Query psy10366
Match_columns 340
No_of_seqs 217 out of 701
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 16:02:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i7n_A Synapsin II; synapse, p 100.0 5.3E-60 1.8E-64 455.8 25.5 221 5-225 83-308 (309)
2 2p0a_A Synapsin-3, synapsin II 100.0 9.2E-60 3.1E-64 460.0 24.7 223 5-227 100-327 (344)
3 1pk8_A RAT synapsin I; ATP bin 100.0 9.7E-59 3.3E-63 461.9 24.7 221 5-225 195-420 (422)
4 3t7a_A Inositol pyrophosphate 100.0 2.4E-35 8.2E-40 282.4 13.0 202 10-224 72-318 (330)
5 2q7d_A Inositol-tetrakisphosph 100.0 2.6E-30 8.7E-35 252.0 20.0 192 11-222 90-333 (346)
6 1z2n_X Inositol 1,3,4-trisphos 100.0 4E-28 1.4E-32 229.6 18.3 195 9-223 70-321 (324)
7 1uc8_A LYSX, lysine biosynthes 100.0 2.6E-28 8.9E-33 224.2 14.2 200 11-223 64-278 (280)
8 1gsa_A Glutathione synthetase; 99.9 9.8E-27 3.3E-31 216.8 14.7 198 11-225 100-314 (316)
9 3ln6_A Glutathione biosynthesi 99.9 3.3E-25 1.1E-29 235.2 17.6 190 20-220 469-746 (750)
10 3ln7_A Glutathione biosynthesi 99.9 2.2E-25 7.6E-30 236.5 14.9 185 25-220 479-752 (757)
11 1iow_A DD-ligase, DDLB, D-ALA\ 99.9 5E-24 1.7E-28 198.7 18.6 199 12-221 72-303 (306)
12 3r5x_A D-alanine--D-alanine li 99.9 4.4E-24 1.5E-28 200.5 18.1 200 12-223 73-298 (307)
13 4eg0_A D-alanine--D-alanine li 99.9 1.3E-22 4.5E-27 192.5 16.6 201 11-222 82-313 (317)
14 2fb9_A D-alanine:D-alanine lig 99.9 7.5E-22 2.6E-26 188.6 19.1 202 11-223 93-320 (322)
15 2i87_A D-alanine-D-alanine lig 99.9 5.3E-22 1.8E-26 192.2 16.4 203 11-224 104-342 (364)
16 3se7_A VANA; alpha-beta struct 99.9 1.1E-21 3.7E-26 189.0 18.5 203 11-224 107-341 (346)
17 1ehi_A LMDDL2, D-alanine:D-lac 99.9 4.1E-21 1.4E-25 187.6 21.8 204 11-224 110-352 (377)
18 1e4e_A Vancomycin/teicoplanin 99.9 2.6E-21 9E-26 185.7 18.9 203 11-224 107-341 (343)
19 2pvp_A D-alanine-D-alanine lig 99.8 1.1E-19 3.7E-24 177.7 19.3 199 11-222 124-346 (367)
20 3i12_A D-alanine-D-alanine lig 99.8 2.2E-19 7.4E-24 174.6 21.3 202 11-222 115-349 (364)
21 3tqt_A D-alanine--D-alanine li 99.8 9.9E-20 3.4E-24 178.5 19.0 203 11-223 115-351 (372)
22 3lwb_A D-alanine--D-alanine li 99.8 9.1E-20 3.1E-24 178.4 17.4 203 11-224 126-366 (373)
23 4fu0_A D-alanine--D-alanine li 99.8 1.5E-19 5.1E-24 175.1 17.0 200 12-221 115-345 (357)
24 3e5n_A D-alanine-D-alanine lig 99.8 2.4E-19 8.2E-24 176.3 18.0 201 12-222 135-368 (386)
25 2r85_A PURP protein PF1517; AT 99.8 4E-19 1.4E-23 167.4 17.3 194 13-222 78-326 (334)
26 3k3p_A D-alanine--D-alanine li 99.8 3.7E-19 1.3E-23 175.2 16.7 201 11-222 136-370 (383)
27 3df7_A Putative ATP-grAsp supe 99.8 1.3E-19 4.5E-24 172.5 11.9 178 9-219 84-271 (305)
28 3ax6_A Phosphoribosylaminoimid 99.8 2.7E-19 9.2E-24 173.3 14.1 178 10-205 75-268 (380)
29 3mjf_A Phosphoribosylamine--gl 99.8 1.2E-18 4.3E-23 173.1 17.1 203 11-225 82-323 (431)
30 2ip4_A PURD, phosphoribosylami 99.8 2.3E-18 7.9E-23 168.9 17.0 201 11-222 76-308 (417)
31 2vpq_A Acetyl-COA carboxylase; 99.8 3.4E-18 1.2E-22 169.3 17.4 201 11-221 89-317 (451)
32 1ulz_A Pyruvate carboxylase N- 99.8 6.4E-18 2.2E-22 167.3 18.3 200 11-221 89-316 (451)
33 2dzd_A Pyruvate carboxylase; b 99.8 1.1E-17 3.7E-22 166.4 19.2 199 10-221 94-321 (461)
34 3ouz_A Biotin carboxylase; str 99.8 1E-17 3.5E-22 166.0 18.0 201 10-221 93-321 (446)
35 2xcl_A Phosphoribosylamine--gl 99.8 4.7E-18 1.6E-22 166.8 15.3 200 11-221 77-313 (422)
36 4dim_A Phosphoribosylglycinami 99.8 1.1E-17 3.7E-22 162.8 17.7 200 9-221 84-306 (403)
37 1kjq_A GART 2, phosphoribosylg 99.8 5.3E-18 1.8E-22 164.1 14.8 194 10-218 87-304 (391)
38 2yw2_A Phosphoribosylamine--gl 99.8 8E-18 2.7E-22 165.2 15.9 200 11-221 77-313 (424)
39 3k5i_A Phosphoribosyl-aminoimi 99.8 2.5E-18 8.4E-23 169.5 11.7 183 10-206 99-299 (403)
40 2qk4_A Trifunctional purine bi 99.8 7.1E-18 2.4E-22 167.5 14.6 200 11-221 103-340 (452)
41 2dwc_A PH0318, 433AA long hypo 99.8 1E-17 3.4E-22 165.1 15.6 197 10-221 95-322 (433)
42 3lp8_A Phosphoribosylamine-gly 99.8 1.6E-17 5.5E-22 165.7 17.0 202 11-225 98-338 (442)
43 3aw8_A PURK, phosphoribosylami 99.7 6.6E-18 2.3E-22 162.9 13.1 194 10-219 72-285 (369)
44 3vot_A L-amino acid ligase, BL 99.7 9.7E-17 3.3E-21 157.7 21.1 192 16-220 94-317 (425)
45 2z04_A Phosphoribosylaminoimid 99.7 1.4E-17 4.6E-22 160.3 14.4 176 11-205 71-261 (365)
46 2yrx_A Phosphoribosylglycinami 99.7 2E-17 6.9E-22 164.3 16.0 199 11-220 98-333 (451)
47 3q2o_A Phosphoribosylaminoimid 99.7 1.2E-17 4E-22 162.9 13.9 194 10-220 88-302 (389)
48 2pn1_A Carbamoylphosphate synt 99.7 6.9E-18 2.4E-22 159.5 11.4 189 13-221 91-295 (331)
49 3glk_A Acetyl-COA carboxylase 99.7 4.6E-17 1.6E-21 167.0 17.7 199 11-220 139-388 (540)
50 3jrx_A Acetyl-COA carboxylase 99.7 7E-17 2.4E-21 167.3 18.7 199 11-220 155-404 (587)
51 1vkz_A Phosphoribosylamine--gl 99.7 1.2E-16 4.2E-21 157.1 19.3 198 14-222 85-316 (412)
52 2w70_A Biotin carboxylase; lig 99.7 8.4E-17 2.9E-21 159.3 18.0 200 11-222 90-318 (449)
53 3vmm_A Alanine-anticapsin liga 99.7 1.3E-16 4.5E-21 160.9 18.3 198 10-221 115-357 (474)
54 4e4t_A Phosphoribosylaminoimid 99.7 7.8E-17 2.7E-21 159.9 15.2 180 10-206 109-311 (419)
55 3orq_A N5-carboxyaminoimidazol 99.7 1E-16 3.5E-21 156.3 14.3 179 11-206 87-282 (377)
56 3n6r_A Propionyl-COA carboxyla 99.7 1.7E-16 5.7E-21 166.9 13.7 201 10-221 89-317 (681)
57 3u9t_A MCC alpha, methylcroton 99.7 1.4E-16 4.8E-21 167.3 11.2 201 10-221 115-343 (675)
58 3eth_A Phosphoribosylaminoimid 99.6 2.1E-15 7.1E-20 147.2 14.6 175 11-207 56-251 (355)
59 4ffl_A PYLC; amino acid, biosy 99.6 1.4E-15 4.8E-20 146.3 12.4 181 14-220 82-268 (363)
60 1w96_A ACC, acetyl-coenzyme A 99.6 5.5E-15 1.9E-19 151.2 17.5 201 12-221 147-396 (554)
61 2qf7_A Pyruvate carboxylase pr 99.6 9.1E-16 3.1E-20 169.6 12.3 201 10-221 108-337 (1165)
62 1a9x_A Carbamoyl phosphate syn 99.6 6.5E-15 2.2E-19 161.6 16.6 197 11-221 649-870 (1073)
63 1a9x_A Carbamoyl phosphate syn 99.6 1.8E-14 6.3E-19 158.0 18.9 192 15-218 107-325 (1073)
64 3hbl_A Pyruvate carboxylase; T 99.6 1.3E-14 4.5E-19 160.1 13.9 199 10-220 92-318 (1150)
65 3va7_A KLLA0E08119P; carboxyla 99.6 5.9E-15 2E-19 163.7 10.9 200 10-221 118-346 (1236)
66 2r7k_A 5-formaminoimidazole-4- 99.4 1.5E-12 5.3E-17 127.3 15.8 195 16-222 105-353 (361)
67 2pbz_A Hypothetical protein; N 99.4 4.3E-13 1.5E-17 129.4 10.6 190 13-221 76-303 (320)
68 2cqy_A Propionyl-COA carboxyla 99.1 3.9E-12 1.3E-16 101.2 -1.1 91 29-126 2-108 (108)
69 1wr2_A Hypothetical protein PH 98.9 1.7E-09 5.9E-14 98.8 5.4 152 33-194 19-214 (238)
70 3tig_A TTL protein; ATP-grAsp, 98.5 3.5E-07 1.2E-11 90.2 10.4 146 70-226 148-360 (380)
71 2io8_A Bifunctional glutathion 98.2 6E-07 2.1E-11 93.5 4.7 125 11-146 474-608 (619)
72 3n6x_A Putative glutathionylsp 97.5 9.4E-05 3.2E-09 74.8 6.2 133 10-146 296-461 (474)
73 2fp4_B Succinyl-COA ligase [GD 97.3 0.00024 8.1E-09 70.2 5.7 84 42-128 7-123 (395)
74 2nu8_B SCS-beta, succinyl-COA 97.2 0.00031 1E-08 69.2 5.7 85 41-128 6-116 (388)
75 3ufx_B Succinyl-COA synthetase 97.2 0.00041 1.4E-08 68.5 5.8 85 42-129 7-109 (397)
76 2p0a_A Synapsin-3, synapsin II 96.7 0.00092 3.2E-08 64.9 3.7 44 246-289 284-327 (344)
77 1i7n_A Synapsin II; synapse, p 96.4 0.0021 7E-08 61.5 4.2 41 246-286 267-307 (309)
78 2vob_A Trypanothione synthetas 95.9 0.018 6.1E-07 60.4 8.5 115 11-135 487-614 (652)
79 1pk8_A RAT synapsin I; ATP bin 95.7 0.0057 1.9E-07 61.0 3.8 40 247-286 380-419 (422)
80 3k1t_A Glutamate--cysteine lig 76.2 4.7 0.00016 39.8 6.6 76 70-145 277-370 (432)
81 3n6x_A Putative glutathionylsp 59.2 6.4 0.00022 39.6 3.7 25 172-196 141-165 (474)
82 3pff_A ATP-citrate synthase; p 51.2 16 0.00056 39.2 5.5 59 70-128 53-127 (829)
83 3mwd_A ATP-citrate synthase; A 48.5 18 0.00061 35.7 4.9 59 70-128 53-127 (425)
84 3v2c_Y Ribosome-associated inh 30.9 71 0.0024 25.7 5.1 73 152-225 9-86 (119)
85 4fyl_A Ribosome hibernation pr 22.4 2.1E+02 0.0072 21.6 6.2 73 152-225 9-86 (95)
86 3v26_X ORF3, ORF95, probable s 22.1 68 0.0023 24.9 3.3 73 152-225 9-86 (101)
87 2ywq_A Protein Y, ribosomal su 22.0 1.2E+02 0.004 23.4 4.7 73 152-225 10-92 (105)
88 3tqm_A Ribosome-associated fac 20.5 71 0.0024 24.3 3.1 73 152-225 9-86 (96)
No 1
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=100.00 E-value=5.3e-60 Score=455.83 Aligned_cols=221 Identities=60% Similarity=1.074 Sum_probs=207.8
Q ss_pred ccCChHHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCccc-----ccEEEecCCC
Q psy10366 5 IKQDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM-----YPVVFKIGHA 79 (340)
Q Consensus 5 ~~~~~r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~~-----~PvVvKp~~G 79 (340)
..++||+++++||.+|+||+|+++||++|+||+|+|++++++|+++|+++||+||.+++++..++ ||+|+||++|
T Consensus 83 ~~~~~r~vl~~le~~GvpviN~~~sI~~~~DK~~~~~~~~~~l~~~gi~~~P~~~~~~~~~~~~~~~~~g~PvVvK~~~G 162 (309)
T 1i7n_A 83 ENEDFRHLVIGMQYAGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHREMLTLPTFPVVVKIGHA 162 (309)
T ss_dssp TTCCCHHHHHHHHHTTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESSGGGGSSCCCSSEEEEESSC
T ss_pred ccchHHHHHHHHHHCCccccCCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCCEEeeCChhhhhhccCCCEEEEeCCC
Confidence 56789999999999999999999999999999999999999999999777799999888765543 8999999999
Q ss_pred CcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCeEEEEEEEecCCCcccccCCceeeecCCChHH
Q psy10366 80 HSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHY 159 (340)
Q Consensus 80 s~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~v~A~~R~s~~~~WktNvgga~~e~~~~~ee~ 159 (340)
|||+||+|++|+++++++++.+...+.++++||||+.|+||||+||||+++||||++.+++||||+++|+.+++++++++
T Consensus 163 s~G~GV~lv~~~~~~~~~~~~~~~~~~~~~vQefI~~g~DiRv~VvGg~v~a~~Rr~~~g~wrtN~~~~~~e~~~l~~e~ 242 (309)
T 1i7n_A 163 HSGMGKVKVENHYDFQDIASVVALTQTYATAEPFIDAKYDIRVQKIGNNYKAYMRTSISGNWKTNTGSAMLEQIAMSDRY 242 (309)
T ss_dssp STTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCCEEEEEEEEEETTEEEEEEEESSCTTTSCSCCCSSEEEECCCHHH
T ss_pred CceeCeEEECCHHHHHHHHHHHhccCCeEEEEeecCCCceEEEEEECCEEEEEEEEcCCCCCeecCCcceeeecCCCHHH
Confidence 99999999999999999999887778899999999999999999999999999999878999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHHHhhcC
Q psy10366 160 KLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVL 225 (340)
Q Consensus 160 ~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i~~~~~ 225 (340)
++||.+|+++++|+||||||+|++++|++||+|||+|++|+|+|++.+++.+||++|+++|++.+.
