HHHHcCCCCCCcccccccCCCc-----------cc-ccEEEecCCCCcccceEEecChhhHHHHHHHHHhhCceEEeecC
Q psy10366 46 LQRKLGKENFPLIDITYYPNFK-----------EM-YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPY 113 (340)
Q Consensus 46 ll~~~G~~~~P~~~~t~~~~~~-----------~~-~PvVvKp~~Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQef 113 (340)
|++.+| ||+++..++.... .+ ||+||||..+..+.|+.+++|.++|+..+.....++..+++|||
T Consensus 1 l~~~~g---I~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~~~~~vlVEef 77 (203)
T PF07478_consen 1 LLKSAG---IPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFKYDDDVLVEEF 77 (203)
T ss_dssp HHHHTT----BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTTTHSEEEEEE-
T ss_pred ChhhcC---CCCCCEEEEecccccchhHHHHHhhcCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhhhcceEEEEee
Confidence 477899 6965554442211 13 99999999999999999999999999888876656677889999
Q ss_pred CCCCCcEEEEEEC---CeEEEEEEEecCCCcc---ccc---CCceee--ecCC----ChHHHHHHHHHHHHhCCCcEEEE
Q psy10366 114 IDSKFDVHVQKIG---SNYKAFQRKSISGNWK---TNT---GSAMLE--QIPM----TDHYKLWIDEVAELFGGLDICAL 178 (340)
Q Consensus 114 I~~g~DIRv~VIG---~~v~A~~R~s~~~~Wk---tNv---gga~~e--~~~~----~ee~~~~a~~aa~a~~GldiaGV 178 (340)
| .|+++.|-|+| .++........+++|- +-. ++.... +..+ .++++++|.+|.++++.-+|+=|
T Consensus 78 I-~G~E~tv~vl~~~~~~~~~~~ei~~~~~~~d~~~Ky~~~~~~~~~~~pa~l~~~~~~~i~~~a~~a~~~lg~~~~~Ri 156 (203)
T PF07478_consen 78 I-SGREFTVGVLGNGEPRVLPPVEIVFPSEFYDYEAKYQPADSETEYIIPADLSEELQEKIKEIAKKAFKALGCRGYARI 156 (203)
T ss_dssp --SSEEEEEEEEESSSTEEEEEEEEEESSSEEEHHHHHSGCCSCEEEESS-SS-HHHHHHHHHHHHHHHHHTTTCSEEEE
T ss_pred e-cccceEEEEEecCCcccCceEEEEcCCCceehhheeccCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHcCCCceeE
Confidence 9 89999999998 4454444332234332 111 111111 2223 35678999999999988899999
Q ss_pred eEEEcCCCCeEEEeecCCccccccc
Q psy10366 179 EIIVGKDGKEHIIEVNDSALSLMGE 203 (340)
Q Consensus 179 Dll~~~dG~~~VlEVN~s~~P~~~g 203 (340)
|+..+++|..|++|||.. ||+..
T Consensus 157 D~rv~~~g~~~~lEiNt~--PGlt~ 179 (203)
T PF07478_consen 157 DFRVDEDGKPYFLEINTI--PGLTP 179 (203)
T ss_dssp EEEEETTTEEEEEEEESS---G-ST
T ss_pred EEEeccCCceEEEeccCc--ccccC
Confidence 999999999999999966 99864
No 53
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.58 E-value=1.1e-13 Score=153.85 Aligned_cols=200 Identities=21% Similarity=0.232 Sum_probs=137.3
Q ss_pred HHHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccc-c-CCCc-------cc-ccEEEecCC
Q psy10366 10 KNLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITY-Y-PNFK-------EM-YPVVFKIGH 78 (340)
Q Consensus 10 r~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~-~-~~~~-------~~-~PvVvKp~~ 78 (340)
-.+...++..|++++ ++++++..|+|| ..+.++++++| +|++|.+. . .+.. ++ ||+||||..
T Consensus 93 ~~~a~~~e~~Gi~fiGps~eai~~~~DK----~~~r~~l~~~G---VPv~P~~~~~v~s~eea~~~a~~iGyPvVVKP~~ 165 (1146)
T PRK12999 93 PEFARACAEAGITFIGPTAEVLRLLGDK----VAARNAAIKAG---VPVIPGSEGPIDDIEEALEFAEEIGYPIMLKASA 165 (1146)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHhCCH----HHHHHHHHHCC---CCCCCCcccCCCCHHHHHHHHHHhCCCEEEEECC
Confidence 356778899999865 789999999999 44455688999 68666554 2 2211 22 999999999
Q ss_pred CCcccceEEecChhhHHHHHHHHHh------hCceEEeecCCCCCCcEEEEEECC---eEEEE-EEEecCCCcccccCCc
Q psy10366 79 AHSGFGKVRVESNQDFQDMAGVVAV------ANTYCTTEPYIDSKFDVHVQKIGS---NYKAF-QRKSISGNWKTNTGSA 148 (340)
Q Consensus 79 Gs~G~Gv~lv~~~~~l~~i~~~l~~------~~~~~~vQefI~~g~DIRv~VIG~---~v~A~-~R~s~~~~WktNvgga 148 (340)
|++|+|+.++++.++|....+.... ....+++|+||+..+.+.|+++++ +++.+ .|. ..-++-+...-
T Consensus 166 GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~~~ieVqvl~D~~G~vv~l~erd--csvqrr~qk~i 243 (1146)
T PRK12999 166 GGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERD--CSVQRRHQKVV 243 (1146)
T ss_pred CCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCeEEEEEEEEECCCCEEEEEccc--cceeecCccEE
Confidence 9999999999999998877664321 123467899999777899988864 45543 232 11122221100
Q ss_pred eeee-cCCC----hHHHHHHHHHHHHhCCC-cEEEEeEEEcCCCCeEEEeecCCccccccc--chhHHHHHHHHHHHHHH
Q psy10366 149 MLEQ-IPMT----DHYKLWIDEVAELFGGL-DICALEIIVGKDGKEHIIEVNDSALSLMGE--TQEEDRRFIVDLVIQKM 220 (340)
Q Consensus 149 ~~e~-~~~~----ee~~~~a~~aa~a~~Gl-diaGVDll~~~dG~~~VlEVN~s~~P~~~g--~~~~~~~~IA~~vi~~i 220 (340)
...+ ..++ +++.+++.++++++ |+ ..+.||++.+++|++|++|||.. ...+. .+..++.|+.+..+...
T Consensus 244 e~aP~~~L~~~~~~~l~~~A~kl~~al-gy~G~gtVEflvd~dg~~yfIEINpR--lqveh~vte~~tGvDlv~~~iriA 320 (1146)
T PRK12999 244 EIAPAPGLSEELRERICEAAVKLARAV-GYVNAGTVEFLVDADGNFYFIEVNPR--IQVEHTVTEEVTGIDIVQSQILIA 320 (1146)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHc-CCCceEEEEEEEECCCCEEEEEEECC--CCCcchHHHHHhCcCHHHHHHHHH
Confidence 0001 1233 45577888888888 44 34559999998888999999965 44333 24678999988888655
Q ss_pred H
Q psy10366 221 Q 221 (340)
Q Consensus 221 ~ 221 (340)
.
T Consensus 321 ~ 321 (1146)
T PRK12999 321 E 321 (1146)
T ss_pred C
Confidence 3
No 54
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.57 E-value=1e-13 Score=151.07 Aligned_cols=195 Identities=17% Similarity=0.161 Sum_probs=135.6
Q ss_pred HHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCC-c-------cc-ccEEEecCCCCcc
Q psy10366 12 LLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF-K-------EM-YPVVFKIGHAHSG 82 (340)
Q Consensus 12 vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~-~-------~~-~PvVvKp~~Gs~G 82 (340)
+.+..+..|+|. |+++++.+|+|| ..+-++|+++| +|. |.++.... . .+ ||+||||..|++|
T Consensus 85 aa~lae~lglpg-~~~ea~~~~~dK----~~~r~~L~~~G---Ip~-P~~~~v~~~~e~~~~~~~~~~PvVVKP~~g~gS 155 (887)
T PRK02186 85 ASEVARRLGLPA-ANTEAIRTCRDK----KRLARTLRDHG---IDV-PRTHALALRAVALDALDGLTYPVVVKPRMGSGS 155 (887)
T ss_pred HHHHHHHhCcCC-CCHHHHHHhcCH----HHHHHHHHHcC---CCC-CCEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence 445568889996 789999999999 45555688999 684 44443221 1 23 9999999999999
Q ss_pred cceEEecChhhHHHHHHHHHh-hCceEEeecCCC-CCCcEEEEEECCeE--EEEEEEecCCCccccc-CCceeeecCCC-
Q psy10366 83 FGKVRVESNQDFQDMAGVVAV-ANTYCTTEPYID-SKFDVHVQKIGSNY--KAFQRKSISGNWKTNT-GSAMLEQIPMT- 156 (340)
Q Consensus 83 ~Gv~lv~~~~~l~~i~~~l~~-~~~~~~vQefI~-~g~DIRv~VIG~~v--~A~~R~s~~~~WktNv-gga~~e~~~~~- 156 (340)
+||.+++|.+++....+.+.. ....+++||||+ .-+.+.+++.++++ .++.++..... .+. ..+...|..++
T Consensus 156 ~GV~~v~~~~el~~a~~~~~~~~~~~~lvEEfI~G~E~sVe~i~~~g~~~i~~i~~k~~~~~--~~~ve~g~~~P~~l~~ 233 (887)
T PRK02186 156 VGVRLCASVAEAAAHCAALRRAGTRAALVQAYVEGDEYSVETLTVARGHQVLGITRKHLGPP--PHFVEIGHDFPAPLSA 233 (887)
T ss_pred CCeEEECCHHHHHHHHHHHHhcCCCcEEEeecccCCcEEEEEEEECCcEEEEEEEeeecCCC--CCeEEeccccCCCCCH
Confidence 999999999998877665432 234567899999 57788888887764 34555422111 122 12222334444
Q ss_pred ---hHHHHHHHHHHHHhCCC--cEEEEeEEEcCCCCeEEEeecCCcccccc----cchhHHHHHHHHHHHHHHH
Q psy10366 157 ---DHYKLWIDEVAELFGGL--DICALEIIVGKDGKEHIIEVNDSALSLMG----ETQEEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 157 ---ee~~~~a~~aa~a~~Gl--diaGVDll~~~dG~~~VlEVN~s~~P~~~----g~~~~~~~~IA~~vi~~i~ 221 (340)
+++.+++.++.+++ |+ +++.+|++.+++| ++|+|||.. ++-. -++..++.++.+.+++...
T Consensus 234 ~~~~~l~~~~~~~l~aL-G~~~G~~hvE~~~t~~g-~~liEIn~R--~~G~~i~~li~~a~Gvd~~~~~i~~~l 303 (887)
T PRK02186 234 PQRERIVRTVLRALDAV-GYAFGPAHTELRVRGDT-VVIIEINPR--LAGGMIPVLLEEAFGVDLLDHVIDLHL 303 (887)
T ss_pred HHHHHHHHHHHHHHHHc-CCCcCceEEEEEEECCC-EEEEEECCC--CCCccHHHHHHHHHCcCHHHHHHHHhC
Confidence 35677788888888 65 6789999998765 899999975 3322 1455778888888887654
No 55
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.54 E-value=2.9e-13 Score=135.17 Aligned_cols=177 Identities=17% Similarity=0.268 Sum_probs=114.6
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc-cc-EEEecCCCC
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM-YP-VVFKIGHAH 80 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~P-vVvKp~~Gs 80 (340)
.+...|+..|+|++ ++.+++.+|+|| ..+.++|+++| +|.+++..+.+.. ++ || +|+||..|+
T Consensus 79 ~~~~~l~~~gi~~~g~~~~~~~~~~dK----~~~k~~l~~~g---Ip~p~~~~~~~~~~~~~~~~~~g~P~~VvKp~~~~ 151 (423)
T TIGR00877 79 GLVDALEEAGIPVFGPTKEAAQLEGSK----AFAKDFMKRYG---IPTAEYEVFTDPEEALSYIQEKGAPAIVVKADGLA 151 (423)
T ss_pred HHHHHHHHCCCeEECCCHHHHHHHCCH----HHHHHHHHHCC---CCCCCeEEECCHHHHHHHHHhcCCCeEEEEECCCC
Confidence 45678999999976 788999999999 44455689999 6843332222221 23 89 999999999
Q ss_pred cccceEEecChhhHHHHHHHHHhh-----CceEEeecCCCCCCcEEEEEE--CCeEEE--EEEE---ecCCCcccccCC-
Q psy10366 81 SGFGKVRVESNQDFQDMAGVVAVA-----NTYCTTEPYIDSKFDVHVQKI--GSNYKA--FQRK---SISGNWKTNTGS- 147 (340)
Q Consensus 81 ~G~Gv~lv~~~~~l~~i~~~l~~~-----~~~~~vQefI~~g~DIRv~VI--G~~v~A--~~R~---s~~~~WktNvgg- 147 (340)
+|+|+.+++|.+++......+... ...+++||||+ |..+-|.++ |+.+.. ..|. .-.++...|.++
T Consensus 152 gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~-G~E~sv~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~ 230 (423)
T TIGR00877 152 AGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLD-GEEVSLLAFVDGKTVIPMPPAQDHKRALEGDKGPNTGGM 230 (423)
T ss_pred CCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECcc-CceEEEEEEEcCCeEEeceeeeeeeecccCCCCCCCCCC
Confidence 999999999999887766544321 23567899998 456666555 555532 2221 112334445442
Q ss_pred ceeeec-CCChH-----HHHHHHHHHHHhC--C---CcEEEEeEEEcCCCCeEEEeecCC
Q psy10366 148 AMLEQI-PMTDH-----YKLWIDEVAELFG--G---LDICALEIIVGKDGKEHIIEVNDS 196 (340)
Q Consensus 148 a~~e~~-~~~ee-----~~~~a~~aa~a~~--G---ldiaGVDll~~~dG~~~VlEVN~s 196 (340)
+...+. .++++ .++++.++.+++. | -.++.+|++.+++| ++|+|+|.-
T Consensus 231 ~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~~g-~~viEin~R 289 (423)
T TIGR00877 231 GAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTKEG-PKVLEFNCR 289 (423)
T ss_pred ceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEECCC-cEEEEEEcc
Confidence 223222 23332 2334444444442 2 25678999999887 799999965
No 56
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.53 E-value=2.9e-13 Score=128.51 Aligned_cols=190 Identities=22% Similarity=0.275 Sum_probs=122.6
Q ss_pred HhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccc-cCCCc---cc---cc-EEEecCCCCcccceEEe
Q psy10366 17 NIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITY-YPNFK---EM---YP-VVFKIGHAHSGFGKVRV 88 (340)
Q Consensus 17 e~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~-~~~~~---~~---~P-vVvKp~~Gs~G~Gv~lv 88 (340)
+..|+|.+|+ .+.|| ..+.+.|.+... -=|..|.|. +...+ +| |+ |.|||..|++|+||+++
T Consensus 5 ~~~~i~~~n~-----~~~~K----w~v~~~L~~~~~-l~~~LP~T~~~~~~~~l~~~L~~y~~vylKP~~Gs~G~gI~ri 74 (262)
T PF14398_consen 5 KQKGIPFFNP-----GFFDK----WEVYKALSRDPE-LRPYLPETELLTSFEDLREMLNKYKSVYLKPDNGSKGKGIIRI 74 (262)
T ss_pred hcCCCEEeCC-----CCCCH----HHHHHHHHcCCc-chhhCCCceEcCCHHHHHHHHHHCCEEEEEeCCCCCCccEEEE
Confidence 5789999998 46899 344444655431 012234443 22222 33 54 99999999999999986
Q ss_pred cChh-------------------hHHHHHHHHHh---hCceEEeecCCCC----C--CcEEEEEE-C--Ce--EE-EEEE
Q psy10366 89 ESNQ-------------------DFQDMAGVVAV---ANTYCTTEPYIDS----K--FDVHVQKI-G--SN--YK-AFQR 134 (340)
Q Consensus 89 ~~~~-------------------~l~~i~~~l~~---~~~~~~vQefI~~----g--~DIRv~VI-G--~~--v~-A~~R 134 (340)
+-.+ .++.+...+.. ...|+ +|+.|+- | +|+||+|- + |+ +. .+.|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yI-iQq~I~l~~~~gr~fD~RvlvqK~~~G~W~vtg~~~R 153 (262)
T PF14398_consen 75 EKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYI-IQQGIPLATYDGRPFDFRVLVQKNGSGKWQVTGIVAR 153 (262)
T ss_pred EEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEE-EeCCccccccCCCeEEEEEEEEECCCCCEEEEEEEEE
Confidence 5322 12233332221 23554 7999992 3 69999999 2 22 43 4678
Q ss_pred EecCCCcccccC-Cceeeec-----------CCChHHHHHHHHHHH----HhCC-CcEEEEeEEEcCCCCeEEEeecCCc
Q psy10366 135 KSISGNWKTNTG-SAMLEQI-----------PMTDHYKLWIDEVAE----LFGG-LDICALEIIVGKDGKEHIIEVNDSA 197 (340)
Q Consensus 135 ~s~~~~WktNvg-ga~~e~~-----------~~~ee~~~~a~~aa~----a~~G-ldiaGVDll~~~dG~~~VlEVN~s~ 197 (340)
.+..+++-||+. ||...++ .+.+++++++..+|+ .+++ +.-.|+|+..|++|+..|+|||+-
T Consensus 154 va~~~~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~~g~iWliEvN~k- 232 (262)
T PF14398_consen 154 VAKPGSIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDKNGKIWLIEVNSK- 232 (262)
T ss_pred EcCCCCceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcCCCCEEEEEEeCC-
Confidence 888899999995 5554443 133455566666655 4545 788999999999999999999976
Q ss_pred ccccccchhH----HHHHHHHHHHHH
Q psy10366 198 LSLMGETQEE----DRRFIVDLVIQK 219 (340)
Q Consensus 198 ~P~~~g~~~~----~~~~IA~~vi~~ 219 (340)
|+-..+... ....+....++|
T Consensus 233 -P~~~~~~~~~~~~~~~~~~~~pl~Y 257 (262)
T PF14398_consen 233 -PGKFDFRDIGDKELIRQSYRRPLEY 257 (262)
T ss_pred -CCcchhhcccchHHHHHHHHHHHHH
Confidence 887665553 344444444444
No 57
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.52 E-value=7.2e-13 Score=133.79 Aligned_cols=205 Identities=15% Similarity=0.178 Sum_probs=130.4
Q ss_pred HHHHHHHHhCCCcccC-ChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc-ccEEEecCCCC
Q psy10366 10 KNLLLGFNIGGIPSIN-TLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM-YPVVFKIGHAH 80 (340)
Q Consensus 10 r~vl~~le~~GvpviN-s~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~PvVvKp~~Gs 80 (340)
..+...|+..|+|++- +..+..++.|| ..+-++++++| ||.+++..+.+.. ++ ||+||||..++
T Consensus 82 ~glad~~~~~Gip~~Gp~~~aa~le~dK----~~~K~~l~~~g---Ipt~~~~~~~~~~ea~~~~~~~~~PvVVKp~~~~ 154 (426)
T PRK13789 82 AGFADWAAELGIPCFGPDSYCAQVEGSK----HFAKSLMKEAK---IPTASYKTFTEYSSSLSYLESEMLPIVIKADGLA 154 (426)
T ss_pred HHHHHHHHHcCCCcCCCHHHHHHHHcCH----HHHHHHHHHcC---CCCCCeEeeCCHHHHHHHHHhcCCCEEEEeCCCC
Confidence 3567788999999873 45688899999 44445689999 6854433333221 23 89999999999
Q ss_pred cccceEEecChhhHHHHHHHHHhh------CceEEeecCCCCCCcEEEEEE--CCeEEEE--EE---EecCCCcccccCC
Q psy10366 81 SGFGKVRVESNQDFQDMAGVVAVA------NTYCTTEPYIDSKFDVHVQKI--GSNYKAF--QR---KSISGNWKTNTGS 147 (340)
Q Consensus 81 ~G~Gv~lv~~~~~l~~i~~~l~~~------~~~~~vQefI~~g~DIRv~VI--G~~v~A~--~R---~s~~~~WktNvgg 147 (340)
.|+||.+++|.++++.....+... ...+++||||+. +-+=|+++ |+.+..+ .+ +.-++|-.-|+++
T Consensus 155 ~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~G-~E~Sv~~~~dg~~~~~lp~~~d~k~~~d~d~g~~tgg 233 (426)
T PRK13789 155 AGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEG-QEASIFAISDGDSYFLLPAAQDHKRAFDGDQGPNTGG 233 (426)
T ss_pred CCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcCC-eEEEEEEEECCCEEEEccceEecccccCCCCCCCCCC
Confidence 999999999999888776654311 235789999983 44444444 4444332 22 2235666778864
Q ss_pred -ceeeecC-CChHHHHHHH-----HHHHHh--CCC---cEEEEeEEEcCCCCeEEEeecCCcccccccchhHH---HHHH
Q psy10366 148 -AMLEQIP-MTDHYKLWID-----EVAELF--GGL---DICALEIIVGKDGKEHIIEVNDSALSLMGETQEED---RRFI 212 (340)
Q Consensus 148 -a~~e~~~-~~ee~~~~a~-----~aa~a~--~Gl---diaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~---~~~I 212 (340)
+...|.+ ++++..+.+. ++.+++ .|+ +++.+|++.+++|+.+|+|+|.. ||-...+... ..++
T Consensus 234 mg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~~g~~~vlE~n~R--~Gdpe~~~ll~~l~~dl 311 (426)
T PRK13789 234 MGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEGEPKVVEFNCR--FGDPETQCVLAMLDGDL 311 (426)
T ss_pred ceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcCCCCEEEEEEecC--CCCcHhhhhhccCCCCH
Confidence 4444554 4655433332 223322 143 45778999999988899999966 6532222211 2466
Q ss_pred HHHHHHHHHhhc
Q psy10366 213 VDLVIQKMQVSV 224 (340)
Q Consensus 213 A~~vi~~i~~~~ 224 (340)
.+.++.-....+
T Consensus 312 ~~~~~~~~~g~l 323 (426)
T PRK13789 312 LELLYAASTGKI 323 (426)
T ss_pred HHHHHHHHcCCC
Confidence 666665554433
No 58
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.51 E-value=1.9e-14 Score=126.73 Aligned_cols=148 Identities=18% Similarity=0.267 Sum_probs=73.0
Q ss_pred cCCchHHHHHHHHHHHHcCCCCCCcccccccCC-Cccc-ccEEEecCCCCcccceEEecChhhHHHHHHHHHhhCceEEe
Q psy10366 33 FQDKPWVFAHLLQLQRKLGKENFPLIDITYYPN-FKEM-YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTT 110 (340)
Q Consensus 33 ~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~-~~~~-~PvVvKp~~Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~v 110 (340)
|.||..+| +.|+++| || +|.++... .... +|.|+||..|.+|.|+..+++.+++........ ++
T Consensus 1 ~~dK~~~~----~~L~~~g---i~-~P~~~~~~~~~~~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~~~------i~ 66 (161)
T PF02655_consen 1 CSDKLKTY----KFLKELG---IP-VPTTLRDSEPEPIDGPWVIKPRDGAGGEGIRIVDSEDELEEFLNKLR------IV 66 (161)
T ss_dssp -TSHHHHH----HHHTTT----S---------EESS--SSSEEEEESS-------B--SS--TTE-------------EE
T ss_pred CCCHHHHH----HHHHccC---CC-CCCccccccccccCCcEEEEeCCCCCCCCeEEECCchhhccccccce------EE
Confidence 78994444 4488999 67 55333221 1122 899999999999999999999987766443222 57
Q ss_pred ecCCCCCCcEEEEEE--CCeE--EEEEEEecCCCcccccCCceeee--cCCChHHHHHHHHHHHHh-CCCcEEEEeEEEc
Q psy10366 111 EPYIDSKFDVHVQKI--GSNY--KAFQRKSISGNWKTNTGSAMLEQ--IPMTDHYKLWIDEVAELF-GGLDICALEIIVG 183 (340)
Q Consensus 111 QefI~~g~DIRv~VI--G~~v--~A~~R~s~~~~WktNvgga~~e~--~~~~ee~~~~a~~aa~a~-~GldiaGVDll~~ 183 (340)
||||+ |..+-+.++ ++++ .++-|.-...++..-.-.|..-+ .+..+++.+++.++++++ +=..++|||+|.+
T Consensus 67 Qe~i~-G~~~Sv~~l~~~~~~~~l~~~rq~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~i~~~l~gl~G~~giD~I~~ 145 (161)
T PF02655_consen 67 QEFIE-GEPYSVSFLASGGGARLLGVNRQLIGNDDGRFRYCGGIVPADTPLKEEIIELARRIAEALPGLRGYVGIDFILD 145 (161)
T ss_dssp EE----SEEEEEEEEE-SSSEEEEEEEEEEEET----TEEEEEEES----HHHHHHHHHHHHHTTSTT--EEEEEEEEES
T ss_pred eeeeC-CEEeEEEEEEeCCceEEEEechHhhccccceeeecccccccCCchHHHHHHHHHHHHHHcCCCeeeEeEEEEEe
Confidence 99998 444444444 3333 45666533322222111111112 234788899999999988 7778999999998
Q ss_pred CCCCeEEEeecCC
Q psy10366 184 KDGKEHIIEVNDS 196 (340)
Q Consensus 184 ~dG~~~VlEVN~s 196 (340)
+ ++.||+|||.-
T Consensus 146 ~-~~~~viEINPR 157 (161)
T PF02655_consen 146 D-GGPYVIEINPR 157 (161)
T ss_dssp S--SEEEEEEESS
T ss_pred C-CcEEEEEEcCC
Confidence 6 56899999954
No 59
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.50 E-value=6.1e-13 Score=147.58 Aligned_cols=197 Identities=15% Similarity=0.235 Sum_probs=133.9
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc-ccEEEecCCCCc
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM-YPVVFKIGHAHS 81 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~PvVvKp~~Gs~ 81 (340)
++...|+..|++++ +++++|..|.|| ..+.++|+++| +|.++.....+.+ ++ ||+||||..|.+
T Consensus 645 ~la~~le~~Gi~ilG~s~e~i~~~~DK----~~f~~ll~~~G---Ip~P~~~~~~s~ee~~~~~~~igyPvVVKP~~~~G 717 (1068)
T PRK12815 645 NLAKGLEEAGLTILGTSPDTIDRLEDR----DRFYQLLDELG---LPHVPGLTATDEEEAFAFAKRIGYPVLIRPSYVIG 717 (1068)
T ss_pred HHHHHHHHCCCeEECCcHHHHHHHcCH----HHHHHHHHHcC---cCCCCeEEeCCHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 45667899999976 779999999999 44555689999 6844433222222 23 999999999999
Q ss_pred ccceEEecChhhHHHHHHHHHhhCceEEeecCCC-CCCcEEEEEECCeEE--EEEEEecCCCcccccCC---c-eeeecC
Q psy10366 82 GFGKVRVESNQDFQDMAGVVAVANTYCTTEPYID-SKFDVHVQKIGSNYK--AFQRKSISGNWKTNTGS---A-MLEQIP 154 (340)
Q Consensus 82 G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~-~g~DIRv~VIG~~v~--A~~R~s~~~~WktNvgg---a-~~e~~~ 154 (340)
|+|+.+++|.++++............+++|+||+ ..+++-++.-|+.+. +++.... +..+++ . ...+..
T Consensus 718 g~gv~iv~~~eeL~~~l~~~~s~~~~vlIeefI~G~E~~Vd~i~dg~~v~i~~i~e~~e----~~gv~sGds~~v~pp~~ 793 (1068)
T PRK12815 718 GQGMAVVYDEPALEAYLAENASQLYPILIDQFIDGKEYEVDAISDGEDVTIPGIIEHIE----QAGVHSGDSIAVLPPQS 793 (1068)
T ss_pred CCCEEEECCHHHHHHHHHHhhcCCCCEEEEEeecCceEEEEEEEcCCceEEeeEEEEee----ccCCcCCCeeEEECCCC
Confidence 9999999999999887765522345578999996 345666655455542 3333211 111221 1 122334
Q ss_pred CC----hHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCccccc--ccchhHHHHHHHHHHHHHHH
Q psy10366 155 MT----DHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLM--GETQEEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 155 ~~----ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~--~g~~~~~~~~IA~~vi~~i~ 221 (340)
++ +++++++.+++++++--+++.||++.+. |++||+|||.. ++- .-+...++.+++++.++.+.