T Consensus 243 ~~la~~A~~a~gGldi~GVDll~~~~g~~~V~EVN~~~~P~~~~~~~~~~~~ia~~ii~~~~~~~~ 308 (309)
T 1i7n_A 243 KLWVDACSEMFGGLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMNQLLS 308 (309)
T ss_dssp HHHHHHHTTGGGCCSEEEEEEEEETTSCEEEEEEECTTCCCCSSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCCCEEEEEEEEcCCCCEEEEEECCCCCCCccchhhhhHHHHHHHHHHHHHHHcC
Confidence 999999999997899999999999999999999999667999999999999999999999998774
No 2
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=100.00 E-value=9.2e-60 Score=459.96 Aligned_cols=223 Identities=55% Similarity=1.025 Sum_probs=207.2
Q ss_pred ccCChHHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCccc-----ccEEEecCCC
Q psy10366 5 IKQDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM-----YPVVFKIGHA 79 (340)
Q Consensus 5 ~~~~~r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~~-----~PvVvKp~~G 79 (340)
..++||+++++||.+|+||+|++++|++|+||+|+|++++++|+++|+++||++|.+++++..++ ||+|+||++|
T Consensus 100 ~~~~yr~vl~~le~~GvpviN~~~sI~~~~DK~~v~~~~l~~l~~~gi~~~P~~~~t~~~~~~~~~~~~g~PvVvK~~~G 179 (344)
T 2p0a_A 100 LGEDYRSLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKPMVTAPHFPVVVKLGHA 179 (344)
T ss_dssp GTEECHHHHHHHHHTTCCEESCHHHHHHTTCHHHHHHHHHHHHHHHCTTTSCBCCCEEESSSTTCCCCSSSSEEEEESSC
T ss_pred cchhHHHHHHHHHHCCceecCCHHHHHhhCCchHHHHHHHHHHHHCCCCCCCCCCEEecCchhhhhhccCCCEEEEeCCC
Confidence 45689999999999999999999999999999999999999999999777899999888765543 8999999999
Q ss_pred CcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCeEEEEEEEecCCCcccccCCceeeecCCChHH
Q psy10366 80 HSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHY 159 (340)
Q Consensus 80 s~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~v~A~~R~s~~~~WktNvgga~~e~~~~~ee~ 159 (340)
|||+||+|++|+++++++++.+...+.|+++||||+.|+||||+||||+++||||++.+++||||+++|+.+++++++++
T Consensus 180 s~G~GV~lve~~~~~~~~~~~~~~~~~~~~vQefI~~g~DiRv~VVGg~vva~~R~~~~g~wrtN~~~~~~e~~~l~~e~ 259 (344)
T 2p0a_A 180 HAGMGKIKVENQLDFQDITSVVAMAKTYATTEAFIDSKYDIRIQKIGSNYKAYMRTSISGNWKANTGSAMLEQVAMTERY 259 (344)
T ss_dssp CTTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCCEEEEEEEEEETTEEEEEEEEESSSCSSTTSSSEEEEEECCCHHH
T ss_pred CceeCeEEECCHHHHHHHHHHHhccCCeEEEEeccCCCccEEEEEECCEEEEEEEecCCCCCeecCCceEEEeeCCCHHH
Confidence 99999999999999999999887778899999999999999999999999999999878999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHHHhhcCCC
Q psy10366 160 KLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLVP 227 (340)
Q Consensus 160 ~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i~~~~~~~ 227 (340)
++||.+|+++++|+||||||+|++++|++||+|||+|++|+|+|++.+++.+||++|+++|++.+++.
T Consensus 260 ~~la~~Aa~a~gGldi~GVDll~~~~G~~~VlEVN~~~~P~~~~~~~~~~~~Ia~~ii~~i~~~~~~~ 327 (344)
T 2p0a_A 260 RLWVDSCSEMFGGLDICAVKAVHSKDGRDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQLPMPG 327 (344)
T ss_dssp HHHHHHHTTGGGCCSEEEEEEEEETTSCEEEEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHhCCCCEEEEEEEEcCCCCEEEEEEcCCCCCcccchhhhHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999789999999999999999999999955699999999999999999999999988763
No 3
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=100.00 E-value=9.7e-59 Score=461.90 Aligned_cols=221 Identities=61% Similarity=1.109 Sum_probs=206.4
Q ss_pred ccCChHHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCccc-----ccEEEecCCC
Q psy10366 5 IKQDHKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM-----YPVVFKIGHA 79 (340)
Q Consensus 5 ~~~~~r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~~-----~PvVvKp~~G 79 (340)
..++||.++++||.+|+||+|++++|++|+||+|+|++++++|+++|+++||+|+++++++..++ ||+|+||++|
T Consensus 195 ~~~~yr~vlr~lE~~GvpviNs~~sI~~~~DK~~vf~~~l~ll~~~gi~~iP~t~~t~~~~~~~~i~~~g~PvVvKp~~G 274 (422)
T 1pk8_A 195 RNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHA 274 (422)
T ss_dssp TTCBCHHHHHHHHHTTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESSGGGCCCCSSSSEEEEESSC
T ss_pred cchhHHHHHHHHHHCCccccCCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCceEecCchhhhhhccCCCEEEEeCCC
Confidence 45789999999999999999999999999999999999999999999777899999888765443 8999999999
Q ss_pred CcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCeEEEEEEEecCCCcccccCCceeeecCCChHH
Q psy10366 80 HSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQRKSISGNWKTNTGSAMLEQIPMTDHY 159 (340)
Q Consensus 80 s~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~v~A~~R~s~~~~WktNvgga~~e~~~~~ee~ 159 (340)
|||+||+|++|+++|+++++.+...+.|+++||||+.|+||||+||||+|+||||++.+++||||+++|+.+++++++|+
T Consensus 275 S~G~GV~lve~~~~l~~ii~~~~~~~~~~~vQEfI~~g~DIRv~VVGg~vva~~Rr~~~g~WrtNvg~g~~e~i~lt~e~ 354 (422)
T 1pk8_A 275 HSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRY 354 (422)
T ss_dssp CTTTTEEEECSHHHHHHHHHHHHHHTSCEEEEECCCEEEEEEEEEETTEEEEEEEEESSSCSSTTSSCEEEEEECCCHHH
T ss_pred CceeCeEEeCCHHHHHHHHHHHhccCceEEEEeecCCCceEEEEEECCEEEEEEEEcCCCCceeccCceeeeeeCCCHHH
Confidence 99999999999999999999888778899999999999999999999999999999878999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHHHhhcC
Q psy10366 160 KLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVL 225 (340)
Q Consensus 160 ~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i~~~~~ 225 (340)
++||++|+++++|+||||||+|++++|++||||||+|++|+|+|++.+++.+||++|+++|++.+.
T Consensus 355 ~elA~kAaka~gGldiaGVDlL~s~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~ii~~i~~~~~ 420 (422)
T 1pk8_A 355 KLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQALP 420 (422)
T ss_dssp HHHHHHHTTGGGCCSEEEEEEEEETTSCEEEEEEECTTCCCCTTCHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhCCCCEEEEEEEEcCCCCEEEEEECCCCCCCccchhhhHHHHHHHHHHHHHHHhcc
Confidence 999999999997899999999999999999999999666999999999999999999999998663
No 4
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=100.00 E-value=2.4e-35 Score=282.44 Aligned_cols=202 Identities=18% Similarity=0.218 Sum_probs=154.7
Q ss_pred HHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCC---------------------cc
Q psy10366 10 KNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF---------------------KE 68 (340)
Q Consensus 10 r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~---------------------~~ 68 (340)
..++++++..|.++||++.++++++|| ..++++|+++| +| +|.+.+... +.
T Consensus 72 ~kai~y~~lr~p~~INd~~~q~~~~DK----~~~~~iL~~~g---IP-tP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~ 143 (330)
T 3t7a_A 72 DKAVAYAKLRNPFVINDLNMQYLIQDR----REVYSILQAEG---IL-LPRYAILNRDPNNPKECNLIEGEDHVEVNGEV 143 (330)
T ss_dssp HHHHHHHHHHCCEESBCSTHHHHHTBH----HHHHHHHHHTT---CC-CCCEEEECCBTTBGGGSSEEECSSEEEETTEE
T ss_pred HHHHHHHHHhCCceeCCHHHHHHHHHH----HHHHHHHHHcC---CC-CCCEEEEeCCCCCccccceeccchhhhhcccc
Confidence 358999999999999999999999999 56666799999 68 555543221 11
Q ss_pred c-ccEEEecCCCC---------------cccceEEecChhhHHHHHHHHHhhCceEEeecCCC-CCCcEEEEEECCeEE-
Q psy10366 69 M-YPVVFKIGHAH---------------SGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYID-SKFDVHVQKIGSNYK- 130 (340)
Q Consensus 69 ~-~PvVvKp~~Gs---------------~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~-~g~DIRv~VIG~~v~- 130 (340)
+ +|+|+||++|+ ||+.+.++.|.++.-+.....+..+.|+ +||||+ .|+||||||||++++
T Consensus 144 l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i-~QEFI~~~G~DIRv~vVG~~vv~ 222 (330)
T 3t7a_A 144 FQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYI-YEEFMPTDGTDVKVYTVGPDYAH 222 (330)
T ss_dssp EESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEE-EEECCCCSSEEEEEEEESTTCEE
T ss_pred ccCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEE-EEeccCCCCceEEEEEECCEEEE
Confidence 2 89999999998 4444556777765311111223334554 699999 599999999999985
Q ss_pred EEEEEec--CCCcccccCC-ceeeecCCChHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccch--
Q psy10366 131 AFQRKSI--SGNWKTNTGS-AMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQ-- 205 (340)
Q Consensus 131 A~~R~s~--~~~WktNvgg-a~~e~~~~~ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~-- 205 (340)
||.|++. +|+||+|+++ +..+++++++|++++|.+|++++ |+++||||+|++++| .||||||+- |..++..
T Consensus 223 Am~R~sp~~~G~~r~N~~gG~~~~~v~Lt~eek~iA~kaa~a~-G~~v~GVDlLrs~~~-~~V~EVNg~--~fvk~~~~y 298 (330)
T 3t7a_A 223 AEARKSPALDGKVERDSEGKEVRYPVILNAREKLIAWKVCLAF-KQTVCGFDLLRANGQ-SYVCDVNGF--SFVKNSMKY 298 (330)
T ss_dssp EEEEECTTSSCBCCBCTTSCBCCEECCCCHHHHHHHHHHHHHT-TBSEEEEEEEEETTE-EEEEEEEES--CCCSSCHHH
T ss_pred EEEEeCCCCCCcEEEcCCCCceeeeecCCHHHHHHHHHHHHHh-CCceEEEEEEEECCc-cEEEEeCCC--ccccCchhH
Confidence 6888874 6899999974 56789999999999999999999 999999999999765 689999976 9888753
Q ss_pred -hHHHHHHHHHHHHHHHhhc
Q psy10366 206 -EEDRRFIVDLVIQKMQVSV 224 (340)
Q Consensus 206 -~~~~~~IA~~vi~~i~~~~ 224 (340)
...+.-|...++..+..+.
T Consensus 299 yd~~a~il~~~~~~~~~~~~ 318 (330)
T 3t7a_A 299 YDDCAKILGNIVMRELAPQF 318 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccc
Confidence 3455555566666565443
No 5
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=99.97 E-value=2.6e-30 Score=252.00 Aligned_cols=192 Identities=14% Similarity=0.224 Sum_probs=143.1
Q ss_pred HHHHHHH--hCCCcccCChhHHHHcCCchHHHHHHHHHHHHc-------CCCCCCcccccccCCC---c---------cc
Q psy10366 11 NLLLGFN--IGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKL-------GKENFPLIDITYYPNF---K---------EM 69 (340)
Q Consensus 11 ~vl~~le--~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~-------G~~~~P~~~~t~~~~~---~---------~~ 69 (340)
..|+.|+ ..|++++|++.+|.+|.|| ..+.++|+++ | || +|.++.... . .+
T Consensus 90 ~~l~~~~~~~~gv~vinp~~ai~~~~dk----~~~~~~L~k~~~~~~~~g---Ip-~P~t~~~~~~~~~~~~~~~~~~~l 161 (346)
T 2q7d_A 90 HRFQEYIDAHPETIVLDPLPAIRTLLDR----SKSYELIRKIEAYMEDDR---IC-SPPFMELTSLCGDDTMRLLEKNGL 161 (346)
T ss_dssp HHHHHHHHHCTTSEEESCHHHHHHTTBH----HHHHHHHHHHHHHHCBTT---EE-CCCEEEECSCCCTTHHHHHHHTTC
T ss_pred HHHHHHHHHCCCeEEcCCHHHHHHhhhH----HHHHHHHHhhcccccCCC---CC-CCCEEEEeCCCHHHHHHHHHhcCC
Confidence 3556665 4699999999999999999 5555566665 7 68 455543221 1 13
Q ss_pred -ccEEEecCC--CCcccceEEecChhhHHHHHHHHHhhCceEEeecCCC-CCCcEEEEEECCeEEEEEEEecCCCcccc-
Q psy10366 70 -YPVVFKIGH--AHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYID-SKFDVHVQKIGSNYKAFQRKSISGNWKTN- 144 (340)
Q Consensus 70 -~PvVvKp~~--Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~-~g~DIRv~VIG~~v~A~~R~s~~~~WktN- 144 (340)
||+|+||.. |+++.|+.++.+.++|..+ +..+++||||+ .|+||||+|||+++++++|++ ..+|++|
T Consensus 162 g~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~~-------~~~~lvQefI~~~G~dirv~VvG~~v~~~~r~s-l~~~~~~~ 233 (346)
T 2q7d_A 162 TFPFICKTRVAHGTNSHEMAIVFNQEGLNAI-------QPPCVVQNFINHNAVLYKVFVVGESYTVVQRPS-LKNFSAGT 233 (346)
T ss_dssp CSSEEEECSBCSSTTCCEEEEECSGGGTTC---------CCEEEEECCCCTTEEEEEEEETTEEEEEEEEC-CCCCC---
T ss_pred CCCEEEEecCCCcceeeeeEEecCHHHHHhc-------CCCEEEEEeeCCCCeEEEEEEECCEEEEEEEec-CCCcCcCc
Confidence 899999986 4668899999999987763 34567899999 599999999999999888886 4568886
Q ss_pred ------------cC--Cce-----------eeecCCChHHHHHHHHHHHHhCCCcEEEEeEEEcC-CCCeEEEeecCCcc
Q psy10366 145 ------------TG--SAM-----------LEQIPMTDHYKLWIDEVAELFGGLDICALEIIVGK-DGKEHIIEVNDSAL 198 (340)
Q Consensus 145 ------------vg--ga~-----------~e~~~~~ee~~~~a~~aa~a~~GldiaGVDll~~~-dG~~~VlEVN~s~~ 198 (340)
+. ++. ...++.+++++++|.+|++++ |++++|||+++++ +|++||+|||.+
T Consensus 234 ~~~~~~~f~s~~~~~~g~~~~~~~~~~~~~~~~~~~~~el~~lA~~a~~al-Gl~~~gvDii~~~~~g~~~VlEVN~~-- 310 (346)
T 2q7d_A 234 SDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPSDEVIRELSRALRQAL-GVSLFGIDIIINNQTGQHAVIDINAF-- 310 (346)
T ss_dssp -CCCCEEEEGGGTSSTTCCCGGGCCSCCCSCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEEEECTTTCCEEEEEEEES--
T ss_pred cccccccccceeeccCCccccccccccccccccCCChHHHHHHHHHHHHHh-CCceEeeEEEeecCCCCEEEEEEeCC--
Confidence 21 221 123455688999999999999 9999999999986 688999999976
Q ss_pred cccccchhHHHHHHHHHHHHHHHh
Q psy10366 199 SLMGETQEEDRRFIVDLVIQKMQV 222 (340)
Q Consensus 199 P~~~g~~~~~~~~IA~~vi~~i~~ 222 (340)
|+|+|++.. ...|++++.+.+++
T Consensus 311 PG~~g~~~~-~~~i~~~l~~~~~~ 333 (346)
T 2q7d_A 311 PGYEGVSEF-FTDLLNHIATVLQG 333 (346)
T ss_dssp CCCTTCTTH-HHHHHHHHHHHHHH
T ss_pred ccccccchH-HHHHHHHHHHHhhc
Confidence 999998642 34455555544443
No 6
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=99.96 E-value=4e-28 Score=229.62 Aligned_cols=195 Identities=15% Similarity=0.186 Sum_probs=154.6
Q ss_pred hHHHHHHHHh--CCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCC-Cc-------c--c-ccEEEe
Q psy10366 9 HKNLLLGFNI--GGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPN-FK-------E--M-YPVVFK 75 (340)
Q Consensus 9 ~r~vl~~le~--~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~-~~-------~--~-~PvVvK 75 (340)
+...|+.++. .|+|++|+++++..|.|| ..+.++|+++| +|+ |.++... .. + + ||+|+|
T Consensus 70 ~~~~l~~~~~~~~g~~~~~~~~~~~~~~dK----~~~~~~l~~~g---i~~-P~~~~~~~~~~~~~~~~~~~~~~P~vvK 141 (324)
T 1z2n_X 70 MADEMRKYEKDHPKVLFLESSAIHDMMSSR----EEINALLIKNN---IPI-PNSFSVKSKEEVIQLLQSKQLILPFIVK 141 (324)
T ss_dssp HHHHHHHHHHHCTTSEEETCHHHHHHHTBH----HHHHHHHHHTT---CCC-SCEEEESSHHHHHHHHHTTCSCSSEEEE
T ss_pred HHHHHHHHHHhCCCCeEeCCHHHHHHHhCH----HHHHHHHHHCC---CCC-CCEEEeCCHHHHHHHHHHcCCCCCEEEe
Confidence 5566666666 899999999999999999 45555689999 684 4444322 11 1 3 799999
Q ss_pred cCCCCcc---cceEEecChhhHHHHHHHHHhhCceEEeecCCC-CCCcEEEEEECCeEEEEEEEec--------------
Q psy10366 76 IGHAHSG---FGKVRVESNQDFQDMAGVVAVANTYCTTEPYID-SKFDVHVQKIGSNYKAFQRKSI-------------- 137 (340)
Q Consensus 76 p~~Gs~G---~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~-~g~DIRv~VIG~~v~A~~R~s~-------------- 137 (340)
|..|++| .|+.++++.+++.. ....+++|+||+ .|+|+||+|+|+++.+.+|++.
T Consensus 142 P~~g~g~~~s~gv~~v~~~~~l~~-------~~~~~lvqe~i~~~g~~~~v~v~g~~~~~~~~~~~~~~~~g~~~~~~~~ 214 (324)
T 1z2n_X 142 PENAQGTFNAHQMKIVLEQEGIDD-------IHFPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKSVDFN 214 (324)
T ss_dssp ESBCSSSSGGGEEEEECSGGGGTT-------CCSSEEEEECCCCTTCEEEEEEETTEEEEEEECCCCCCCCSSCCEEEEE
T ss_pred eCCCCCCccceeeEEEeCHHHHhh-------cCCCEEEEEccCCCCcEEEEEEECCEEEEEEecCcccccCCCccceeec
Confidence 9999999 99999999887653 245567899999 5999999999999876677643
Q ss_pred ------------------------CCCcccccCCceeeecCCC-hHHHHHHHHHHHHhCCCcEEEEeEEEc-CCCCeEEE
Q psy10366 138 ------------------------SGNWKTNTGSAMLEQIPMT-DHYKLWIDEVAELFGGLDICALEIIVG-KDGKEHII 191 (340)
Q Consensus 138 ------------------------~~~WktNvgga~~e~~~~~-ee~~~~a~~aa~a~~GldiaGVDll~~-~dG~~~Vl 191 (340)
.++|++|++.+...+..++ ++++++|.++++++ |++++|||++.+ ++|+++|+
T Consensus 215 ~~~~~~~~~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~l-g~~~~~vD~~~~~~~g~~~vl 293 (324)
T 1z2n_X 215 NQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPILLNLTSEAEMRDLAYKVRCAL-GVQLCGIDFIKENEQGNPLVV 293 (324)
T ss_dssp TTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCSCTTTTTSCCHHHHHHHHHHHHHHH-TCSEEEEEEECGGGCSSCEEE
T ss_pred cccchhhhccccccccccccccccccchhhccccCCccccCCCHHHHHHHHHHHHHHh-CCcEEeeEEEEEcCCCCEEEE
Confidence 2469999864333456777 79999999999999 899999999998 56889999
Q ss_pred eecCCcccccccchhHHHHHHHHHHHHHHHhh
Q psy10366 192 EVNDSALSLMGETQEEDRRFIVDLVIQKMQVS 223 (340)
Q Consensus 192 EVN~s~~P~~~g~~~~~~~~IA~~vi~~i~~~ 223 (340)
|||.. |+|.++.... .|++++.+.+++.
T Consensus 294 EvN~~--Pg~~~~~~~~--~i~~~l~~~~~~~ 321 (324)
T 1z2n_X 294 DVNVF--PSYGGKVDFD--WFVEKVALCYTEV 321 (324)
T ss_dssp EEEES--CCTTSCBCHH--HHHHHHHHHHHC-
T ss_pred EEcCC--CCcCCCCCHH--HHHHHHHHHHHHh
Confidence 99977 9999998765 8888888777654
No 7
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.95 E-value=2.6e-28 Score=224.15 Aligned_cols=200 Identities=20% Similarity=0.183 Sum_probs=148.5
Q ss_pred HHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCccccccc-CCCcc-------c-ccEEEecCCCCc
Q psy10366 11 NLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYY-PNFKE-------M-YPVVFKIGHAHS 81 (340)
Q Consensus 11 ~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~-~~~~~-------~-~PvVvKp~~Gs~ 81 (340)
.++..||..|+|++|+++++..|.|| ..+.++|+++| +|+ |.++. ....+ + ||+|+||..|++
T Consensus 64 ~~~~~l~~~g~~~~~~~~~~~~~~dK----~~~~~~l~~~g---i~~-p~~~~~~~~~~~~~~~~~~~~p~vvKp~~g~~ 135 (280)
T 1uc8_A 64 AAARYLTALGIPVVNRPEVIEACGDK----WATSVALAKAG---LPQ-PKTALATDREEALRLMEAFGYPVVLKPVIGSW 135 (280)
T ss_dssp HHHHHHHHTTCCEESCHHHHHHHHBH----HHHHHHHHHTT---CCC-CCEEEESSHHHHHHHHHHHCSSEEEECSBCCB
T ss_pred HHHHHHHHCCCceeCCHHHHHHhCCH----HHHHHHHHHcC---cCC-CCeEeeCCHHHHHHHHHHhCCCEEEEECCCCC
Confidence 46677999999999999999999999 44455689999 684 44443 22221 2 799999999999
Q ss_pred ccceEEecChhhHHHHHHHH---Hh-hCceEEeecCCCC-CCcEEEEEECCeEEEEEEEecCCCcccccC-CceeeecCC
Q psy10366 82 GFGKVRVESNQDFQDMAGVV---AV-ANTYCTTEPYIDS-KFDVHVQKIGSNYKAFQRKSISGNWKTNTG-SAMLEQIPM 155 (340)
Q Consensus 82 G~Gv~lv~~~~~l~~i~~~l---~~-~~~~~~vQefI~~-g~DIRv~VIG~~v~A~~R~s~~~~WktNvg-ga~~e~~~~ 155 (340)
|.|+.++++.+++....+.+ .. ....+++|+||+. ++|+|++++||++.+.+.+. +++|++|.. ++...+.++
T Consensus 136 ~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvqe~i~~~~~e~~v~v~~~~~~~~~~~~-~~~~~~~~~~g~~~~p~~l 214 (280)
T 1uc8_A 136 GRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRR-SAHWITNTARGGQAENCPL 214 (280)
T ss_dssp CSHHHHHHHHHC------------CTTTTCEEEEECCCCSSCCEEEEEETTEEEEEEEC---------------CEECCC
T ss_pred cccceecccccccchhhhhHhhhcccCCCcEEEEeccCCCCceEEEEEECCEEEEEEEEe-cCCccccccCCccccCCCC
Confidence 99999999999888766543 21 1345678999995 99999999999986544332 478999985 556678889
Q ss_pred ChHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHHHhh
Q psy10366 156 TDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVS 223 (340)
Q Consensus 156 ~ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i~~~ 223 (340)
+++.++++.++++++ |+++++||++.+++| ++|+|||.. |++.++...++.++++++++.+...
T Consensus 215 ~~~~~~~~~~~~~~l-g~g~~~vD~~~~~~g-~~~iEiN~r--~g~~~~~~~~G~~~~~~~~~~~~~~ 278 (280)
T 1uc8_A 215 TEEVARLSVKAAEAV-GGGVVAVDLFESERG-LLVNEVNHT--MEFKNSVHTTGVDIPGEILKYAWSL 278 (280)
T ss_dssp CHHHHHHHHHHHHHT-TCSEEEEEEEEETTE-EEEEEEETT--CCCTTHHHHHCCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh-CCCeEEEEEEEeCCC-eEEEEEeCC--CCccchheeeccCHHHHHHHHHHhh
Confidence 999999999999998 789999999999887 899999987 9999999999999999999887643
No 8
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.94 E-value=9.8e-27 Score=216.80 Aligned_cols=198 Identities=17% Similarity=0.217 Sum_probs=157.7
Q ss_pred HHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCC-cc---c----ccEEEecCCCCcc
Q psy10366 11 NLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF-KE---M----YPVVFKIGHAHSG 82 (340)
Q Consensus 11 ~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~-~~---~----~PvVvKp~~Gs~G 82 (340)
.++..|+..|+|++|+++++.+|.||.+++.. ++ | +|.++.... .+ + .|+|+||..|++|
T Consensus 100 ~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~----l~-------~-~P~t~~~~~~~~~~~~~~~~~p~vvKP~~g~~g 167 (316)
T 1gsa_A 100 YILERAEEKGTLIVNKPQSLRDCNEKLFTAWF----SD-------L-TPETLVTRNKAQLKAFWEKHSDIILKPLDGMGG 167 (316)
T ss_dssp HHHHHHHHTTCEEESCHHHHHHCCTTGGGGGG----TT-------T-SCCEEEESCHHHHHHHHHHHSSEEEECSSCCTT
T ss_pred HHHHHHHHcCCeEecCHHHHHhhhhHHHHHhh----hh-------c-CCCeEEeCCHHHHHHHHHHcCCEEEEECCCCCc
Confidence 57788889999999999999999999544433 32 3 233433222 22 1 4999999999999
Q ss_pred cceEEec-ChhhHHHHHHHHHhh-CceEEeecCCCC--CCcEEEEEECCeEE--EEEEEecCCCcccccC-CceeeecCC
Q psy10366 83 FGKVRVE-SNQDFQDMAGVVAVA-NTYCTTEPYIDS--KFDVHVQKIGSNYK--AFQRKSISGNWKTNTG-SAMLEQIPM 155 (340)
Q Consensus 83 ~Gv~lv~-~~~~l~~i~~~l~~~-~~~~~vQefI~~--g~DIRv~VIG~~v~--A~~R~s~~~~WktNvg-ga~~e~~~~ 155 (340)
+|+.+++ +.+++..+.+.+... ...+++|+||+. ++|+||+++||++. ++.|....++|++|+. ++...+.++
T Consensus 168 ~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~~~~~~~v~~~~g~~~~~~~~r~~~~~~~~~~~~~gg~~~~~~~ 247 (316)
T 1gsa_A 168 ASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAAGGRGEPRPL 247 (316)
T ss_dssp TTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEETTEECSEEEEEECCSSCSCCCGGGTCEEEEEEC
T ss_pred ccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCCCCCCEEEEEECCEEeeeEEEEeCCCCCceeEEccCCccccCCC
Confidence 9999998 888888877765433 345678999995 89999999999984 5667655689999986 667778889
Q ss_pred ChHHHHHHHHHHHHh--CCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHHHhhcC
Q psy10366 156 TDHYKLWIDEVAELF--GGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVL 225 (340)
Q Consensus 156 ~ee~~~~a~~aa~a~--~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i~~~~~ 225 (340)
+++.++++.++++++ .|++++|||++ |. +|+|||....|+|..++..++.++++++++.+...++
T Consensus 248 ~~~~~~~a~~~~~~l~~~g~~~~~vD~~----g~-~~iEvN~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 314 (316)
T 1gsa_A 248 TESDWKIARQIGPTLKEKGLIFVGLDII----GD-RLTEINVTSPTCIREIEAEFPVSITGMLMDAIEARLQ 314 (316)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEEEEE----TT-EEEEEECSSCCCHHHHHHHSSCCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhCCCcEEEEEec----CC-EEEEEcCCCCcchHHHHHhhCcCHHHHHHHHHHHHhh
Confidence 999999999998875 59999999988 55 8999997322588888888999999999999987653
No 9
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.93 E-value=3.3e-25 Score=235.18 Aligned_cols=190 Identities=17% Similarity=0.221 Sum_probs=151.0
Q ss_pred CCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCC--------ccc-ccEEEecCCCCcccceEEec-
Q psy10366 20 GIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF--------KEM-YPVVFKIGHAHSGFGKVRVE- 89 (340)
Q Consensus 20 GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~--------~~~-~PvVvKp~~Gs~G~Gv~lv~- 89 (340)
++...+++.++..|+|| ..+.++|+++| ||+++...+... ..+ ||+||||..|++|+||.+++
T Consensus 469 ~itg~~~~~a~~~~~DK----~~tk~lL~~~G---IPvP~~~~~~~~~ea~~~~~~~~g~PvVVKP~~G~~G~GV~iv~~ 541 (750)
T 3ln6_A 469 NMTSKDNYIVPLAMANK----VVTKKILDEKH---FPTPFGDEFTDRKEALNYFSQIQDKPIVVKPKSTNFGLGISIFKT 541 (750)
T ss_dssp TBCTTSCTHHHHHTTTS----HHHHHHHHHTT---CCCCCCCCEETTTTHHHHHHHSSSSCEEEEETTCCSSSSCEEESS
T ss_pred CeeCCCHHHHHHHHhCH----HHHHHHHHHCC---cCCCCEEEECCHHHHHHHHHHhcCCcEEEEeCCCCCCCCEEEEeC
Confidence 45667888899999999 55566799999 684333222221 123 89999999999999999999
Q ss_pred --ChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCeEEE-EEEEecC----------------------------
Q psy10366 90 --SNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKA-FQRKSIS---------------------------- 138 (340)
Q Consensus 90 --~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~v~A-~~R~s~~---------------------------- 138 (340)
+.+++....+........+++|+||+ |+|+||+|+||++++ +.|.+..
T Consensus 542 ~~s~eel~~a~~~~~~~~~~vlVEefI~-G~E~~v~Vvgg~vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~ 620 (750)
T 3ln6_A 542 SANLASYEKAIDIAFTEDSAILVEEYIE-GTEYRFFVLEGDCIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRS 620 (750)
T ss_dssp CCCHHHHHHHHHHHHHHCSEEEEEECCC-SEEEEEEEETTEEEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCC
T ss_pred CCCHHHHHHHHHHHHhhCCcEEEEeccC-CCEEEEEEECCEEEEEEEEecceEecCCccCHHHHHHhhccCccccccccC
Confidence 78877776665443456678999998 899999999999976 5554321
Q ss_pred ----------------------------CC-----cccccC-Cceeeec--CCChHHHHHHHHHHHHhCCCcEEEEeEEE
Q psy10366 139 ----------------------------GN-----WKTNTG-SAMLEQI--PMTDHYKLWIDEVAELFGGLDICALEIIV 182 (340)
Q Consensus 139 ----------------------------~~-----WktNvg-ga~~e~~--~~~ee~~~~a~~aa~a~~GldiaGVDll~ 182 (340)
|. |++|++ ||..+.+ .++++++++|.+|++++ |++|||||++.
T Consensus 621 ~l~~i~~d~~~~~~l~~~g~~~~~V~~~Ge~v~L~~~~Nls~Gg~~~d~td~i~p~~~~~a~~aa~~i-gl~~~GvDli~ 699 (750)
T 3ln6_A 621 PLEVIELGEVEQLMLEQQGYTVNSIPPEGTKIELRRNSNISTGGDSIDVTNTMDPTYKQLAAEMAEAM-GAWVCGVDLII 699 (750)
T ss_dssp SEECCCCCHHHHHHHHHTTCCSSCCCCTTCEEESCSSCCTTTTCEEEECTTTSCHHHHHHHHHHHHHH-TCSSCEEEEEE
T ss_pred ccccccccHHHHHHHHHcCCCccccCCCCCEEEEeecccccCCCceeeccccCCHHHHHHHHHHHHHh-CCCeEEEEEEe
Confidence 11 789996 7888888 68999999999999999 99999999998
Q ss_pred cC--------CCCeEEEeecCCcccccccchh---HHHHHHHHHHHHHH
Q psy10366 183 GK--------DGKEHIIEVNDSALSLMGETQE---EDRRFIVDLVIQKM 220 (340)
Q Consensus 183 ~~--------dG~~~VlEVN~s~~P~~~g~~~---~~~~~IA~~vi~~i 220 (340)
+. .|+++|+|||++ |++.++.. .++++||+.|++++
T Consensus 700 ~di~~~~~~~~~~~~iiEvN~~--pg~~~h~~p~~g~~~~v~~~ii~~l 746 (750)
T 3ln6_A 700 PNATQAYSKDKKNATCIELNFN--PLMYMHTYCQEGPGQSITPRILAKL 746 (750)
T ss_dssp SCSSSCCCTTTTCCEEEEEESS--CCCHHHHSCSBSCCCCCHHHHHHHH
T ss_pred cCccccccccCCCeEEEEEcCC--cchhhhcCcccCCCCcHHHHHHHHh
Confidence 74 456799999999 99999864 56899999999886
No 10
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.92 E-value=2.2e-25 Score=236.51 Aligned_cols=185 Identities=16% Similarity=0.219 Sum_probs=148.6
Q ss_pred CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCC-------C-ccc-ccEEEecCCCCcccceEEe----cCh
Q psy10366 25 NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPN-------F-KEM-YPVVFKIGHAHSGFGKVRV----ESN 91 (340)
Q Consensus 25 Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~-------~-~~~-~PvVvKp~~Gs~G~Gv~lv----~~~ 91 (340)
++..++..|+|| ..+.++|+++| ||+++...+.. . +++ ||+||||..|++|+||.++ +|.