T Consensus 794 l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~-~~~yviEiNpR--~s~t~~~~skatGv~l~~~~~~~~l 863 (1068)
T PRK12815 794 LSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLAN-DEIYVLEVNPR--ASRTVPFVSKATGVPLAKLATKVLL 863 (1068)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEEC-CcEEEEEEeCC--CCccHHHHHHHHCCCHHHHHHHHHc
Confidence 44 4567788888888864567889999975 46899999965 321 11345778999998887664
No 60
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.50 E-value=1.6e-12 Score=132.83 Aligned_cols=172 Identities=12% Similarity=0.105 Sum_probs=117.5
Q ss_pred HHHHHHhCCCcc-cCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccC--CC-------cc--c-ccEEEecCC
Q psy10366 12 LLLGFNIGGIPS-INTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYP--NF-------KE--M-YPVVFKIGH 78 (340)
Q Consensus 12 vl~~le~~Gvpv-iNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~--~~-------~~--~-~PvVvKp~~ 78 (340)
+-..||..|+|+ .-++.++.+|.|| ..+.++++++| +|+++..+.. .. ++ + ||+||||..
T Consensus 118 iQ~lLE~lGIpy~gP~a~asai~mDK----~~tK~l~~~aG---IPtpp~~~~~~~~~eel~~~~~~~~IGyPvVVKP~~ 190 (493)
T PRK06524 118 TEALARQAGLEVMHPPAELRHRLDSK----IVTTRLANEAG---VPSVPHVLGRVDSYDELSALAHGAGLGDDLVVQTPY 190 (493)
T ss_pred HHHHHHHCCCeEECcCHHHHHHhCCH----HHHHHHHHHcC---CCCCCcccccCCCHHHHHHHHHhccCCCcEEEEECC
Confidence 455689999999 8999999999999 45555688999 6865544321 11 12 5 899999999
Q ss_pred CCcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEE--EEECC-eEEEE-EEEe--------cCCCcccccC
Q psy10366 79 AHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHV--QKIGS-NYKAF-QRKS--------ISGNWKTNTG 146 (340)
Q Consensus 79 Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv--~VIG~-~v~A~-~R~s--------~~~~WktNvg 146 (340)
|+.|+|+.+|++.++++.....+.. ...+++|+||+ |+-+=| ++.++ .+.+. .+.. -.+.|-.+
T Consensus 191 GGSS~GV~~Vkn~eELe~a~~~~~~-~~~viVEe~I~-GrEitVev~vd~dG~Vv~~~~~e~vg~~Ei~~yr~G~~~~-- 266 (493)
T PRK06524 191 GDSGSTTFFVRGQRDWDKYAGGIVG-QPEIKVMKRIR-NVEVCIEACVTRHGTVIGPAMTSLVGYPELTPYRGGWCGN-- 266 (493)
T ss_pred CCCCcCEEEeCCHHHHHHHHHHhcC-CCCEEEEeccC-cEEEEEEEEEeCCCCEEeccccccccceEEEEccCCeEEE--
Confidence 9999999999999998887665432 24456899997 444333 43332 34321 1110 01223221
Q ss_pred CceeeecCCCh----HHHHHHHHHHHHh---CCCcEEEEeEEEcC-CCCeEEEeecCC
Q psy10366 147 SAMLEQIPMTD----HYKLWIDEVAELF---GGLDICALEIIVGK-DGKEHIIEVNDS 196 (340)
Q Consensus 147 ga~~e~~~~~e----e~~~~a~~aa~a~---~GldiaGVDll~~~-dG~~~VlEVN~s 196 (340)
..-|..+++ +.+++|.++.+++ +--++++||++.++ +|++|++|||.-
T Consensus 267 --~i~PA~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEINPR 322 (493)
T PRK06524 267 --DIWPGALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVNPR 322 (493)
T ss_pred --EEccCCCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEeCC
Confidence 122344555 7788888888887 34678899999985 588999999953
No 61
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.49 E-value=1.2e-12 Score=132.55 Aligned_cols=202 Identities=14% Similarity=0.118 Sum_probs=125.3
Q ss_pred HHHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCccccccc-C-CCc-------cc-ccEEEecCC
Q psy10366 10 KNLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYY-P-NFK-------EM-YPVVFKIGH 78 (340)
Q Consensus 10 r~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~-~-~~~-------~~-~PvVvKp~~ 78 (340)
.+++..|+..|+|++ .|.+++.+|.||.|+.. +++++| || +|.+|. . +.. ++ ||+||||..
T Consensus 79 ~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~----~l~~~g---Ip-tp~~~~~~~~~~e~~~~~~~~~~PvVVKP~~ 150 (435)
T PRK06395 79 TPLVNNLLKRGIKVASPTMEAAMIETSKMFMRY----LMERHN---IP-GNINFNACFSEKDAARDYITSMKDVAVKPIG 150 (435)
T ss_pred HHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHH----HHHHCC---cC-CCcccceeCChHHHHHHHHhhCCCEEEEeCC
Confidence 356677889999997 99999999999954444 478999 68 443342 1 211 22 899999999
Q ss_pred CCcccceEEecCh-hhHHHHHHHHH-h--hCceEEeecCCC-CCCcEEEEEECCeEEE--EE---EEecCCCcccccC--
Q psy10366 79 AHSGFGKVRVESN-QDFQDMAGVVA-V--ANTYCTTEPYID-SKFDVHVQKIGSNYKA--FQ---RKSISGNWKTNTG-- 146 (340)
Q Consensus 79 Gs~G~Gv~lv~~~-~~l~~i~~~l~-~--~~~~~~vQefI~-~g~DIRv~VIG~~v~A--~~---R~s~~~~WktNvg-- 146 (340)
+++|+||.++.+. ++++....... . ....+++||||+ +-+.+-+++-|+.+.. .. -+.-.+|+--|+|
T Consensus 151 ~sggkGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl~G~E~Svd~~~dg~~~~~l~~~~d~~r~~~~d~gp~tGgm 230 (435)
T PRK06395 151 LTGGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMTGEEFSLQAFSDGKHLSFMPIVQDYKRAYEGDHGPNTGGM 230 (435)
T ss_pred CCCCCCeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeecCCceEEEEEEEcCCeEEEecccceeeecccCCCCCccCCC
Confidence 9999999999542 22222222211 1 123467899998 5678888876766632 22 1223677778886
Q ss_pred Ccee---eec-CCChH----HHHHHHHHHHHhC--C---CcEEEEeEEEcCCCCeEEEeecCCcccc---cccchhHHHH
Q psy10366 147 SAML---EQI-PMTDH----YKLWIDEVAELFG--G---LDICALEIIVGKDGKEHIIEVNDSALSL---MGETQEEDRR 210 (340)
Q Consensus 147 ga~~---e~~-~~~ee----~~~~a~~aa~a~~--G---ldiaGVDll~~~dG~~~VlEVN~s~~P~---~~g~~~~~~~ 210 (340)
|+.. .+. .++++ .++++.+++++++ + -.+..++++.+++| .+|+|+|.. ++ .+-+-.--..
T Consensus 231 G~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~~g-p~ViE~n~R--~gdpe~~~il~~l~~ 307 (435)
T PRK06395 231 GSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDTPNG-VKVIEINAR--FADPEGINVLYLLKS 307 (435)
T ss_pred ccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEeCCC-cEEEEEeCC--CCCccHHhhhhhccc
Confidence 3222 011 14443 3556666667663 1 13446899998787 699999965 33 2222222235
Q ss_pred HHHHHHHHHHHh
Q psy10366 211 FIVDLVIQKMQV 222 (340)
Q Consensus 211 ~IA~~vi~~i~~ 222 (340)
|+++.+++-...
T Consensus 308 d~~~~~~~~~~g 319 (435)
T PRK06395 308 DFVETLHQIYSG 319 (435)
T ss_pred CHHHHHHHHhcC
Confidence 555555554443
No 62
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.49 E-value=8.1e-13 Score=147.77 Aligned_cols=203 Identities=18% Similarity=0.183 Sum_probs=132.9
Q ss_pred HHHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCC-c-------cc-ccEEEecCCC
Q psy10366 10 KNLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF-K-------EM-YPVVFKIGHA 79 (340)
Q Consensus 10 r~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~-~-------~~-~PvVvKp~~G 79 (340)
..++..++..|++++ ++++++.+|.|| ..+-++++++| ||++|.++.... . ++ ||+||||..|
T Consensus 88 ~~~a~~~e~~Gi~~iGps~ea~~~~~DK----~~ar~ll~~~G---VPt~p~~~lv~s~dea~~~a~~igyPvVVKP~~g 160 (1201)
T TIGR02712 88 AAFAEACEAAGIVFVGPTPEQIRKFGLK----HTARELAEAAG---VPLLPGTGLLSSLDEALEAAKEIGYPVMLKSTAG 160 (1201)
T ss_pred HHHHHHHHHcCCcEECCCHHHHHHhcCH----HHHHHHHHHCC---CCCCCceeecCCHHHHHHHHHhcCCeEEEEECCC
Confidence 456788999999865 789999999999 44445688999 686665533221 1 23 9999999999
Q ss_pred CcccceEEecChhhHHHHHHHHHh------hCceEEeecCCCCCCcEEEEEECC---eEEEEE-EE-ec--CCCcccccC
Q psy10366 80 HSGFGKVRVESNQDFQDMAGVVAV------ANTYCTTEPYIDSKFDVHVQKIGS---NYKAFQ-RK-SI--SGNWKTNTG 146 (340)
Q Consensus 80 s~G~Gv~lv~~~~~l~~i~~~l~~------~~~~~~vQefI~~g~DIRv~VIG~---~v~A~~-R~-s~--~~~WktNvg 146 (340)
++|+|+.+++|.+++....+.... .+..+++||||+.++-+-|+++++ +++++. |. +. .+.+.....
T Consensus 161 gGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~eveV~v~~Dg~g~vv~lg~rd~s~qr~~~k~vee~ 240 (1201)
T TIGR02712 161 GGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVEET 240 (1201)
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEECCCCeEEEeeEEEeeeEecCccEEEEc
Confidence 999999999999998877665431 123467899999888899988853 455542 21 10 001111100
Q ss_pred CceeeecCCChHHHHHHHHHHHHhCCCcEEEEeEEEcC-CCCeEEEeecCCccccccc--chhHHHHHHHHHHHHHHH
Q psy10366 147 SAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGK-DGKEHIIEVNDSALSLMGE--TQEEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 147 ga~~e~~~~~ee~~~~a~~aa~a~~GldiaGVDll~~~-dG~~~VlEVN~s~~P~~~g--~~~~~~~~IA~~vi~~i~ 221 (340)
-+...+-+..+++.+++.+++++++--.++.||++.+. +|++||+|||.- +.... .+..++.|+.+.++....
T Consensus 241 Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~~y~lEVNpR--lq~~~~lte~~tGvDlve~~ir~a~ 316 (1201)
T TIGR02712 241 PAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTR--LQVEHPVTEMVTGLDLVEWMIRIAA 316 (1201)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCCEEEEEEECC--cCcchhhHHHHhCCCHHHHHHHHHc
Confidence 00000011224556677777777632246779999985 578999999965 43221 234567788888777543
No 63
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.47 E-value=2.5e-12 Score=125.50 Aligned_cols=182 Identities=17% Similarity=0.227 Sum_probs=134.1
Q ss_pred HHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCC---Cc--------cc-ccEEEecCC
Q psy10366 12 LLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPN---FK--------EM-YPVVFKIGH 78 (340)
Q Consensus 12 vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~---~~--------~~-~PvVvKp~~ 78 (340)
+--.||.+|+|.+ ....+-..+-|| ..+-++++..| +|..+...... .. .+ ||++|||..
T Consensus 79 iqg~le~~giPyvg~gv~~Sa~~mdk----~~~K~~~~~~g---~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~ 151 (317)
T COG1181 79 IQGLLELLGIPYVGKGVLASAGAMDK----IVTKRLFKAEG---LPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPAR 151 (317)
T ss_pred HHHHHHHhCCCEecCchhhhhhcccH----HHHHHHHHHCC---CCccceeeeecccchhHHHHHhhcccCCCEEEEcCC
Confidence 4445899998864 667888999999 44444578888 67544332221 11 12 999999999
Q ss_pred CCcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCeE--EE--EEEEecC-CCcc----cccC-Cc
Q psy10366 79 AHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNY--KA--FQRKSIS-GNWK----TNTG-SA 148 (340)
Q Consensus 79 Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~v--~A--~~R~s~~-~~Wk----tNvg-ga 148 (340)
.-...|+.++++..+++.+.+....++.-+++|+|+. ++.|-|-++|+.. .+ ..+.... ..|- .|+. ++
T Consensus 152 ~gSSvg~~~v~~~~d~~~~~e~a~~~d~~vl~e~~~~-~rei~v~vl~~~~~~~~l~~~eI~~~~~~fydye~Ky~~~gg 230 (317)
T COG1181 152 EGSSVGRSPVNVEGDLQSALELAFKYDRDVLREQGIT-GREIEVGVLGNDYEEQALPLGEIPPKGEEFYDYEAKYLSTGG 230 (317)
T ss_pred ccceeeEEEeeeccchHHHHHHHHHhCCceeeccCCC-cceEEEEecCCcccceecCceEEecCCCeEEeeeccccCCCC
Confidence 9999999999999999998888777778888999999 9999999999944 22 2222112 2332 3554 43
Q ss_pred -eeeec-CCC----hHHHHHHHHHHHHhCCCcEEEEeEEEcC-CCCeEEEeecCCccccccc
Q psy10366 149 -MLEQI-PMT----DHYKLWIDEVAELFGGLDICALEIIVGK-DGKEHIIEVNDSALSLMGE 203 (340)
Q Consensus 149 -~~e~~-~~~----ee~~~~a~~aa~a~~GldiaGVDll~~~-dG~~~VlEVN~s~~P~~~g 203 (340)
..... .++ ++++++|.+|.+++++.++++||++.++ +|+++|+|||.+ |||-.
T Consensus 231 ~~~~~pa~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~--PG~t~ 290 (317)
T COG1181 231 AQYDIPAGLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTN--PGMTA 290 (317)
T ss_pred ceeeCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCCEEEEEEeCC--CCCcc
Confidence 22222 244 4568999999999977999999999987 789999999966 99644
No 64
>PLN02735 carbamoyl-phosphate synthase
Probab=99.44 E-value=2.9e-12 Score=142.46 Aligned_cols=191 Identities=14% Similarity=0.186 Sum_probs=131.1
Q ss_pred HHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc--ccEEEecCCCCcccce
Q psy10366 16 FNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM--YPVVFKIGHAHSGFGK 85 (340)
Q Consensus 16 le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~--~PvVvKp~~Gs~G~Gv 85 (340)
|+..|||++ ++++++.+|.|| ..+.++++++| +|+++.....+.. ++ ||+||||..|++|.|+
T Consensus 124 Le~~GI~~~G~~~~ai~~~~DK----~~~k~~l~~~G---Ipvp~~~~v~s~eea~~~~~~iG~yPvVVKP~~~~GG~Gv 196 (1102)
T PLN02735 124 LEKYGVELIGAKLDAIKKAEDR----ELFKQAMEKIG---LKTPPSGIATTLDECFEIAEDIGEFPLIIRPAFTLGGTGG 196 (1102)
T ss_pred HHHCCCEEECCCHHHHHHhcCH----HHHHHHHHHCC---CCCCCeeEeCCHHHHHHHHHHhCCCCEEEEeCCCCCCCce
Confidence 788999775 699999999999 44445688999 6854433322211 22 8999999999999999
Q ss_pred EEecChhhHHHHHHHHH--hhCceEEeecCCCCCCcEEEEEECC---eE--EEEEEEecCCCcccccCCc-eeeec-CCC
Q psy10366 86 VRVESNQDFQDMAGVVA--VANTYCTTEPYIDSKFDVHVQKIGS---NY--KAFQRKSISGNWKTNTGSA-MLEQI-PMT 156 (340)
Q Consensus 86 ~lv~~~~~l~~i~~~l~--~~~~~~~vQefI~~g~DIRv~VIG~---~v--~A~~R~s~~~~WktNvgga-~~e~~-~~~ 156 (340)
.+++|.++|+....... .....+++|+||...+.+-|.|+++ ++ ++.+..-... -.+.+.. ..-|. +++
T Consensus 197 ~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~G~kE~ev~Vl~D~~g~~i~v~~ie~~dp~--gvh~G~s~~vaPa~tL~ 274 (1102)
T PLN02735 197 GIAYNKEEFETICKAGLAASITSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENIDPM--GVHTGDSITVAPAQTLT 274 (1102)
T ss_pred EEECCHHHHHHHHHHHHhcCCCCeEEEEEecCCCeEEEEEEEEcCCCCEEEEeeEEEEcCC--ccccCCEEEEEeCCCCC
Confidence 99999999998876532 2245678999998666788888854 33 2333321110 0112221 12233 345
Q ss_pred h----HHHHHHHHHHHHhCCC--cEEEEeEEEc-CCCCeEEEeecCCcccccccc----hhHHHHHHHHHHHHHH
Q psy10366 157 D----HYKLWIDEVAELFGGL--DICALEIIVG-KDGKEHIIEVNDSALSLMGET----QEEDRRFIVDLVIQKM 220 (340)
Q Consensus 157 e----e~~~~a~~aa~a~~Gl--diaGVDll~~-~dG~~~VlEVN~s~~P~~~g~----~~~~~~~IA~~vi~~i 220 (340)
+ ++++++.++++++ |+ ++|-||++.+ ++|++||+|||. -+.+. ..+++.++|+..+...
T Consensus 275 ~~~~q~l~~~A~ki~~aL-gi~~G~~nVqf~l~~~~g~~~ViEVNP----R~s~ss~l~s~atG~~~a~~~~kla 344 (1102)
T PLN02735 275 DKEYQRLRDYSVAIIREI-GVECGGSNVQFAVNPVDGEVMIIEMNP----RVSRSSALASKATGFPIAKMAAKLS 344 (1102)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCcCceEEEEEEECCCCcEEEEEecC----CCCCcchhhhhhhCCCHHHHHHHHH
Confidence 3 5577788899998 65 7999999998 588999999994 33332 2467888888776544
No 65
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.41 E-value=8.9e-12 Score=138.20 Aligned_cols=194 Identities=13% Similarity=0.185 Sum_probs=128.6
Q ss_pred HHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc-ccEEEecCCCCcccce
Q psy10366 15 GFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM-YPVVFKIGHAHSGFGK 85 (340)
Q Consensus 15 ~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~PvVvKp~~Gs~G~Gv 85 (340)
.|+..|++++ .++++|.+|.|| ..+.++++++| +|+++.....+.. ++ ||+||||..|.+|+|+
T Consensus 106 ~le~~Gv~~~G~~~~ai~~~~DK----~~~k~~l~~~G---ipvp~~~~v~s~~e~~~~~~~igyPvIVKP~~g~gg~Gv 178 (1050)
T TIGR01369 106 VLEKYGVEVLGTPVEAIKKAEDR----ELFREAMKEIG---EPVPESEIAHSVEEALAAAKEIGYPVIVRPAFTLGGTGG 178 (1050)
T ss_pred HHHHCCCEEECCCHHHHHHhCCH----HHHHHHHHHCC---CCCCCeeecCCHHHHHHHHHHhCCCeEEECCCCCCCCCe
Confidence 4889999987 889999999999 44455688999 6855543332222 23 9999999999999999
Q ss_pred EEecChhhHHHHHHHHHhh--CceEEeecCCCCCCcEEEEEECC---eEE--EEEEEecCCCcccccCCc-eeeec-CCC
Q psy10366 86 VRVESNQDFQDMAGVVAVA--NTYCTTEPYIDSKFDVHVQKIGS---NYK--AFQRKSISGNWKTNTGSA-MLEQI-PMT 156 (340)
Q Consensus 86 ~lv~~~~~l~~i~~~l~~~--~~~~~vQefI~~g~DIRv~VIG~---~v~--A~~R~s~~~~WktNvgga-~~e~~-~~~ 156 (340)
.+++|+++|.......... ...+++|+||+..+.+=+.|+.+ +++ +.+..-.. . -.+.++. ..-|. .++
T Consensus 179 ~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~G~~Eiev~v~rd~~g~~~~~~~~e~~~p-~-gvh~g~~i~v~Pa~tl~ 256 (1050)
T TIGR01369 179 GIAYNREELKEIAERALSASPINQVLVEKSLAGWKEIEYEVMRDSNDNCITVCNMENFDP-M-GVHTGDSIVVAPSQTLT 256 (1050)
T ss_pred EEECCHHHHHHHHHHHHhcCCCCcEEEEEcccCceEEEEEEEEeCCCCEEEEeeceeccC-c-ceecCceEEEecCCCCC
Confidence 9999999988875433221 14577899998666777777633 332 22221000 0 0011211 12222 245
Q ss_pred h----HHHHHHHHHHHHhCCCcEEEEeEEEcC-CCCeEEEeecCCccccccc--chhHHHHHHHHHHHHH
Q psy10366 157 D----HYKLWIDEVAELFGGLDICALEIIVGK-DGKEHIIEVNDSALSLMGE--TQEEDRRFIVDLVIQK 219 (340)
Q Consensus 157 e----e~~~~a~~aa~a~~GldiaGVDll~~~-dG~~~VlEVN~s~~P~~~g--~~~~~~~~IA~~vi~~ 219 (340)
+ ++++++.+++++++--+.+.||++.++ +|++||+|||.- +.-.+ ....++.+|++..+..
T Consensus 257 ~~~~~~l~~~a~~i~~~Lg~~G~~~Vef~l~~~~g~~~viEiNPR--~~~s~~l~s~atG~pl~~~~~~~ 324 (1050)
T TIGR01369 257 DKEYQMLRDASIKIIRELGIEGGCNVQFALNPDSGRYYVIEVNPR--VSRSSALASKATGYPIAKVAAKL 324 (1050)
T ss_pred HHHHHHHHHHHHHHHHHcCCcceeEEEEEEECCCCcEEEEEeecC--cCcchhhhhHHhCCCHHHHHHHH
Confidence 4 356788888898865567999999986 478999999965 33222 2346777777766543
No 66
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.41 E-value=2.9e-11 Score=119.84 Aligned_cols=196 Identities=13% Similarity=0.127 Sum_probs=131.0
Q ss_pred HHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCccc-ccEEEecCCCCcccceEEecChhhH
Q psy10366 16 FNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM-YPVVFKIGHAHSGFGKVRVESNQDF 94 (340)
Q Consensus 16 le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~~-~PvVvKp~~Gs~G~Gv~lv~~~~~l 94 (340)
++..|+|++-+.+++..+.||. ...++|+++| ||+ |.. +....++ +|+||||..|++|+|+.+++|.+++
T Consensus 104 l~~~~~p~~gn~~~l~~e~dK~----~~k~~L~~aG---Ip~-p~~-~~~~~~i~~PvIVKp~~g~ggkGv~i~~s~~El 174 (358)
T PRK13278 104 VEKFKVPMFGNREILRWEADRD----KERKLLEEAG---IRI-PRK-YESPEDIDRPVIVKLPGAKGGRGYFIAKSPEEF 174 (358)
T ss_pred HHHCCCCcCCCHHHHHHhcCHH----HHHHHHHHcC---CCC-CCE-eCCHHHcCCCEEEEeCCCCCCCCeEEeCCHHHH
Confidence 4468899999999999999993 4445689999 684 443 3333455 9999999999999999999999998
Q ss_pred HHHHHHHHh-----hCceEEeecCCC-CCCcEEEEEE--CCeE--EEEEEEecC-CCcccc---------------cCCc
Q psy10366 95 QDMAGVVAV-----ANTYCTTEPYID-SKFDVHVQKI--GSNY--KAFQRKSIS-GNWKTN---------------TGSA 148 (340)
Q Consensus 95 ~~i~~~l~~-----~~~~~~vQefI~-~g~DIRv~VI--G~~v--~A~~R~s~~-~~WktN---------------vgga 148 (340)
+...+.+.. ....+++||||. .-+.+.+|+. .|++ .++-||-.+ .||..- +-.|
T Consensus 175 ~~~~~~l~~~~~~~~~~~~iIEEfI~G~e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~~r~p~~~~~~~~~~p~~v~~G 254 (358)
T PRK13278 175 KEKIDKLIERGLITEVEEAIIQEYVVGVPYYFHYFYSPIKNRLELLGIDRRYESNIDGLVRIPAKDQLELGIDPTYVVVG 254 (358)
T ss_pred HHHHHHHHhccccCCCCeEEEEecCCCcEEEEEEEEeccCCeEEEEeeceeeeecccceeeccchhhhhcccCCceeEec
Confidence 877665421 135567899999 5677888876 6775 577655322 222111 1011
Q ss_pred eeeecCCC----hHHHHHHHHHHHH----h--CCCcEEEEeEEEcCCCCeEEEeecCCccc----ccccch---------
Q psy10366 149 MLEQIPMT----DHYKLWIDEVAEL----F--GGLDICALEIIVGKDGKEHIIEVNDSALS----LMGETQ--------- 205 (340)
Q Consensus 149 ~~e~~~~~----ee~~~~a~~aa~a----~--~GldiaGVDll~~~dG~~~VlEVN~s~~P----~~~g~~--------- 205 (340)
-.|+.+. +...+.+.++.++ + +-..-.++|++.++||+.+|+|||+--.. ++.|..
T Consensus 255 -n~P~~~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d~~~~V~Eis~R~~ggtn~~~~~s~y~~~~~~~~ 333 (358)
T PRK13278 255 -NIPVVLRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTDNLEIVVFEISARIVAGTNLYMNGSPYSYLYWDEP 333 (358)
T ss_pred -ceeccchHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcCCCCEEEEEEeCcccCCccceeCCCcchheecCCc
Confidence 1222232 3334444444443 4 33466889999999999999999975101 333322
Q ss_pred hHHHHHHHHHHHHHHH
Q psy10366 206 EEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 206 ~~~~~~IA~~vi~~i~ 221 (340)
-.+++.||..|-..++
T Consensus 334 ~~~grria~ei~~a~~ 349 (358)
T PRK13278 334 MSMGRRIAREIKLALE 349 (358)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 2579999999865554
No 67
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.40 E-value=4.8e-12 Score=128.48 Aligned_cols=202 Identities=18% Similarity=0.180 Sum_probs=135.8
Q ss_pred HHHHHHHhCCCcccC-ChhHHHHcCCchHHHHHHHHHHHHcCCCCCCccccccc--CCCc-------cc-ccEEEecCCC
Q psy10366 11 NLLLGFNIGGIPSIN-TLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYY--PNFK-------EM-YPVVFKIGHA 79 (340)
Q Consensus 11 ~vl~~le~~GvpviN-s~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~--~~~~-------~~-~PvVvKp~~G 79 (340)
...+..+..|+-.+. ++++|.+|+|| ..+-++++++| +|++|.+.- .... +. |||||||..|
T Consensus 90 ~fae~~~~~gl~fiGP~~~~i~~mgdK----~~ar~~~~~aG---VP~vpgs~~~~~~~ee~~~~a~~iGyPVivKa~~G 162 (449)
T COG0439 90 AFAEACAEAGLTFIGPSAEAIRRMGDK----ITARRLMAKAG---VPVVPGSDGAVADNEEALAIAEEIGYPVIVKAAAG 162 (449)
T ss_pred HHHHHHHHcCCeeeCcCHHHHHHhhhH----HHHHHHHHHcC---CCcCCCCCCCcCCHHHHHHHHHHcCCCEEEEECCC
Confidence 355667778866665 57899999999 55566789999 687775522 1111 12 9999999999
Q ss_pred CcccceEEecChhhHHHHHHHHHh------hCceEEeecCCCCCCcEEEEEECCeE---EE-EEEEecCCCcccccCCce
Q psy10366 80 HSGFGKVRVESNQDFQDMAGVVAV------ANTYCTTEPYIDSKFDVHVQKIGSNY---KA-FQRKSISGNWKTNTGSAM 149 (340)
Q Consensus 80 s~G~Gv~lv~~~~~l~~i~~~l~~------~~~~~~vQefI~~g~DIRv~VIG~~v---~A-~~R~s~~~~WktNvgga~ 149 (340)
.+|+|+.+|+|.++|......... .+.-+++|+||+..+=+-++|+|+.. +. ..|...-..|--++.--.