T Consensus 479 ~s~~aa~~~~DK----~~tk~lL~~~G---IPvP~~~~~~~~~ea~~~~~~~~g~PvVVKP~~g~~G~GV~iv~~~v~~~ 551 (757)
T 3ln7_A 479 DSYISPLIMENK----VVTKKVLQKAG---FNVPQSVEFTSLEKAVASYALFENRAVVIKPKSTNYGLGITIFQQGVQNR 551 (757)
T ss_dssp SBSHHHHHHHHS----HHHHHHHHHHT---CCCCCEEEESCHHHHHHGGGGSSSSCEEEEESSCSTTTTCEECSSCCCCH
T ss_pred CHHHHHHHhcCH----HHHHHHHHHCC---cCCCCEEEECCHHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEecCCCCCH
Confidence 677899999999 55666799999 68544332221 1 234 8999999999999999999 788
Q ss_pred hhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCeEEE-EEEEec---------------------------------
Q psy10366 92 QDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKA-FQRKSI--------------------------------- 137 (340)
Q Consensus 92 ~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~v~A-~~R~s~--------------------------------- 137 (340)
+++...++.....+..+++|+||+ |+|+||+|+||++++ +.|.+.
T Consensus 552 eel~~al~~a~~~~~~vlVEefI~-G~Ei~v~Vlggkvvaai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~ 630 (757)
T 3ln7_A 552 EDFAKALEIAFREDKEVMVEDYLV-GTEYRFFVLGDETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKK 630 (757)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECCC-SEEEEEEEETTEEEEEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEEC
T ss_pred HHHHHHHHHHHhcCCcEEEEEcCC-CcEEEEEEECCEEEEEEEEecccccCCCcccHHHHHHhhcccccccccccCcccc
Confidence 888887765443455678999996 799999999999976 555431
Q ss_pred -----------------------CCC-----cccccC-Cceeeec--CCChHHHHHHHHHHHHhCCCcEEEEeEEEc---
Q psy10366 138 -----------------------SGN-----WKTNTG-SAMLEQI--PMTDHYKLWIDEVAELFGGLDICALEIIVG--- 183 (340)
Q Consensus 138 -----------------------~~~-----WktNvg-ga~~e~~--~~~ee~~~~a~~aa~a~~GldiaGVDll~~--- 183 (340)
.|. |++|++ ||..+.+ .++++++++|.+|++++ |++|||||++.+
T Consensus 631 I~ld~~~~~~L~~~g~~~d~Vp~~Ge~v~L~~~~Nls~GG~~~dvtd~i~p~~~~~a~~aa~~l-Gl~~~GvDli~~di~ 709 (757)
T 3ln7_A 631 IALGEIEQLQLKEQGLTIDSIPAKDQLVQLRANSNISTGGDSIDMTDEMHESYKQLAVGITKAM-GAAVCGVDLIIPDLK 709 (757)
T ss_dssp CCCCHHHHHHHHHHTCCSSSCCCSSCEEECCSSCCGGGTCCEEECTTTSCHHHHHHHHHHHHHH-TCSEEEEEEEESCSS
T ss_pred ccccHHHHHHHHHcCCCccccCCCCCEEEeecccccccCccceeccccCCHHHHHHHHHHHHHh-CCCEEEEEEEecCcc
Confidence 011 789996 7888888 89999999999999999 999999999987
Q ss_pred -----CCCCeEEEeecCCcccccccchh---HHHHHHHHHHHHHH
Q psy10366 184 -----KDGKEHIIEVNDSALSLMGETQE---EDRRFIVDLVIQKM 220 (340)
Q Consensus 184 -----~dG~~~VlEVN~s~~P~~~g~~~---~~~~~IA~~vi~~i 220 (340)
+.|++.|+|||++ |++.++.. .++++||+.|++++
T Consensus 710 ~p~~~~~~~~~iiEvN~~--P~~~~h~~p~~g~~~~v~~~ii~~l 752 (757)
T 3ln7_A 710 QPATPNLTSWGVIEANFN--PMMMMHIFPYAGKSRRLTQNVIKML 752 (757)
T ss_dssp SCCCSSTTTCEEEEEESS--CCHHHHHSCSSSCCCCCHHHHHHHH
T ss_pred ccccccCCCeEEEEEcCC--cchhhhhccccCCCCchHHHHHHHh
Confidence 2356799999998 99999874 47899999999887
No 11
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.92 E-value=5e-24 Score=198.66 Aligned_cols=199 Identities=16% Similarity=0.199 Sum_probs=150.7
Q ss_pred HHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCC--------------Cccc-ccEEEe
Q psy10366 12 LLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPN--------------FKEM-YPVVFK 75 (340)
Q Consensus 12 vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~--------------~~~~-~PvVvK 75 (340)
+...+|..|+|++ |+++++.+|.|| ..+.++++++| +|+++...+.. ..++ ||+|||
T Consensus 72 ~~~~~e~~g~~~~g~~~~~~~~~~dK----~~~~~~l~~~g---i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vvK 144 (306)
T 1iow_A 72 LQGMLELMGLPYTGSGVMASALSMDK----LRSKLLWQGAG---LPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVK 144 (306)
T ss_dssp HHHHHHHHTCCBSSCCHHHHHHHHCH----HHHHHHHHHTT---CCBCCEEEEEHHHHHHCCCTHHHHHHHTTCSSEEEE
T ss_pred HHHHHHHcCCCccCCCHHHHHHHcCH----HHHHHHHHHCC---CCCCCeEEEchhhhhccchhhhhhHHhccCCCEEEE
Confidence 4456888899987 889999999999 44445688999 68443322211 1123 899999
Q ss_pred cCCCCcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCeEEEEEEEecCC---CcccccC-Cc--e
Q psy10366 76 IGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKAFQRKSISG---NWKTNTG-SA--M 149 (340)
Q Consensus 76 p~~Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~v~A~~R~s~~~---~WktNvg-ga--~ 149 (340)
|..|++|+|+.++++.+++....+.+......+++||||+ |++++|.++||++.++.+....+ +|++|.. |+ .
T Consensus 145 P~~g~~~~gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~-g~e~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 223 (306)
T 1iow_A 145 PSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS-GPEFTVAILGEEILPSIRIQPSGTFYDYEAKFLSDETQY 223 (306)
T ss_dssp ETTCCTTTTCEEESSGGGHHHHHHHHTTTCSEEEEEECCC-CCEEEEEEETTEECCCEEEECSSSSSCHHHHHTCSCCEE
T ss_pred eCCCCCCCCEEEeCCHHHHHHHHHHHHhhCCCEEEEeCcC-CEEEEEEEECCCccceEEEEeCCCeEchhheecCCCeeE
Confidence 9999999999999999998887765543345667899999 89999999999976544332222 6777764 33 2
Q ss_pred eeecCCCh----HHHHHHHHHHHHhCCC-cEEEEeEEEcCCCCeEEEeecCCcccccccc------hhHHHHHHHHHHHH
Q psy10366 150 LEQIPMTD----HYKLWIDEVAELFGGL-DICALEIIVGKDGKEHIIEVNDSALSLMGET------QEEDRRFIVDLVIQ 218 (340)
Q Consensus 150 ~e~~~~~e----e~~~~a~~aa~a~~Gl-diaGVDll~~~dG~~~VlEVN~s~~P~~~g~------~~~~~~~IA~~vi~ 218 (340)
..+..+++ ++++++.++++++ |+ ++++||++.+++|+++|+|||.. |++.++ ...++.++++++.+
T Consensus 224 ~~p~~l~~~~~~~i~~~a~~~~~~l-g~~G~~~vD~~~~~~g~~~~iEiN~r--pg~~~~s~~p~~~~~~G~~~~~~~~~ 300 (306)
T 1iow_A 224 FCPAGLEASQEANLQALVLKAWTTL-GCKGWGRIDVMLDSDGQFYLLEANTS--PGMTSHSLVPMAARQAGMSFSQLVVR 300 (306)
T ss_dssp ESSCCCCHHHHHHHHHHHHHHHHHH-TCCSEEEEEEEECTTSCEEEEEEESS--CCCSTTCHHHHHHHHTTCCHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHHHHHHHc-CCceEEEEEEEEcCCCCEEEEEecCC--CCCCCCCHHHHHHHHcCCCHHHHHHH
Confidence 23344554 5688899999999 55 59999999999999999999977 988764 45678889998887
Q ss_pred HHH
Q psy10366 219 KMQ 221 (340)
Q Consensus 219 ~i~ 221 (340)
.++
T Consensus 301 ~~~ 303 (306)
T 1iow_A 301 ILE 303 (306)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 12
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.92 E-value=4.4e-24 Score=200.45 Aligned_cols=200 Identities=16% Similarity=0.157 Sum_probs=148.2
Q ss_pred HHHHHHhCCCcccCC-hhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc--------cc-ccEEEecCCCCc
Q psy10366 12 LLLGFNIGGIPSINT-LQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK--------EM-YPVVFKIGHAHS 81 (340)
Q Consensus 12 vl~~le~~GvpviNs-~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~--------~~-~PvVvKp~~Gs~ 81 (340)
+...||..|+|++|+ +.++.+|.|| ..+.++++++| +|+++........ ++ ||+||||..|++
T Consensus 73 ~~~~le~~gi~~~g~~~~~~~~~~dK----~~~~~~l~~~G---ip~p~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~~ 145 (307)
T 3r5x_A 73 VQGTLESLGIPYSGSNMLSSGICMDK----NISKKILRYEG---IETPDWIELTKMEDLNFDELDKLGFPLVVKPNSGGS 145 (307)
T ss_dssp HHHHHHHHTCCBSSSCHHHHHHHHCH----HHHHHHHHHTT---CCCCCEEEEESSSCCCHHHHHHHCSSEEEEECC---
T ss_pred HHHHHHHcCCCeeCcCHHHHHHHcCH----HHHHHHHHHCC---CCCCCEEEEeChhhhhHHHHHhcCCCEEEEeCCCCC
Confidence 455789999999965 9999999999 45555689999 6844432222211 12 899999999999
Q ss_pred ccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCeEEE-EEEEecCC--Cccccc-C-CceeeecCCC
Q psy10366 82 GFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKA-FQRKSISG--NWKTNT-G-SAMLEQIPMT 156 (340)
Q Consensus 82 G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~v~A-~~R~s~~~--~WktNv-g-ga~~e~~~~~ 156 (340)
|.|+.++++.+++......+......+++||||+ |++++|.++||++.. ..+....+ +|++|. . +....+.+++
T Consensus 146 s~Gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~-G~e~~v~v~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~l~ 224 (307)
T 3r5x_A 146 SVGVKIVYDKDELISMLETVFEWDSEVVIEKYIK-GEEITCSIFDGKQLPIISIRHAAEFFDYNAKYDDASTIEEVIELP 224 (307)
T ss_dssp -CCCEEECSHHHHHHHHHHHHHHCSEEEEEECCC-SEEEEEEEETTEECCCEEEEEEEEEETTEEEEEEEEEEEEECCCC
T ss_pred CCCEEEeCCHHHHHHHHHHHHhcCCCEEEECCcC-CEEEEEEEECCEEeeEEEEEcCCcccChhhcCCCCCCeEecCCCC
Confidence 9999999999999888776555556677899999 799999999999732 22222235 899987 3 3333367787
Q ss_pred hH----HHHHHHHHHHHhCCCc-EEEEeEEEcCCCCeEEEeecCCcccccccc------hhHHHHHHHHHHHHHHHhh
Q psy10366 157 DH----YKLWIDEVAELFGGLD-ICALEIIVGKDGKEHIIEVNDSALSLMGET------QEEDRRFIVDLVIQKMQVS 223 (340)
Q Consensus 157 ee----~~~~a~~aa~a~~Gld-iaGVDll~~~dG~~~VlEVN~s~~P~~~g~------~~~~~~~IA~~vi~~i~~~ 223 (340)
++ +++++.++.+++ |+. +++||++.+ +|+++|+|||.. |++.+. ....+.++++++.+.++..
T Consensus 225 ~~~~~~i~~~a~~~~~~l-g~~G~~~vD~~~~-~g~~~vlEiN~r--pg~~~~s~~~~~~~~~G~~~~~li~~ll~~a 298 (307)
T 3r5x_A 225 AELKERVNKASLACYKAL-KCSVYARVDMMVK-DGIPYVMEVNTL--PGMTQASLLPKSADAAGIHYSKLLDMIIETS 298 (307)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCSEEEEEEEEE-TTEEEEEEEESS--CCCSTTSHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-CCCceEEEEEEEE-CCeEEEEEEcCC--CCCCccCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 75 488889999998 666 999999999 688999999977 887654 4566778888777766643
No 13
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.89 E-value=1.3e-22 Score=192.51 Aligned_cols=201 Identities=13% Similarity=0.127 Sum_probs=139.0
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCC-----------ccc-ccEEEecC
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF-----------KEM-YPVVFKIG 77 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~-----------~~~-~PvVvKp~ 77 (340)
.+...||.+|+|++ |++.++.+|.|| ..+.++|+++| +|+++....... .++ ||+||||.
T Consensus 82 ~~~~~le~~gip~~g~~~~~~~~~~dK----~~~k~~l~~~G---ip~p~~~~~~~~~~~~~~~~~~~~~~g~PvvvKP~ 154 (317)
T 4eg0_A 82 QIQGALDFYGIRYTGSGVLGSALGLDK----FRTKLVWQQTG---VPTPPFETVMRGDDYAARATDIVAKLGLPLFVKPA 154 (317)
T ss_dssp HHHHHHHHHTCEESSCCHHHHHHHHCH----HHHHHHHHHTT---CCCCCEEEEETTSCHHHHHHHHHHHHCSCEEEEEC
T ss_pred HHHHHHHHcCCCeeCcCHHHHHHHhCH----HHHHHHHHHCC---cCCCCEEEEECchhHHHHHHHHHHhcCCCEEEEeC
Confidence 46777999999999 567999999999 45555689999 685443332221 223 89999999
Q ss_pred CCCcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCeEEE-EEEEecCC---CcccccC-Cc--ee
Q psy10366 78 HAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNYKA-FQRKSISG---NWKTNTG-SA--ML 150 (340)
Q Consensus 78 ~Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~v~A-~~R~s~~~---~WktNvg-ga--~~ 150 (340)
.|++|.|+.+++|.+++....+........+++||||+.|++++|.|+|+++.. ..+. ..+ +|.++.. +. ..
T Consensus 155 ~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~i~~G~E~~v~vl~~~~~~~~~i~-~~~~~~~~~~k~~~g~~~~~ 233 (317)
T 4eg0_A 155 SEGSSVAVLKVKTADALPAALSEAATHDKIVIVEKSIEGGGEYTACIAGDLDLPLIKIV-PAGEFYDYHAKYVANDTQYL 233 (317)
T ss_dssp C-----CCEEECSGGGHHHHHHHHTTTCSEEEEEECCCSSEEEEEEEETTCCCCCEEEE-C---------------CEEE
T ss_pred CCCCCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCCCCcEEEEEEECCcccceEEEe-eCCceechhhcccCCCeeEE
Confidence 999999999999999999887765545566789999998999999999998643 3333 233 3445553 22 22
Q ss_pred eecCCC----hHHHHHHHHHHHHhCCC-cEEEEeEEEcCCCCeEEEeecCCcccccccc------hhHHHHHHHHHHHHH
Q psy10366 151 EQIPMT----DHYKLWIDEVAELFGGL-DICALEIIVGKDGKEHIIEVNDSALSLMGET------QEEDRRFIVDLVIQK 219 (340)
Q Consensus 151 e~~~~~----ee~~~~a~~aa~a~~Gl-diaGVDll~~~dG~~~VlEVN~s~~P~~~g~------~~~~~~~IA~~vi~~ 219 (340)
.|..++ +++++++.++.+++ |+ ++++||++.+++|++||+|||.. |++... ....+.+..+++..-
T Consensus 234 ~P~~l~~~~~~~l~~~a~~~~~~l-g~~G~~~vD~~~~~~g~~~vlEiN~~--pg~t~~s~~p~~~~~~G~~~~~l~~~l 310 (317)
T 4eg0_A 234 IPCGLPAEQETELKRIARRAFDVL-GCTDWGRADFMLDAAGNAYFLEVNTA--PGMTDHSLPPKAARSIGIGYSELVVKV 310 (317)
T ss_dssp SSCSSCHHHHHHHHHHHHHHHHTT-TCCSEEEEEEEECTTCCEEEEEEESS--CCCSTTSHHHHHHHHTTCCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHh-CCCceEEEEEEEeCCCCEEEEEeeCC--CCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 233344 45678888888888 55 59999999999999999999976 988653 234566677766655
Q ss_pred HHh
Q psy10366 220 MQV 222 (340)
Q Consensus 220 i~~ 222 (340)
|+.
T Consensus 311 i~~ 313 (317)
T 4eg0_A 311 LSL 313 (317)
T ss_dssp HHT
T ss_pred HHH
Confidence 543
No 14
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.88 E-value=7.5e-22 Score=188.60 Aligned_cols=202 Identities=14% Similarity=0.157 Sum_probs=149.5
Q ss_pred HHHHHHHhCCCcccCC-hhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc----cc-ccEEEecCCCCcccc
Q psy10366 11 NLLLGFNIGGIPSINT-LQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK----EM-YPVVFKIGHAHSGFG 84 (340)
Q Consensus 11 ~vl~~le~~GvpviNs-~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~----~~-~PvVvKp~~Gs~G~G 84 (340)
.+...||.+|+|.+++ +.++.+|.|| ..+.++++++| +|+++........ ++ ||+||||..|++|.|
T Consensus 93 ~i~~~le~~gip~~g~~~~~~~~~~dK----~~~k~~l~~~G---ip~p~~~~~~~~~~~~~~~g~PvvvKP~~g~~s~G 165 (322)
T 2fb9_A 93 TVQGFLELLGKPYVGAGVAASALCMDK----DLSKRVLAQAG---VPVVPWVAVRKGEPPVVPFDPPFFVKPANTGSSVG 165 (322)
T ss_dssp HHHHHHHHHTCCBSSCCHHHHHHHHCH----HHHHHHHHHTT---CCCCCEEEEETTSCCCCCSCSCEEEEETTCCTTTT
T ss_pred HHHHHHHHcCCCeeCcCHHHHHHHcCH----HHHHHHHHHCC---CCCCCEEEEECchhhhhccCCCEEEEeCCCCCCCC
Confidence 4667789999999955 9999999999 45555689999 6854433222111 34 899999999999999
Q ss_pred eEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCe---EEE-EEEEecC--CCcccccC-Cc--eeeecCC
Q psy10366 85 KVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSN---YKA-FQRKSIS--GNWKTNTG-SA--MLEQIPM 155 (340)
Q Consensus 85 v~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~---v~A-~~R~s~~--~~WktNvg-ga--~~e~~~~ 155 (340)
+.+++|.+++....+........+++|+||+..++++|.|++++ +.. ..+.... -+|..|.. ++ ...|..+
T Consensus 166 v~~v~~~~el~~a~~~~~~~~~~vlvEe~I~G~~E~~v~vl~~~~~~~~~~~ei~~~~~~~~~~~k~~~g~~~~~~Pa~l 245 (322)
T 2fb9_A 166 ISRVERFQDLEAALALAFRYDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAPL 245 (322)
T ss_dssp CEEESSHHHHHHHHHHHTTTCSEEEEEECCSSCEEEEEEEESSSSCEEEEEEEEEEECCEEETTTEEECCEEEEESSCCC
T ss_pred EEEECCHHHHHHHHHHHHhcCCeEEEEeCCCCCeeEEEEEEeCCCceEeeeEEEeeCCCccCHHHcccCCCeEEEeCCCC
Confidence 99999999998887765444566789999984489999999884 432 2222111 13444542 22 2334445
Q ss_pred Ch----HHHHHHHHHHHHhCCC-cEEEEeEEEcCCCCeEEEeecCCcccccccc------hhHHHHHHHHHHHHHHHhh
Q psy10366 156 TD----HYKLWIDEVAELFGGL-DICALEIIVGKDGKEHIIEVNDSALSLMGET------QEEDRRFIVDLVIQKMQVS 223 (340)
Q Consensus 156 ~e----e~~~~a~~aa~a~~Gl-diaGVDll~~~dG~~~VlEVN~s~~P~~~g~------~~~~~~~IA~~vi~~i~~~ 223 (340)
++ ++++++.++.+++ |+ ++++||++.+ +|++||+|||.. |++..+ .+.++.++++++.+.++..
T Consensus 246 ~~~~~~~i~~~a~~~~~al-g~~G~~~vD~~~~-~g~~~vlEiN~r--pg~t~~s~~p~~~~~~G~~~~~l~~~li~~a 320 (322)
T 2fb9_A 246 DPGTQETVQELALKAYKVL-GVRGMARVDFFLA-EGELYLNELNTI--PGFTPTSMYPRLFEAGGVAYPELLRRLVELA 320 (322)
T ss_dssp CTTHHHHHHHHHHHHHHHH-TCCSEEEEEEEEE-TTEEEEEEEESS--CCCSSSCHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh-CCceEEEEEEEEE-CCcEEEEEEECC--CCCCcccHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 54 7789999999999 66 9999999999 899999999976 998754 3567888999887777654
No 15
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.88 E-value=5.3e-22 Score=192.22 Aligned_cols=203 Identities=13% Similarity=0.139 Sum_probs=145.5
Q ss_pred HHHHHHHhCCCcccCC-hhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCC--------------ccc-ccEEE
Q psy10366 11 NLLLGFNIGGIPSINT-LQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF--------------KEM-YPVVF 74 (340)
Q Consensus 11 ~vl~~le~~GvpviNs-~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~--------------~~~-~PvVv 74 (340)
.+...||.+|+|.+|+ +.++.+|.|| ..+.++++++| +|+++....... .++ ||+||
T Consensus 104 ~~~~~le~~gip~~g~~~~~~~~~~dK----~~~k~~l~~~G---ip~p~~~~~~~~~~~~~~~~~~~~~~~~~g~Pvvv 176 (364)
T 2i87_A 104 TIQGLFEVLDVPYVGNGVLSAASSMDK----LVMKQLFEHRG---LPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFV 176 (364)
T ss_dssp HHHHHHHHHTCCBSSCCHHHHHHHHSH----HHHHHHHHHHT---CCCCCEEEEEHHHHHHHHHHHHHHHHHHCCSSEEE
T ss_pred HHHHHHHHcCCCccCCCHHHHHHHcCH----HHHHHHHHHCC---CCCCCEEEEechhhcccchhHHHHHHHhcCCCEEE
Confidence 4667789999999976 8999999999 45555689999 684443222111 123 89999
Q ss_pred ecCCCCcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCe---EEEEEEEec-CC--CcccccC-C
Q psy10366 75 KIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSN---YKAFQRKSI-SG--NWKTNTG-S 147 (340)
Q Consensus 75 Kp~~Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~---v~A~~R~s~-~~--~WktNvg-g 147 (340)
||..|++|.|+.++++.+++....+........+++|+||+ |++++|.|++++ +....+... .+ +|..|.. +
T Consensus 177 KP~~g~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~-G~E~~v~vl~~~~~~~~~~~e~~~~~~~~~~~~k~~~g 255 (364)
T 2i87_A 177 KPANLGSSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVN-AREIEVAVLGNDYPEATWPGEVVKDVAFYDYKSKYKDG 255 (364)
T ss_dssp EESSCSSCTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCC-CEEEEEEEEESSSCEECCCEEECCSCCC----------
T ss_pred EeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCcc-CeEEEEEEEcCCCcEEeeeEEEecCCCcCCHHHcccCC
Confidence 99999999999999999999888776554456677899998 799999999874 332223211 12 3555553 2
Q ss_pred --ceeeecCCCh----HHHHHHHHHHHHhCCC-cEEEEeEEEcCCCCeEEEeecCCcccccccc------hhHHHHHHHH
Q psy10366 148 --AMLEQIPMTD----HYKLWIDEVAELFGGL-DICALEIIVGKDGKEHIIEVNDSALSLMGET------QEEDRRFIVD 214 (340)
Q Consensus 148 --a~~e~~~~~e----e~~~~a~~aa~a~~Gl-diaGVDll~~~dG~~~VlEVN~s~~P~~~g~------~~~~~~~IA~ 214 (340)
....+..+++ ++++++.++++++ |+ ++++||++.+++|++||+|||.. |++..+ .+.++.++++
T Consensus 256 ~~~~~~pa~l~~~~~~~i~~~a~~~~~al-g~~G~~~vD~~~~~~g~~~viEiN~r--pg~t~~s~~p~~~~~~G~~~~~ 332 (364)
T 2i87_A 256 KVQLQIPADLDEDVQLTLRNMALEAFKAT-DCSGLVRADFFVTEDNQIYINETNAM--PGFTAFSMYPKLWENMGLSYPE 332 (364)
T ss_dssp -CCEESSCSSCHHHHHHHHHHHHHHHHHT-TCCEEEEEEEEECTTCCEEEEEEESS--CCCSTTSHHHHHHHHTTCCHHH
T ss_pred CeeEEeCCCCCHHHHHHHHHHHHHHHHHc-CCCcEEEEEEEEecCCCEEEEEEeCC--CCCCchhHHHHHHHHhCCCHHH
Confidence 2333444554 6788999999998 66 79999999999999999999976 888643 2456778888
Q ss_pred HHHHHHHhhc
Q psy10366 215 LVIQKMQVSV 224 (340)
Q Consensus 215 ~vi~~i~~~~ 224 (340)
++...|+..+
T Consensus 333 l~~~li~~al 342 (364)
T 2i87_A 333 LITKLIELAK 342 (364)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766665443
No 16
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.88 E-value=1.1e-21 Score=189.01 Aligned_cols=203 Identities=17% Similarity=0.216 Sum_probs=148.4
Q ss_pred HHHHHHHhCCCcccCC-hhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCC-----Cccc-ccEEEecCCCCccc
Q psy10366 11 NLLLGFNIGGIPSINT-LQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPN-----FKEM-YPVVFKIGHAHSGF 83 (340)
Q Consensus 11 ~vl~~le~~GvpviNs-~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~-----~~~~-~PvVvKp~~Gs~G~ 83 (340)
.+-..||.+|+|++++ ..++.+|.|| ..+.++++++| +|+++...... ..++ ||+||||..|++|.
T Consensus 107 ~iq~~le~~gip~~g~~~~a~~~~~dK----~~~k~~l~~~G---ip~p~~~~~~~~~~~~~~~lg~PvvvKP~~~~~s~ 179 (346)
T 3se7_A 107 AIQGLLELSGIPYVGCDIQSSALCMDK----SLTYLVARSAG---IATPNFWTVTADEKIPTDQLTYPVFVKPARSGSSF 179 (346)
T ss_dssp HHHHHHHHHCCCBSSCCHHHHHHHHSH----HHHHHHHHHTT---CBCCCEEEEETTSCCCTTTCCSSEEEEESSCCTTT
T ss_pred HHHHHHHHcCCCeeCcCHHHHHHHhCH----HHHHHHHHHcC---cCcCCEEEEcCcHHHHHHhcCCCEEEEeCCCCCCc
Confidence 4566789999998875 8999999999 55556689999 68544332221 1234 89999999999999
Q ss_pred ceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECC----eEEEEEEEecCCCc-------ccccC---Cce
Q psy10366 84 GKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGS----NYKAFQRKSISGNW-------KTNTG---SAM 149 (340)
Q Consensus 84 Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~----~v~A~~R~s~~~~W-------ktNvg---ga~ 149 (340)
|+.++++.+++.............+++|+||+ |++++|.++++ ++..+.+....++| .++.. ...
T Consensus 180 Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~-G~E~~v~vl~~~~~~~~~~~~e~~~~~~~~d~~q~~~~ky~~~~~~~ 258 (346)
T 3se7_A 180 GVSKVAREEDLQGAVEAAREYDSKVLIEEAVI-GTEIGCAVMGNGPELITGEVDQITLSHGFFKIHQESTPESGSDNSAV 258 (346)
T ss_dssp TCEEECSHHHHHHHHHHHTTTCSEEEEEECCC-SEEEEEEEEEETTEEEECCCEEECCC--------------CGGGSCE
T ss_pred CEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC-CEEEEEEEEecCCCeEEEeeEEEecCCCCcCcccchhccccCCCeeE
Confidence 99999999999887776554556678999999 89999999976 33334443233333 33332 223
Q ss_pred eeecCCCh----HHHHHHHHHHHHhCCC-cEEEEeEEEcCCCCeEEEeecCCcccccccc------hhHHHHHHHHHHHH
Q psy10366 150 LEQIPMTD----HYKLWIDEVAELFGGL-DICALEIIVGKDGKEHIIEVNDSALSLMGET------QEEDRRFIVDLVIQ 218 (340)
Q Consensus 150 ~e~~~~~e----e~~~~a~~aa~a~~Gl-diaGVDll~~~dG~~~VlEVN~s~~P~~~g~------~~~~~~~IA~~vi~ 218 (340)
..+..+++ ++++++.++.+++ |+ ++++||++.+++|++||+|||.. |++.+. ....+.++++++.+
T Consensus 259 ~~pa~l~~~~~~~i~~~a~~~~~~l-g~~G~~~vD~~~~~~g~~~vlEiN~r--PG~t~~s~~p~~~~~~G~~~~~l~~~ 335 (346)
T 3se7_A 259 TVPADISTTSRSLVQDTAKAVYRAL-GCRGLSRVDLFLTEDGKVVLNEVNTF--PGMTSYSRYPRMMTAAGLSRADVIDR 335 (346)
T ss_dssp ESSCCCCHHHHHHHHHHHHHHHHHH-TCCEEEEEEEEECTTSCEEEEEEESS--CCCSTTCHHHHHHHHTTCCHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHh-CCceEEEEEEEEeCCCCEEEEEEeCC--CCCCcccHHHHHHHHhCCCHHHHHHH
Confidence 34455665 6788899999998 66 89999999999999999999966 998653 34677788887777
Q ss_pred HHHhhc
Q psy10366 219 KMQVSV 224 (340)
Q Consensus 219 ~i~~~~ 224 (340)
.|+..+
T Consensus 336 li~~a~ 341 (346)
T 3se7_A 336 LVSLAL 341 (346)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
No 17
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.87 E-value=4.1e-21 Score=187.60 Aligned_cols=204 Identities=14% Similarity=0.106 Sum_probs=150.3
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-----------cc-ccEEEecC
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-----------EM-YPVVFKIG 77 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-----------~~-~PvVvKp~ 77 (340)
.+...||.+|+|++ |++.++.+|.|| ..+.++++++| +|+++........ ++ ||+||||.
T Consensus 110 ~~~~lle~~gip~~G~~~~a~~~~~DK----~~~k~~l~~~G---ip~p~~~~~~~~~~~~~~~~~~~~~~g~PvvVKP~ 182 (377)
T 1ehi_A 110 TLQGLFKLLDKPYVGAPLRGHAVSFDK----ALTKELLTVNG---IRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAA 182 (377)
T ss_dssp HHHHHHHHTTCCBSSCCHHHHHHHHSH----HHHHHHHHTTT---CCCCCEEEECTTGGGGCCHHHHHHHHCSCEEEEES
T ss_pred HHHHHHHHcCCCEeCcCHHHHHHHcCH----HHHHHHHHHcC---CCCCCEEEEeccccchHHHHHHHHhcCCCEEEEeC
Confidence 45677999999999 999999999999 55556689999 6854433332211 13 89999999
Q ss_pred CCCcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECC---eEEEEEEEec-----CCCc---ccccC
Q psy10366 78 HAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGS---NYKAFQRKSI-----SGNW---KTNTG 146 (340)
Q Consensus 78 ~Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~---~v~A~~R~s~-----~~~W---ktNvg 146 (340)
.|.+|.|+.+++|.+++....+........+++|+||+..++++|.|+++ ++....+.-. .+.| ..+..
T Consensus 183 ~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~G~~E~~v~vl~~~~~~~~~~~ei~~~~~~~~~~~~d~~~k~~ 262 (377)
T 1ehi_A 183 NQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFV 262 (377)
T ss_dssp SCCTTTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCCCSCEEEEEEEESSSCEEEEEEEEECTTSSSSSCCCCHHHHTT
T ss_pred CCCCCcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCceEEEEEEcCCCcEEEeeEEEEecCCCCcCceeCHHhccc
Confidence 99999999999999999888776544455678999998449999999987 3544333322 2323 44442
Q ss_pred -C---ceeeecCCCh----HHHHHHHHHHHHhCCC-cEEEEeEEEcCCCCeEEEeecCCcccccccc------hhHHHHH
Q psy10366 147 -S---AMLEQIPMTD----HYKLWIDEVAELFGGL-DICALEIIVGKDGKEHIIEVNDSALSLMGET------QEEDRRF 211 (340)
Q Consensus 147 -g---a~~e~~~~~e----e~~~~a~~aa~a~~Gl-diaGVDll~~~dG~~~VlEVN~s~~P~~~g~------~~~~~~~ 211 (340)
+ ....|..+++ ++++++.++.+++ |+ ++++||++.+++|++||+|||.. |++..+ ...++.+
T Consensus 263 ~g~~~~~~~Pa~l~~~~~~~i~~~a~~~~~al-g~~G~~~vD~~~~~~g~~~vlEiN~r--pg~t~~s~~p~~~~a~G~~ 339 (377)
T 1ehi_A 263 DNSAVHFQIPAQLSPEVTKEVKQMALDAYKVL-NLRGEARMDFLLDENNVPYLGEPNTL--PGFTNMSLFKRLWDYSDIN 339 (377)
T ss_dssp CCTTCEEESSCCCCHHHHHHHHHHHHHHHHHT-TCCEEEEEEEEECTTCCEEEEEEESS--CCCSTTCGGGTGGGGGTCC
T ss_pred CCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHc-CCCcEEEEEEEEeCCCCEEEEEEeCC--CCCCcccHHHHHHHHhCCC
Confidence 2 2233445664 4678889999998 55 59999999998899999999976 887654 2467888
Q ss_pred HHHHHHHHHHhhc
Q psy10366 212 IVDLVIQKMQVSV 224 (340)
Q Consensus 212 IA~~vi~~i~~~~ 224 (340)
+++++...++..+
T Consensus 340 ~~~l~~~li~~al 352 (377)
T 1ehi_A 340 NAKLVDMLIDYGF 352 (377)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888777776544
No 18
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.87 E-value=2.6e-21 Score=185.68 Aligned_cols=203 Identities=13% Similarity=0.169 Sum_probs=148.8
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCC-----ccc-ccEEEecCCCCccc
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF-----KEM-YPVVFKIGHAHSGF 83 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~-----~~~-~PvVvKp~~Gs~G~ 83 (340)
.+...||.+|+|.+ |++.++.+|.|| ..+.++++++| +|+++....... ..+ ||+||||..|++|.