T Consensus 163 gGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD~~g~~i~l~eRdcsiqrr~qkvieea 242 (449)
T COG0439 163 GGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCSIQRRHQKVIEEA 242 (449)
T ss_pred CCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCceEEEEEEEcCcccEEEEEeccCCCcCCccceeeec
Confidence 999999999999998887765432 12336789999999999999998864 33 455421122322322100
Q ss_pred eeecCCChHH----HHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccc-cchhHHHHHHHHHHHHHHH
Q psy10366 150 LEQIPMTDHY----KLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMG-ETQEEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 150 ~e~~~~~ee~----~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~-g~~~~~~~~IA~~vi~~i~ 221 (340)
.. ..++++. -+++.+++++++--...-|++|.+++|++|++|+|.- +-+.- -.+..++.||....+.-..
T Consensus 243 ps-p~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~~~~~yfiEmN~R-lqveh~vte~vtGiDlv~~qi~ia~ 317 (449)
T COG0439 243 PS-PLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDSNGEFYFIEMNTR-LQVEHPVTEMVTGIDLVKEQIRIAA 317 (449)
T ss_pred CC-CCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCEEEEEEecc-cccCccceehhhhhhHHHHHHHHHc
Confidence 01 1123444 3455556666554556779999998788999999964 11111 2566889999888776553
No 68
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.40 E-value=8.8e-12 Score=138.43 Aligned_cols=192 Identities=15% Similarity=0.203 Sum_probs=127.8
Q ss_pred HHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc-ccEEEecCCCCcccce
Q psy10366 15 GFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM-YPVVFKIGHAHSGFGK 85 (340)
Q Consensus 15 ~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~PvVvKp~~Gs~G~Gv 85 (340)
.|+..|++++ .+++++..|.|| ..+.++++++| +|++++....+.. ++ ||+||||..|.+|+|+
T Consensus 107 ~le~~Gv~~~g~~~~~i~~~~DK----~~~k~~l~~~G---ipvp~~~~v~s~~e~~~~~~~ig~PvVVKP~~g~gg~Gv 179 (1066)
T PRK05294 107 VLEKYGVELIGAKLEAIDKAEDR----ELFKEAMKKIG---LPVPRSGIAHSMEEALEVAEEIGYPVIIRPSFTLGGTGG 179 (1066)
T ss_pred HHHHCCCEEECCCHHHHHHhcCH----HHHHHHHHHCC---cCCCCeeeeCCHHHHHHHHHHcCCCeEEEcCCCCCCCCe
Confidence 3788999986 689999999999 44455689999 6854433332222 23 8999999999999999
Q ss_pred EEecChhhHHHHHHH-HHhh-CceEEeecCCCCCCcEEEEEECC---eEE--EEEEEecCCCcc-cccCCc-eeeec-CC
Q psy10366 86 VRVESNQDFQDMAGV-VAVA-NTYCTTEPYIDSKFDVHVQKIGS---NYK--AFQRKSISGNWK-TNTGSA-MLEQI-PM 155 (340)
Q Consensus 86 ~lv~~~~~l~~i~~~-l~~~-~~~~~vQefI~~g~DIRv~VIG~---~v~--A~~R~s~~~~Wk-tNvgga-~~e~~-~~ 155 (340)
.+++|.+++...... +... ...+++|+||+..+.+-+.|+.+ ++. +.+.. -+|. .+.++. ...|. .+
T Consensus 180 ~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~G~~Eisv~v~rd~~g~~~~~~~~e~---~dp~gih~g~~~~~~Pa~~l 256 (1066)
T PRK05294 180 GIAYNEEELEEIVERGLDLSPVTEVLIEESLLGWKEYEYEVMRDKNDNCIIVCSIEN---IDPMGVHTGDSITVAPAQTL 256 (1066)
T ss_pred EEECCHHHHHHHHHHHHhhCCCCeEEEEEcccCceEEEEEEEEcCCCCEEEEeeeee---ccccceecCCeEEEeCCCCC
Confidence 999999998887763 3211 24567899998656666666632 343 22221 1121 112221 12233 45
Q ss_pred Ch----HHHHHHHHHHHHhCCC-cEEEEeEEEc-CCCCeEEEeecCCccccccc--chhHHHHHHHHHHHH
Q psy10366 156 TD----HYKLWIDEVAELFGGL-DICALEIIVG-KDGKEHIIEVNDSALSLMGE--TQEEDRRFIVDLVIQ 218 (340)
Q Consensus 156 ~e----e~~~~a~~aa~a~~Gl-diaGVDll~~-~dG~~~VlEVN~s~~P~~~g--~~~~~~~~IA~~vi~ 218 (340)
++ +.+++|.+++++++-- +++.||+..+ ++|++||+|||.- ++-.+ ..+.++.+++...+.
T Consensus 257 ~~~~~~~l~~~a~ki~~aLg~~~G~~~vef~~~~~~g~~~viEiNPR--~~~s~~~~s~~tG~pl~~~~~~ 325 (1066)
T PRK05294 257 TDKEYQMLRDASIAIIREIGVETGGCNVQFALNPKDGRYIVIEMNPR--VSRSSALASKATGYPIAKVAAK 325 (1066)
T ss_pred CHHHHHHHHHHHHHHHHHcCCccCceEEEEEEECCCCcEEEEEeecC--CCcceeeeeHhhCCCHHHHHHH
Confidence 54 4568888889988554 6899999998 5788999999954 33222 234567777766554
No 69
>PLN02735 carbamoyl-phosphate synthase
Probab=99.40 E-value=6.4e-12 Score=139.77 Aligned_cols=191 Identities=11% Similarity=0.115 Sum_probs=132.0
Q ss_pred CCc-ccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc-ccEEEecCCCCcccceEEecC
Q psy10366 20 GIP-SINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM-YPVVFKIGHAHSGFGKVRVES 90 (340)
Q Consensus 20 Gvp-viNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~PvVvKp~~Gs~G~Gv~lv~~ 90 (340)
|++ +-.++++|.+|.|| ..+.++++++| +|+++.....+.. ++ ||+||||..|.+|+|+.+++|
T Consensus 686 gi~i~G~s~e~i~i~~DK----~~~k~~l~~~G---Ip~p~~~~v~s~eea~~~a~~iGyPvvVKP~~g~gG~G~~iV~~ 758 (1102)
T PLN02735 686 NVKIWGTSPDSIDAAEDR----ERFNAILNELK---IEQPKGGIARSEADALAIAKRIGYPVVVRPSYVLGGRAMEIVYS 758 (1102)
T ss_pred CeEEECCCHHHHHHhcCH----HHHHHHHHHcC---CCCCCeeEeCCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECC
Confidence 443 45899999999999 45555689999 6855543322221 23 999999999999999999999
Q ss_pred hhhHHHHHHHHHhh--CceEEeecCCCCCCcEEEEEECC---eEE--EEEEEecCCCcccccCCc-eeee-cCCC----h
Q psy10366 91 NQDFQDMAGVVAVA--NTYCTTEPYIDSKFDVHVQKIGS---NYK--AFQRKSISGNWKTNTGSA-MLEQ-IPMT----D 157 (340)
Q Consensus 91 ~~~l~~i~~~l~~~--~~~~~vQefI~~g~DIRv~VIG~---~v~--A~~R~s~~~~WktNvgga-~~e~-~~~~----e 157 (340)
.++++...+..... ...+++|+||+.++-+=|.++++ +++ +.+..-... ..+.+.. ..-| ..++ +
T Consensus 759 ~eeL~~al~~a~~~~~~~~vlVEefI~~g~Ei~V~vl~D~~G~vv~~~i~e~~~~~--gvhsGds~~~~P~~~L~~e~~~ 836 (1102)
T PLN02735 759 DDKLKTYLETAVEVDPERPVLVDKYLSDATEIDVDALADSEGNVVIGGIMEHIEQA--GVHSGDSACSLPTQTIPSSCLA 836 (1102)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEecCCcEEEEEEEEECCCCCEEEecceEeeecc--CccCCCccEEecCCCCCHHHHH
Confidence 99998877754322 23578999998888888888853 443 233321110 1122221 1222 1355 4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCccccc--ccchhHHHHHHHHHHHHHHH
Q psy10366 158 HYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLM--GETQEEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 158 e~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~--~g~~~~~~~~IA~~vi~~i~ 221 (340)
++++++.+++++++--+++.||++.+++|++||+|||.. |+- .-....++.++++..+.-+.
T Consensus 837 ~i~~~a~ki~~~L~~~G~~~vqf~v~~dg~~yviEiNpR--~s~t~p~~~katGidl~~~~~~~~~ 900 (1102)
T PLN02735 837 TIRDWTTKLAKRLNVCGLMNCQYAITPSGEVYIIEANPR--ASRTVPFVSKAIGHPLAKYASLVMS 900 (1102)
T ss_pred HHHHHHHHHHHHcCCcceeeEEEEEcCCCcEEEEEEeCC--CCccHHHHHHHHCCCHHHHHHHHHc
Confidence 456778888888877788999999988899999999965 541 11346789999988877664
No 70
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.37 E-value=2e-11 Score=135.68 Aligned_cols=194 Identities=14% Similarity=0.210 Sum_probs=129.4
Q ss_pred HHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc-ccEEEecCCCCcccce
Q psy10366 15 GFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM-YPVVFKIGHAHSGFGK 85 (340)
Q Consensus 15 ~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~PvVvKp~~Gs~G~Gv 85 (340)
.|+..|++++ .+++++.+|.|| ..+.++|+++| +|+++.....+.. ++ ||+||||..|.+|+|+
T Consensus 107 ~Le~~gv~l~g~~~~~i~~~~DK----~~~k~~l~~~G---Ipvp~~~~v~s~ee~~~~~~~igyPvVVKP~~g~gG~Gv 179 (1068)
T PRK12815 107 ILEQYGVELLGTNIEAIQKGEDR----ERFRALMKELG---EPVPESEIVTSVEEALAFAEKIGFPIIVRPAYTLGGTGG 179 (1068)
T ss_pred HHHHCCCEEECCCHHHHHHhcCH----HHHHHHHHHcC---cCCCCceeeCCHHHHHHHHHHcCCCEEEEECcCCCCCce
Confidence 4789999986 789999999999 44445689999 6854433232222 23 8999999999999999
Q ss_pred EEecChhhHHHHHHHHHhh--CceEEeecCCCCCCcEEEEEECC---eEE--EEEEEecCCCcccccCCc-eeeec-CCC
Q psy10366 86 VRVESNQDFQDMAGVVAVA--NTYCTTEPYIDSKFDVHVQKIGS---NYK--AFQRKSISGNWKTNTGSA-MLEQI-PMT 156 (340)
Q Consensus 86 ~lv~~~~~l~~i~~~l~~~--~~~~~vQefI~~g~DIRv~VIG~---~v~--A~~R~s~~~~WktNvgga-~~e~~-~~~ 156 (340)
.+++|+++|..+....... ...+++|+||+..+.+=|.|+.+ +++ +.++. .. ....+.|.. ...|. .++
T Consensus 180 ~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~G~~E~sv~v~rD~~g~~~~~~~~e~-~~-p~gi~tG~s~~v~Pa~~l~ 257 (1068)
T PRK12815 180 GIAENLEELEQLFKQGLQASPIHQCLLEESIAGWKEIEYEVMRDRNGNCITVCNMEN-ID-PVGIHTGDSIVVAPSQTLT 257 (1068)
T ss_pred EEECCHHHHHHHHHHHHhcCCCCeEEEEEccCCCeEEEEEEEEcCCCCEEEEEecee-cc-cccccCCceEEEecCCCCC
Confidence 9999999988877433221 23577899998666777777743 443 33332 11 111122211 22232 345
Q ss_pred hH----HHHHHHHHHHHhCCCcEEEEeEEEcCC-CCeEEEeecCCcccccccc--hhHHHHHHHHHHHHH
Q psy10366 157 DH----YKLWIDEVAELFGGLDICALEIIVGKD-GKEHIIEVNDSALSLMGET--QEEDRRFIVDLVIQK 219 (340)
Q Consensus 157 ee----~~~~a~~aa~a~~GldiaGVDll~~~d-G~~~VlEVN~s~~P~~~g~--~~~~~~~IA~~vi~~ 219 (340)
++ +++++.+++++++--+.+.||+..+++ |+++|+|||.- +.-.+. ...++..++...+..
T Consensus 258 ~~~~~~l~~~a~ki~~~Lg~~G~~~vef~l~~~~g~~~ViEINPR--~~~s~~l~~~atG~pl~~~~~~~ 325 (1068)
T PRK12815 258 DDEYQMLRSASLKIISALGVVGGCNIQFALDPKSKQYYLIEVNPR--VSRSSALASKATGYPIAKIAAKL 325 (1068)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCCcEEEEEEecC--cccchhhhhHhhCCcHHHHHHHH
Confidence 43 577888888888655788999998865 68999999954 322222 246777777766544
No 71
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=99.34 E-value=4.8e-11 Score=114.74 Aligned_cols=171 Identities=18% Similarity=0.184 Sum_probs=116.0
Q ss_pred CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCC-------C-----cc---c------ccEEEecCCCCccc
Q psy10366 25 NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPN-------F-----KE---M------YPVVFKIGHAHSGF 83 (340)
Q Consensus 25 Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~-------~-----~~---~------~PvVvKp~~Gs~G~ 83 (340)
|+.+...++.|| ..+.++++.+| ||+++ +++.. . ++ + .++|+||..|++|.
T Consensus 16 N~~~~~~l~~DK----~~~~~l~~~~g---i~vP~-~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~ 87 (285)
T PF14397_consen 16 NPREYYPLLDDK----LLFKQLFRDYG---IPVPE-AIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGK 87 (285)
T ss_pred CchhhccccCCH----HHHHHHHHHhc---CCCCc-eEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCcc
Confidence 999999999999 44445688899 67444 32211 0 01 1 57999999999999
Q ss_pred ceEEecChh------hHHHHHHHHHhhC-ceEEeecCCCC-----------CCcEEEEEE-C-Ce--E-EEEEEEecCCC
Q psy10366 84 GKVRVESNQ------DFQDMAGVVAVAN-TYCTTEPYIDS-----------KFDVHVQKI-G-SN--Y-KAFQRKSISGN 140 (340)
Q Consensus 84 Gv~lv~~~~------~l~~i~~~l~~~~-~~~~vQefI~~-----------g~DIRv~VI-G-~~--v-~A~~R~s~~~~ 140 (340)
|+.+++..+ ....+...+.... ..+++||+|.. =-+|||.++ + ++ + .|++|-+..++
T Consensus 88 Gi~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~~~~~~~a~lRlg~~~~ 167 (285)
T PF14397_consen 88 GILVIDRRDGSEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDGEVEVLMAMLRLGRGGS 167 (285)
T ss_pred CEEEEEeecCcccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCCeeEEEEEEEEeCCCCC
Confidence 999987765 2334443333222 14557999983 159999988 3 33 3 37888764444
Q ss_pred cccccC-C----------c------------eeeecCCC------------hHHHHHHHHHHHHhCCCcEEEEeEEEcCC
Q psy10366 141 WKTNTG-S----------A------------MLEQIPMT------------DHYKLWIDEVAELFGGLDICALEIIVGKD 185 (340)
Q Consensus 141 WktNvg-g----------a------------~~e~~~~~------------ee~~~~a~~aa~a~~GldiaGVDll~~~d 185 (340)
-+-|.+ | + ..+..+-| ++..+++.+|++.+-++.|.|.|+..+++
T Consensus 168 ~~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWDvait~~ 247 (285)
T PF14397_consen 168 GVDNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWDVAITED 247 (285)
T ss_pred cccccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEEEEEcCC
Confidence 444541 1 0 11111211 56688888888888899999999999999
Q ss_pred CCeEEEeecCCcccccccc
Q psy10366 186 GKEHIIEVNDSALSLMGET 204 (340)
Q Consensus 186 G~~~VlEVN~s~~P~~~g~ 204 (340)
| ++|+|.|..+.|++.-.
T Consensus 248 G-p~llE~N~~~~pgl~~~ 265 (285)
T PF14397_consen 248 G-PVLLEGNARWDPGLMIQ 265 (285)
T ss_pred C-cEEEEeeCCCCCCcHhh
Confidence 9 89999998876777643
No 72
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=99.31 E-value=7.3e-11 Score=121.26 Aligned_cols=203 Identities=13% Similarity=0.113 Sum_probs=123.8
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccc-cCCCcc-------cccEEEecCCCCc
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITY-YPNFKE-------MYPVVFKIGHAHS 81 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~-~~~~~~-------~~PvVvKp~~Gs~ 81 (340)
.+...|+..|+|++ ++.++..+|+|| ..+-++++++| ||.++... +.+..+ .+|+||||..+++
T Consensus 84 glad~l~~~Gi~v~Gps~~aa~le~dK----~~~K~~l~~~g---Ipt~~~~~~~~~~~ea~~~~~~~~PvVVKP~~~ag 156 (486)
T PRK05784 84 GVADVLREEGFPVFGASSKCARIEKSK----VWARELMWKYS---IPGRLRYKVFYDVEEAAKFIEYGGSVAIKPARQAG 156 (486)
T ss_pred HHHHHHHhCCCCEECCcHHHHHHhcCH----HHHHHHHHHcC---cCCCccceEeCCHHHHHHHHhhcCCEEEeeCCCCC
Confidence 67778999999986 999999999999 34444588999 68322221 222111 2799999999999
Q ss_pred ccceEEecChhh-----H-HHH----HHHH---Hh---hCceEEeecCCC-CCCcEEEEEECCeEEEE--EE---EecCC
Q psy10366 82 GFGKVRVESNQD-----F-QDM----AGVV---AV---ANTYCTTEPYID-SKFDVHVQKIGSNYKAF--QR---KSISG 139 (340)
Q Consensus 82 G~Gv~lv~~~~~-----l-~~i----~~~l---~~---~~~~~~vQefI~-~g~DIRv~VIG~~v~A~--~R---~s~~~ 139 (340)
|+||.+++|.++ + +.+ ...+ .. ....+++||||+ +-+.+-+++-|+.+..+ .+ +...+
T Consensus 157 gkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~G~E~SV~al~dG~~~~~l~~~qd~k~~~~~ 236 (486)
T PRK05784 157 GKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVDGVEYTLQVLTDGETVIPLPLAQDYPHAYED 236 (486)
T ss_pred CCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccCCeEEEEEEEECCCeEEEeeeeEeecceecC
Confidence 999999999773 2 111 1221 11 134678999999 44566666545554322 11 12245
Q ss_pred CcccccCC-ceeee----cCC-ChH----HHHHHHHHHHHhC---CCcE---EEEeEEEc-CCCCeEEEeecCCcccccc
Q psy10366 140 NWKTNTGS-AMLEQ----IPM-TDH----YKLWIDEVAELFG---GLDI---CALEIIVG-KDGKEHIIEVNDSALSLMG 202 (340)
Q Consensus 140 ~WktNvgg-a~~e~----~~~-~ee----~~~~a~~aa~a~~---Gldi---aGVDll~~-~dG~~~VlEVN~s~~P~~~ 202 (340)
|---|+|+ +...+ ++. +++ ..+++..+.++++ |+.| +=++++.+ ++| ++|+|+|.. ++
T Consensus 237 d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~~~~g~~~~G~l~~elmlt~~~G-P~vIE~n~R----~G 311 (486)
T PRK05784 237 GIGPETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIYKETGERYVGVISGQMMLTELWG-PTVIEYYSR----FG 311 (486)
T ss_pred CCCCCCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEecCCC-cEEEEEecc----cC
Confidence 56667764 33333 332 332 2334555555554 6644 45688888 777 699999965 33
Q ss_pred cchh-----HHHHHHHHHHHHHHHhhcC
Q psy10366 203 ETQE-----EDRRFIVDLVIQKMQVSVL 225 (340)
Q Consensus 203 g~~~-----~~~~~IA~~vi~~i~~~~~ 225 (340)
+-+. -...++++.+++-....+.
T Consensus 312 dpe~~~llp~l~~dl~~~~~~~~~g~l~ 339 (486)
T PRK05784 312 DPEASNIIPRIESDFGELFELAATGKLS 339 (486)
T ss_pred CchHHHHHHhccCCHHHHHHHHHcCCCC
Confidence 4222 1233666666665554443
No 73
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=99.30 E-value=9.4e-13 Score=119.47 Aligned_cols=43 Identities=60% Similarity=0.873 Sum_probs=34.2
Q ss_pred cccCCCCCCcceeeccccccccCcChhhHHHHHHHHHHHHhhh
Q psy10366 242 TYIPNDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQS 284 (340)
Q Consensus 242 ~~~~~dg~~~i~~~~ds~~~l~g~~q~~dr~~~~~~v~~~~~~ 284 (340)
.-..|||++||+|+|||+|||+||||+||||+|+|||++||+|
T Consensus 161 ai~~kdGke~Iievnds~m~L~g~~qeeDr~~I~dlV~~km~q 203 (203)
T PF02750_consen 161 AIHGKDGKEYIIEVNDSSMPLIGEHQEEDRRLIADLVVAKMNQ 203 (203)
T ss_dssp EEEETTS-EEEEEEE-TT----GGGHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCCEEEEEecCCcccccchhHHHHHHHHHHHHHHHhcC
Confidence 3457799999999999999999999999999999999999986
No 74
>KOG3895|consensus
Probab=99.30 E-value=2.9e-12 Score=124.68 Aligned_cols=46 Identities=46% Similarity=0.699 Sum_probs=42.3
Q ss_pred ccCCCCCCcceeeccccccccCcChhhHHHHHHHHHHHHhhhhccc
Q psy10366 243 YIPNDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQSSTMS 288 (340)
Q Consensus 243 ~~~~dg~~~i~~~~ds~~~l~g~~q~~dr~~~~~~v~~~~~~~~~~ 288 (340)
.+.|||||||+||+||+|||||||||||||+|++||++||.+...+
T Consensus 351 lhsKdGrd~i~eV~d~smpliGeh~eeDrql~~~Lvvskmaq~l~~ 396 (488)
T KOG3895|consen 351 LHSKDGRDYIIEVMDSSMPLIGEHQEEDRQLISELVVSKMAQLLTR 396 (488)
T ss_pred eecccchhheeeeccccccccccchhHHHHHHHHHHHHHhhhccCC
Confidence 4577999999999999999999999999999999999999887654
No 75
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.29 E-value=9.9e-12 Score=116.91 Aligned_cols=177 Identities=14% Similarity=0.086 Sum_probs=114.8
Q ss_pred HHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCccc-ccEEEecCCCCcccceEEec
Q psy10366 11 NLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM-YPVVFKIGHAHSGFGKVRVE 89 (340)
Q Consensus 11 ~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~~-~PvVvKp~~Gs~G~Gv~lv~ 89 (340)
++.+-+|..=.-.=-|++||..|.||.+||.. |+.+ ++ .|.|+- +.+. -..|+||..|.+|.|+...+
T Consensus 90 ~Ltri~E~~~~nLG~S~~Ai~v~aDK~lty~a----Lr~a----V~-~p~t~e--~~~~~~k~ViKp~dgCgge~i~~~~ 158 (307)
T COG1821 90 SLTRIYEEYVENLGCSPRAIRVAADKRLTYKA----LRDA----VK-QPPTRE--WAEEPKKYVIKPADGCGGEGILFGR 158 (307)
T ss_pred HHHHHHHHHhHhhCCCHHHHhHhhhHHHHHHH----Hhhh----cc-CCCccc--cccCCceEEecccccCCcceeeccC
Confidence 45566665511111389999999999777766 5555 35 344442 2222 46999999999999999888
Q ss_pred ChhhHHHHHHHHHhhCceEEeecCCCC---------CCcEEEEEECCeEEEEEEEecCCCcccccCCceeeecCCChHHH
Q psy10366 90 SNQDFQDMAGVVAVANTYCTTEPYIDS---------KFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYK 160 (340)
Q Consensus 90 ~~~~l~~i~~~l~~~~~~~~vQefI~~---------g~DIRv~VIG~~v~A~~R~s~~~~WktNvgga~~e~~~~~ee~~ 160 (340)
+..++ ++.||||+. |.++.++-++.+.+.|. .....-|.+ -..-..++.++..
T Consensus 159 ~~pd~-------------~i~qEfIeG~~lSVSL~~GEkv~pLsvNrQfi~~~----~~~~~y~gg-~~pi~he~k~~~~ 220 (307)
T COG1821 159 DFPDI-------------EIAQEFIEGEHLSVSLSVGEKVLPLSVNRQFIIFA----GSELVYNGG-RTPIDHELKREAF 220 (307)
T ss_pred CCcch-------------hhHHHhcCCcceEEEEecCCccccceechhhhhhc----cceeeeccC-cCCCCcHHHHHHH
Confidence 76642 346888883 44444444444433221 111222322 2223346777788
Q ss_pred HHHHHHHHHhCCC-cEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHH
Q psy10366 161 LWIDEVAELFGGL-DICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQ 218 (340)
Q Consensus 161 ~~a~~aa~a~~Gl-diaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~ 218 (340)
+.|.+|.+.+.|| +|.|||++.+ |+ +||+|||+....-.=|+..++...+|+++++
T Consensus 221 ~~Ai~aVeci~Gl~GYVGVDlVls-D~-pYvIEINpR~TTp~vg~sr~~~~sv~~LLl~ 277 (307)
T COG1821 221 EEAIRAVECIPGLNGYVGVDLVLS-DE-PYVIEINPRPTTPTVGLSRVTPESVAELLLE 277 (307)
T ss_pred HHHHHHHHhhccccceeeEEEEec-CC-cEEEEecCCCCcceeeeeccccHHHHHHHhc
Confidence 8888888888655 6999999998 64 6999999872223346677888999998875
No 76
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.28 E-value=1.2e-10 Score=114.24 Aligned_cols=187 Identities=15% Similarity=0.183 Sum_probs=136.3
Q ss_pred HHHhCCCcccC--ChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCcc-------c----ccEEEecCCCCc
Q psy10366 15 GFNIGGIPSIN--TLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKE-------M----YPVVFKIGHAHS 81 (340)
Q Consensus 15 ~le~~GvpviN--s~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~-------~----~PvVvKp~~Gs~ 81 (340)
.|+..|+.++= +.++++.+.|| ..+.+.+++.| +|+++...+....+ + .|+.|||..|.+
T Consensus 85 ~F~a~Gv~l~~~~~~~~l~~~~dK----~~~y~~~~~~~---ipvp~~~~v~t~~el~~a~~~l~~~~~~~CvKP~~g~g 157 (329)
T PF15632_consen 85 EFEALGVKLLTASSAETLELADDK----AAFYEFMEANG---IPVPPYWRVRTADELKAAYEELRFPGQPLCVKPAVGIG 157 (329)
T ss_pred HHHHhCCEEEecCCHHHHHHHhhH----HHHHHHHHhCC---CCCCCEEEeCCHHHHHHHHHhcCCCCceEEEecccCCC
Confidence 49999999987 58999999999 44444578889 57544333332222 2 569999999999
Q ss_pred ccceEEec-ChhhHHHHHH-------------HHHhhC--ceEEeecCCC-CCCcEEEEEECCeEE-EEEEEecCCCccc
Q psy10366 82 GFGKVRVE-SNQDFQDMAG-------------VVAVAN--TYCTTEPYID-SKFDVHVQKIGSNYK-AFQRKSISGNWKT 143 (340)
Q Consensus 82 G~Gv~lv~-~~~~l~~i~~-------------~l~~~~--~~~~vQefI~-~g~DIRv~VIG~~v~-A~~R~s~~~~Wkt 143 (340)
|+|..+++ +.++++.+.. .+.... .-++++||++ +-|-|=|+.-+|+++ |.-|+- .
T Consensus 158 g~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~G~EySVD~l~~~G~viaaV~R~K-~----- 231 (329)
T PF15632_consen 158 GRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYLPGPEYSVDCLADEGRVIAAVPRRK-L----- 231 (329)
T ss_pred cceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCCCCCeEEEEEEecCCEEEEEEEEEe-c-----
Confidence 99999998 5556555554 222221 3357899999 688899999999987 455653 2
Q ss_pred ccCCceeeecCCChHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccch--hHHHHHHHHHHHHHHH
Q psy10366 144 NTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQ--EEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 144 Nvgga~~e~~~~~ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~--~~~~~~IA~~vi~~i~ 221 (340)
| ....+.-+++..+++.++++.++--....|++-.+.+|.++++|+|.- .-+|+. ..++.|+..+-+.+..
T Consensus 232 --G--~~q~l~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~~g~p~LLEINpR---~sGGi~~s~~aGvNlp~la~~~~l 304 (329)
T PF15632_consen 232 --G--RRQVLENDEELIELARRLAEAFGLDGLFNIQFRYDEDGNPKLLEINPR---PSGGIGYSCAAGVNLPYLAVKLAL 304 (329)
T ss_pred --C--ceeEEEECHHHHHHHHHHHHHhCCCceEEEEEEEcCCCCEEEEEeCCC---CccchhhHhhcCCChHHHHHHHHc
Confidence 2 223366788999999999999955567899999989999999999965 223433 3468888888876554
No 77
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.19 E-value=3.8e-10 Score=104.28 Aligned_cols=172 Identities=22% Similarity=0.297 Sum_probs=110.4
Q ss_pred CchHHHHHHHHHHHHcCCCCCCcccccccC--CCcc-------c-ccEEEecCCCCcccceEEecChhhHHHHHHHHHh-
Q psy10366 35 DKPWVFAHLLQLQRKLGKENFPLIDITYYP--NFKE-------M-YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAV- 103 (340)
Q Consensus 35 DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~--~~~~-------~-~PvVvKp~~Gs~G~Gv~lv~~~~~l~~i~~~l~~- 103 (340)
|| ....++++++| +|++|.+..+ +.++ + ||++|||..|.+|+|..++.|.++|.+.......
T Consensus 1 Dk----~~~~~~~~~~g---vp~~pg~~~~~~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~ 73 (211)
T PF02786_consen 1 DK----IRFRKLAKKLG---VPVPPGSTVPISSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRE 73 (211)
T ss_dssp SH----HHHHHHHHHTT----BBSSBESSSBSSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHH
T ss_pred CH----HHHHHHHHHCC---CCcCCCCCCCCCCHHHHHHHHHhcCCceEEeecccccccccccccchhhhhhhhhhcccc
Confidence 67 55566789999 6877665542 2221 2 9999999999999999999999999888765322
Q ss_pred h-----CceEEeecCCCCCCcEEEEEECC---eEEE-EEEEecCCCcccccC-Cc-eeeecCCChHH----HHHHHHHHH
Q psy10366 104 A-----NTYCTTEPYIDSKFDVHVQKIGS---NYKA-FQRKSISGNWKTNTG-SA-MLEQIPMTDHY----KLWIDEVAE 168 (340)
Q Consensus 104 ~-----~~~~~vQefI~~g~DIRv~VIG~---~v~A-~~R~s~~~~WktNvg-ga-~~e~~~~~ee~----~~~a~~aa~ 168 (340)
. ...+++++||...+-|=|+|++| +++. ..|.. -..+ +-+ .- ..-+..++++. ++++.+.++
T Consensus 74 s~~~fg~~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~--~~~~-hs~dsi~~~P~~~L~~~~~~~l~~~a~~ia~ 150 (211)
T PF02786_consen 74 SPAAFGDGPVLIEKFIEGAREIEVQVIRDGKGNVVHLGEREC--SEQR-HSQDSIEEAPAQTLSDEERQKLREAAKKIAR 150 (211)
T ss_dssp HHHHHSTS-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEE--EEEE-TTEEEEEEES-SSS-HHHHHHHHHHHHHHHH
T ss_pred CccccccceEEEeeehhhhhhhhhhhhhccccceeeeeeecc--cccc-ccccceeEeeccccchHHHHHHHHHHHHHHH
Confidence 1 35567899999878888888865 3443 45542 2334 222 21 22223566554 556666677
Q ss_pred HhCCCcEEEEeEEEcC-CCCeEEEeecCCccccccc----chhHHHHHHHHHHHHHH
Q psy10366 169 LFGGLDICALEIIVGK-DGKEHIIEVNDSALSLMGE----TQEEDRRFIVDLVIQKM 220 (340)
Q Consensus 169 a~~GldiaGVDll~~~-dG~~~VlEVN~s~~P~~~g----~~~~~~~~IA~~vi~~i 220 (340)
+++=...+-|-++.+. +|.+||+|||. -+.- .+..++.+|+...+.-+
T Consensus 151 ~l~~~G~~tvef~~~~~~~~~y~lEvNp----R~~~~~p~~e~~tg~dlv~~~~~ia 203 (211)
T PF02786_consen 151 ALGYVGAGTVEFAVDPDDGEFYFLEVNP----RLQREHPVTEKVTGYDLVRVQIRIA 203 (211)
T ss_dssp HTT-EEEEEEEEEEETTTTEEEEEEEES----S--TTHHHHHHHHT--HHHHHHHHH
T ss_pred hhCeeecceEEEEEccCccceeeecccC----CCCCcchHHHHHHCCCHHHHHHHHH
Confidence 7643456778999886 88999999994 4442 45678888888776543
No 78
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=99.18 E-value=3.5e-10 Score=109.98 Aligned_cols=188 Identities=15% Similarity=0.230 Sum_probs=112.2
Q ss_pred ChHHHHHHHH--hCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc----------cc-ccEEE
Q psy10366 8 DHKNLLLGFN--IGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK----------EM-YPVVF 74 (340)
Q Consensus 8 ~~r~vl~~le--~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~----------~~-~PvVv 74 (340)
+|+.-|+.+. .-.+++|.++++|+...|..-++..+.++-...+-..+..+.+....... .+ ||+|+
T Consensus 64 ~~~~~l~~y~~~hP~v~viDp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~ 143 (307)
T PF05770_consen 64 DWVQQLEEYIKKHPEVVVIDPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKEAGLKFPLIC 143 (307)
T ss_dssp HHHHHHHHHHHH-TTSEEET-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEE
T ss_pred HHHHHHHHHHHHCCCeEEEcCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHHCCCcccEEe
Confidence 4555554433 35899999999999999996666655443222221124422332222111 12 99999
Q ss_pred ecCCCCc---ccceEEecChhhHHHHHHHHHhhCceEEeecCCC-CCCcEEEEEECCeEEEEEEEecCCCccc-------
Q psy10366 75 KIGHAHS---GFGKVRVESNQDFQDMAGVVAVANTYCTTEPYID-SKFDVHVQKIGSNYKAFQRKSISGNWKT------- 143 (340)
Q Consensus 75 Kp~~Gs~---G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~-~g~DIRv~VIG~~v~A~~R~s~~~~Wkt------- 143 (340)
||..+++ .....+|-|++.|..+ +.-+++||||+ .|.=..|||||+++....|.|.. |+-.
T Consensus 144 KPlvA~Gsa~SH~Maivf~~~gL~~L-------~~P~VlQeFVNHggvLfKVyVvGd~v~~v~R~SLp-n~~~~~~~~~~ 215 (307)
T PF05770_consen 144 KPLVACGSADSHKMAIVFNEEGLKDL-------KPPCVLQEFVNHGGVLFKVYVVGDKVFVVKRPSLP-NVSSGKLDREE 215 (307)
T ss_dssp EESB-SSTSCCCEEEEE-SGGGGTT---------SSEEEEE----TTEEEEEEEETTEEEEEEEE-------SSS-TCGG
T ss_pred eehhhcCCccceEEEEEECHHHHhhc-------CCCEEEEEeecCCCEEEEEEEecCEEEEEECCCCC-CCCcccccccc
Confidence 9977554 4667789999988763 34678999999 58899999999999999998742 3311
Q ss_pred ---------ccC-Cce---e----ee--cCCChHHHHHHHHHHHHhCCCcEEEEeEEEc-CC-CCeEEEeecCCcccccc
Q psy10366 144 ---------NTG-SAM---L----EQ--IPMTDHYKLWIDEVAELFGGLDICALEIIVG-KD-GKEHIIEVNDSALSLMG 202 (340)
Q Consensus 144 ---------Nvg-ga~---~----e~--~~~~ee~~~~a~~aa~a~~GldiaGVDll~~-~d-G~~~VlEVN~s~~P~~~ 202 (340)
|.+ .+. . .. .+..+..+++|...-+++ ||.+.|+|+|.. .. |+++|+.||.- |+++
T Consensus 216 ~~f~~~~vs~~~~~~~~~~~d~~~~~~~~p~~~~v~~la~~LR~~l-gL~LFgfDvI~~~~t~~~~~VIDINyF--PgY~ 292 (307)
T PF05770_consen 216 IFFDFHQVSKLESSSDLSDLDKDPSQVEMPPDELVEKLAKELRRAL-GLTLFGFDVIRENGTGGRYYVIDINYF--PGYK 292 (307)
T ss_dssp CCCEGGGTCSTTTSSGGGSBSS-TTTTTS--HHHHHHHHHHHHHHH-T-SEEEEEEEEGCCT-SSEEEEEEEES----TT
T ss_pred cceeccccCCccccCchhhcccCcccccCCCHHHHHHHHHHHHHHh-CcceeeeEEEEEcCCCCcEEEEEeccC--CCcc
Confidence 111 110 0 01 112244467777777777 999999999986 44 68999999955 9998
Q ss_pred cchh
Q psy10366 203 ETQE 206 (340)
Q Consensus 203 g~~~ 206 (340)
+...
T Consensus 293 ~vp~ 296 (307)
T PF05770_consen 293 KVPD 296 (307)
T ss_dssp TSCT
T ss_pred CCCC
Confidence 8664
No 79
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.13 E-value=9.6e-10 Score=98.73 Aligned_cols=152 Identities=16% Similarity=0.249 Sum_probs=103.6
Q ss_pred HHHcCCCCCCcccccccCCCccc--------ccEEEe-cCCCCcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCC
Q psy10366 47 QRKLGKENFPLIDITYYPNFKEM--------YPVVFK-IGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSK 117 (340)
Q Consensus 47 l~~~G~~~~P~~~~t~~~~~~~~--------~PvVvK-p~~Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g 117 (340)
|+++| +|+.|+....+..++ ||+|+| +..|+-|+|..++++.++++.....+ ....+++|+||+..
T Consensus 1 l~~~g---ip~~~~~~i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~--~~~~~ilE~~v~f~ 75 (172)
T PF02222_consen 1 LDELG---IPTAPYATIDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQEL--GGGPCILEEFVPFD 75 (172)
T ss_dssp HHHTT-----B-EEEEESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHT--TTSCEEEEE---ES
T ss_pred CcccC---CCCCCeEEECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhc--CCCcEEEEeccCCc
Confidence 56788 797776655554433 999999 78899999999999999998888766 23445679999999
Q ss_pred CcEEEEEE---CCeEEEEEEE---ecCCCcccccCCceeeecCCChHHHHHHHHHHHHhCCCcEEEEeEEEcCCCC-eEE
Q psy10366 118 FDVHVQKI---GSNYKAFQRK---SISGNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGKDGK-EHI 190 (340)
Q Consensus 118 ~DIRv~VI---G~~v~A~~R~---s~~~~WktNvgga~~e~~~~~ee~~~~a~~aa~a~~GldiaGVDll~~~dG~-~~V 190 (340)
+.+=|+++ .|++..|--. -.++..+..+.-+... -.+.++.+++|.++++.+++.++.+|+++.+++|. .||
T Consensus 76 ~EiSvivaR~~~G~~~~yp~~en~~~~~il~~s~~Pa~i~-~~~~~~a~~ia~~i~~~l~~vGv~~VE~Fv~~~g~~v~v 154 (172)
T PF02222_consen 76 REISVIVARDQDGEIRFYPPVENVHRDGILHESIAPARIS-DEVEEEAKEIARKIAEALDYVGVLAVEFFVTKDGDEVLV 154 (172)
T ss_dssp EEEEEEEEEETTSEEEEEEEEEEEEETTEEEEEEESCSS--HHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTSTEEEE
T ss_pred EEEEEEEEEcCCCCEEEEcCceEEEECCEEEEEECCCCCC-HHHHHHHHHHHHHHHHHcCcEEEEEEEEEEecCCCEEEE
Confidence 99999998 4455432111 0133344333222111 11335668888899999999999999999999998 999
Q ss_pred EeecCCcccccccchh
Q psy10366 191 IEVNDSALSLMGETQE 206 (340)
Q Consensus 191 lEVN~s~~P~~~g~~~ 206 (340)
+|+-.- |+=.|+-.
T Consensus 155 NEiaPR--pHnSGh~T 168 (172)
T PF02222_consen 155 NEIAPR--PHNSGHWT 168 (172)
T ss_dssp EEEESS----GGGGGH
T ss_pred EeccCC--ccCcccEe
Confidence 999976 87777643
No 80
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=99.06 E-value=5.3e-09 Score=101.28 Aligned_cols=190 Identities=15% Similarity=0.266 Sum_probs=131.3
Q ss_pred HHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHH-HHHHcCCCCCCcccccccCCCccc--------ccEEEecCCCC
Q psy10366 10 KNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQ-LQRKLGKENFPLIDITYYPNFKEM--------YPVVFKIGHAH 80 (340)
Q Consensus 10 r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~-ll~~~G~~~~P~~~~t~~~~~~~~--------~PvVvKp~~Gs 80 (340)
.+-|..||..|..|+-++++...+-|+ -.+-+ .-.++| +|..+..|..+..++ ||+|+||.-+|
T Consensus 88 td~L~elE~~G~~VVP~ArAt~ltMnR----egiRrlAAeeLg---lpTs~Y~fa~s~~e~~~a~~~iGfPcvvKPvMSS 160 (394)
T COG0027 88 TDALVELEEEGYTVVPNARATKLTMNR----EGIRRLAAEELG---LPTSKYRFADSLEELRAAVEKIGFPCVVKPVMSS 160 (394)
T ss_pred HHHHHHHHhCCceEccchHHHHhhhcH----HHHHHHHHHHhC---CCCccccccccHHHHHHHHHHcCCCeeccccccc
Confidence 456888999999999999999999998 22211 245778 685444444444443 99999999999
Q ss_pred cccceEEecChhhHHHHHHHHHh----hCceEEeecCCCCCCcEEEEEE---CCe--EEE-EE-EEecCCCcccccCCce
Q psy10366 81 SGFGKVRVESNQDFQDMAGVVAV----ANTYCTTEPYIDSKFDVHVQKI---GSN--YKA-FQ-RKSISGNWKTNTGSAM 149 (340)
Q Consensus 81 ~G~Gv~lv~~~~~l~~i~~~l~~----~~~~~~vQefI~~g~DIRv~VI---G~~--v~A-~~-R~s~~~~WktNvgga~ 149 (340)
.|+|-..++++++++..-++-.. ...-+++++||+..+.|-++.| ++. +-+ +- |+ .+||++--
T Consensus 161 SGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd~EiTlLtvr~~~~~~~Fc~PIGHrq-~dgdY~ES----- 234 (394)
T COG0027 161 SGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKFDFEITLLTVRAVDGTGSFCAPIGHRQ-EDGDYRES----- 234 (394)
T ss_pred CCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEecceEEEEEEEEEEecCCCCcCCCccccc-CCCChhcc-----
Confidence 99999999999987776665432 1345668999998888887765 222 111 11 22 23332211
Q ss_pred eeecCCC----hHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHH
Q psy10366 150 LEQIPMT----DHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDL 215 (340)
Q Consensus 150 ~e~~~~~----ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~ 215 (340)
..|..++ ++.+.+|.++++++||.+++||.++...| +.|..||-.. |+=-|...-.-+++.+.
T Consensus 235 WQP~~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~gD-eV~FsEVSPR--PHDTGmVTLiSq~lsEF 301 (394)
T COG0027 235 WQPQEMSEAALEEAQSIAKRVTDALGGRGLFGVELFVKGD-EVIFSEVSPR--PHDTGMVTLISQDLSEF 301 (394)
T ss_pred cCccccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEeCC-EEEEeecCCC--CCCCceEEEEeccchHH
Confidence 1222333 34467788888999999999999999877 5789999987 87777554333444443
No 81
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=99.06 E-value=2.9e-09 Score=105.10 Aligned_cols=199 Identities=16% Similarity=0.175 Sum_probs=142.9
Q ss_pred HHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCcc-------c-ccEEEec-CCCC
Q psy10366 10 KNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKE-------M-YPVVFKI-GHAH 80 (340)
Q Consensus 10 r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~-------~-~PvVvKp-~~Gs 80 (340)
-..|..|+.. +++.-+++++.+..|| ...-+.|+++| +|+.|+.......+ + +|.|+|. -.|.
T Consensus 75 ~~aL~~l~~~-~~v~p~~~~l~~~qdR----~~eK~~l~~~G---i~va~~~~v~~~~el~~~~~~~g~p~VlKtr~gGY 146 (375)
T COG0026 75 AEALEKLAAS-VKVFPSPDALRIAQDR----LVEKQFLDKAG---LPVAPFQVVDSAEELDAAAADLGFPAVLKTRRGGY 146 (375)
T ss_pred HHHHHHHHhh-cCcCCCHHHHHHHhhH----HHHHHHHHHcC---CCCCCeEEeCCHHHHHHHHHHcCCceEEEeccccc
Confidence 3467778877 9999999999999999 44455689999 69767655544333 3 8999999 5678
Q ss_pred cccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEE---CCeEEEEEEE---ecCCCcccccCCceeeecC
Q psy10366 81 SGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKI---GSNYKAFQRK---SISGNWKTNTGSAMLEQIP 154 (340)
Q Consensus 81 ~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VI---G~~v~A~~R~---s~~~~WktNvgga~~e~~~ 154 (340)
-|+|..++++..+++............ ++++||+..+.|-|++. +|++.+|=-. -..|=.++|++-+.. +..
T Consensus 147 DGkGQ~~i~~~~~~~~~~~~~~~~~~~-vlE~fV~F~~EiSvi~aR~~~G~~~~yP~~eN~h~~gIl~~siaPa~i-~~~ 224 (375)
T COG0026 147 DGKGQWRIRSDADLELRAAGLAEGGVP-VLEEFVPFEREISVIVARSNDGEVAFYPVAENVHRNGILRTSIAPARI-PDD 224 (375)
T ss_pred cCCCeEEeeCcccchhhHhhhhccCce-eEEeecccceEEEEEEEEcCCCCEEEecccceeeecCEEEEEEecCcC-CHH
Confidence 999999999999887755554433334 68999999999999999 5555443111 012334444433211 112
Q ss_pred CChHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHHHhhcC
Q psy10366 155 MTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVL 225 (340)
Q Consensus 155 ~~ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i~~~~~ 225 (340)
+.++.+++|.+.++.++..++.||.+....||+.+|+|+=.- |+=.|+-.-++..+ +-+++++|
T Consensus 225 ~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~dg~llvNEiAPR--vHNSGH~T~~gc~~-----SQFEqHlR 288 (375)
T COG0026 225 LQAQAEEMAKKIAEELDYVGVLAVEFFVTPDGELLVNEIAPR--VHNSGHWTIDGCET-----SQFEQHLR 288 (375)
T ss_pred HHHHHHHHHHHHHHHcCceEEEEEEEEEECCCcEEEeeccCC--CCCccccchhhccc-----cHHHHHHH
Confidence 335668888888998888889999999999999999999976 88888776665554 44444444
No 82
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.05 E-value=6.3e-09 Score=103.07 Aligned_cols=193 Identities=16% Similarity=0.134 Sum_probs=118.4
Q ss_pred hCCCcccCChhHHHH--cCCchHHHHHHHHHHHHcCCCCCCcccccccCCCccc-ccEEEecCCCCc--ccceEEecChh
Q psy10366 18 IGGIPSINTLQGVYN--FQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM-YPVVFKIGHAHS--GFGKVRVESNQ 92 (340)
Q Consensus 18 ~~GvpviNs~~aI~~--~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~~-~PvVvKp~~Gs~--G~Gv~lv~~~~ 92 (340)
..-||.+=+=.-+.- =+|| ..+.++|+++| || +|.+|. +..++ +||+|||..|++ |+|+.+++|++
T Consensus 107 ~~~vp~fGnr~~lrwE~~~dK----k~~yk~L~~aG---I~-~Pk~~~-~p~eId~PVIVKp~~asG~~srG~f~a~s~e 177 (366)
T PRK13277 107 EFKVPIFGNRYLLRWEERTGE----KNYYWLLEKAG---IP-YPKLFK-DPEEIDRPVIVKLPEAKRRLERGFFTASSYE 177 (366)
T ss_pred cCCCCcccCHHHhhhhhccCH----HHHHHHHHHcC---CC-Cceeec-CccccCccEEEEECCCCCccccCeEeeCCHH
Confidence 366776655443332 3677 33334588999 68 566665 22355 999999999999 99999999999
Q ss_pred hHHHHHHHHHhhC-------ceEEeecCCC-CCCcEEEEEE--CCe--EEEEEEEec---CCCcc-------------cc
Q psy10366 93 DFQDMAGVVAVAN-------TYCTTEPYID-SKFDVHVQKI--GSN--YKAFQRKSI---SGNWK-------------TN 144 (340)
Q Consensus 93 ~l~~i~~~l~~~~-------~~~~vQefI~-~g~DIRv~VI--G~~--v~A~~R~s~---~~~Wk-------------tN 144 (340)
+|+.....+...+ ..+++||||. .-+.+.+|.. .|+ +.++-||-. .|..+ ++
T Consensus 178 El~~~a~~l~~~g~I~~~~~~~~iIQEyI~G~ey~~d~F~s~l~g~ve~l~id~R~esn~dg~~r~pa~~ql~~~~~p~~ 257 (366)
T PRK13277 178 DFYEKSEELIKAGVIDREDLKNARIEEYVIGAHFNFNYFYSPIRDRLELLGIDRRIQSNLDGFVRLPAPQQLKLNEEPRY 257 (366)
T ss_pred HHHHHHHhhhhcCcccccccccceeEeccCCCEEEEEEEEeccCCcEEEEEEeeccccccccccccChhhhhhcccCCce
Confidence 9888765543110 1225799998 5677778875 674 456665411 11111 11
Q ss_pred c-CCceeeecC----CChHHHHHHHHHHHHhC------CCcEEEEeEEEcCCCCeEEEeecCC---ccccc-c-cc----
Q psy10366 145 T-GSAMLEQIP----MTDHYKLWIDEVAELFG------GLDICALEIIVGKDGKEHIIEVNDS---ALSLM-G-ET---- 204 (340)
Q Consensus 145 v-gga~~e~~~----~~ee~~~~a~~aa~a~~------GldiaGVDll~~~dG~~~VlEVN~s---~~P~~-~-g~---- 204 (340)
+ .|- .++. +.+...+++.+.+++++ -..-..+|++.++||.++|+|||.- ..|.. . |.
T Consensus 258 vv~G~--~p~t~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~d~~~~V~EInpR~gGGtnl~~~aGs~y~~ 335 (366)
T PRK13277 258 IEVGH--EPATIRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTPDLDFVVYDVAPRIGGGTNVYMGVGSPYSK 335 (366)
T ss_pred EEEcC--ccccchHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcCCCcEEEEEEcCCcCCCccceeecCCCcHH
Confidence 1 111 1222 33455666666666642 1445789999999999999999953 11211 1 11
Q ss_pred ---h--hHHHHHHHHHHHHHHH
Q psy10366 205 ---Q--EEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 205 ---~--~~~~~~IA~~vi~~i~ 221 (340)
. -..++.||..|-..++
T Consensus 336 l~~~~~ms~GrRIa~Eik~a~~ 357 (366)
T PRK13277 336 LYFGKPMSTGRRIAMEIKRAIE 357 (366)
T ss_pred HHhcCccccCCcchHHHHHHHH
Confidence 1 2457777777765554
No 83
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=99.04 E-value=1.3e-08 Score=104.58 Aligned_cols=195 Identities=19% Similarity=0.222 Sum_probs=135.9
Q ss_pred HHHHHHHhCCCcccC-ChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc---------cc-ccEEEecCCC
Q psy10366 11 NLLLGFNIGGIPSIN-TLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK---------EM-YPVVFKIGHA 79 (340)
Q Consensus 11 ~vl~~le~~GvpviN-s~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~---------~~-~PvVvKp~~G 79 (340)
+..++++..|+-.|- |+.+|....|| ...-.+..++| +|+.|-+.-+... +. |||.||...|
T Consensus 90 ~FA~a~~~aGlvfIGP~~~aI~aMGdK----~~AK~l~~~Ag---Vp~VPG~~g~~qd~~~~~~~A~eiGyPVlIKAsaG 162 (645)
T COG4770 90 DFAQAVEDAGLVFIGPSAGAIRAMGDK----IAAKKLAAEAG---VPTVPGYHGPIQDAAELVAIAEEIGYPVLIKASAG 162 (645)
T ss_pred HHHHHHHHCCcEEECCCHHHHHHhccH----HHHHHHHHHcC---CCccCCCCCcccCHHHHHHHHHhcCCcEEEEeccC
Confidence 356778889988885 67899999999 44455678999 6877754433221 23 9999999999
Q ss_pred CcccceEEecChhhHHHHHHHHHh------hCceEEeecCCCCCCcEEEEEECCeE---E-EEEEEecCCCcccccCCce
Q psy10366 80 HSGFGKVRVESNQDFQDMAGVVAV------ANTYCTTEPYIDSKFDVHVQKIGSNY---K-AFQRKSISGNWKTNTGSAM 149 (340)
Q Consensus 80 s~G~Gv~lv~~~~~l~~i~~~l~~------~~~~~~vQefI~~g~DIRv~VIG~~v---~-A~~R~s~~~~WktNvgga~ 149 (340)
.+|+|..++++.+++.+..+.-.. .++-+++++|++.-|-|-++|+||+. + ...|.. .==|-| .-.
T Consensus 163 GGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD~HGNvv~LgERdC--SlQRRh--QKV 238 (645)
T COG4770 163 GGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDC--SLQRRH--QKV 238 (645)
T ss_pred CCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCceEEEEEEecCCCCEEEeecccc--chhhhc--chh
Confidence 999999999999988776654321 25678899999999999999998864 3 355532 111112 112
Q ss_pred eeec---CCChHH----HHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCccccccc--chhHHHHHHHHHHHH
Q psy10366 150 LEQI---PMTDHY----KLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGE--TQEEDRRFIVDLVIQ 218 (340)
Q Consensus 150 ~e~~---~~~ee~----~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g--~~~~~~~~IA~~vi~ 218 (340)
.|.. -++++. -+.|.++|++++=-.---|.+|.+.+|.+|++|+|-- =-.+. .|..|+.|+++..+.