T Consensus 107 ~~~~~le~~gip~~g~~~~~~~~~~dK----~~~k~~l~~~G---ip~p~~~~~~~~~~~~~~~~~~PvvvKP~~~~~s~ 179 (343)
T 1e4e_A 107 SIQGLFELSGIPFVGCDIQSSAICMDK----SLTYIVAKNAG---IATPAFWVINKDDRPVAATFTYPVFVKPARSGSSF 179 (343)
T ss_dssp HHHHHHHHHTCCBSSCCHHHHHHHHSH----HHHHHHHHHTT---CBCCCEEEECTTCCCCGGGSCSCEEEEESSCCTTT
T ss_pred HHHHHHHHcCCCccCCCHHHHHHHhCH----HHHHHHHHHCC---CCcCCEEEEechhhhhhhccCCCEEEEeCCCCCCC
Confidence 35667899999998 679999999999 45555689999 685443322221 234 89999999999999
Q ss_pred ceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCe----EEEEEE-Eec--CCCcccccC-----Cce--
Q psy10366 84 GKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSN----YKAFQR-KSI--SGNWKTNTG-----SAM-- 149 (340)
Q Consensus 84 Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~----v~A~~R-~s~--~~~WktNvg-----ga~-- 149 (340)
|+.++++.+++....+........+++|+||+ |++++|.+++++ +....+ ... --+|.+|.. +..
T Consensus 180 Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~-G~E~~v~vl~~~~~~~~~~~~ei~~~~~~~~~~~k~~~~~~~g~~~~ 258 (343)
T 1e4e_A 180 GVKKVNSADELDYAIESARQYDSKILIEQAVS-GCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVI 258 (343)
T ss_dssp TCEEECSGGGHHHHHHHHTTTCSSEEEEECCC-SEEEEEEEEEETTCCEECCCEEEEESSSCCCGGGSSSGGGCCSSEEE
T ss_pred CEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC-CeEEEEEEEeCCCCeEEeeeEEEeeCCCccCHhhcccccCCCCCeeE
Confidence 99999999999888776544455677899998 899999999664 222233 321 134566653 222
Q ss_pred eeecCCC----hHHHHHHHHHHHHhCCC-cEEEEeEEEcCCCCeEEEeecCCcccccccc------hhHHHHHHHHHHHH
Q psy10366 150 LEQIPMT----DHYKLWIDEVAELFGGL-DICALEIIVGKDGKEHIIEVNDSALSLMGET------QEEDRRFIVDLVIQ 218 (340)
Q Consensus 150 ~e~~~~~----ee~~~~a~~aa~a~~Gl-diaGVDll~~~dG~~~VlEVN~s~~P~~~g~------~~~~~~~IA~~vi~ 218 (340)
..|..++ +++++++.++++++ |+ ++++||++.+++|++||+|||.. |++..+ .+.++.++++++.+
T Consensus 259 ~~p~~l~~~~~~~i~~~a~~~~~al-g~~G~~~vD~~~~~~g~~~viEiN~r--pg~t~~s~~p~~~~~~G~~~~~l~~~ 335 (343)
T 1e4e_A 259 TVPADLSAEERGRIQETVKKIYKTL-GCRGLARVDMFLQDNGRIVLNEVNTL--PGFTSYSRYPRMMAAAGISLPELIDR 335 (343)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHHHHT-TCEEEEEEEEEECTTCCEEEEEEESS--CCCSTTCHHHHHHHHTTCCHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHc-CCceEEEEEEEEeCCCCEEEEEeeCC--CCCCcccHHHHHHHHhCCCHHHHHHH
Confidence 2233355 46788999999998 66 69999999999999999999976 888642 34567888888877
Q ss_pred HHHhhc
Q psy10366 219 KMQVSV 224 (340)
Q Consensus 219 ~i~~~~ 224 (340)
.++..+
T Consensus 336 li~~a~ 341 (343)
T 1e4e_A 336 LIVLAL 341 (343)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776543
No 19
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.83 E-value=1.1e-19 Score=177.71 Aligned_cols=199 Identities=12% Similarity=0.066 Sum_probs=144.0
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCC--------ccc-ccEEEecCCCC
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF--------KEM-YPVVFKIGHAH 80 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~--------~~~-~PvVvKp~~Gs 80 (340)
.+...||.+|+|.+ |+..++.+|.|| ..+.++++++| +|+++...+... .++ ||+||||..|.
T Consensus 124 ~i~~~le~~gip~~G~~~~a~~~~~DK----~~~k~~l~~~G---ip~p~~~~~~~~~~~~~~~~~~lg~PvvVKP~~g~ 196 (367)
T 2pvp_A 124 KLASLLEFYRIAFIGPRIEASVLSYNK----YLTKLYAKDLG---IKTLDYVLLNEKNRANALDLMNFNFPFIVKPSNAG 196 (367)
T ss_dssp HHHHHHHHTTCCEESCCHHHHHHHHSH----HHHHHHHHHHT---CBCCCCEEECTTTGGGHHHHCCSCSCEEEEESSCC
T ss_pred HHHHHHHHcCCCccCCCHHHHHHHcCH----HHHHHHHHHCC---cCCCCEEEEeCCchHHHHHHhccCCCEEEEECCCC
Confidence 46677899999998 789999999999 55556689999 685443322221 134 89999999999
Q ss_pred cccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCc---EEEEEECCeEE-EEEEEecCC---CcccccC-C--cee
Q psy10366 81 SGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFD---VHVQKIGSNYK-AFQRKSISG---NWKTNTG-S--AML 150 (340)
Q Consensus 81 ~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~D---IRv~VIG~~v~-A~~R~s~~~---~WktNvg-g--a~~ 150 (340)
+|.|+.+++|.++|....+........+++|+||+..++ ++|.| +|+++ ...+....+ +|.++.. + ...
T Consensus 197 ss~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~G~~E~svi~v~v-~g~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~ 275 (367)
T 2pvp_A 197 SSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQGVKEYNLAGCKI-KKDFCFSYIEEPNKQEFLDFKQKYLDFSRNKA 275 (367)
T ss_dssp TTTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCTTCEEEEEEEEEE-TTEEEEEEEEETTTTEEECCCCSSCCSCCCSC
T ss_pred CCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCCCCceeeEEEEEE-CCEEEEEEEEEecCCceEcccccccCCCeeEE
Confidence 999999999999998877765444566788999984389 88998 98853 333432222 4555553 2 234
Q ss_pred eecCCC----hHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHHHh
Q psy10366 151 EQIPMT----DHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQV 222 (340)
Q Consensus 151 e~~~~~----ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i~~ 222 (340)
.|..++ +++++++.++.++++--++++||++.+ +|++||+|||.. |++..+---. +.++++.+.++.
T Consensus 276 ~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~-~g~~~vlEiN~r--pg~t~~s~~p--~~~~l~~~li~~ 346 (367)
T 2pvp_A 276 PKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVI-ENEVYLNEINPI--PGSLANYLFD--DFKTTLENLAQS 346 (367)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHTTTSTTCCEEEEEEEE-TTEEEEEEEESS--CGGGGGGGSS--SHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHcCCCCEEEEEEEEE-CCeEEEEEEeCC--CCCCcccccC--CHHHHHHHHHhC
Confidence 455566 456888888998883336999999999 888999999976 8875533222 666666555554
No 20
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.83 E-value=2.2e-19 Score=174.64 Aligned_cols=202 Identities=12% Similarity=0.185 Sum_probs=144.2
Q ss_pred HHHHHHHhCCCcccCC-hhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-----------cc-ccEEEecC
Q psy10366 11 NLLLGFNIGGIPSINT-LQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-----------EM-YPVVFKIG 77 (340)
Q Consensus 11 ~vl~~le~~GvpviNs-~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-----------~~-~PvVvKp~ 77 (340)
.+-..||.+|+|.+++ ..++.+|.|| ..+.++++++| +|+++........ ++ ||+||||.
T Consensus 115 ~iq~~le~~gip~~G~~~~a~~~~~DK----~~~k~~l~~~G---ip~p~~~~~~~~~~~~~~~~~~~~~lg~PvvVKP~ 187 (364)
T 3i12_A 115 SLQGMLRVANLPFVGSDVLSSAACMDK----DVAKRLLRDAG---LNIAPFITLTRTNRHAFSFAEVESRLGLPLFVKPA 187 (364)
T ss_dssp HHHHHHHHTTCCBSSCCHHHHHHHHCH----HHHHHHHHHTT---CCBCCEEEEETTTGGGCCHHHHHHHHCSSEEEEET
T ss_pred HHHHHHHHcCCCccCCCHHHHHHHHCH----HHHHHHHHHCC---CCCCCEEEEEccccchhhHHHHHHhcCCCEEEEEC
Confidence 4667799999999875 7999999999 55556689999 6855543332222 12 89999999
Q ss_pred CCCcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCe---EEEEEEEecCCC---ccccc-C---C
Q psy10366 78 HAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSN---YKAFQRKSISGN---WKTNT-G---S 147 (340)
Q Consensus 78 ~Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~---v~A~~R~s~~~~---WktNv-g---g 147 (340)
.|.+|.|+.+++|.+++....+........+++|+||+ |++++|.|++++ +....+....++ +..+. . .
T Consensus 188 ~ggss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~-G~E~~v~vl~~~~~~~~~~~ei~~~~~~~~~~~ky~~~~~~ 266 (364)
T 3i12_A 188 NQGSSVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIK-GREIECAVLGNDNPQASTCGEIVLNSEFYAYDTKYIDDNGA 266 (364)
T ss_dssp TCCTTTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCC-SEEEEEEEEESSSCEEEEEEEEECCTTCC--TTTTSGGGGC
T ss_pred CCCCCcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcC-CeEEEEEEEeCCCceEeeeEEEecCCCccCHHHcccCCCce
Confidence 99999999999999999887776555566678999998 599999999775 222222111222 33332 1 2
Q ss_pred ceeeecCCCh----HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccc------hhHHHHHHHHHHH
Q psy10366 148 AMLEQIPMTD----HYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGET------QEEDRRFIVDLVI 217 (340)
Q Consensus 148 a~~e~~~~~e----e~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~------~~~~~~~IA~~vi 217 (340)
....|..+++ ++++++.++.++++--+++.||++.+++|++||+|||.. |++..+ .+..+.+.++++.
T Consensus 267 ~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g~~~vlEiN~~--Pg~t~~s~~p~~~~a~G~~~~~l~~ 344 (364)
T 3i12_A 267 QVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTL--PGFTNISMYPKLWQASGLGYTDLIS 344 (364)
T ss_dssp EEESSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESS--CCCSTTCHHHHHHHTTTCCHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEecCCCEEEEEeeCC--CCCCCCCHHHHHHHHhCcCHHHHHH
Confidence 2233344554 567888888998843379999999999999999999965 998654 3455666777666
Q ss_pred HHHHh
Q psy10366 218 QKMQV 222 (340)
Q Consensus 218 ~~i~~ 222 (340)
..|+.
T Consensus 345 ~li~~ 349 (364)
T 3i12_A 345 RLIEL 349 (364)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65553
No 21
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.83 E-value=9.9e-20 Score=178.48 Aligned_cols=203 Identities=12% Similarity=0.113 Sum_probs=140.6
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-----------cc-cc-EEEec
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-----------EM-YP-VVFKI 76 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-----------~~-~P-vVvKp 76 (340)
.+-..||.+|+|.+ ++..++.+|.|| ..+.++++++| +|+++........ ++ || +||||
T Consensus 115 ~iq~lle~~gipy~G~~~~a~~~~~DK----~~~k~~l~~~G---Ip~p~~~~~~~~~~~~~~~~~~~~~lg~P~vvVKP 187 (372)
T 3tqt_A 115 ALQGLLELLNLPYVGANVQSSAVCMEK----DLTKTVLRAGG---IPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVKA 187 (372)
T ss_dssp HHHHHHHHTTCCBSSCCHHHHHHHHSH----HHHHHHHHHTT---CCBCCCEEECTTSCCTTHHHHHHHHC---CEEEEE
T ss_pred HHHHHHHHcCCCeeCcCHHHHHHHhCH----HHHHHHHHHCC---cCCCCEEEEechhhhhhHHHHHHHhcCCCeEEEEE
Confidence 46677999999987 568999999999 45555689999 6855443332221 13 99 99999
Q ss_pred CCCCcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCe-EE--EEEEEecC-C--CcccccC-C--
Q psy10366 77 GHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSN-YK--AFQRKSIS-G--NWKTNTG-S-- 147 (340)
Q Consensus 77 ~~Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~-v~--A~~R~s~~-~--~WktNvg-g-- 147 (340)
..|.+|.|+.+++|.++|....+....+...+++|+||+ |++++|.|++++ +. ...+.... + +|.++.. +
T Consensus 188 ~~ggss~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~-G~E~~v~vl~~~~~~~~~~~ei~~~~~~~d~~~ky~~g~~ 266 (372)
T 3tqt_A 188 VSLGSSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR-GREIECAVLGNGAPKASLPGEIIPHHDYYSYDAKYLDPNG 266 (372)
T ss_dssp SSCCSGGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC-SEEEEEEEEESSSCEECCCEEEECC---------------
T ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC-CEEEEEEEEeCCCceEeeeEEEecCCCccchhhcccCCCc
Confidence 999999999999999999887766544456678999999 899999999876 21 12222111 1 3444442 1
Q ss_pred -ceeeecCCCh----HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccc------hhHHHHHHHHHH
Q psy10366 148 -AMLEQIPMTD----HYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGET------QEEDRRFIVDLV 216 (340)
Q Consensus 148 -a~~e~~~~~e----e~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~------~~~~~~~IA~~v 216 (340)
....|..+++ +++++|.++.++++--+++.||++.+++|++||+|||.. |++... .+..+.+.++++
T Consensus 267 ~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~dg~~~vlEINt~--PG~t~~S~~p~~~~~~G~~~~~li 344 (372)
T 3tqt_A 267 ATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDFFVTPNNKVLVNEINTI--PGFTNISMYPKMWEASGLPCPNLL 344 (372)
T ss_dssp CEEESCCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESS--CCCSTTCHHHHHHHHTTCCHHHHH
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEeCCCcEEEEEEECC--CCcCccCHHHHHHHHhCCCHHHHH
Confidence 2223344554 568889999999844459999999999999999999965 997653 345566777766
Q ss_pred HHHHHhh
Q psy10366 217 IQKMQVS 223 (340)
Q Consensus 217 i~~i~~~ 223 (340)
...|+..
T Consensus 345 ~~li~~a 351 (372)
T 3tqt_A 345 DQLIELA 351 (372)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 22
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.83 E-value=9.1e-20 Score=178.44 Aligned_cols=203 Identities=12% Similarity=0.110 Sum_probs=148.1
Q ss_pred HHHHHHHhCCCcccCC-hhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc---------cc-ccEEEecCCC
Q psy10366 11 NLLLGFNIGGIPSINT-LQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK---------EM-YPVVFKIGHA 79 (340)
Q Consensus 11 ~vl~~le~~GvpviNs-~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~---------~~-~PvVvKp~~G 79 (340)
.+-..||.+|+|.+++ ..++.+|.|| ..+.++++++| +|+++........ ++ ||+||||..|
T Consensus 126 ~iq~lle~~gip~vG~~~~a~~~~~DK----~~~k~~l~~~G---Ip~p~~~~~~~~~~~~~~~~~~~lg~PvvVKP~~g 198 (373)
T 3lwb_A 126 TIQGLLELAGVPYVGAGVLASAVGMDK----EFTKKLLAADG---LPVGAYAVLRPPRSTLHRQECERLGLPVFVKPARG 198 (373)
T ss_dssp HHHHHHHHHTCCBSSSCHHHHHHHHBH----HHHHHHHHHTT---CCBCCEEEECTTCCCCCHHHHHHHCSCEEEEESBC
T ss_pred HHHHHHHHcCCCccCCcHHHHHHHcCH----HHHHHHHHHcC---cCCCCEEEEECcccchhHHHHHhcCCCEEEEeCCC
Confidence 3556689999999887 8999999999 45555689999 6855543332222 13 9999999999
Q ss_pred CcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCe-----EEE-EEEEec--CC------Cccccc
Q psy10366 80 HSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSN-----YKA-FQRKSI--SG------NWKTNT 145 (340)
Q Consensus 80 s~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~-----v~A-~~R~s~--~~------~WktNv 145 (340)
.+|.|+.+++|.++|....+........+++|+||+ |++++|.|++++ +.. ..+... .+ +|.++.