T Consensus 239 IEEAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~~~f~FlEMNTR--LQVEHPVTE~iTGiDLVewqiR 314 (645)
T COG4770 239 IEEAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDADGNFYFLEMNTR--LQVEHPVTELITGIDLVEWQIR 314 (645)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcCCCcEEEEEeecc--eeccccchhhhhhhHHHHHHHH
Confidence 2222 255655 4566777888731122349999999999999999965 22222 456789999887764
No 84
>KOG0238|consensus
Probab=99.00 E-value=8.8e-09 Score=104.67 Aligned_cols=195 Identities=19% Similarity=0.198 Sum_probs=136.1
Q ss_pred HHHHHHHhCCCcccC-ChhHHHHcCCchHHHHHHHHHHHHcCCCCCCccccccc--CCCc-------cc-ccEEEecCCC
Q psy10366 11 NLLLGFNIGGIPSIN-TLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYY--PNFK-------EM-YPVVFKIGHA 79 (340)
Q Consensus 11 ~vl~~le~~GvpviN-s~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~--~~~~-------~~-~PvVvKp~~G 79 (340)
...+.++..|+-.|- ++++|.-..|| ...-++.+++| +|++|-..- ...+ ++ |||.||...|
T Consensus 86 ~Fae~c~~~Gi~FiGP~~~aIrdMG~K----~~sk~im~~Ag---Vp~vpG~~g~~qs~e~~~~~a~eIgyPvMiKa~~G 158 (670)
T KOG0238|consen 86 EFAELCEDAGITFIGPPPSAIRDMGDK----STSKQIMKAAG---VPLVPGYHGEDQSDEEAKKVAREIGYPVMIKATAG 158 (670)
T ss_pred HHHHHHHHcCCeEECCCHHHHHHhcch----HHHHHHHHhcC---CccccCcccccccHHHHHHHHHhcCCcEEEEeccC
Confidence 356678888988885 57899999999 67777899999 697764221 1111 23 9999999999
Q ss_pred CcccceEEecChhhHHHHHHHHHh------hCceEEeecCCCCCCcEEEEEECCeEE---E-EEEEecCCCcccccCCce
Q psy10366 80 HSGFGKVRVESNQDFQDMAGVVAV------ANTYCTTEPYIDSKFDVHVQKIGSNYK---A-FQRKSISGNWKTNTGSAM 149 (340)
Q Consensus 80 s~G~Gv~lv~~~~~l~~i~~~l~~------~~~~~~vQefI~~g~DIRv~VIG~~v~---A-~~R~s~~~~WktNvgga~ 149 (340)
.+|+|..++.++++|++....... .++-+++++||+.-|-|-|+|.|++.. . ..|.. .==|-|-. .
T Consensus 159 GGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD~hGnav~l~ERdC--SvQRRnQK--i 234 (670)
T KOG0238|consen 159 GGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLGERDC--SVQRRNQK--I 234 (670)
T ss_pred CCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEEEEecCCCcEEEeccccc--chhhhhhh--h
Confidence 999999999999999888775432 246678899999999999999999863 2 23421 11233321 1
Q ss_pred eee---cCCChHH----HHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCccccccc--chhHHHHHHHHHHHH
Q psy10366 150 LEQ---IPMTDHY----KLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGE--TQEEDRRFIVDLVIQ 218 (340)
Q Consensus 150 ~e~---~~~~ee~----~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g--~~~~~~~~IA~~vi~ 218 (340)
.|. ..++++. .+.|.+++++++=..---|.+|.++++.+|++|+|.. =-.+. .|-.++.|+++..+.
T Consensus 235 iEEaPap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~~~FyFmEmNTR--LQVEHPvTEmItg~DLVewqiR 310 (670)
T KOG0238|consen 235 IEEAPAPNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSKDNFYFMEMNTR--LQVEHPVTEMITGTDLVEWQIR 310 (670)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCCCcEEEEEeece--eeecccchhhccchHHHHHHHH
Confidence 111 2244443 5678888888853333459999999999999999964 12222 222467787776654
No 85
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=98.93 E-value=2.1e-08 Score=100.05 Aligned_cols=168 Identities=18% Similarity=0.222 Sum_probs=100.9
Q ss_pred HHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc--------cc-ccEEEecCCCCcccce
Q psy10366 16 FNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK--------EM-YPVVFKIGHAHSGFGK 85 (340)
Q Consensus 16 le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~--------~~-~PvVvKp~~Gs~G~Gv 85 (340)
|+..||+++ ++.++|++|.|| |.|.. .++++| +| +| .+..... .. ||+||||.+|.+|.|.
T Consensus 96 l~~~gV~vvgs~~eaI~iaeDr-~~fke---~m~eig---i~-~P-~~~~~~~~e~~~~~~~ig~PvIVrP~~~lGG~G~ 166 (400)
T COG0458 96 LEKYGVEVVGSDPEAIEIAEDK-KLFKE---AMREIG---IP-VP-SRIAHSVEEADEIADEIGYPVIVKPSFGLGGSGG 166 (400)
T ss_pred hhhcCCEEEecCHHHhhhhhhH-HHHHH---HHHHcC---CC-CC-ccccccHHHHhhhHhhcCCCEEEecCcCCCCCce
Confidence 455688865 889999999999 44444 589999 57 34 2222211 12 9999999999999999
Q ss_pred EEecChhhHHHHHHHHHhh--CceEEeecCCCCCCcEEEEEE-CC---eE-EEEEEEecCCCcccccC-Cce--eeecCC
Q psy10366 86 VRVESNQDFQDMAGVVAVA--NTYCTTEPYIDSKFDVHVQKI-GS---NY-KAFQRKSISGNWKTNTG-SAM--LEQIPM 155 (340)
Q Consensus 86 ~lv~~~~~l~~i~~~l~~~--~~~~~vQefI~~g~DIRv~VI-G~---~v-~A~~R~s~~~~WktNvg-ga~--~e~~~~ 155 (340)
..+.|+++|..+....... -..++++++|..+.-+-.-|+ +. .+ ++.|-.-.+ -.--++ +-. ..+.-.
T Consensus 167 ~i~~n~eel~~~~~~~l~~s~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~men~dp--~gvhtgdsi~vapaqtl~ 244 (400)
T COG0458 167 GIAYNEEELEEIIEEGLRASPVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCNMENLDP--MGVHTGDSITVAPAQTLT 244 (400)
T ss_pred eEEeCHHHHHHHHHhccccCccccceeeeeecCceEEEEEEEEeCCCCEEEEEeCCcccc--ccccccceeeeccccccc
Confidence 9999999999988764332 256788888885433333333 11 22 222211000 000111 111 112223
Q ss_pred ChHH---HHHHHHHHHHhCCCc-EEEEeEEEcCC-CCeEEEeecC
Q psy10366 156 TDHY---KLWIDEVAELFGGLD-ICALEIIVGKD-GKEHIIEVND 195 (340)
Q Consensus 156 ~ee~---~~~a~~aa~a~~Gld-iaGVDll~~~d-G~~~VlEVN~ 195 (340)
+.++ +..+.++.+.+ |++ =|=|++..+++ |++||+|||.
T Consensus 245 d~eyq~~r~~~~~iir~i-gi~G~~niQ~av~~~~~~~~viEvNp 288 (400)
T COG0458 245 DKEYQMLRDAAIKVIREI-GIEGGCNIQFAVDPGGGELYVIEINP 288 (400)
T ss_pred cHHHHHHHHHHHHHHHHh-cccCCCceeEEEcCCCceEEEEEecC
Confidence 3444 33445556655 333 14467777765 5899999994
No 86
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=98.87 E-value=2.3e-08 Score=97.35 Aligned_cols=167 Identities=17% Similarity=0.153 Sum_probs=101.0
Q ss_pred CChh-HHHHcCCchHHHHHHHHHHHHcCCCCCCccccccc--CCCcccccEEEecCCCCcc-cceEEecChhhHHHHHHH
Q psy10366 25 NTLQ-GVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYY--PNFKEMYPVVFKIGHAHSG-FGKVRVESNQDFQDMAGV 100 (340)
Q Consensus 25 Ns~~-aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~--~~~~~~~PvVvKp~~Gs~G-~Gv~lv~~~~~l~~i~~~ 100 (340)
|++. .++...+| .++...|..+| +| .|.++. +.....+++|+||..|++| .++...+..+.
T Consensus 110 n~P~~~v~~~snk----~~~~r~l~~lg---mp-~p~~~~~e~~~~gekt~IlKPv~GaGG~~el~~~~Ee~~------- 174 (389)
T COG2232 110 NEPEVKVVEASNK----LKFYRKLEVLG---MP-EPSEKKIEPLEEGEKTLILKPVSGAGGLVELVKFDEEDP------- 174 (389)
T ss_pred CCcHHHHHHHHHH----HhhhhhhhhcC---CC-CChhhhhhhhhhcceeeEEeeccCCCceeeecccccccC-------
Confidence 3566 89999999 44444588888 67 444432 1111228999999999999 55554444332
Q ss_pred HHhhCceEEeecCCCC----------CCcEEEEEECCeEEEEEEEec-CCCcccccCCceeeecCCChHHHHHHHHHHHH
Q psy10366 101 VAVANTYCTTEPYIDS----------KFDVHVQKIGSNYKAFQRKSI-SGNWKTNTGSAMLEQIPMTDHYKLWIDEVAEL 169 (340)
Q Consensus 101 l~~~~~~~~vQefI~~----------g~DIRv~VIG~~v~A~~R~s~-~~~WktNvgga~~e~~~~~ee~~~~a~~aa~a 169 (340)
-.-++.|+||.. |.|.+...++.+++.-.|-.. .=-++-|+. .-+....+|.+++|..+.+.
T Consensus 175 ----~~~~i~Qefi~G~p~Svs~is~g~~a~~la~N~QiI~~~~~~~~~f~Y~GNlT---P~~~~~~ee~e~la~elV~~ 247 (389)
T COG2232 175 ----PPGFIFQEFIEGRPVSVSFISNGSDALTLAVNDQIIDGLRGEYSQFVYKGNLT---PFPYEEVEEAERLAEELVEE 247 (389)
T ss_pred ----CcceehhhhcCCceeEEEEEecCcceEEEEEeeeeecccccccccceeccCcC---CCcchhhHHHHHHHHHHHHH
Confidence 123456888872 455555555555543111100 001223432 11222336778888888888
Q ss_pred hCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchh----HHHHHHHHHHHH
Q psy10366 170 FGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQE----EDRRFIVDLVIQ 218 (340)
Q Consensus 170 ~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~----~~~~~IA~~vi~ 218 (340)
++=++.-|||++..+.| +||+||| |=+.|.-+ .++.|..++=+.
T Consensus 248 lgL~GsnGVDfvl~d~g-pyViEVN----PR~qGt~e~iE~s~giNl~~lHi~ 295 (389)
T COG2232 248 LGLVGSNGVDFVLNDKG-PYVIEVN----PRIQGTLECIERSSGINLFRLHIQ 295 (389)
T ss_pred hccccccccceEeecCC-cEEEEec----CcccchHHHHHHhcCCCHHHHHHH
Confidence 86557789999998887 6999999 66666444 455565444433
No 87
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=98.85 E-value=2.3e-08 Score=95.45 Aligned_cols=144 Identities=15% Similarity=0.185 Sum_probs=69.4
Q ss_pred cEEEecCCCCcccceEEecChhhHHHHHHHHHhhCceEEeecCCC-C------CCcEEEEEE--C---CeE-E---EEEE
Q psy10366 71 PVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYID-S------KFDVHVQKI--G---SNY-K---AFQR 134 (340)
Q Consensus 71 PvVvKp~~Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~-~------g~DIRv~VI--G---~~v-~---A~~R 134 (340)
--|+||..|++|+|+.++++.+++..+ .......+++|+||+ + ++|||++|+ . -++ + ++.|
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~---~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvts~~pl~vy~y~~g~vR 143 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRF---SKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVTSLNPLRVYLYKEGYVR 143 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCC---HCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-T--T--EEEES--EEE
T ss_pred EEEEeccccCCCCCceecCCHHHHHHH---hhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEeeccceeeeeccCceEE
Confidence 389999999999999999998876654 112233445899998 3 579999988 3 122 1 4567
Q ss_pred EecCCCcc-------------cccC-Cce----------------------------eeecCCChHHHHHHHHHHHHh--
Q psy10366 135 KSISGNWK-------------TNTG-SAM----------------------------LEQIPMTDHYKLWIDEVAELF-- 170 (340)
Q Consensus 135 ~s~~~~Wk-------------tNvg-ga~----------------------------~e~~~~~ee~~~~a~~aa~a~-- 170 (340)
.+ +..|. ||.+ ... ...-.+-+++...+.++..+.
T Consensus 144 ~~-~~~Y~~~~~~~~~~~~HlTN~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~~~~~~~ 222 (292)
T PF03133_consen 144 FA-SEPYDPDLDDLSDRFAHLTNYSIQKKSESNEEDSNEENGNKWSLDQFEEYLKEGIDWEKIWEKICDIIIKTILAAEF 222 (292)
T ss_dssp E--SS------------------------------------EEEHHHHHHHCTTTSSS-STTTCHHHHHHHHHHHHHH-H
T ss_pred ec-cceeeccccccccccccccccccccccccccccccccccccchhhhhhhhcccCCCcccchhhhhHHHHHHhhhhhh
Confidence 64 33344 3322 000 001122344444444332222
Q ss_pred -----------CCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHHH
Q psy10366 171 -----------GGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 171 -----------~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i~ 221 (340)
...++.|+|+|.+.+++.+++|||.+ |.+...... ...+...|++-+-
T Consensus 223 ~~~~~~~~~~~~~Fel~G~DfmlD~~~kpwLLEvN~~--Psl~~~~~~-~~~~~~~li~d~l 281 (292)
T PF03133_consen 223 RSSQPNMPPRPNCFELFGFDFMLDEDLKPWLLEVNSN--PSLSTSTPV-DKELKPQLIDDLL 281 (292)
T ss_dssp HHHH--TTSSSEE-EEEEEEEEEBTTS-EEEEEEESS--------TTT-HHHHHHHHHHHTT
T ss_pred hhccccccccccccceeeeEEEecCCCeEEEeeCCCC--CCcccCCHh-HHHHHHHHHHHHh
Confidence 24689999999999999999999998 999654444 4445555544443
No 88
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.75 E-value=1.2e-07 Score=100.65 Aligned_cols=194 Identities=23% Similarity=0.234 Sum_probs=128.8
Q ss_pred HHHHHHhCCCcccC-ChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCC-----ccc-----ccEEEecCCCC
Q psy10366 12 LLLGFNIGGIPSIN-TLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF-----KEM-----YPVVFKIGHAH 80 (340)
Q Consensus 12 vl~~le~~GvpviN-s~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~-----~~~-----~PvVvKp~~Gs 80 (340)
..+.-...||-.|- +++.+.+..|| ...-.+-.++| +|++|-+--+.. +++ ||++||-..|.
T Consensus 97 fA~~c~eaGI~FIGP~~e~ld~~GdK----v~Ar~~A~~ag---vPvipgt~~~~~~~ee~~~fa~~~gyPvmiKA~~GG 169 (1149)
T COG1038 97 FARACAEAGITFIGPKPEVLDMLGDK----VKARNAAIKAG---VPVIPGTDGPIETIEEALEFAEEYGYPVMIKAAAGG 169 (1149)
T ss_pred HHHHHHHcCCEEeCCCHHHHHHhccH----HHHHHHHHHcC---CCccCCCCCCcccHHHHHHHHHhcCCcEEEEEccCC
Confidence 45566677887775 68999999999 44444566888 687776543322 122 99999999999
Q ss_pred cccceEEecChhhHHHHHHHHH------hhCceEEeecCCCCCCcEEEEEECCeE---E-EEEEEecCCCcccccCCcee
Q psy10366 81 SGFGKVRVESNQDFQDMAGVVA------VANTYCTTEPYIDSKFDVHVQKIGSNY---K-AFQRKSISGNWKTNTGSAML 150 (340)
Q Consensus 81 ~G~Gv~lv~~~~~l~~i~~~l~------~~~~~~~vQefI~~g~DIRv~VIG~~v---~-A~~R~s~~~~WktNvgga~~ 150 (340)
+|+|...|++++++.+..+.-. ..+.-+|++.||+.-+-|-|+++|++. + -+.|.. .==|-| .-..
T Consensus 170 GGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLgD~~GnvvHLfERDC--SvQRRh--QKVV 245 (1149)
T COG1038 170 GGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDC--SVQRRH--QKVV 245 (1149)
T ss_pred CccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcceeEEEEeecCCCCEEEEeeccc--chhhcc--ceeE
Confidence 9999999999998776654321 124667789999988899999999874 3 355642 111222 1122
Q ss_pred ee---cCCChHHH----HHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCccccccc--chhHHHHHHHHHHHH
Q psy10366 151 EQ---IPMTDHYK----LWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGE--TQEEDRRFIVDLVIQ 218 (340)
Q Consensus 151 e~---~~~~ee~~----~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g--~~~~~~~~IA~~vi~ 218 (340)
|. ..++++++ +.|.+.|+.++=..-.-|.+|.+.+|++|++|||.. =-.+. .|+.|+.||+..=+.
T Consensus 246 E~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvNPR--iQVEHTiTE~vTgiDIV~aQi~ 320 (1149)
T COG1038 246 EVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPR--IQVEHTITEEITGIDIVKAQIH 320 (1149)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCCCcEEEEEecCc--eeeEEeeeeeeechhHHHHHHH
Confidence 22 23555553 344455665532222359999999999999999943 12222 456789998765443
No 89
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=98.51 E-value=3e-06 Score=77.64 Aligned_cols=149 Identities=20% Similarity=0.357 Sum_probs=90.6
Q ss_pred HHHHHHHHcCCCCCCcccccc-cCCCcc-------c-ccE-EEecCCCCcccceEEecChhhHHHHHHHHHh------hC
Q psy10366 42 HLLQLQRKLGKENFPLIDITY-YPNFKE-------M-YPV-VFKIGHAHSGFGKVRVESNQDFQDMAGVVAV------AN 105 (340)
Q Consensus 42 ~l~~ll~~~G~~~~P~~~~t~-~~~~~~-------~-~Pv-VvKp~~Gs~G~Gv~lv~~~~~l~~i~~~l~~------~~ 105 (340)
..-++++++| || |+... +.+..+ + +|+ |||+-.=..|+||..++|.+++...+..+.. ..
T Consensus 5 faK~fm~~~~---IP-Ta~~~~f~~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~ 80 (194)
T PF01071_consen 5 FAKEFMKRYG---IP-TAKYKVFTDYEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAG 80 (194)
T ss_dssp HHHHHHHHTT----S-B--EEEESSHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCG
T ss_pred HHHHHHHHcC---CC-CCCeeEECCHHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCC
Confidence 3345688999 68 44322 222111 1 788 9999999999999999999976665554432 13
Q ss_pred ceEEeecCCC-CCCcEEEEEECCeEEE------EEEEecCCCcccccCC-ceeeecC-CChHHHHHHHH-----HHHHh-
Q psy10366 106 TYCTTEPYID-SKFDVHVQKIGSNYKA------FQRKSISGNWKTNTGS-AMLEQIP-MTDHYKLWIDE-----VAELF- 170 (340)
Q Consensus 106 ~~~~vQefI~-~g~DIRv~VIG~~v~A------~~R~s~~~~WktNvgg-a~~e~~~-~~ee~~~~a~~-----aa~a~- 170 (340)
.-+++|||+. .-.-+-+++-|..++- +.|.- .+|==-|+|| |..-+.+ ++++..+.+.+ ..+.+
T Consensus 81 ~~vvIEE~l~G~E~S~~a~~dG~~~~~lp~aqD~Kr~~-dgd~GpnTGGMGa~sp~p~~~~~~~~~i~~~I~~pt~~~l~ 159 (194)
T PF01071_consen 81 SKVVIEEFLEGEEVSLFALTDGKNFVPLPPAQDHKRLF-DGDTGPNTGGMGAYSPVPFITDELLEEIIEEILEPTLKGLK 159 (194)
T ss_dssp SSEEEEE---SEEEEEEEEEESSEEEEEEEBEEEEEEE-TTTEEEEESESEEEESTTTS-HHHHHHHHHHTHHHHHHHHH
T ss_pred CcEEEEeccCCeEEEEEEEEcCCeEEECcchhcccccc-CCCCCCCCCCccceeecccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5678999998 4667777777888742 34543 6777789974 4444554 35544333332 22211
Q ss_pred -CCCcEEEE---eEEEcCCCCeEEEeecCC
Q psy10366 171 -GGLDICAL---EIIVGKDGKEHIIEVNDS 196 (340)
Q Consensus 171 -~GldiaGV---Dll~~~dG~~~VlEVN~s 196 (340)
-|++|.|| .++.+++| ++|||-|..
T Consensus 160 ~eg~~y~GvLy~glMlt~~G-p~vlEfN~R 188 (194)
T PF01071_consen 160 KEGIPYRGVLYAGLMLTEDG-PKVLEFNVR 188 (194)
T ss_dssp HTT---EEEEEEEEEEETTE-EEEEEEESS
T ss_pred hcCCCcceeeeeeeEEeCCC-cEEEEEeCC
Confidence 27777775 77778887 799999965
No 90
>KOG1057|consensus
Probab=98.50 E-value=8.4e-08 Score=101.21 Aligned_cols=178 Identities=21% Similarity=0.279 Sum_probs=127.1
Q ss_pred HHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCccccccc-----CCC--------cc--------c-cc
Q psy10366 14 LGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYY-----PNF--------KE--------M-YP 71 (340)
Q Consensus 14 ~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~-----~~~--------~~--------~-~P 71 (340)
..-+...=+|||++.--|.-.|. ....++|...| || +|+.-+ |+. ++ | .|
T Consensus 109 aY~kLRnPFviNdL~mQyll~DR----R~Vy~iLe~~g---I~-~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KP 180 (1018)
T KOG1057|consen 109 AYAKLRNPFVINDLDMQYLLQDR----REVYSILEAEG---IP-LPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKP 180 (1018)
T ss_pred HHHHhcCCeeeccccHHHHHHHH----HHHHHHHHHcC---CC-CceeEeecCCCCChHHhhhhcCCCeEEEcceeccCC
Confidence 34455567899999999999999 56666799999 57 343221 111 11 1 79
Q ss_pred EEEecCCC--------------CcccceE-EecChhhHHHHHHHHHhhCceEEeecCCC-CCCcEEEEEECCeEE-EEEE
Q psy10366 72 VVFKIGHA--------------HSGFGKV-RVESNQDFQDMAGVVAVANTYCTTEPYID-SKFDVHVQKIGSNYK-AFQR 134 (340)
Q Consensus 72 vVvKp~~G--------------s~G~Gv~-lv~~~~~l~~i~~~l~~~~~~~~vQefI~-~g~DIRv~VIG~~v~-A~~R 134 (340)
.|=||++| .+|+-.+ +|.|+...-+-....+-.+.|++ +||++ .|.|++|+.||-.|. |--|
T Consensus 181 FVEKPVs~EDHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIY-EeFMptdgtDVKvYTVGp~YaHAEaR 259 (1018)
T KOG1057|consen 181 FVEKPVSAEDHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIY-EEFMPTDGTDVKVYTVGPDYAHAEAR 259 (1018)
T ss_pred cccCCCCcccccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceeh-hhhcCCCCccceEEeeCcchhhhhhc
Confidence 99999764 2222222 46666643333333344578886 99999 499999999999985 7778
Q ss_pred Eec--CCCcccccCCc-eeeecCCChHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccc
Q psy10366 135 KSI--SGNWKTNTGSA-MLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGET 204 (340)
Q Consensus 135 ~s~--~~~WktNvgga-~~e~~~~~ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~ 204 (340)
+|+ .|--+-|..|- .--++.++++.|.+|.+++-|| +--+||-|+|+. +|.-|||.||+- -+.+..
T Consensus 260 KSPvvDGkV~Rns~GKEvRYpv~Ls~~EK~iA~KVciAF-~Q~VCGFDLLRa-~G~SYVcDVNGf--SFVKns 328 (1018)
T KOG1057|consen 260 KSPVVDGKVERNSDGKEVRYPVILNSSEKQIARKVCIAF-KQTVCGFDLLRA-NGKSYVCDVNGF--SFVKNS 328 (1018)
T ss_pred cCccccceeeecCCCceeeceeecChhhHHHHhHHHhhc-cccccchHHhhc-CCceEEEeccce--eeeecc
Confidence 875 34455677654 3345789999999999999999 779999999987 788999999964 455543
No 91
>KOG0369|consensus
Probab=98.40 E-value=3.1e-06 Score=88.79 Aligned_cols=192 Identities=22% Similarity=0.267 Sum_probs=122.7
Q ss_pred HHHHHHhCCCcccC-ChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCC-----Cccc-----ccEEEecCCCC
Q psy10366 12 LLLGFNIGGIPSIN-TLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPN-----FKEM-----YPVVFKIGHAH 80 (340)
Q Consensus 12 vl~~le~~GvpviN-s~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~-----~~~~-----~PvVvKp~~Gs 80 (340)
..+.....|+..|- |++.|....|| +-++ .+--++| +|+.|-|--|. ..++ +|+|+|-..|.
T Consensus 123 FA~av~~AGi~fiGPspeVi~~mGDK--v~AR--~~Ai~ag---VpvVPGTpgPitt~~EA~eF~k~yG~PvI~KAAyGG 195 (1176)
T KOG0369|consen 123 FAQAVQDAGIRFIGPSPEVIDSMGDK--VAAR--AIAIEAG---VPVVPGTPGPITTVEEALEFVKEYGLPVIIKAAYGG 195 (1176)
T ss_pred HHHHHHhcCceEeCCCHHHHHHhhhH--HHHH--HHHHHcC---CCccCCCCCCcccHHHHHHHHHhcCCcEEEeecccC
Confidence 45566778888885 67899999999 3444 3455788 56655443332 1123 89999999999
Q ss_pred cccceEEecChhhHHHHHHH-----HHh-hCceEEeecCCCCCCcEEEEEECCeE---E-EEEEEecCCCcccccCCcee
Q psy10366 81 SGFGKVRVESNQDFQDMAGV-----VAV-ANTYCTTEPYIDSKFDVHVQKIGSNY---K-AFQRKSISGNWKTNTGSAML 150 (340)
Q Consensus 81 ~G~Gv~lv~~~~~l~~i~~~-----l~~-~~~~~~vQefI~~g~DIRv~VIG~~v---~-A~~R~s~~~~WktNvgga~~ 150 (340)
+|+|...+++-+++++-... +.. .+--++++.||+.-+-|-|+..|++. + -+.|.. +=.-| +.-.+
T Consensus 196 GGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllgD~~GNvvHLyERDC-SvQRR---HQKVV 271 (1176)
T KOG0369|consen 196 GGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLGDKHGNVVHLYERDC-SVQRR---HQKVV 271 (1176)
T ss_pred CCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcceeEEEEecccCCCEEEEeeccc-chhhh---hccee
Confidence 99999999998876554332 211 13335579999999999999999975 3 255532 11111 11111
Q ss_pred ee---cCCChHHH----HHHHHHHHHhCCCcEE-EEeEEEcCCCCeEEEeecCCccccccc--chhHHHHHHHHHHH
Q psy10366 151 EQ---IPMTDHYK----LWIDEVAELFGGLDIC-ALEIIVGKDGKEHIIEVNDSALSLMGE--TQEEDRRFIVDLVI 217 (340)
Q Consensus 151 e~---~~~~ee~~----~~a~~aa~a~~Gldia-GVDll~~~dG~~~VlEVN~s~~P~~~g--~~~~~~~~IA~~vi 217 (340)
|- -.++++.+ .-+.+.|+.+ |-.=+ -|++|.+..|++|++|||+. =-.+. .++-|+.||+..=+
T Consensus 272 EiAPA~~Lp~~vR~~~~~davklAk~v-gY~NAGTvEFLvD~~g~hYFIEvN~R--lQVEHTvTEEITgvDlV~aQi 345 (1176)
T KOG0369|consen 272 EIAPAKTLPPEVRDAILTDAVKLAKHV-GYENAGTVEFLVDQKGRHYFIEVNPR--LQVEHTVTEEITGVDLVQAQI 345 (1176)
T ss_pred EecccccCCHHHHHHHHHHHHHHHHHh-CcccCCceEEEEccCCCEEEEEecCc--eeeeeeeeeeeccchhhhhhh
Confidence 11 12444443 3345567777 43333 48999999999999999964 22222 34567777755444
No 92
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=98.31 E-value=4.4e-05 Score=76.99 Aligned_cols=202 Identities=17% Similarity=0.278 Sum_probs=128.7
Q ss_pred HHHHHHHHhCCCcccCChh-HHHHcCCchHHHHHHHHHHHHcCCCCCCcccccc-cCCCcc-------c-ccEEEecCCC
Q psy10366 10 KNLLLGFNIGGIPSINTLQ-GVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITY-YPNFKE-------M-YPVVFKIGHA 79 (340)
Q Consensus 10 r~vl~~le~~GvpviNs~~-aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~-~~~~~~-------~-~PvVvKp~~G 79 (340)
-.|.-.|+..|+|++=+.. +-.+=.+|.|+- .+++++| || |...- +.+.++ . .|+|||+--=
T Consensus 77 ~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK----~fm~k~~---IP-ta~y~~f~~~e~a~ayi~~~g~piVVKadGL 148 (428)
T COG0151 77 AGVVDALRAAGIPVFGPTKAAAQLEGSKAFAK----DFMKKYG---IP-TAEYEVFTDPEEAKAYIDEKGAPIVVKADGL 148 (428)
T ss_pred hhhHHHHHHCCCceeCcCHHHHHHHhhHHHHH----HHHHHcC---CC-cccccccCCHHHHHHHHHHcCCCEEEecccc
Confidence 4578889999999998775 455668995444 4589999 68 44221 112221 2 7999999888
Q ss_pred CcccceEEecChhhHHHHHHH-HHh----h-CceEEeecCCC-CCCcEEEEEECCeEEEE------EEEecCCCcccccC
Q psy10366 80 HSGFGKVRVESNQDFQDMAGV-VAV----A-NTYCTTEPYID-SKFDVHVQKIGSNYKAF------QRKSISGNWKTNTG 146 (340)
Q Consensus 80 s~G~Gv~lv~~~~~l~~i~~~-l~~----~-~~~~~vQefI~-~g~DIRv~VIG~~v~A~------~R~s~~~~WktNvg 146 (340)
..|+||..+.+.+++...+.- +.. . ..-++++||++ .-.-+-+|+-|..++-| .|- -.||==-|+|
T Consensus 149 aaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~GeE~S~~a~~DG~~v~p~p~aQDhKra-~dgD~GPNTG 227 (428)
T COG0151 149 AAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLDGEEFSLQAFVDGKTVIPMPTAQDHKRA-YDGDTGPNTG 227 (428)
T ss_pred cCCCCeEEcCCHHHHHHHHHHHHhhccccCCCCcEEEEecccceEEEEEEEEcCCeEEECccccccccc-cCCCCCCCCC
Confidence 999999999999987665543 322 1 24478999999 68899999888887543 343 2566667997
Q ss_pred C-ceeeec-CCChHH-HHH----HHHHHHHh--CCCcEEEE---eEEEcCCCCeEEEeecCCcccccccchhHH-----H
Q psy10366 147 S-AMLEQI-PMTDHY-KLW----IDEVAELF--GGLDICAL---EIIVGKDGKEHIIEVNDSALSLMGETQEED-----R 209 (340)
Q Consensus 147 g-a~~e~~-~~~ee~-~~~----a~~aa~a~--~GldiaGV---Dll~~~dG~~~VlEVN~s~~P~~~g~~~~~-----~ 209 (340)
| |..-+. -++++. +.. +....+.+ -|..|.|| =++.+++| ++|+|-|.. |++-|... .
T Consensus 228 GMGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~G-PkViEfN~R----FGDPEtq~vL~~l~ 302 (428)
T COG0151 228 GMGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADG-PKVIEFNAR----FGDPETQVVLPLLE 302 (428)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCC-cEEEEEecc----cCChhHHHHHHhcc
Confidence 4 333222 244443 222 22222211 16677776 35568898 699999975 55544211 2
Q ss_pred HHHHHHHHHHHHhhcC
Q psy10366 210 RFIVDLVIQKMQVSVL 225 (340)
Q Consensus 210 ~~IA~~vi~~i~~~~~ 225 (340)
-++++++..-+...+.
T Consensus 303 sdl~~~~~a~~~g~L~ 318 (428)
T COG0151 303 SDLVELLLAAVDGKLD 318 (428)
T ss_pred ccHHHHHHHHHhCCcc
Confidence 3556666655555444
No 93
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=98.16 E-value=1.6e-05 Score=77.13 Aligned_cols=180 Identities=14% Similarity=0.184 Sum_probs=107.6
Q ss_pred cCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc------cc-ccEEEecCCCC----cccc-eEEecCh
Q psy10366 24 INTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK------EM-YPVVFKIGHAH----SGFG-KVRVESN 91 (340)
Q Consensus 24 iNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~------~~-~PvVvKp~~Gs----~G~G-v~lv~~~ 91 (340)
+-++.-+.-..+||+.|.+ ...+| +| .|.||.-++. ++ ||+|+||..|. .++. .+++.|.
T Consensus 103 lp~w~~l~wlceKPllY~r----a~elg---l~-~P~Ty~v~S~~d~~~~el~FPvILKP~mgg~~~~~araKa~~a~d~ 174 (415)
T COG3919 103 LPDWALLRWLCEKPLLYNR----AEELG---LP-YPKTYLVNSEIDTLVDELTFPVILKPGMGGSVHFEARAKAFTAADN 174 (415)
T ss_pred CCcHHHHHHHhhCcHHHHH----HHHhC---CC-CcceEEecchhhhhhhheeeeEEecCCCCCcceeehhhheeeccCH
Confidence 3466677778899999988 56788 57 5677765543 23 99999995554 2222 3357888
Q ss_pred hhHHHHHHHH--HhhCceEEeecCCCC-CC---cEEEEEECCeEEEE--EEEecCCCcccccC--CceeeecCCChHHHH
Q psy10366 92 QDFQDMAGVV--AVANTYCTTEPYIDS-KF---DVHVQKIGSNYKAF--QRKSISGNWKTNTG--SAMLEQIPMTDHYKL 161 (340)
Q Consensus 92 ~~l~~i~~~l--~~~~~~~~vQefI~~-g~---DIRv~VIG~~v~A~--~R~s~~~~WktNvg--ga~~e~~~~~ee~~~ 161 (340)
++++....-- ....+.+++||||.. |. -+-.++-.|+-+|+ -|+.. ..-.-.| +..+|-+. +....+
T Consensus 175 ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr~r--qyPvdfgytst~vevvD-n~Q~i~ 251 (415)
T COG3919 175 EEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARRLR--QYPVDFGYTSTVVEVVD-NQQVIQ 251 (415)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcchhh--cCCcccccccEEEEecC-cHHHHH
Confidence 8776544321 234678889999994 43 44445556654442 23321 1112223 23333222 232233
Q ss_pred HHHHHHHHhCCCcEEEEeEEEc-CCCCeEEEeecCCccc-ccccchhHHHHHHHHHH
Q psy10366 162 WIDEVAELFGGLDICALEIIVG-KDGKEHIIEVNDSALS-LMGETQEEDRRFIVDLV 216 (340)
Q Consensus 162 ~a~~aa~a~~GldiaGVDll~~-~dG~~~VlEVN~s~~P-~~~g~~~~~~~~IA~~v 216 (340)
.|.+.-+-+.--.++-||+=.+ .||.+.++|||.. | -|-|+-...+.|+..++
T Consensus 252 aar~~L~si~htGlvevefK~D~RDGs~KlldvNpR--pw~wfgl~taaG~nLg~~L 306 (415)
T COG3919 252 AARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVNPR--PWRWFGLVTAAGYNLGRYL 306 (415)
T ss_pred HHHHHHHhhcccceEEEEEEecCCCCceeEEeecCC--CcceeeEEecccccccceE
Confidence 3333333333445688898777 7899999999976 5 35666666666665544
No 94
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=98.15 E-value=1.7e-05 Score=68.31 Aligned_cols=123 Identities=16% Similarity=0.184 Sum_probs=76.3
Q ss_pred cEEEecCCCCcccceEEecChhhHHHHHHHHHh-hCceEEeecCCCCCCcEEEEEECCeEEEEEEEecCCCcccccCCce
Q psy10366 71 PVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAV-ANTYCTTEPYIDSKFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAM 149 (340)
Q Consensus 71 PvVvKp~~Gs~G~Gv~lv~~~~~l~~i~~~l~~-~~~~~~vQefI~~g~DIRv~VIG~~v~A~~R~s~~~~WktNvgga~ 149 (340)
|+-|||....--+-=..+++.+++. ..-.. ...-++++|.++...-+|+||++|++++..++ .++|..++
T Consensus 3 ~~FiKP~~~~K~F~g~V~~~~~dl~---~~~~~~~~~~V~vSe~v~~~~E~R~fi~~g~vv~~s~Y--~~~~~~~~---- 73 (130)
T PF14243_consen 3 PVFIKPPDDDKSFTGRVFRSGEDLI---GFGSLDPDTPVLVSEVVEIESEWRCFIVDGEVVTGSPY--RGDWDLEP---- 73 (130)
T ss_pred CeEeCCCCCCCcceeEEEcchhhcc---ccCCCCCCceEEEeceEeeeeeEEEEEECCEEEEEeec--CCCcccCC----
Confidence 5667776633333222333333222 21112 24667889999999999999999999877665 34555543
Q ss_pred eeecCCChHHHHH-HHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHH
Q psy10366 150 LEQIPMTDHYKLW-IDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRF 211 (340)
Q Consensus 150 ~e~~~~~ee~~~~-a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~ 211 (340)
+++.... +..+++.......+.+|+-..++|+.+|+|+|+. ...|+..++...
T Consensus 74 ------~~~~~~~~~~~~~~~~~~p~~~vlDvg~~~~G~~~lVE~N~~---~~sG~Y~~d~~~ 127 (130)
T PF14243_consen 74 ------DPDVVAFAIQALAAAWTLPPAYVLDVGVTDDGGWALVEANDG---WSSGLYGCDPAR 127 (130)
T ss_pred ------CHHHHHHHHHHHHhcccCCCeEEEEEEEeCCCCEEEEEecCc---cccccccCCHHH
Confidence 2333233 3323322346789999999999999999999986 334444444443
No 95
>KOG0368|consensus
Probab=97.80 E-value=0.00018 Score=80.96 Aligned_cols=176 Identities=20% Similarity=0.248 Sum_probs=116.0
Q ss_pred HHHHHHhCCCcccCCh-hHHHHcCCchHHHHHHHHHHHHcCCCCCCccccccc-------CC-------C----------
Q psy10366 12 LLLGFNIGGIPSINTL-QGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYY-------PN-------F---------- 66 (340)
Q Consensus 12 vl~~le~~GvpviNs~-~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~-------~~-------~---------- 66 (340)
+-+.|...||-.|-++ .|+.-.+||. ...-+-..+| +|..|++-. .+ .
T Consensus 154 LPe~L~~~~IiFiGPP~~aM~sLGDKI----~STIvAQsa~---vPtlpWSGS~v~~~~~~~~~~~v~Vpedly~Kacv~ 226 (2196)
T KOG0368|consen 154 LPERLSANGIIFIGPPASAMRALGDKI----ASTIIAQSAG---VPTLPWSGSGVKVEHIEDKTNLVSVPEDLYEKACVR 226 (2196)
T ss_pred hHHHHHhcCcEEECCchHHHHHhcchH----HHHHHHHhcC---CCcccccCCcceeeeecccCCeEecCHHHhhhhhcC
Confidence 5567888888887665 5667779993 2222456788 676665421 00 0
Q ss_pred --cc-------c-ccEEEecCCCCcccceEEecChhhHHHHHHHHHh--hCceEEeecCCCCCCcEEEEEECCeEE---E
Q psy10366 67 --KE-------M-YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAV--ANTYCTTEPYIDSKFDVHVQKIGSNYK---A 131 (340)
Q Consensus 67 --~~-------~-~PvVvKp~~Gs~G~Gv~lv~~~~~l~~i~~~l~~--~~~~~~vQefI~~g~DIRv~VIG~~v~---A 131 (340)
++ . ||+.||--.|.+|+|+.+++|.++|..+..-... -+..+++=+..+..|-+-|+...|+|. +
T Consensus 227 ~~eegLeaae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~EvPGSPIFlMK~a~~ARHlEVQlLaDqYGn~Is 306 (2196)
T KOG0368|consen 227 NVEEGLEAAEKIGFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQNEVPGSPIFLMKLADQARHLEVQLLADQYGNVIS 306 (2196)
T ss_pred CHHHHHHHHHhcCCceEEEeccCCCCcceeeccchHHHHHHHHHHHhhCCCCceeeeecccCcceeeeehhhhhcCCEeE
Confidence 00 1 9999999999999999999999998887765432 245555556666789999999999873 3
Q ss_pred -EEEEecCCCcccc-c---CCceeeecCCChHHHHHHHHHHHHhCCCcEEEEeEEEcC-CCCeEEEeecC
Q psy10366 132 -FQRKSISGNWKTN-T---GSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGK-DGKEHIIEVND 195 (340)
Q Consensus 132 -~~R~s~~~~WktN-v---gga~~e~~~~~ee~~~~a~~aa~a~~GldiaGVDll~~~-dG~~~VlEVN~ 195 (340)
+-|.. +=.=|.- + +-+...+-+.=.++++.|.+-++.+|=.--.-|..|++. +|+||++|.|.
T Consensus 307 LfgRDC-SiQRRhQKIIEEAPatIap~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~~fyFLELNP 375 (2196)
T KOG0368|consen 307 LFGRDC-SIQRRHQKIIEEAPATIAPPETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDDGEYYFLELNP 375 (2196)
T ss_pred eecccc-hHHHHHHHHHhhCCcccCCHHHHHHHHHHHHHHHHhhcceecceEEEEEecCCCcEEEEecCc
Confidence 44532 0000000 0 112222222225668888888998843333459999985 89999999994
No 96
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=97.64 E-value=0.0034 Score=59.18 Aligned_cols=166 Identities=18% Similarity=0.087 Sum_probs=98.0
Q ss_pred HHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccC-CCc-----cc-ccEEEecCCCCcccceEEecChhhHHHHHHHH
Q psy10366 29 GVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYP-NFK-----EM-YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVV 101 (340)
Q Consensus 29 aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~-~~~-----~~-~PvVvKp~~Gs~G~Gv~lv~~~~~l~~i~~~l 101 (340)
-...|.||+-+-.. .++.+.+ -.++|..... +.. .+ .++|||+.+||++.++....+.-+...+...+
T Consensus 14 ~~~~~~DK~~VR~y----v~~~~g~-~~l~pll~v~~~~~~i~~~~Lp~~fViK~nhgsg~~~i~~dk~~~d~~~~~~~~ 88 (239)
T PF14305_consen 14 LFTKLADKYAVREY----VEEKIGE-EYLPPLLGVYDNPDDIDFDSLPDKFVIKPNHGSGSNIIVRDKSKLDIEEAKKKL 88 (239)
T ss_pred cceecchHHHHHHH----HHHhCCC-ceECceeecCCChhhhhhhcCCCCEEEEEecCCCcEEEEeCCcccCHHHHHHHH
Confidence 35679999544433 4444311 2333432221 112 22 67999999999999998876555444433322
Q ss_pred Hh--------------h---CceEEeecCCCC--C---CcEEEEEECCeEEEE----EEEec------CCCcc-cccCC-
Q psy10366 102 AV--------------A---NTYCTTEPYIDS--K---FDVHVQKIGSNYKAF----QRKSI------SGNWK-TNTGS- 147 (340)
Q Consensus 102 ~~--------------~---~~~~~vQefI~~--g---~DIRv~VIG~~v~A~----~R~s~------~~~Wk-tNvgg- 147 (340)
.. + ..-+++++|+.. + .|+++++.+|++..+ -|... +.+|. ..+.+
T Consensus 89 ~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~~r~~~~~~~~yd~dw~~l~~~~~ 168 (239)
T PF14305_consen 89 NRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDSDRFGNHKRNFYDRDWNRLPFRSD 168 (239)
T ss_pred HHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEeCCCCCeEEEEECcccCCCccccC
Confidence 11 0 233778999993 4 699999999986432 22110 22231 01111
Q ss_pred -ceeeecCCChHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccc
Q psy10366 148 -AMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMG 202 (340)
Q Consensus 148 -a~~e~~~~~ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~ 202 (340)
.....++.++.+++++.-|.++-.+.+|+=||+... +|+.|+-|.-=. |+-+
T Consensus 169 ~~~~~~~~kP~~l~emi~iA~~Ls~~f~fvRVDlY~~-~~~iyFGElTf~--p~~G 221 (239)
T PF14305_consen 169 YPPDEDIPKPKNLEEMIEIAEKLSKGFPFVRVDLYNV-DGKIYFGELTFT--PGAG 221 (239)
T ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCEEEEEEEEe-CCcEEEEeeecC--CCCc
Confidence 123345566666677665555555899999997776 567999999866 6544
No 97
>KOG2157|consensus
Probab=97.42 E-value=0.0009 Score=69.32 Aligned_cols=155 Identities=21% Similarity=0.244 Sum_probs=96.6
Q ss_pred ccEEEecCCCCcccceEEecChhhHHHHHHHH-----HhhCceEEeecCCC-C------CCcEEEEEECCeE---E----
Q psy10366 70 YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVV-----AVANTYCTTEPYID-S------KFDVHVQKIGSNY---K---- 130 (340)
Q Consensus 70 ~PvVvKp~~Gs~G~Gv~lv~~~~~l~~i~~~l-----~~~~~~~~vQefI~-~------g~DIRv~VIG~~v---~---- 130 (340)
..=|+||..-++|+|++++++.+++..+...+ .....++.+|.||+ + ++|||.+|+=... .
T Consensus 200 ~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~~plli~~~KfDlR~~vlvt~~~pl~~y~y 279 (497)
T KOG2157|consen 200 SWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYIDRPLLIGGHKFDLRQYVLVTHFDPLLLYRY 279 (497)
T ss_pred ceEEeccccccccceeEEecchhhhhhhhhcccccccccccccceeeeeccCccccCCceeeeeEEEEeecccchhheee
Confidence 67899999999999999999999877766421 11245667899998 3 5799999985532 2
Q ss_pred --EEEEEec-C-C---C-cc-----cccC----Cc---ee-----eec--CCC--------------------hHHHHHH
Q psy10366 131 --AFQRKSI-S-G---N-WK-----TNTG----SA---ML-----EQI--PMT--------------------DHYKLWI 163 (340)
Q Consensus 131 --A~~R~s~-~-~---~-Wk-----tNvg----ga---~~-----e~~--~~~--------------------ee~~~~a 163 (340)
++.|-+. + + + |. ||.. +. .. +-+ .++ ......+
T Consensus 280 reg~lRf~t~~y~~~~nl~n~~~HLtN~siqK~~~~~~~~~s~~~~~~~w~~~~~~~yl~~~~~~~~~~~~~i~~~~~~i 359 (497)
T KOG2157|consen 280 REGFLRFSTEPYGPLVNLQNMSVHLTNVSIQKLYPNYCHLSSLLSESCKWTLNSLLLYLRNIGSPCLELKLQIKPIITGI 359 (497)
T ss_pred ccceEEEEeccCcchhhhcccchhhhccccccCCCCcccccccccCCCcccHHHHHHHHHhhcCCcccccccchhhhhhh
Confidence 2345331 1 2 1 21 2321 00 00 000 000 0000001
Q ss_pred ---HHHHHHh-----CCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHHHhhcCC
Q psy10366 164 ---DEVAELF-----GGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLV 226 (340)
Q Consensus 164 ---~~aa~a~-----~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i~~~~~~ 226 (340)
..++... .-.+..|+|++.+++++.+++|||++ |-+.....++..-+..++.+-+...+-+
T Consensus 360 v~~v~~s~~~~~~~~n~FElyG~DfliD~~lkpwLiEiNss--P~~~~t~~~d~~l~~~l~~d~l~~v~~~ 428 (497)
T KOG2157|consen 360 VLSVFASATTVPSLANCFELYGFDFLIDEALKPWLIEINAS--PDLTQTTKNDARLKSKLIDDVLKVVVDP 428 (497)
T ss_pred hhhhhhhccccccccchhhhhCcceeecCCCCeEEEEeecC--CcccccchhhhHHHHHHHHHhhccccCc
Confidence 1111100 02367899999999999999999999 9999988888888777777766554443
No 98
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=97.37 E-value=0.0022 Score=64.18 Aligned_cols=148 Identities=16% Similarity=0.133 Sum_probs=85.7
Q ss_pred HHHHHHHHcCCCCCCcccccccCCCc-------cc--ccEEEecC--CCCccc--ceEEecChhhHHHHHHHHHhh----
Q psy10366 42 HLLQLQRKLGKENFPLIDITYYPNFK-------EM--YPVVFKIG--HAHSGF--GKVRVESNQDFQDMAGVVAVA---- 104 (340)
Q Consensus 42 ~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~--~PvVvKp~--~Gs~G~--Gv~lv~~~~~l~~i~~~l~~~---- 104 (340)
...++|+++| ||+++.....+.. ++ ||+|+|+. .|+.|. ||.+++|.+++.....-+...
T Consensus 7 ~aK~ll~~~G---Ipvp~~~~~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~~~ 83 (386)
T TIGR01016 7 QAKQIFAKYG---IPVPRGYVATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKELVT 83 (386)
T ss_pred HHHHHHHHcC---CCCCCceeeCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccceee
Confidence 3446799999 6855543332222 12 69999997 333443 899999999877766443210
Q ss_pred ------C---ceEEeecCCCCCCcEEEEEECCeE--EEEEEEe------------------------cCCCcccccCCce
Q psy10366 105 ------N---TYCTTEPYIDSKFDVHVQKIGSNY--KAFQRKS------------------------ISGNWKTNTGSAM 149 (340)
Q Consensus 105 ------~---~~~~vQefI~~g~DIRv~VIG~~v--~A~~R~s------------------------~~~~WktNvgga~ 149 (340)
+ ..+++|+|++.++-+-|-++.++. .-++.-+ ....|....+...
T Consensus 84 ~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p~~~~~~~~a~~~ 163 (386)
T TIGR01016 84 NQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPLTGLLPYQAREI 163 (386)
T ss_pred cccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCCceEEEEECCCCccHHHHhhhCccceEEEEcCCCcCCCHHHHHHH
Confidence 0 257899999888888887777642 1111111 0111211111011
Q ss_pred eeecCCC----hHHHHHHHHHHHHhCCCcEEEEeE---EEcCCCCeEEEe
Q psy10366 150 LEQIPMT----DHYKLWIDEVAELFGGLDICALEI---IVGKDGKEHIIE 192 (340)
Q Consensus 150 ~e~~~~~----ee~~~~a~~aa~a~~GldiaGVDl---l~~~dG~~~VlE 192 (340)
..+..++ +++.+++.+.++++...++..+|| +.+++|+.+.+.
T Consensus 164 ~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~lEINPl~v~~~g~~~a~D 213 (386)
T TIGR01016 164 AKKLGLEGELVKQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALD 213 (386)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHhCCceEEEeeeeEEcCCCCEEEEe
Confidence 1112222 456777888888887778888885 446677655443
No 99
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=97.07 E-value=0.0078 Score=60.22 Aligned_cols=84 Identities=15% Similarity=0.052 Sum_probs=57.1
Q ss_pred HHHHHHHHcCCCCCCcccccccCCCc-------cc--ccEEEecCCCCccc----ceEEecChhhHHHHHHHHHhh----
Q psy10366 42 HLLQLQRKLGKENFPLIDITYYPNFK-------EM--YPVVFKIGHAHSGF----GKVRVESNQDFQDMAGVVAVA---- 104 (340)
Q Consensus 42 ~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~--~PvVvKp~~Gs~G~----Gv~lv~~~~~l~~i~~~l~~~---- 104 (340)
...++|+++| ||+++.....+.+ ++ ||+|+||....+|+ ||.+.+|.+++......+...
T Consensus 7 ~ak~lL~~~g---Ipvp~~~~~~~~~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~~~ 83 (388)
T PRK00696 7 QAKELFAKYG---VPVPRGIVATTPEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTLVT 83 (388)
T ss_pred HHHHHHHHcC---CCCCCCeeeCCHHHHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhccceee
Confidence 3456799999 6855443332222 23 89999996434444 899999988877766554321
Q ss_pred ------C---ceEEeecCCCCCCcEEEEEECCe
Q psy10366 105 ------N---TYCTTEPYIDSKFDVHVQKIGSN 128 (340)
Q Consensus 105 ------~---~~~~vQefI~~g~DIRv~VIG~~ 128 (340)
+ ..+++|||++.++-+.+-+..+.
T Consensus 84 ~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~ 116 (388)
T PRK00696 84 HQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDR 116 (388)
T ss_pred eccCCCCCEEeEEEEEeccCCCceEEEEEEEcC
Confidence 1 13789999988888888888665
No 100
>KOG0237|consensus
Probab=96.48 E-value=0.051 Score=57.29 Aligned_cols=201 Identities=14% Similarity=0.225 Sum_probs=120.0
Q ss_pred HHHHHHHhCCCcccCCh-hHHHHcCCchHHHHHHHHHHHHcCCCCCCcccc-cccCCCc---cc------ccEEEecCCC
Q psy10366 11 NLLLGFNIGGIPSINTL-QGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDI-TYYPNFK---EM------YPVVFKIGHA 79 (340)
Q Consensus 11 ~vl~~le~~GvpviNs~-~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~-t~~~~~~---~~------~PvVvKp~~G 79 (340)
++.-.|...||||+-++ ++-.+=.+|.|.- ..++++| || |.. ..+.+.+ .+ .++|||---=
T Consensus 83 Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK----~fm~r~~---IP-TA~y~~ft~~e~a~sfi~~~~~~~~ViKAdGL 154 (788)
T KOG0237|consen 83 GLADVLRSAGIPCFGPSKQAAQLEASKNFSK----DFMHRHN---IP-TAKYKTFTDPEEAKSFIQSATDKALVIKADGL 154 (788)
T ss_pred hhhhhhhccCcceeCchHHHHHhhhhHHHHH----HHHHhcC---CC-cceeeeeCCHHHHHHHHHhCCCcceEEeeccc
Confidence 45667999999999765 5677778894443 3477899 68 332 1121211 22 5799999888
Q ss_pred CcccceEEecChhh-HHHHHHHHHh-----hCceEEeecCCC-CCCcEEEEEECCeEEEE------EEEecCCCcccccC
Q psy10366 80 HSGFGKVRVESNQD-FQDMAGVVAV-----ANTYCTTEPYID-SKFDVHVQKIGSNYKAF------QRKSISGNWKTNTG 146 (340)
Q Consensus 80 s~G~Gv~lv~~~~~-l~~i~~~l~~-----~~~~~~vQefI~-~g~DIRv~VIG~~v~A~------~R~s~~~~WktNvg 146 (340)
..|+||+...+.++ ++.+.+.+.. .+.-++++||++ +.--+=+|+-|-.+..| .|- -+||==-|+|
T Consensus 155 AAGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~tvViEE~LEGeEvS~laftDG~s~~~mp~aQDHKRl-~dgD~GpNTG 233 (788)
T KOG0237|consen 155 AAGKGVIVAKSKEEAFEAVDSILVKKVFGSAGKTVVIEELLEGEEVSFLAFTDGYSVRPLPPAQDHKRL-GDGDTGPNTG 233 (788)
T ss_pred ccCCceEeeccHHHHHHHHHHHHhhhhhccccceEehhhhcCcceEEEEEEecCcccccCCcccchhhh-cCCCCCCCCC
Confidence 89999999888875 5555555432 245677888888 34455556556556544 343 2667777997
Q ss_pred C-ceeeecC-CChHHHHHHH-----HHHH--HhCCCcEEEEe---EEEcCCCCeEEEeecCCcccccccchh-H----HH
Q psy10366 147 S-AMLEQIP-MTDHYKLWID-----EVAE--LFGGLDICALE---IIVGKDGKEHIIEVNDSALSLMGETQE-E----DR 209 (340)
Q Consensus 147 g-a~~e~~~-~~ee~~~~a~-----~aa~--a~~GldiaGVD---ll~~~dG~~~VlEVN~s~~P~~~g~~~-~----~~ 209 (340)
+ +..-|++ .++.+-+.+. ...+ +--|..|+||= ++..++| +.|+|-|-. |++-|. + -.
T Consensus 234 gmGaY~paPv~s~~ll~~v~~~I~~~Tv~Gm~~eg~~y~GVLfaGlMl~k~~-P~vLEfN~R----FGDPEtQv~l~lLe 308 (788)
T KOG0237|consen 234 GMGAYAPAPVASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFAGLMLTKDG-PKVLEFNVR----FGDPETQVLLPLLE 308 (788)
T ss_pred CccccccCCccCHHHHHHHHHHHhhHhhhHHHhcCCceeeEEeeeeEEecCC-ccEEEEecc----cCCchhhhhHHHHH
Confidence 4 3444443 2333322222 2211 11267777763 4557887 699999954 444332 1 12
Q ss_pred HHHHHHHHHHHHhhcC
Q psy10366 210 RFIVDLVIQKMQVSVL 225 (340)
Q Consensus 210 ~~IA~~vi~~i~~~~~ 225 (340)
-|+|+-+..-....+.