T Consensus 199 gss~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~-G~E~~v~vl~~~~~~~~~~~~~ei~~~~~~~~~~~~~d~~~ky 277 (373)
T 3lwb_A 199 GSSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS-GRELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKY 277 (373)
T ss_dssp STTTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE-EEEEEEEEEECTTSCEEECCCEEEECCSTTCSEESSSCHHHHH
T ss_pred CCCCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC-CeEEEEEEEECCCCceEEeeeeEEEccCCCCccccccchhhcc
Confidence 999999999999999888776655556678999999 899999999764 211 223221 12 344444
Q ss_pred C-C--ceeeecCCC----hHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCccccccc------chhHHHHHH
Q psy10366 146 G-S--AMLEQIPMT----DHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGE------TQEEDRRFI 212 (340)
Q Consensus 146 g-g--a~~e~~~~~----ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g------~~~~~~~~I 212 (340)
. + ....|..++ +++++++.++.++++.-+++.||++.+++|+ ||+|||.. |++.. +.+..+.+.
T Consensus 278 ~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~dg~-~vlEIN~~--PG~t~~S~~p~~~~a~Gi~~ 354 (373)
T 3lwb_A 278 LDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGP-VINEINTM--PGFTTISMYPRMWAASGVDY 354 (373)
T ss_dssp TCTTCEEESSCCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEETTEE-EEEEEESS--CCCSTTSHHHHHHHHTTCCH
T ss_pred cCCCceEEeCCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEECCCC-EEEEecCC--CCCCcccHHHHHHHHhCCCH
Confidence 2 2 222344455 4678899999999843389999999999998 99999965 98765 235677788
Q ss_pred HHHHHHHHHhhc
Q psy10366 213 VDLVIQKMQVSV 224 (340)
Q Consensus 213 A~~vi~~i~~~~ 224 (340)
++++...|+..+
T Consensus 355 ~~li~~li~~a~ 366 (373)
T 3lwb_A 355 PTLLATMIETTL 366 (373)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887777766443
No 23
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.82 E-value=1.5e-19 Score=175.13 Aligned_cols=200 Identities=16% Similarity=0.155 Sum_probs=142.1
Q ss_pred HHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc----------cc-ccEEEecCCC
Q psy10366 12 LLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK----------EM-YPVVFKIGHA 79 (340)
Q Consensus 12 vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~----------~~-~PvVvKp~~G 79 (340)
+-..||.+|||.+ .++.++.+|.|| ..+.++++++| +|+++...+.... ++ ||+||||..|
T Consensus 115 ~q~~le~~gip~~G~~~~a~~~~~DK----~~~k~~l~~~G---ip~p~~~~~~~~~~~~~~~~~~~~lg~PvvVKP~~g 187 (357)
T 4fu0_A 115 LQGIFELAGIPVVGCDTLSSALCMDK----DRAHKLVSLAG---ISVPKSVTFKRFNEEAAMKEIEANLTYPLFIKPVRA 187 (357)
T ss_dssp HHHHHHHTTCCBSSCCHHHHHHHHCH----HHHHHHHHHTT---CBCCCEEEEEGGGHHHHHHHHHHHCCSSEEEEETTC
T ss_pred HHHHHHHCCCcEECcCHHHHHHHhCH----HHHHHHHHHCC---CCCCCEEeecCCChHHHHHHHHHhcCCCEEEEECCC
Confidence 4567999999987 899999999999 45556689999 6854433322111 23 9999999999
Q ss_pred CcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCeE--E---EEEEEe-cCCCccccc--CCc-ee
Q psy10366 80 HSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNY--K---AFQRKS-ISGNWKTNT--GSA-ML 150 (340)
Q Consensus 80 s~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~v--~---A~~R~s-~~~~WktNv--gga-~~ 150 (340)
.+|+|+.+++|.++|.............+++|+||+ |+++.|.|+|+.. + ...... .--++.... ++. ..
T Consensus 188 g~s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i~-G~e~~v~vl~~~~~~~~~v~~~~~~~~~~d~~~k~~~~~~~~~ 266 (357)
T 4fu0_A 188 GSSFGITKVIEKQELDAAIELAFEHDTEVIVEETIN-GFEVGCAVLGIDELIVGRVDEIELSSGFFDYTEKYTLKSSKIY 266 (357)
T ss_dssp SSSTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCC-SEEEEEEEEESSSEEECCCEEEEECHHHHTSCSBCSSCCEEEE
T ss_pred CCCCceEEeccHHhHHHHHHHHhccCCeEEEEEecC-CEEEEEEEEecCCceEEEEEEEEcccccccccccccCCCceEe
Confidence 999999999999999988776655667788999995 7899999997752 1 122221 111222222 222 23
Q ss_pred eecCCCh----HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccc------hhHHHHHHHHHHHHHH
Q psy10366 151 EQIPMTD----HYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGET------QEEDRRFIVDLVIQKM 220 (340)
Q Consensus 151 e~~~~~e----e~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~------~~~~~~~IA~~vi~~i 220 (340)
.+..+++ +.+++|.+++++++.-+++.||++.++||++||+|||.. ||+... -+.++.+.++++-.-|
T Consensus 267 ~pa~l~~~~~~~i~~~A~~~~~aLg~~G~~~VDf~~~~dg~~~vlEvNt~--PG~t~~S~~p~~~~~~G~~~~~li~~li 344 (357)
T 4fu0_A 267 MPARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYTPSGEIVFNEVNTI--PGFTSHSRYPNMMKGIGLSFSQMLDKLI 344 (357)
T ss_dssp SSCSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESS--CCCSTTCHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEeCCCCEEEEEEeCC--CCCCcccHHHHHHHHhCcCHHHHHHHHH
Confidence 3445554 457788889999855579999999999999999999965 988542 1345666666554444
Q ss_pred H
Q psy10366 221 Q 221 (340)
Q Consensus 221 ~ 221 (340)
+
T Consensus 345 ~ 345 (357)
T 4fu0_A 345 G 345 (357)
T ss_dssp H
T ss_pred H
Confidence 3
No 24
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.82 E-value=2.4e-19 Score=176.31 Aligned_cols=201 Identities=12% Similarity=0.160 Sum_probs=139.7
Q ss_pred HHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-----------cc-ccEEEecCC
Q psy10366 12 LLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-----------EM-YPVVFKIGH 78 (340)
Q Consensus 12 vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-----------~~-~PvVvKp~~ 78 (340)
+-..||.+|+|.+ |+..++.+|.|| ..+.++++++| +|+++........ ++ ||+||||..
T Consensus 135 iq~lle~~gipy~G~~~~a~~~~~DK----~~~k~~l~~~G---Ip~p~~~~~~~~~~~~~~~~~~~~~lg~PvvVKP~~ 207 (386)
T 3e5n_A 135 LQGLLRMANLPFVGSGVLGSAVAMDK----DMAKRVLRDAR---LAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVKPAN 207 (386)
T ss_dssp HHHHHHHTTCCBSSCCHHHHHHHHBH----HHHHHHHHHTT---CCBCCEEEEEHHHHTTCCHHHHHHHHCSSEEEEESB
T ss_pred HHHHHHHcCCCccCCCHHHHHHHhCH----HHHHHHHHHCC---CCCCCEEEEeCcccchhhHHHHHHhcCCCEEEEECC
Confidence 5567999999987 678999999999 45555689999 6854433322111 23 899999999
Q ss_pred CCcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCeE-EEE---EEEecCC--CcccccC----Cc
Q psy10366 79 AHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSNY-KAF---QRKSISG--NWKTNTG----SA 148 (340)
Q Consensus 79 Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~v-~A~---~R~s~~~--~WktNvg----ga 148 (340)
|.+|.|+.+++|.+++....+........+++|+||+ |++++|.|++++. .+. .+....+ +|..+.. ..
T Consensus 208 ggss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~-G~E~~v~vl~~~~~~~~~~gei~~~~~~~d~~~ky~~~~~~~ 286 (386)
T 3e5n_A 208 QGSSVGVSQVRTADAFAAALALALAYDHKVLVEAAVA-GREIECAVLGNAVPHASVCGEVVVHDAFYSYATKYISEHGAE 286 (386)
T ss_dssp SCSSTTCEEECSGGGHHHHHHHHTTTCSEEEEEECCC-SEEEEEEEECSSSCEEEEEEEECC-----------------C
T ss_pred CCcCCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCC-CeEEEEEEEeCCCceEEEeEEEEeCCcccchhcccCCCCCeE
Confidence 9999999999999999888776554556678999998 6999999998763 221 2222112 3444431 22
Q ss_pred eeeecCCCh----HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccc------hhHHHHHHHHHHHH
Q psy10366 149 MLEQIPMTD----HYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGET------QEEDRRFIVDLVIQ 218 (340)
Q Consensus 149 ~~e~~~~~e----e~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~------~~~~~~~IA~~vi~ 218 (340)
..-|..+++ ++++++.++.++++--+++.||++.+++|++||+|||.. |++... .+..+.+..+++..
T Consensus 287 ~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~dg~~~vlEiN~~--PG~t~~S~~p~~~~~~Gi~~~~li~~ 364 (386)
T 3e5n_A 287 IVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCADGRIVINEVNTL--PGFTRISVYPKLWQASGLDYRGLITR 364 (386)
T ss_dssp EESSCSSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECTTCCEEEEEEESS--CCCSTTCHHHHHHHTTTCCHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEECCCcEEEEEeECC--CCCCccCHHHHHHHHhCCCHHHHHHH
Confidence 333344554 567888899999954469999999999999999999966 987553 23445566666555
Q ss_pred HHHh
Q psy10366 219 KMQV 222 (340)
Q Consensus 219 ~i~~ 222 (340)
.|+.
T Consensus 365 li~~ 368 (386)
T 3e5n_A 365 LIEL 368 (386)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 25
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.81 E-value=4e-19 Score=167.41 Aligned_cols=194 Identities=14% Similarity=0.093 Sum_probs=129.9
Q ss_pred HHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCccc-ccEEEecCCCCcccceEEecCh
Q psy10366 13 LLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM-YPVVFKIGHAHSGFGKVRVESN 91 (340)
Q Consensus 13 l~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~~-~PvVvKp~~Gs~G~Gv~lv~~~ 91 (340)
+..||..|+|++|++.++..|.||. .+.++|+++| +|+ |.+ +.+..++ ||+||||..|++|+|+.+++|.
T Consensus 78 ~~~le~~g~~~~~~~~~~~~~~dK~----~~~~~l~~~g---ip~-p~~-~~~~~~l~~P~vvKP~~g~~s~Gv~~v~~~ 148 (334)
T 2r85_A 78 IELVENMKVPYFGNKRVLRWESDRN----LERKWLKKAG---IRV-PEV-YEDPDDIEKPVIVKPHGAKGGKGYFLAKDP 148 (334)
T ss_dssp HHHHHTCCSCBBSCTTHHHHHHSHH----HHHHHHHHTT---CCC-CCB-CSCGGGCCSCEEEEECC----TTCEEESSH
T ss_pred HHHHHHcCCCccCCHHHHHHHHhHH----HHHHHHHHcC---CCC-CCc-cCChHHcCCCEEEEeCCCCCCCCEEEECCH
Confidence 4567999999999999999999994 4445689999 684 444 4334456 9999999999999999999999
Q ss_pred hhHHHHHHHHHh-----hCceEEeecCCCC-CCc-----------EEEEEECCeEEEEEEEecCCCc--------ccccC
Q psy10366 92 QDFQDMAGVVAV-----ANTYCTTEPYIDS-KFD-----------VHVQKIGSNYKAFQRKSISGNW--------KTNTG 146 (340)
Q Consensus 92 ~~l~~i~~~l~~-----~~~~~~vQefI~~-g~D-----------IRv~VIG~~v~A~~R~s~~~~W--------ktNvg 146 (340)
+++....+.+.. ....+++||||+. .++ ++++++++++... ..+-+ ..|.+
T Consensus 149 ~el~~~~~~~~~~~~~~~~~~~lvee~i~G~e~~~~~~~~~~~~~v~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~ 224 (334)
T 2r85_A 149 EDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESN----VDAIGRIPAKDQLEFDMD 224 (334)
T ss_dssp HHHHHHHHHHHCCCSGGGCCSEEEEECCCCEEEEEEEEEETTTTEEEEEEEEEEEEEE----GGGGGGSCHHHHTTSCCC
T ss_pred HHHHHHHHHHHhhcccCCCCcEEEEeccCCceeEEEEeecCcCceeeeeeeccEEEec----cCcccccccccccccccC
Confidence 998887765432 1245678999993 334 3333334443211 01111 11111
Q ss_pred -----CceeeecCCC----hHHHHHHHHHHHHh-----CCCcEEEEeEEEcCCCCeEEEeecCCcccccc-cc-------
Q psy10366 147 -----SAMLEQIPMT----DHYKLWIDEVAELF-----GGLDICALEIIVGKDGKEHIIEVNDSALSLMG-ET------- 204 (340)
Q Consensus 147 -----ga~~e~~~~~----ee~~~~a~~aa~a~-----~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~-g~------- 204 (340)
.+.. +..++ +++++++.++++++ +..++++||++.+++|+++|+|||.. |+-. .+
T Consensus 225 ~~~~~~g~~-p~~l~~~~~~~i~~~a~~~~~~l~~~~~~~~G~~~vd~~~~~~g~~~viEiN~R--~g~~~~~~~~g~~~ 301 (334)
T 2r85_A 225 ITYTVIGNI-PIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISAR--IVAGTNIFVNGSPY 301 (334)
T ss_dssp CCEEEEEEE-ECCCCGGGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECTTSCEEEEEEECS--CCGGGGGGTTCCTT
T ss_pred CceeeeCCC-CcccCHHHHHHHHHHHHHHHHHHHhhcccccccEEEEEEECCCCCEEEEEEeCC--cCCCceeeecCccc
Confidence 1111 44454 67788999999999 56789999999998999999999975 4432 11
Q ss_pred -------hhHHHHHHHHHHHHHHHh
Q psy10366 205 -------QEEDRRFIVDLVIQKMQV 222 (340)
Q Consensus 205 -------~~~~~~~IA~~vi~~i~~ 222 (340)
.-..+..||..+...+++
T Consensus 302 ~~l~~~~~~~~~~~~~~~i~~~~~~ 326 (334)
T 2r85_A 302 TWLRYDRPVSTGRRIAMEIREAIEN 326 (334)
T ss_dssp GGGTCSSCCCHHHHHHHHHHHHHHT
T ss_pred hheeecCcccHHHHHHHHHHHHHHh
Confidence 124577788877777763
No 26
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.81 E-value=3.7e-19 Score=175.18 Aligned_cols=201 Identities=13% Similarity=0.129 Sum_probs=132.6
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcC-CCCCCcccccccCCCc-----------cc-ccEEEec
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLG-KENFPLIDITYYPNFK-----------EM-YPVVFKI 76 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G-~~~~P~~~~t~~~~~~-----------~~-~PvVvKp 76 (340)
.+-..||.+|+|.+ |+..++.+|.|| ..+.++++++| + |+++........ ++ ||+||||
T Consensus 136 ~iq~lle~~gipy~G~~~~a~~~~~DK----~~~k~~l~~~G~I---pvp~~~~~~~~~~~~~~~~~~~~~lg~PvvVKP 208 (383)
T 3k3p_A 136 SIQGFLEVLKMPYVGTNILSSSVAMDK----ITTNQVLESATTI---PQVAYVALIEGEPLESKLAEVEEKLIYPVFVKP 208 (383)
T ss_dssp HHHHHHHHTTCCBSSCCHHHHHHHHCH----HHHHHHHHHHCCC---CBCCEEEEETTSCHHHHHHHHHHHCCSSEEEEE
T ss_pred HHHHHHHHcCCCccCCCHHHHHHHhCH----HHHHHHHHhCCCc---CCCCEEEEeCccchhHHHHHHHHhcCCCEEEEe
Confidence 56677999999987 679999999999 45555688999 6 744433332221 23 8999999
Q ss_pred CCCCcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCe-EEE---EEEEecC--CCcccccC-C--
Q psy10366 77 GHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSN-YKA---FQRKSIS--GNWKTNTG-S-- 147 (340)
Q Consensus 77 ~~Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~-v~A---~~R~s~~--~~WktNvg-g-- 147 (340)
..|.+|.|+.+++|.+++...++........+++|+||+ |++++|.|+++. +.+ ..+.... -+|..+.. +
T Consensus 209 ~~ggss~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~-G~E~~v~vl~d~~~~~~~~~ei~~~~~~~d~~~ky~~g~~ 287 (383)
T 3k3p_A 209 ANMGSSVGISKAENRTDLKQAIALALKYDSRVLIEQGVD-AREIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYIDNKI 287 (383)
T ss_dssp CC------CEEESSHHHHHHHHHHHHHHCSEEEEEECCC-SEEEEEEEEESSSCEECCCEEEC-----------------
T ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC-CeEEEEEEEeCCCeeEEeeEEEecCCCccchhhcccCCCe
Confidence 999999999999999999888776555566678999998 899999999774 222 2222111 13444442 2
Q ss_pred ceeeecCCCh----HHHHHHHHHHHHhCCC-cEEEEeEEEcCCCCeEEEeecCCcccccccc------hhHHHHHHHHHH
Q psy10366 148 AMLEQIPMTD----HYKLWIDEVAELFGGL-DICALEIIVGKDGKEHIIEVNDSALSLMGET------QEEDRRFIVDLV 216 (340)
Q Consensus 148 a~~e~~~~~e----e~~~~a~~aa~a~~Gl-diaGVDll~~~dG~~~VlEVN~s~~P~~~g~------~~~~~~~IA~~v 216 (340)
....|..+++ ++++++.++.+++ |+ +++.||++.+++|++||+|||.. |++... .+..+.+..+++
T Consensus 288 ~~~~Pa~l~~~~~~~i~~~a~~~~~aL-g~~G~~~vDf~~~~~g~~~vlEINtr--PG~t~~S~~p~~~~a~Gi~~~~li 364 (383)
T 3k3p_A 288 TMAIPAEIDPVIVEKMRDYAATAFRTL-GCCGLSRCDFFLTEDGKVYLNELNTM--PGFTQWSMYPLLWENMGLSYSVLI 364 (383)
T ss_dssp CEESSCCCCHHHHHHHHHHHHHHHHHT-TCCEEEEEEEEECTTCCEEEEEEESS--CCCC--CHHHHHHHHTTCCHHHHH
T ss_pred eEEecCCCCHHHHHHHHHHHHHHHHHc-CCceEEEEEEEEECCCCEEEEEeeCC--CCCCcccHHHHHHHHhCCCHHHHH
Confidence 2333344444 5578888889998 55 59999999999999999999966 987542 234455666665
Q ss_pred HHHHHh
Q psy10366 217 IQKMQV 222 (340)
Q Consensus 217 i~~i~~ 222 (340)
...|+.