T Consensus 309 sDL~evi~a~~~~~L~ 324 (788)
T KOG0237|consen 309 SDLAEVILACCNGRLD 324 (788)
T ss_pred hHHHHHHHHHhhCCcc
Confidence 3666666655554444
No 101
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=96.00 E-value=0.043 Score=56.38 Aligned_cols=121 Identities=16% Similarity=0.264 Sum_probs=78.3
Q ss_pred ChHHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCC----------CCCCccccccc--C-------CCcc
Q psy10366 8 DHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGK----------ENFPLIDITYY--P-------NFKE 68 (340)
Q Consensus 8 ~~r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~----------~~~P~~~~t~~--~-------~~~~ 68 (340)
.-..++.+....-|+++||+.+ ....|| ..|+.|..=. .... +.|| +|.. + ...+
T Consensus 256 ~~~~li~Ay~~~av~~vgsfrs-~l~hnK-~iFaiL~d~~-~~~~Lt~ee~~~I~~HvP---~T~~l~~~~~~~~g~~~d 329 (445)
T PF14403_consen 256 EVQPLIQAYRDGAVCMVGSFRS-QLLHNK-IIFAILHDER-TTAFLTAEERAFIRRHVP---WTRLLTAGRTTYQGEDVD 329 (445)
T ss_pred cchHHHHHHhcCCeEEecchhh-hhhhhh-HHHHHhcChh-hcccCCHHHHHHHHHhCC---ceEEEcCccccccccchh
Confidence 3567899999999999999876 567888 4444432200 0010 1244 3322 1 1112
Q ss_pred c--------ccEEEecCCCCcccceEE--ecChhhHHHHHHHHHhhCceEEeecCCCC------------------CCcE
Q psy10366 69 M--------YPVVFKIGHAHSGFGKVR--VESNQDFQDMAGVVAVANTYCTTEPYIDS------------------KFDV 120 (340)
Q Consensus 69 ~--------~PvVvKp~~Gs~G~Gv~l--v~~~~~l~~i~~~l~~~~~~~~vQefI~~------------------g~DI 120 (340)
+ --+|+||..+++|.||.. --+.++|+.+++... .+.|+ +|||+.+ .+++
T Consensus 330 L~~~~~a~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~-~~~yi-lQe~v~~~~~~~~~~~dg~~~~~~~~~~~ 407 (445)
T PF14403_consen 330 LVEFAIANRDRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAA-REPYI-LQEYVRPPREPMPAFEDGEVVFEEYPYDS 407 (445)
T ss_pred HHHHHHhchhcEEeccccccCCCCeEECCcCCHHHHHHHHHHHh-cCCcE-EEEEecCCccccccccCCceeEeeeeeec
Confidence 2 579999999999999997 445567887776543 24555 6998873 1566
Q ss_pred EEEEECCeEE-EEEEEe
Q psy10366 121 HVQKIGSNYK-AFQRKS 136 (340)
Q Consensus 121 Rv~VIG~~v~-A~~R~s 136 (340)
=.|+-|+++. ++.|-+
T Consensus 408 g~fly~~~~~G~~tR~g 424 (445)
T PF14403_consen 408 GPFLYGGKFAGCYTRLG 424 (445)
T ss_pred cceeECCEEEEEEEEec
Confidence 6788888874 577764
No 102
>KOG0370|consensus
Probab=95.68 E-value=0.15 Score=56.54 Aligned_cols=194 Identities=16% Similarity=0.212 Sum_probs=121.8
Q ss_pred HHHHHHHHhCCCcccC-ChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCC---Cccc-----ccEEEecCCCC
Q psy10366 10 KNLLLGFNIGGIPSIN-TLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPN---FKEM-----YPVVFKIGHAH 80 (340)
Q Consensus 10 r~vl~~le~~GvpviN-s~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~---~~~~-----~PvVvKp~~Gs 80 (340)
.|+...|-..|+.++- |++.|-.+.|+ +.|+ ++|.+.|+ -.+++.-..+ .+++ ||++|.|-.--
T Consensus 1007 nNiA~~L~r~~~kilGTsP~~ID~AEnR-~kFS---~~Ld~i~v---~Qp~Wkelt~~~eA~~F~~~VgYP~lvRPSYVL 1079 (1435)
T KOG0370|consen 1007 NNIALKLHRNGVKILGTSPEMIDSAENR-FKFS---RMLDSIGV---DQPAWKELTSLEEAKKFAEKVGYPVLVRPSYVL 1079 (1435)
T ss_pred chhhhHhHhcCCeEecCChHhhhhhhhH-HHHH---HHHHHcCC---CchhhhhhccHHHHHHHHHhcCCceEeccccee
Confidence 4677778888888885 68999999999 4444 46889995 3223221211 1223 99999997777
Q ss_pred cccceEEecChhhHHHHHHHHH-hh-CceEEeecCCCCCCcEEEEE--ECCeEEEEEEEecCCCcccccC--Ccee----
Q psy10366 81 SGFGKVRVESNQDFQDMAGVVA-VA-NTYCTTEPYIDSKFDVHVQK--IGSNYKAFQRKSISGNWKTNTG--SAML---- 150 (340)
Q Consensus 81 ~G~Gv~lv~~~~~l~~i~~~l~-~~-~~~~~vQefI~~g~DIRv~V--IG~~v~A~~R~s~~~~WktNvg--ga~~---- 150 (340)
.|-....+.++++++..++.-. .. ...+++-+||+..+.|-|-. -+|+++++.- + +-.-|.| +|.+
T Consensus 1080 SGaAMnv~~~~~dl~~~L~~A~~vs~dhPVVisKfie~AkEidvDAVa~~G~~~~hai---S-EHvEnAGVHSGDAtlv~ 1155 (1435)
T KOG0370|consen 1080 SGAAMNVVYSESDLKSYLEQASAVSPDHPVVISKFIEGAKEIDVDAVASDGKVLVHAI---S-EHVENAGVHSGDATLVL 1155 (1435)
T ss_pred cchhhhhhhcHHHHHHHHHHHhhcCCCCCEEhHHhhcccceechhhhccCCeEEEEeh---h-hhhhcccccCCceeEeC
Confidence 7888888999999988877543 23 34567789999755554444 4777765432 1 1223543 4322
Q ss_pred eecCCC----hHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCC---cccccccchhHHHHHHHHH
Q psy10366 151 EQIPMT----DHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDS---ALSLMGETQEEDRRFIVDL 215 (340)
Q Consensus 151 e~~~~~----ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s---~~P~~~g~~~~~~~~IA~~ 215 (340)
.+..++ ++.++++.++++++.=-+=+-+-+|-. +....|+|.|-. ++|+..-.-..+-.++|-.
T Consensus 1156 Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k-~n~lkVIECN~RaSRSFPFvSKtlgvdfi~~At~ 1226 (1435)
T KOG0370|consen 1156 PPQDLSADTLERIKDIAAKVAKALKITGPFNMQIIAK-DNELKVIECNVRASRSFPFVSKTLGVDFIALATR 1226 (1435)
T ss_pred CchhcCHHHHHHHHHHHHHHHHHhcccCCceEEEEec-CCeEEEEEeeeeeeccccceehhcCchHHHHHHH
Confidence 223343 456777777788773222244676654 447889999964 5787765444444444433
No 103
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=94.40 E-value=0.23 Score=49.06 Aligned_cols=172 Identities=21% Similarity=0.248 Sum_probs=97.0
Q ss_pred HHHHHcCCCCCCcccccccCCCccc-ccEEEecCCCCcccceEEecChhhHHHHHHHHHhhC-------ceEEeecCCC-
Q psy10366 45 QLQRKLGKENFPLIDITYYPNFKEM-YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVAN-------TYCTTEPYID- 115 (340)
Q Consensus 45 ~ll~~~G~~~~P~~~~t~~~~~~~~-~PvVvKp~~Gs~G~Gv~lv~~~~~l~~i~~~l~~~~-------~~~~vQefI~- 115 (340)
.+|.++| +| .|..|- ..++. .||+||+...-+|+|-..+.|+++|....+-+.-.+ ....+||||-
T Consensus 130 ~lLekAg---i~-~P~~~~-~PeeIdr~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~G 204 (361)
T COG1759 130 KLLEKAG---LR-IPKKYK-SPEEIDRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVG 204 (361)
T ss_pred HHHHHcC---CC-CCcccC-ChHHcCCceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEeec
Confidence 3689999 46 455543 33455 899999999999999999999999888777543211 1244799987
Q ss_pred C--CCcEEEEEECCeE--EEEEEEecCCCccc------------ccC--CceeeecCCChHH------HHH---HHHHHH
Q psy10366 116 S--KFDVHVQKIGSNY--KAFQRKSISGNWKT------------NTG--SAMLEQIPMTDHY------KLW---IDEVAE 168 (340)
Q Consensus 116 ~--g~DIRv~VIG~~v--~A~~R~s~~~~Wkt------------Nvg--ga~~e~~~~~ee~------~~~---a~~aa~ 168 (340)
. ..+..--.|-+++ .+|-||- ..||-. |+- --.+--++++-+. -++ ..+|++
T Consensus 205 ~~f~~~yFyS~i~~~lEl~g~D~R~-Esn~Dg~~RlPa~~ql~l~~~ptyvv~Gn~p~vlRESLL~~vfe~ger~V~a~k 283 (361)
T COG1759 205 APFYFHYFYSPIKDRLELLGIDRRY-ESNLDGLVRLPAKDQLELNLEPTYVVVGNIPVVLRESLLPKVFEMGERFVEATK 283 (361)
T ss_pred cceeeeeeeccccCceeEeeeehee-eccchhhccCCHHHHhhcCCCceEEEECCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3 3455555566654 5666652 222221 110 0000001111111 111 122344
Q ss_pred HhCCCcEEE---EeEEEcCCCCeEEEeecCCcc----cccccch---------hHHHHHHHHHHHHHHHh
Q psy10366 169 LFGGLDICA---LEIIVGKDGKEHIIEVNDSAL----SLMGETQ---------EEDRRFIVDLVIQKMQV 222 (340)
Q Consensus 169 a~~GldiaG---VDll~~~dG~~~VlEVN~s~~----P~~~g~~---------~~~~~~IA~~vi~~i~~ 222 (340)
.+-+-++.| ..-+.++|=..+|+||-.-.. .++.|.+ -.+++.||..|-..++.
T Consensus 284 el~~PG~iGpFcLq~~~t~dl~~vVfevS~Ri~gGTNv~~~GspYs~l~~~~pms~GrRIA~EIk~A~e~ 353 (361)
T COG1759 284 ELVPPGIIGPFCLQTIVTDDLEFVVFEVSARIVGGTNVYMGGSPYSNLYWGEPMSTGRRIAREIKEAIEL 353 (361)
T ss_pred HhcCCCcccceeeeeeecCCccEEEEEEeccccCCcccccCCCcchhhhcCCCcchhhHHHHHHHHHHHh
Confidence 333434444 444556777788999865311 1222322 25788899888776654
No 104
>KOG2156|consensus
Probab=94.11 E-value=0.03 Score=58.21 Aligned_cols=94 Identities=22% Similarity=0.430 Sum_probs=62.3
Q ss_pred cCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCccccccc-CCCcc-c---------ccEEEecCCCCcccceEEecChh
Q psy10366 24 INTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYY-PNFKE-M---------YPVVFKIGHAHSGFGKVRVESNQ 92 (340)
Q Consensus 24 iNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~-~~~~~-~---------~PvVvKp~~Gs~G~Gv~lv~~~~ 92 (340)
+|.+-.-.+-+-|--++..+..-..+.|...|+-.|++|. |...+ + .-.||||...+.|.|+..++...
T Consensus 249 vNH~PGsF~IGRKD~lW~~~~~~~~rf~~kef~fmPrtyilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw~ 328 (662)
T KOG2156|consen 249 VNHFPGSFRIGRKDRLWRNILRNQVRFGKKEFGFMPRTYILPADREELRKYWEKNASRLWIVKPPASARGIGIRVINKWS 328 (662)
T ss_pred hccCCCccccccchHHHHHHHHHHHHhcccccCccceeeeccccHHHHHHHHhhCccccEEecCcccccCcceEeccchh
Confidence 4444443334444444455555567777667888888885 54432 2 23889999999999999999887
Q ss_pred hHHHHHHHHHhhCceEEeecCCC-C------CCcEEEEEE
Q psy10366 93 DFQDMAGVVAVANTYCTTEPYID-S------KFDVHVQKI 125 (340)
Q Consensus 93 ~l~~i~~~l~~~~~~~~vQefI~-~------g~DIRv~VI 125 (340)
++.. ..-+++|+||+ + ++|+|++|+
T Consensus 329 q~pk--------~rpLvvQ~yieRP~ling~KFDlrlYv~ 360 (662)
T KOG2156|consen 329 QFPK--------DRPLVVQKYIERPLLINGSKFDLRLYVV 360 (662)
T ss_pred hCCC--------cccHHHHHHhhcceeecCcceeEEEEEE
Confidence 6543 23344677777 2 689998876
No 105
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=91.17 E-value=0.71 Score=49.51 Aligned_cols=116 Identities=17% Similarity=0.077 Sum_probs=69.6
Q ss_pred HHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCccc--ccEEEecCCCCcccceEEe
Q psy10366 11 NLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM--YPVVFKIGHAHSGFGKVRV 88 (340)
Q Consensus 11 ~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~~--~PvVvKp~~Gs~G~Gv~lv 88 (340)
.++..|....+.+||++-++.. .+| +.|. +|=.+-.. =|..-.||+.....+ ...|.||++|-.|..|.++
T Consensus 474 ~L~~lL~~~~~~~iEP~Wk~ll-sNK----aiLp-lLW~l~p~-Hp~LLpayfe~d~~l~~~~yV~KPi~GREG~nV~i~ 546 (619)
T PRK10507 474 RLIDVLLRPEVLVFEPLWTVIP-GNK----AILP-VLWSLFPH-HRYLLDTDFTVNDELVKTGYAVKPIAGRCGSNIDLV 546 (619)
T ss_pred HHHHhhccCceEEEcccHHhhc-ccH----HHHH-HHHHhCCC-CcccccccccCCcccccCCeEeccCCCcCCCCEEEE
Confidence 3445566678999999998754 588 3333 33333211 132223444322223 3599999999999999999
Q ss_pred cChh-hHHHHHHHHHhhCceEEeecCCC-CCCc-----EEEEEECCeEEE-EEEE
Q psy10366 89 ESNQ-DFQDMAGVVAVANTYCTTEPYID-SKFD-----VHVQKIGSNYKA-FQRK 135 (340)
Q Consensus 89 ~~~~-~l~~i~~~l~~~~~~~~vQefI~-~g~D-----IRv~VIG~~v~A-~~R~ 135 (340)
++.. .+....... ..+.++ .|+|.+ +.+| |=+++|||++.+ ..|.
T Consensus 547 ~~~g~~~~~~~g~y-~~~~~I-yQ~~~~LP~f~~~~~~iGsw~vgg~~aG~giRe 599 (619)
T PRK10507 547 SHQEEVLDKTSGKF-AEQKNI-YQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRG 599 (619)
T ss_pred eCCCcEeeccCCCC-CCCCeE-EEEeccCcccCCCEEEEEEEEECCEEEEEEEec
Confidence 7632 111100100 113455 488999 6554 888999999876 4564
No 106
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=89.33 E-value=0.61 Score=43.70 Aligned_cols=90 Identities=14% Similarity=0.080 Sum_probs=48.1
Q ss_pred chHHHHHHHHHHHHcCCCCCCcccccccCCCcc-------c-ccEEEecCC-----CCcccceEE-ecChhhHHHHHHHH
Q psy10366 36 KPWVFAHLLQLQRKLGKENFPLIDITYYPNFKE-------M-YPVVFKIGH-----AHSGFGKVR-VESNQDFQDMAGVV 101 (340)
Q Consensus 36 K~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~-------~-~PvVvKp~~-----Gs~G~Gv~l-v~~~~~l~~i~~~l 101 (340)
..++......+|+.+| ||+++..+..+..+ + ||+|+|..+ =+---||.+ ++|++++....+.+
T Consensus 8 ~~L~e~e~~~lL~~yG---I~~~~~~~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l 84 (222)
T PF13549_consen 8 GWLTEAEAKELLAAYG---IPVPPTRLVTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERL 84 (222)
T ss_dssp -EE-HHHHHHHHHTTT---------EEESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHcC---cCCCCeeEeCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHH
Confidence 3456677788999999 68655555443332 3 999999943 233348888 88888655544433
Q ss_pred H----hh-----CceEEeecCCC-CCCcEEEEEECCe
Q psy10366 102 A----VA-----NTYCTTEPYID-SKFDVHVQKIGSN 128 (340)
Q Consensus 102 ~----~~-----~~~~~vQefI~-~g~DIRv~VIG~~ 128 (340)
. .. -.-+++|+.+. .|..+.|-+.-+.
T Consensus 85 ~~~~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp 121 (222)
T PF13549_consen 85 RERVAAHHPGARIDGVLVQEMAPSGGRELIVGVRRDP 121 (222)
T ss_dssp HHHHHHH-TT----EEEEEE------EEEEEEEEEET
T ss_pred HHHHHHhCCCCccceEEEEEcccCCcEEEEEEEEECC
Confidence 2 21 13467999998 7888888877554
No 107
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=87.93 E-value=1.8 Score=44.09 Aligned_cols=107 Identities=16% Similarity=0.093 Sum_probs=64.4
Q ss_pred hCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc---c---cc--cEEEecCCCCcccceEEec
Q psy10366 18 IGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK---E---MY--PVVFKIGHAHSGFGKVRVE 89 (340)
Q Consensus 18 ~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~---~---~~--PvVvKp~~Gs~G~Gv~lv~ 89 (340)
..++.+||++.++.. .+| +.|. +|=.+-. .=|..-.+|+.... . +. ..|.||++|-.|.+|.+++
T Consensus 255 ~~~~~~ieP~wk~ll-snK----alLa-lLW~l~p-~hp~LLpay~~~d~~~~~~~~~~~~~yV~KPi~gREG~nV~i~~ 327 (397)
T PHA02117 255 VSQTRFIEPAWKMML-SNK----GLLA-LLYERYP-DCPWLVPAYVEDDFDRENLFTLENPKYVSKPLLSREGNNIHIFE 327 (397)
T ss_pred hCCcEEechhHHhHh-ccH----HHHH-HHHHhcC-CCcccccccccccccccchhccccCCEEeccCCCcCCCCEEEEE
Confidence 468999999998754 678 3332 2333211 11332234442111 1 22 4999999999999999997
Q ss_pred ChhhHHHHHHHHHhh--CceEEeecCCC-CCC-----cEEEEEECCeEEE-EEEE
Q psy10366 90 SNQDFQDMAGVVAVA--NTYCTTEPYID-SKF-----DVHVQKIGSNYKA-FQRK 135 (340)
Q Consensus 90 ~~~~l~~i~~~l~~~--~~~~~vQefI~-~g~-----DIRv~VIG~~v~A-~~R~ 135 (340)
+-..+.. .-..+ +.++ .|+|++ +.+ =|=+++|||+..+ ..|.
T Consensus 328 ~g~~~~~---~~g~y~~~~~I-yQ~~~~Lp~f~g~~~~iGsw~vg~~~aGlgiRe 378 (397)
T PHA02117 328 YGGESED---TDGNYAEEPRV-VQQLIEWGRFDGCYPMIGVWMVGSEAAGLCIRE 378 (397)
T ss_pred CCeEEec---cCCCCCCCCeE-EEEccCCcccCCcEEEEEEEEECCEeeEEEEec
Confidence 7432221 11112 3444 588999 433 3778999999876 4564
No 108
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=87.42 E-value=1.8 Score=44.65 Aligned_cols=132 Identities=17% Similarity=0.265 Sum_probs=81.3
Q ss_pred HHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCC--CCCCcccccccCCC-ccc-------ccEEEecCCCC
Q psy10366 11 NLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGK--ENFPLIDITYYPNF-KEM-------YPVVFKIGHAH 80 (340)
Q Consensus 11 ~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~--~~~P~~~~t~~~~~-~~~-------~PvVvKp~~Gs 80 (340)
+++.++....|-+.|-+-+ -+..|| -+|..+=++.+.+.. +.+|.+| ||.+.. .++ --+|||+.+|+
T Consensus 300 GLveayr~G~VtiaNA~Gt-GV~ddk-a~~~y~P~~~~~ylge~~lL~nv~-T~~c~~~~el~~VL~~l~~lViK~~~~~ 376 (488)
T COG2308 300 GLVEAYRAGNVTIANALGT-GVADDK-ALYAYVPQMIEYYLGEEPLLPNVP-TYWCGEPDELEHVLANLSELVIKPVEGS 376 (488)
T ss_pred HHHHHHhcCcEEEecCCCc-Ccccch-hHHHHHHHHHHHHcccccccCCCC-eeecCCHHHHHHHHhchhhheEeeeccC
Confidence 4677777777777776543 678899 455566666666553 2344333 454332 222 56999999999
Q ss_pred cccceEE--ecChhhHHHHHHHHHhhCceEEeecCCC-------------C-CCcEEEEEECCeE------EEEEEEecC
Q psy10366 81 SGFGKVR--VESNQDFQDMAGVVAVANTYCTTEPYID-------------S-KFDVHVQKIGSNY------KAFQRKSIS 138 (340)
Q Consensus 81 ~G~Gv~l--v~~~~~l~~i~~~l~~~~~~~~vQefI~-------------~-g~DIRv~VIG~~v------~A~~R~s~~ 138 (340)
+|.|..+ .-++++..++.+-+......++-||-+. + .-|+|+|++-++- .+.-|....
T Consensus 377 gg~~~lvGpa~s~~e~a~~~~~i~a~p~~~IaQ~~~~lST~Pt~v~~~l~pr~vdlR~f~~~~~~~~~v~pGGLtRVal~ 456 (488)
T COG2308 377 GGYGMLVGPAASKAELAAFAERIKADPENYIAQPVLQLSTVPTFVDGGLAPRHVDLRPFALADRDGVQVMPGGLTRVALR 456 (488)
T ss_pred CCCcceeccccCHHHHHHHHHHHHhChhhhcccccccccccceEECCeeccccccceeEEEEcCCceEEcccceeeeeec
Confidence 8888775 5566677777776654333333566544 1 3599999995542 245565433
Q ss_pred -CCccccc
Q psy10366 139 -GNWKTNT 145 (340)
Q Consensus 139 -~~WktNv 145 (340)
|.--.|-
T Consensus 457 ~gs~vvn~ 464 (488)
T COG2308 457 EGSLVVNS 464 (488)
T ss_pred CCceeEEc
Confidence 5666676
No 109
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=83.20 E-value=4.3 Score=41.12 Aligned_cols=83 Identities=12% Similarity=-0.016 Sum_probs=50.4
Q ss_pred HHHHHHHcCCCCCCcccccccCCCc-------cc-c-cEEEec--CCCCccc--ceEEecChhhHHHHHHHHHhh-----
Q psy10366 43 LLQLQRKLGKENFPLIDITYYPNFK-------EM-Y-PVVFKI--GHAHSGF--GKVRVESNQDFQDMAGVVAVA----- 104 (340)
Q Consensus 43 l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~-PvVvKp--~~Gs~G~--Gv~lv~~~~~l~~i~~~l~~~----- 104 (340)
...+|+++| ||+++..+..+.+ ++ + |+|+|. ..||.|. ||.+..|.+++.....-+...
T Consensus 8 ak~lL~~yG---Ipvp~~~~~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~~~~ 84 (392)
T PRK14046 8 AKELLASFG---VAVPRGALAYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKLVTH 84 (392)
T ss_pred HHHHHHHcC---CCCCCceEECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchhhhh
Confidence 346799999 6854433322222 23 6 469995 3444443 577888888777666544321
Q ss_pred --------CceEEeecCCCCCCcEEEEEECCe
Q psy10366 105 --------NTYCTTEPYIDSKFDVHVQKIGSN 128 (340)
Q Consensus 105 --------~~~~~vQefI~~g~DIRv~VIG~~ 128 (340)
-..+++|++++.++-+.+-+.-++
T Consensus 85 ~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~ 116 (392)
T PRK14046 85 QTGPEGKPVQRVYVETADPIERELYLGFVLDR 116 (392)
T ss_pred ccCCCCCeeeeEEEEEecCCCcEEEEEEEECC
Confidence 124778988887777766666444
No 110
>KOG2158|consensus
Probab=81.53 E-value=2.8 Score=43.49 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=36.3
Q ss_pred ccEEEecCCCCcccceEEecChhhHHHHHHHHHhhCceEEeecCCC--------CCCcEEEEEECCe
Q psy10366 70 YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYID--------SKFDVHVQKIGSN 128 (340)
Q Consensus 70 ~PvVvKp~~Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~--------~g~DIRv~VIG~~ 128 (340)
.+.++||-.|.+|.|+.+++|..+....-.. .+|+||- .++|+||+++=.-
T Consensus 227 rtfivkpDsgaqg~giylisDir~~g~~Q~~--------~vQeyV~~pLli~dkyKfd~rvy~likS 285 (565)
T KOG2158|consen 227 RTFIVKPDSGAQGSGIYLISDIREKGEYQNK--------KVQEYVTYPLLISDKYKFDQRVYSLIKS 285 (565)
T ss_pred ccEEECCCCCCCCcceeeechhhhhhHHHHH--------HHHHHhcccccccccceeeeeeeeeeec
Confidence 7999999999999999999776654332221 1344443 3789999887543
No 111
>KOG0370|consensus
Probab=81.13 E-value=1.2 Score=49.77 Aligned_cols=173 Identities=17% Similarity=0.276 Sum_probs=102.7
Q ss_pred HHhCCCcccC-ChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccC-------CCccc-ccEEEecCCCCcccceE
Q psy10366 16 FNIGGIPSIN-TLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYP-------NFKEM-YPVVFKIGHAHSGFGKV 86 (340)
Q Consensus 16 le~~GvpviN-s~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~-------~~~~~-~PvVvKp~~Gs~G~Gv~ 86 (340)
|+..|+.++- +.++|..+.|+. .|++. +...+ .++.+..-.. ..+.+ |||++.-...-+|.|--
T Consensus 478 f~~~~vkvLgt~i~ti~ttedr~-lfa~a---m~ei~---e~ia~s~a~~sie~al~aae~l~ypvivRaayalgglgSg 550 (1435)
T KOG0370|consen 478 FAQYGVKVLGTPIQTIITTEDRD-LFARA---LNEIN---EKIAPSEAVSTIEEALEAAERLGYPVIVRAAYALGGLGSG 550 (1435)
T ss_pred ccccchhhhCCCcccceeeccHH-HHHHH---HHhhc---ccccchhhHhHHHHHHHHHHhcCcHHHHHHHHHhcCcccc
Confidence 4555666554 356788889984 44443 45555 2433321111 11233 99999999999999999
Q ss_pred EecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCeEE-EEEEEecCCC---cccccCCc-eee-ecCCChHHH
Q psy10366 87 RVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYK-AFQRKSISGN---WKTNTGSA-MLE-QIPMTDHYK 160 (340)
Q Consensus 87 lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~v~-A~~R~s~~~~---WktNvgga-~~e-~~~~~ee~~ 160 (340)
-++|+++|.++...-......+++++-++.+..+-.-|+-+.+- |.--. .-.| -...+|-. ... .-++++|..
T Consensus 551 fa~n~eeL~~l~~~a~a~s~QilvekSlkGwkevEyevvrDa~~nciTvc-nmen~DplgihtGdSiVvapsqtlsd~ey 629 (1435)
T KOG0370|consen 551 FANNEEELQDLAAQALALSPQILVEKSLKGWKEVEYEVVRDAYDNCITVC-NMENFDPLGIHTGDSIVVAPSQTLSDEEY 629 (1435)
T ss_pred ccccHHHHHHHHhhccccCceeeehhhhccccceEEEEEeccccchhhhc-CCcccCcceeeccceEEEeeccccChHHH
Confidence 99999999998875444456677777777778888888877652 11111 0111 12223322 222 245666654
Q ss_pred HHHHH----HHHHhCCCcEEEEeEEEcCCC-CeEEEeecCC
Q psy10366 161 LWIDE----VAELFGGLDICALEIIVGKDG-KEHIIEVNDS 196 (340)
Q Consensus 161 ~~a~~----aa~a~~GldiaGVDll~~~dG-~~~VlEVN~s 196 (340)
.+... +.+.+|..+=|-|-...++.. .|+|+|||+.
T Consensus 630 ~mlrttaikVirhlgvvGEcniQyaL~p~s~~y~IiEVNar 670 (1435)
T KOG0370|consen 630 QMLRTTAIKVIRHLGVVGECNIQYALNPYSLEYRIIEVNAR 670 (1435)
T ss_pred HHHHhcchhheeccCCcccccceeeecccceeEEEEEEEeE
Confidence 44443 344554444455665555443 5779999974
No 112
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=78.84 E-value=18 Score=36.79 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=57.1
Q ss_pred cc-EEEecCCCCcccceEEecChhhHHHHHHHHHhh---------CceEEeecCCCC-------CCcEEEEEECCeEE-E
Q psy10366 70 YP-VVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVA---------NTYCTTEPYIDS-------KFDVHVQKIGSNYK-A 131 (340)
Q Consensus 70 ~P-vVvKp~~Gs~G~Gv~lv~~~~~l~~i~~~l~~~---------~~~~~vQefI~~-------g~DIRv~VIG~~v~-A 131 (340)
.| ||||--.|+-|+||+-|.+.+++..+-.--+.. -.-+++||=|-. -..==|+.||..++ +
T Consensus 257 ~PfViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T~E~~~~avAEPVVYmid~~vvgg 336 (403)
T TIGR02049 257 QPYVIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYTFEMFNEAVAEPVVYMIGRTVTGG 336 (403)
T ss_pred CCeEEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcceeeeeCCcccCceEEEECCEEeEE
Confidence 57 999999999999999999999877766542211 144678987762 12445788888876 4
Q ss_pred EEEEecCCCccccc--CCceeeecC
Q psy10366 132 FQRKSISGNWKTNT--GSAMLEQIP 154 (340)
Q Consensus 132 ~~R~s~~~~WktNv--gga~~e~~~ 154 (340)
++|.-...+=--|+ -|...+++.
T Consensus 337 fYRvh~~Rg~dENLNapG~~F~pla 361 (403)
T TIGR02049 337 FYRVHTGRGVDENLNAPGMHFVPLS 361 (403)
T ss_pred EEEecCCCCCcccCCCCCCeeeecc
Confidence 78864333444555 255555543
No 113
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=78.19 E-value=2.1 Score=39.58 Aligned_cols=71 Identities=23% Similarity=0.255 Sum_probs=38.5
Q ss_pred HHHHHHcCCCCCCcccccccCC-Ccc-------c--ccEEEecCCCCcccc----eEEecChhhHHHHHHHHHhh-----
Q psy10366 44 LQLQRKLGKENFPLIDITYYPN-FKE-------M--YPVVFKIGHAHSGFG----KVRVESNQDFQDMAGVVAVA----- 104 (340)
Q Consensus 44 ~~ll~~~G~~~~P~~~~t~~~~-~~~-------~--~PvVvKp~~Gs~G~G----v~lv~~~~~l~~i~~~l~~~----- 104 (340)
.+||+++| ||+ |..+... .++ + .++|||+-.-.+|+| |.+++|++++..+.+-+...
T Consensus 8 K~ll~~~g---i~v-p~g~~a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~T~ 83 (202)
T PF08442_consen 8 KELLRKYG---IPV-PRGVVATSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLKTK 83 (202)
T ss_dssp HHHHHCTT--------SEEEESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE-T
T ss_pred HHHHHHcC---CCC-CCeeecCCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceEee
Confidence 46899999 684 4444322 222 2 468999955555554 56899999888877754321
Q ss_pred -----C---ceEEeecCCCCCC
Q psy10366 105 -----N---TYCTTEPYIDSKF 118 (340)
Q Consensus 105 -----~---~~~~vQefI~~g~ 118 (340)
+ ..++++|+++..+
T Consensus 84 Qtg~~G~~v~~vlvee~v~~~~ 105 (202)
T PF08442_consen 84 QTGPKGEKVNKVLVEEFVDIKR 105 (202)
T ss_dssp TSTTTEEEE--EEEEE---CCE
T ss_pred ecCCCCCEeeEEEEEecCccCc
Confidence 0 2356788776433
No 114
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=77.83 E-value=5.8 Score=40.24 Aligned_cols=84 Identities=14% Similarity=0.106 Sum_probs=48.3
Q ss_pred cc-EEEecCCCCcccceEEecChhhHHHHHHHHHh----h-----CceEEeecCCCC-----C--CcEEEEEECCeEE-E
Q psy10366 70 YP-VVFKIGHAHSGFGKVRVESNQDFQDMAGVVAV----A-----NTYCTTEPYIDS-----K--FDVHVQKIGSNYK-A 131 (340)
Q Consensus 70 ~P-vVvKp~~Gs~G~Gv~lv~~~~~l~~i~~~l~~----~-----~~~~~vQefI~~-----g--~DIRv~VIG~~v~-A 131 (340)
.| ||||--.|+-|+||+-|.+.+++..+-.--+. . -.-+++||=|.. + -.-=|+.||+.++ +
T Consensus 260 ~PfV~VKAD~GTYGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVYmid~~vvgg 339 (404)
T PF08886_consen 260 KPFVFVKADAGTYGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVSEVIIQEGVYTFERFNDAVAEPVVYMIDRYVVGG 339 (404)
T ss_dssp ---EEEEEE-GGG-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---EEEEEE-----EEETTEEEEEEEEEETTEEEEE
T ss_pred CceEEEEcCCCCCCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccceeEEecCcchhhhhCCccccceEEEECCEEEEE
Confidence 46 99999999999999999999987666543221 1 145678987773 1 3556888999986 5
Q ss_pred EEEEecCCCccccc--CCceeeec
Q psy10366 132 FQRKSISGNWKTNT--GSAMLEQI 153 (340)
Q Consensus 132 ~~R~s~~~~WktNv--gga~~e~~ 153 (340)
++|.-...+=--|+ -|...+++
T Consensus 340 fyRvh~~rg~deNLNapGm~F~pl 363 (404)
T PF08886_consen 340 FYRVHTERGVDENLNAPGMHFVPL 363 (404)
T ss_dssp EEEEES--STTTTTS--TT-EEEE
T ss_pred EEEecCCCCCccCCCCCCCEeeec
Confidence 88875333344455 25444443
No 115
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=76.32 E-value=5.1 Score=40.62 Aligned_cols=57 Identities=25% Similarity=0.265 Sum_probs=39.1
Q ss_pred HHHHHHHcCCCCCCcccccccCCCc--------cc--ccEEEecCCCCcccc----eEEecChhhHHHHHHHHHh
Q psy10366 43 LLQLQRKLGKENFPLIDITYYPNFK--------EM--YPVVFKIGHAHSGFG----KVRVESNQDFQDMAGVVAV 103 (340)
Q Consensus 43 l~~ll~~~G~~~~P~~~~t~~~~~~--------~~--~PvVvKp~~Gs~G~G----v~lv~~~~~l~~i~~~l~~ 103 (340)
..++++++| +|+ |..+..... ++ .|+|+|.-.-.+|+| |.+++|.+++....+.+..
T Consensus 8 aKelf~~~G---iPv-p~g~v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg 78 (387)
T COG0045 8 AKELFAKYG---IPV-PPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILG 78 (387)
T ss_pred HHHHHHHcC---CCC-CCceeeeCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhC
Confidence 356899999 684 445543322 22 599999966666664 5589999988887776544
No 116
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=69.21 E-value=11 Score=37.48 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=19.3
Q ss_pred CcEEEEeEEEcCCCCeEEEeecCC
Q psy10366 173 LDICALEIIVGKDGKEHIIEVNDS 196 (340)
Q Consensus 173 ldiaGVDll~~~dG~~~VlEVN~s 196 (340)
+.|+|+|+..++||+++|+|.|-.
T Consensus 68 ~~~~g~Dl~r~~dG~w~VleDn~~ 91 (330)
T PF04174_consen 68 LHFYGADLVRDPDGRWRVLEDNTR 91 (330)
T ss_dssp -SEEEEEEEE-SSS-EEEEEEE-S
T ss_pred EEEEEEeeeECCCCCEEEEEecCC
Confidence 689999999999999999999986
No 117
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=68.85 E-value=14 Score=36.15 Aligned_cols=84 Identities=10% Similarity=0.218 Sum_probs=53.6
Q ss_pred ceEEeecCCC--CCCcEEEEEECCeEEEEEEEecCCCcccccCCceeeecCCChHHHHHH-HHHHHHhCCCcEEEEeEEE
Q psy10366 106 TYCTTEPYID--SKFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWI-DEVAELFGGLDICALEIIV 182 (340)
Q Consensus 106 ~~~~vQefI~--~g~DIRv~VIG~~v~A~~R~s~~~~WktNvgga~~e~~~~~ee~~~~a-~~aa~a~~GldiaGVDll~ 182 (340)
.++++-+|.+ +.+-.||||-+++++|+-.|.. ..|. -+.. .+-.+-..+.+.. ......+ .++=+-+|+..
T Consensus 150 ~~LvLrkw~~l~p~~EFRcFV~~~~LiaISQr~~-~~~~-~L~~---~~~~I~~~I~~F~~~~I~~~~-~~~~~v~DVyi 223 (299)
T PF07065_consen 150 YELVLRKWVNLNPSMEFRCFVRNRKLIAISQRDL-NYYD-FLEE---LKEEIRSKIQEFFEEHIKPKF-PLDNYVFDVYI 223 (299)
T ss_pred eEEEEeccccCCccceEEEEEECCEEEEEecccc-cccH-HHHH---HHHHHHHHHHHHHHHHHHhhC-CCCCEEEEEEE
Confidence 4567788887 6899999999999999876531 1111 0000 0011222223333 2234455 67778999999
Q ss_pred cCC-CCeEEEeecC
Q psy10366 183 GKD-GKEHIIEVND 195 (340)
Q Consensus 183 ~~d-G~~~VlEVN~ 195 (340)
+++ ++.+|+|+|.
T Consensus 224 ~~~~~~v~LID~NP 237 (299)
T PF07065_consen 224 TRDKDKVWLIDFNP 237 (299)
T ss_pred cCCCCeEEEEEecC
Confidence 988 8889999994
No 118
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=66.58 E-value=6.1 Score=39.84 Aligned_cols=113 Identities=16% Similarity=0.069 Sum_probs=66.0
Q ss_pred HHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCccc---ccEEEecCCCCcccceEEec
Q psy10366 13 LLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM---YPVVFKIGHAHSGFGKVRVE 89 (340)
Q Consensus 13 l~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~~---~PvVvKp~~Gs~G~Gv~lv~ 89 (340)
...|+..++.++|++-.+. ..|| +.|-.|-++.. +=|..-.||+...... ---|+||++|-.|-+|.+++
T Consensus 244 ~~~l~~~~~~~lEPaWk~i-lsNK----~lLplLW~~fP--nHp~LL~t~F~~~~~~~~~~~yv~KPl~gREGaNv~i~~ 316 (387)
T COG0754 244 AQNLENARTIFLEPAWKSI-LSNK----ALLPLLWERFP--NHPNLLPTYFEPDDEEKLGESYVRKPLFGREGANVSIFE 316 (387)
T ss_pred HHHhcCCCcEEechhHHHH-hccc----cHHHHHHHhCC--CCcccccccCCCCccccchhhhhccccccccCCCeeEEe
Confidence 3458889999999988764 4678 33332233321 1232223455333222 23799999999999999998
Q ss_pred ChhhHHHHHHHHHhhCceEEeecCCC-CC----C-cEEEEEECCeEEEEE
Q psy10366 90 SNQDFQDMAGVVAVANTYCTTEPYID-SK----F-DVHVQKIGSNYKAFQ 133 (340)
Q Consensus 90 ~~~~l~~i~~~l~~~~~~~~vQefI~-~g----~-DIRv~VIG~~v~A~~ 133 (340)
+.....+..+--...+-++ .|+|.+ +. | =+=-.|||++..++.
T Consensus 317 ~~~~~~~~~~G~Yg~eg~I-yQe~~~Lpk~~~~Y~~vgSw~v~d~~cG~g 365 (387)
T COG0754 317 DAGKVLDKADGPYGEEGMI-YQEFYPLPKFGDSYYQVGSWVVGDEACGIG 365 (387)
T ss_pred cCCceeecCCCCccccchh-hhhhccCcccCCeeEEEEEEEECcccceee
Confidence 8553222221111123444 488988 42 2 233367788876654
No 119
>PLN02235 ATP citrate (pro-S)-lyase
Probab=62.21 E-value=22 Score=36.70 Aligned_cols=46 Identities=13% Similarity=0.040 Sum_probs=32.0
Q ss_pred cEEEecCCCCcccc----eEEecChhhHHHHHHHHHhhC----------ceEEeecCCCC
Q psy10366 71 PVVFKIGHAHSGFG----KVRVESNQDFQDMAGVVAVAN----------TYCTTEPYIDS 116 (340)
Q Consensus 71 PvVvKp~~Gs~G~G----v~lv~~~~~l~~i~~~l~~~~----------~~~~vQefI~~ 116 (340)
++|||+-.-.+|+| |.+++|++++..+.+-+.... ..++++|+++-
T Consensus 54 ~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a~~~Lg~~l~t~g~~G~v~~vLVEe~v~i 113 (423)
T PLN02235 54 KLVVKPDMLFGKRGKSGLVALNLDLAQVATFVKERLGKEVEMGGCKGPITTFIVEPFVPH 113 (423)
T ss_pred cEEEEcccccCCCcccCceEEeCCHHHHHHHHHHHhCCceEecCCCccEeEEEEEecCCC
Confidence 57999977777776 457999999888877554332 24566777663
No 120
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=59.09 E-value=26 Score=35.14 Aligned_cols=97 Identities=16% Similarity=0.238 Sum_probs=65.3
Q ss_pred ccEEEecCCCCcccceEEecChhhHHHHHHHHHhh---CceEEeecCCCC--CCcEEEEEECCeEEEEE-EEe-cCCCcc
Q psy10366 70 YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVA---NTYCTTEPYIDS--KFDVHVQKIGSNYKAFQ-RKS-ISGNWK 142 (340)
Q Consensus 70 ~PvVvKp~~Gs~G~Gv~lv~~~~~l~~i~~~l~~~---~~~~~vQefI~~--g~DIRv~VIG~~v~A~~-R~s-~~~~Wk 142 (340)
.||=+||..+.+|+|-.++.|.++|+..+..+.-. ..-+++++=++. -+-+=-..|++.+++|. .+. ..+|==
T Consensus 137 G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~~~~~~l~~~GlVLE~~L~~~~T~SVGqv~v~g~~~SY~GtQ~lT~dn~G 216 (355)
T PF11379_consen 137 GPVRLKPVHATGGRGQQVVADADELDAALAALDDAELARHGLVLEEDLEEVVTYSVGQVRVAGLVASYYGTQRLTRDNQG 216 (355)
T ss_pred CCeeeccCcccCCCCceEecCHHHHHHHHHcCCHHHHHhCCEEEecccCCCceeeEEEEEECCEEEEEeeEeecccCCCC
Confidence 89999999999999999999999999988765421 233556877773 67777777888877654 221 111111
Q ss_pred ccc-CC----------ceeeecCCChHHHHHHHHH
Q psy10366 143 TNT-GS----------AMLEQIPMTDHYKLWIDEV 166 (340)
Q Consensus 143 tNv-gg----------a~~e~~~~~ee~~~~a~~a 166 (340)
..+ || ..+...++++..+..+..|
T Consensus 217 ~~VYGGS~L~VvRGg~~aLl~l~l~~~~r~AV~qA 251 (355)
T PF11379_consen 217 EEVYGGSDLVVVRGGFDALLALDLPDDVRLAVEQA 251 (355)
T ss_pred CEeecCceEEEEeCCHHHHhcCCCCHHHHHHHHHH
Confidence 112 22 1334567888887777665
No 121
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=58.53 E-value=30 Score=35.63 Aligned_cols=55 Identities=22% Similarity=0.233 Sum_probs=31.6
Q ss_pred HHHHHHHHcCCCCCCcccccccCCCc-------cc----ccEEEecC--CCCccc---------ceEEecChhhHHHHHH
Q psy10366 42 HLLQLQRKLGKENFPLIDITYYPNFK-------EM----YPVVFKIG--HAHSGF---------GKVRVESNQDFQDMAG 99 (340)
Q Consensus 42 ~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~----~PvVvKp~--~Gs~G~---------Gv~lv~~~~~l~~i~~ 99 (340)
+..++|+++| ||+++.......+ ++ +|+|+|.. .|..|+ ||.++++ +++....+
T Consensus 34 qaK~LL~~~G---Ipvp~~~va~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-eea~~aa~ 109 (422)
T PLN00124 34 QGAELMSKYG---VNVPKGAAASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-DKAEELAG 109 (422)
T ss_pred HHHHHHHHcC---CCCCCceeeCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-HHHHHHHH
Confidence 4456899999 6854433222221 22 58999997 444442 2445655 66555554
Q ss_pred H
Q psy10366 100 V 100 (340)
Q Consensus 100 ~ 100 (340)
-
T Consensus 110 ~ 110 (422)
T PLN00124 110 K 110 (422)
T ss_pred H
Confidence 3
No 122
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=56.50 E-value=9.9 Score=37.83 Aligned_cols=91 Identities=18% Similarity=0.194 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHH-cCC-CCCCcccccccCCCcc-------cccEEEecCCCC
Q psy10366 10 KNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRK-LGK-ENFPLIDITYYPNFKE-------MYPVVFKIGHAH 80 (340)
Q Consensus 10 r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~-~G~-~~~P~~~~t~~~~~~~-------~~PvVvKp~~Gs 80 (340)
-+++++....+|-+.|.+- --...||.+ +..+-++.+. +|- .-+|-+|.+++-..++ +--+||||..|+
T Consensus 221 ~GL~~A~r~G~V~iaNa~G-~gv~edkal-~~~lp~~~r~~LgeellL~~VpT~~cg~~~~~~~Vl~~l~~lvvKp~~g~ 298 (330)
T PF04174_consen 221 PGLLEAYRAGNVVIANAPG-SGVAEDKAL-YAFLPRMIRYYLGEELLLPNVPTWWCGDPEDREYVLANLDELVVKPADGY 298 (330)
T ss_dssp TTHHHHHHTTS-EEES-TT-THHHHSTTT-GGGHHHHHHHHH-S--SSEE---EETTSHHHHHHHHHSGGGEEEEE----
T ss_pred HHHHHHHHhCCEEEECCCc-cchhcchhH-HHHhHHHHHHHcCCCcccCCCCcEeCCCHHHHHHHHhchhhcEEEecCCC
Confidence 3688999999999996554 456677732 2222332222 342 1234344433322121 167999999999
Q ss_pred cccceEEecChh-hHHHHHHHHH
Q psy10366 81 SGFGKVRVESNQ-DFQDMAGVVA 102 (340)
Q Consensus 81 ~G~Gv~lv~~~~-~l~~i~~~l~ 102 (340)
+|.|+..-.+.. +.+.+...+.
T Consensus 299 gg~~~~~G~~~s~e~~~~~~~I~ 321 (330)
T PF04174_consen 299 GGKGVYIGPKLSAERRALRAEIL 321 (330)
T ss_dssp ----EEEGGG--HHHHHHHHHHH
T ss_pred CCCcceeCCcCCHHHHHHHHHHH
Confidence 999998744433 4444444443
No 123
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=47.51 E-value=20 Score=35.41 Aligned_cols=115 Identities=14% Similarity=0.062 Sum_probs=62.9
Q ss_pred HHHHHHHHhCCC--cccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCcc-------c-ccEEEecCCC
Q psy10366 10 KNLLLGFNIGGI--PSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKE-------M-YPVVFKIGHA 79 (340)
Q Consensus 10 r~vl~~le~~Gv--pviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~-------~-~PvVvKp~~G 79 (340)
++++++|...|. ..+-.-.+...+.+|.++... +.+.++ .||.. ...+-.... + +|+|.||..|
T Consensus 24 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v-vfp~l-hG~~gEDg~iqg~le~~giPyvg~gv~~ 97 (317)
T COG1181 24 KAVLRALKGFGYDVTPVDITEAGLWMLDKEVTKRV----LQKADV-VFPVL-HGPYGEDGTIQGLLELLGIPYVGKGVLA 97 (317)
T ss_pred HHHHHHHhhcCceeEEEeccccceEEeccccchhh----cccCCE-EEEeC-CCCCCCCchHHHHHHHhCCCEecCchhh
Confidence 456777766554 223333377778888655533 566663 34421 111212221 1 8999999999
Q ss_pred CcccceEEecChhhHHHHHHHHHhh-CceEEeec-----C-CC---CCCcEEEEEECCeEEE-EEEE
Q psy10366 80 HSGFGKVRVESNQDFQDMAGVVAVA-NTYCTTEP-----Y-ID---SKFDVHVQKIGSNYKA-FQRK 135 (340)
Q Consensus 80 s~G~Gv~lv~~~~~l~~i~~~l~~~-~~~~~vQe-----f-I~---~g~DIRv~VIG~~v~A-~~R~ 135 (340)
|.|.|... ..+.+....... -.|+.+.+ . ++ .+.|.|+||++++.++ +.|.
T Consensus 98 Sa~~mdk~-----~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~ 159 (317)
T COG1181 98 SAGAMDKI-----VTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGRS 159 (317)
T ss_pred hhhcccHH-----HHHHHHHHCCCCccceeeeecccchhHHHHHhhcccCCCEEEEcCCccceeeEE
Confidence 99999732 222222222221 12333321 1 11 3789999999999864 5553
No 124
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=47.06 E-value=12 Score=38.68 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=22.1
Q ss_pred CcEEEEeEEEcCCCCeEEEeecCC
Q psy10366 173 LDICALEIIVGKDGKEHIIEVNDS 196 (340)
Q Consensus 173 ldiaGVDll~~~dG~~~VlEVN~s 196 (340)
+.+||+|++++.||.++|+|=|--
T Consensus 145 ~H~~g~dl~R~~dG~~~VLeDn~r 168 (488)
T COG2308 145 LHVCGTDLIRDPDGNFQVLEDNLR 168 (488)
T ss_pred EEEeeeheeECCCCCEEEecccCc
Confidence 578999999999999999999974
No 125
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=32.27 E-value=49 Score=23.18 Aligned_cols=20 Identities=25% Similarity=0.689 Sum_probs=18.7
Q ss_pred CCChhHHHHHHHHhhhhccc
Q psy10366 319 GEDSEDTMKNLRKTFAGIFG 338 (340)
Q Consensus 319 ~~~~~dtm~~lrktfagifg 338 (340)
-.|=||-+++|.+-|.++||
T Consensus 20 PPDLdel~r~l~~kl~~~fg 39 (42)
T PF12221_consen 20 PPDLDELFRKLQDKLGGLFG 39 (42)
T ss_pred CCCHHHHHHHHHHHHhcccC
Confidence 47899999999999999998
No 126
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=31.07 E-value=45 Score=23.26 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=12.0
Q ss_pred CCCChhHHHHHHHHhhh
Q psy10366 318 IGEDSEDTMKNLRKTFA 334 (340)
Q Consensus 318 ~~~~~~dtm~~lrktfa 334 (340)
.+...|||-+.||+.|-
T Consensus 22 ~~~~eeEt~qkL~~AF~ 38 (41)
T PF11590_consen 22 PSSEEEETRQKLRRAFD 38 (41)
T ss_dssp ----HHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHH
Confidence 35678999999999994
No 127
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=22.66 E-value=2.8e+02 Score=26.72 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=42.8
Q ss_pred HHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHHHhhcCCCCCC
Q psy10366 166 VAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLVPPDI 230 (340)
Q Consensus 166 aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i~~~~~~~~~~ 230 (340)
.|+.. |+.+.-+-+.+.++|..|.+++- |.+.....++...++..+.+.+|+.++.-|.+
T Consensus 230 LA~~~-~apvvp~~~~R~~~~~~~~i~~~----~~~~~~~~~d~~~~t~~~n~~lE~~Ir~~PeQ 289 (309)
T PRK06860 230 LARMS-KAAVIPFVPRRKPDGKGYELIIL----PPEDSPPLDDAEATAAWMNKVVEKCILMAPEQ 289 (309)
T ss_pred HHHHh-CCeEEEEEEEEeCCCCeEEEEEe----cCCCCCCCCCHHHHHHHHHHHHHHHHHcCchH
Confidence 45555 88999999999888854777774 33332234567778888889999988875544
No 128
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=21.56 E-value=2.5e+02 Score=21.68 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=25.4
Q ss_pred CCcccccCCceeeecCCChHHHHHHHHHHHHhCCCcEEEEeEEEcCCCC
Q psy10366 139 GNWKTNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGKDGK 187 (340)
Q Consensus 139 ~~WktNvgga~~e~~~~~ee~~~~a~~aa~a~~GldiaGVDll~~~dG~ 187 (340)
+.|...-..|++ +.+++-++|+...|++.| |.. .-.+.++||.
T Consensus 10 ~~~~~~~~~GKv--i~lP~SleeLl~ia~~kf-g~~---~~~v~~~dga 52 (69)
T PF11834_consen 10 HPPEKGRRAGKV--IWLPDSLEELLKIASEKF-GFS---ATKVLNEDGA 52 (69)
T ss_pred CCCcccCcCCEE--EEcCccHHHHHHHHHHHh-CCC---ceEEEcCCCC
Confidence 345442123444 556678889999999988 432 3334555664
No 129
>PRK10324 translation inhibitor protein RaiA; Provisional
Probab=20.65 E-value=3.5e+02 Score=22.43 Aligned_cols=70 Identities=11% Similarity=0.158 Sum_probs=43.0
Q ss_pred cCCChHHHHHHHHH----HHHhCCCcEEEEeEEEcCCCCeEEEeecCCccccc---ccchhHHHHHHHHHHHHHHHhhcC
Q psy10366 153 IPMTDHYKLWIDEV----AELFGGLDICALEIIVGKDGKEHIIEVNDSALSLM---GETQEEDRRFIVDLVIQKMQVSVL 225 (340)
Q Consensus 153 ~~~~ee~~~~a~~a----a~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~---~g~~~~~~~~IA~~vi~~i~~~~~ 225 (340)
+++++.+++.+.+- .+.+ . ++..+++..+.++..+++|+.-. .|+. ..-..++--.-.+.++++++++++
T Consensus 10 v~~tdalr~~ie~Kl~kL~k~~-~-~i~~~~V~l~~e~~~~~veitv~-~~g~~l~ae~~~~D~y~AID~a~dklerQLr 86 (113)
T PRK10324 10 MEITPAIRQHVADRLAKLEKWQ-T-HLINPHIILSKEPQGFVADATIN-TPNGVLVASGKHEDMYTAINELINKLERQLN 86 (113)
T ss_pred CcCCHHHHHHHHHHHHHHHHhc-C-CCceEEEEEEEcCCCeEEEEEEE-CCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 77888887777653 3333 3 67889998886665677777532 2321 111224455555667777777665
No 130
>PF11892 DUF3412: Domain of unknown function (DUF3412); InterPro: IPR021826 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain is found associated with PF03641 from PFAM. ; PDB: 3BQ9_A 2PMB_D 3GH1_D.
Probab=20.15 E-value=74 Score=27.36 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=14.5
Q ss_pred CCChhHHHHHHHHhhhhcc
Q psy10366 319 GEDSEDTMKNLRKTFAGIF 337 (340)
Q Consensus 319 ~~~~~dtm~~lrktfagif 337 (340)
....++---||||.|.||-
T Consensus 47 ~qp~~~LAanLRrAFSGIV 65 (123)
T PF11892_consen 47 DQPPHELAANLRRAFSGIV 65 (123)
T ss_dssp TS-HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcccc
Confidence 3455677889999999983
Done!