T Consensus 365 ~~li~~ 370 (383)
T 3k3p_A 365 EELVSL 370 (383)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 27
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.80 E-value=1.3e-19 Score=172.54 Aligned_cols=178 Identities=12% Similarity=0.044 Sum_probs=130.8
Q ss_pred hHHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCccc-ccEEEecCCCCcccceEE
Q psy10366 9 HKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM-YPVVFKIGHAHSGFGKVR 87 (340)
Q Consensus 9 ~r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~~-~PvVvKp~~Gs~G~Gv~l 87 (340)
...++..|+..|.++.|+++++.+|.|| ..+.+++++ | +| +|.++. .++ +|+||||..|++|.|+.+
T Consensus 84 l~~~~~~l~~~g~~~g~~~~~~~~~~dK----~~~~~~l~~-G---ip-~p~~~~---~~~~~P~vvKP~~g~gs~Gv~~ 151 (305)
T 3df7_A 84 LYTLTKKAEKYCENLGSSSRAIAVTSDK----WELYKKLRG-E---VQ-VPQTSL---RPLDCKFIIKPRTACAGEGIGF 151 (305)
T ss_dssp HHHHHHHHHTTSEESSCCHHHHHHHTSH----HHHHHHHTT-T---SC-CCCEES---SCCSSSEEEEESSCC----CBC
T ss_pred HHHHHHHHHhcCCccCCCHHHHHHhcCH----HHHHHHHHh-C---CC-CCCEec---ccCCCCEEEEeCCCCCCCCEEE
Confidence 3457888888898899999999999999 455556888 9 68 455554 244 999999999999999999
Q ss_pred ecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECC-eEEEEEEEecCCCcccccC-CceeeecCCC----hHHHH
Q psy10366 88 VESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGS-NYKAFQRKSISGNWKTNTG-SAMLEQIPMT----DHYKL 161 (340)
Q Consensus 88 v~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~-~v~A~~R~s~~~~WktNvg-ga~~e~~~~~----ee~~~ 161 (340)
+++ ....+++|+||+ |++++|.+++| .+..+.+. ..|..+.. .+...+..++ ++.++
T Consensus 152 v~~-------------~~~~~lvEe~I~-G~e~sv~v~~g~~~~~~~~~---~~~~~~~~~~g~~~p~~l~~~~~~~i~~ 214 (305)
T 3df7_A 152 SDE-------------VPDGHIAQEFIE-GINLSVSLAVGEDVKCLSVN---EQIINNFRYAGAVVPARISDEVKREVVE 214 (305)
T ss_dssp CSS-------------CCTTEEEEECCC-SEEEEEEEEESSSEEEEEEE---EEEEETTEEEEEEESCCCCHHHHHHHHH
T ss_pred Eec-------------CCCCEEEEeccC-CcEEEEEEEeCCeEEEEEEe---eEeccCceeccccccCCCCHHHHHHHHH
Confidence 998 344566899999 89999999954 44333321 12444421 2234445555 67788
Q ss_pred HHHHHHHHh-CCCcEEEEeEEEcCCCCeEEEeecCCccccc--ccchhHHHHHHHHHHHHH
Q psy10366 162 WIDEVAELF-GGLDICALEIIVGKDGKEHIIEVNDSALSLM--GETQEEDRRFIVDLVIQK 219 (340)
Q Consensus 162 ~a~~aa~a~-~GldiaGVDll~~~dG~~~VlEVN~s~~P~~--~g~~~~~~~~IA~~vi~~ 219 (340)
++.++++++ +-.++++||++.+ |++||+|||.. |++ ..+...++.++++++++.
T Consensus 215 ~a~~~~~~l~g~~G~~~vD~~~~--~~~~viEiNpR--~~~~~~~~~~~~G~~~~~~~~~~ 271 (305)
T 3df7_A 215 EAVRAVECVEGLNGYVGVDIVYS--DQPYVIEINAR--LTTPVVAFSRAYGASVADLLAGG 271 (305)
T ss_dssp HHHHHHTTSTTCCEEEEEEEEES--SSEEEEEEESS--CCGGGGGHHHHHSCCHHHHHTTC
T ss_pred HHHHHHHHcCCCcCceEEEEEEC--CCEEEEEEcCC--CCCCHHHHHHHHCCCHHHHHHhc
Confidence 888888887 5468999999996 67999999977 776 556778899999998876
No 28
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=99.80 E-value=2.7e-19 Score=173.29 Aligned_cols=178 Identities=15% Similarity=0.212 Sum_probs=125.9
Q ss_pred HHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc----cc-ccEEEecCCCC-ccc
Q psy10366 10 KNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK----EM-YPVVFKIGHAH-SGF 83 (340)
Q Consensus 10 r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~----~~-~PvVvKp~~Gs-~G~ 83 (340)
-.++..|+..|+|+.|+++++.+|.|| ..+.++++++| +|+++...+.... ++ ||+||||..|+ +|+
T Consensus 75 ~~~~~~l~~~gi~~~~~~~~~~~~~dK----~~~~~~l~~~g---ip~p~~~~~~~~~~~~~~~~~P~vvKp~~~~y~g~ 147 (380)
T 3ax6_A 75 VQTLKKLYNEGYKIHPSPYTLEIIQDK----FVQKEFLKKNG---IPVPEYKLVKDLESDVREFGFPVVQKARKGGYDGR 147 (380)
T ss_dssp HHHHHHHHHTTCEESSCHHHHHHHHSH----HHHHHHHHHTT---CCCCCEEECSSHHHHHHTTCSSEEEEESCCC----
T ss_pred HHHHHHHHHCCCeECCCHHHHHHhcCH----HHHHHHHHHcC---CCCCCeEEeCCHHHHHHhcCCCEEEEecCCCCCCC
Confidence 456778999999999999999999999 44445589999 6844433232221 23 89999999999 999
Q ss_pred ceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECC---eEEEEEEEecCCCc---ccccCCceeeecCCCh
Q psy10366 84 GKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGS---NYKAFQRKSISGNW---KTNTGSAMLEQIPMTD 157 (340)
Q Consensus 84 Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~---~v~A~~R~s~~~~W---ktNvgga~~e~~~~~e 157 (340)
|+.+++|.+++....+ ..+++||||+.|++++|.++++ ++..+-.. .+| +.+.......+.++++
T Consensus 148 Gv~~v~~~~el~~~~~------~~~lvEe~i~~g~e~sv~~~~~~~G~~~~~~~~---~~~~~~~~~~~~~~~~p~~l~~ 218 (380)
T 3ax6_A 148 GVFIIKNEKDLENAIK------GETYLEEFVEIEKELAVMVARNEKGEIACYPVV---EMYFDEDANICDTVIAPARIEE 218 (380)
T ss_dssp -EEEECSGGGGGGCCC------SSEEEEECCCEEEEEEEEEEECSSCCEEEEEEE---EEC--------CEEEESCSSCH
T ss_pred CeEEECCHHHHHHHhc------CCEEEEeccCCCeeEEEEEEECCCCCEEEECCe---eeeecccCCeeEEEECCCCCCH
Confidence 9999999998765433 4456899999889999999853 55543221 112 2222223344555665
Q ss_pred ----HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccch
Q psy10366 158 ----HYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQ 205 (340)
Q Consensus 158 ----e~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~ 205 (340)
+.++++.+++++++--++++||++.+++|+++|+|||.. |+..++.
T Consensus 219 ~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~~g~~~viEiN~R--~~~~~~~ 268 (380)
T 3ax6_A 219 KYSKIAREIATSVVEALEGVGIFGIEMFLTKQGEILVNEIAPR--PHNSGHY 268 (380)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTSCEEEEEEESS--CCGGGTH
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCcEEEEEecCC--CCCCcee
Confidence 678888899999843379999999999999999999977 8776655
No 29
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.79 E-value=1.2e-18 Score=173.13 Aligned_cols=203 Identities=17% Similarity=0.184 Sum_probs=145.9
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCccccccc-CCCc-------cc-ccEEEecCCCC
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYY-PNFK-------EM-YPVVFKIGHAH 80 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~-~~~~-------~~-~PvVvKp~~Gs 80 (340)
.+...|+..|+|++ ++.+++.+|.|| ..+.++++++| ||+ |.++. .+.. ++ ||+||||..|+
T Consensus 82 ~~~~~l~~~Gi~~~Gp~~~a~~~~~dK----~~~k~~l~~~G---Ipt-p~~~~~~~~~ea~~~~~~~g~PvVvKp~~~~ 153 (431)
T 3mjf_A 82 GVVDAFRAAGLAIFGPTQAAAQLEGSK----AFTKDFLARHN---IPS-AEYQNFTDVEAALAYVRQKGAPIVIKADGLA 153 (431)
T ss_dssp THHHHHHHTTCCEESCCHHHHHHHHCH----HHHHHHHHHTT---CSB-CCEEEESCHHHHHHHHHHHCSSEEEEESSSC
T ss_pred HHHHHHHhcCCCeeCCCHHHHHHhhCH----HHHHHHHHHcC---CCC-CCeEeeCCHHHHHHHHHHcCCeEEEEECCCC
Confidence 47788999999999 999999999999 44445689999 684 44432 2222 22 89999999999
Q ss_pred cccceEEecChhhHHHHHHHHHh---h---CceEEeecCCCCCCcEEEEEE--CCeEEEE--EE---EecCCCcccccCC
Q psy10366 81 SGFGKVRVESNQDFQDMAGVVAV---A---NTYCTTEPYIDSKFDVHVQKI--GSNYKAF--QR---KSISGNWKTNTGS 147 (340)
Q Consensus 81 ~G~Gv~lv~~~~~l~~i~~~l~~---~---~~~~~vQefI~~g~DIRv~VI--G~~v~A~--~R---~s~~~~WktNvgg 147 (340)
+|+|+.+++|.+++......+.. . ...+++||||+ |+++.|.++ |+++..+ .+ +...++..-|+++
T Consensus 154 gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~-G~E~sv~~~~dg~~~~~~~~~~~~~~~~~~~~g~~~gg 232 (431)
T 3mjf_A 154 AGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD-GEEASFIVMVDGENVLPMATSQDHKRVGDGDTGPNTGG 232 (431)
T ss_dssp TTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC-SEEEEEEEEEESSCEEECCCBEECCEEETTTEEEECSC
T ss_pred CCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeC-CcEEEEEEEEcCCEEEEEEeeEeceecccCCCCCCCCC
Confidence 99999999999998887765431 1 24567899999 789998888 4456542 12 1225666778864
Q ss_pred -ceeeecC-CChHHHHHHHH--------HHHHhCCCcEEE---EeEEEcCCCCeEEEeecCCcccccccch---hHHHHH
Q psy10366 148 -AMLEQIP-MTDHYKLWIDE--------VAELFGGLDICA---LEIIVGKDGKEHIIEVNDSALSLMGETQ---EEDRRF 211 (340)
Q Consensus 148 -a~~e~~~-~~ee~~~~a~~--------aa~a~~GldiaG---VDll~~~dG~~~VlEVN~s~~P~~~g~~---~~~~~~ 211 (340)
+...|.+ ++++..+.+.+ +.++. |++|.| +|++.+++|+++|+|+|.. |+....+ ..++.|
T Consensus 233 ~g~~~P~~~l~~~~~~~i~~~i~~~~~~~~~~~-g~~~~G~~~ve~~~~~~g~~~viEiN~R--~G~~~~~~i~~~~g~d 309 (431)
T 3mjf_A 233 MGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAE-GNIYTGFLYAGLMISADGQPKVIEFNCR--FGDPETQPIMLRMRSD 309 (431)
T ss_dssp SEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHT-TCCCEEEEEEEEEECTTSCEEEEEECGG--GSTTTHHHHHHHBCSC
T ss_pred ceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCCcEEEEEEEEEEeCCCCeEEEEEecC--CCCcHHHHHHHHHCCC
Confidence 5555666 77766544443 33444 776655 9999999988999999966 6644444 456778
Q ss_pred HHHHHHHHHHhhcC
Q psy10366 212 IVDLVIQKMQVSVL 225 (340)
Q Consensus 212 IA~~vi~~i~~~~~ 225 (340)
++++++......+.
T Consensus 310 l~~~~~~~~~G~l~ 323 (431)
T 3mjf_A 310 LVELCLAGTQGKLN 323 (431)
T ss_dssp HHHHHHHHHTTCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 88888877765443
No 30
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=99.78 E-value=2.3e-18 Score=168.92 Aligned_cols=201 Identities=15% Similarity=0.190 Sum_probs=140.7
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCcc-------c-ccEEEecCCCCc
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKE-------M-YPVVFKIGHAHS 81 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~-------~-~PvVvKp~~Gs~ 81 (340)
.++..|+..|+|++ |+++++.+|.|| ..+.++++++| +|+++...+....+ + ||+||||..|++
T Consensus 76 ~~~~~l~~~gi~~~g~~~~~~~~~~dK----~~~~~~l~~~g---ip~p~~~~~~~~~~~~~~~~~~~~P~vvKp~~~~g 148 (417)
T 2ip4_A 76 GIADAFQARGLLLFGPTQKAAMIEGSK----AFAKGLMERYG---IPTARYRVFREPLEALAYLEEVGVPVVVKDSGLAA 148 (417)
T ss_dssp THHHHHHHHTCCEESCCHHHHHHHHCH----HHHHHHHHHTC---CCBCCEEEESSHHHHHHHHHHHCSSEEEECTTSCS
T ss_pred HHHHHHHHCCCCEECccHHHHHHHcCH----HHHHHHHHHcC---CCCCCeeeeCCHHHHHHHHHHcCCCEEEEECCCCC
Confidence 46677899999998 999999999999 44445589999 68544332222221 2 899999999999
Q ss_pred ccceEEecChhhHHHHHHHHHh--hCceEEeecCCCCCCcEEEEEE-CCe-EEEE--EEE---ecCCCcccccCC-ceee
Q psy10366 82 GFGKVRVESNQDFQDMAGVVAV--ANTYCTTEPYIDSKFDVHVQKI-GSN-YKAF--QRK---SISGNWKTNTGS-AMLE 151 (340)
Q Consensus 82 G~Gv~lv~~~~~l~~i~~~l~~--~~~~~~vQefI~~g~DIRv~VI-G~~-v~A~--~R~---s~~~~WktNvgg-a~~e 151 (340)
|+|+.+++|.+++....+.+.. .+..+++||||+ |++++|.++ +|+ +..+ .|+ ....+|..|.++ +...
T Consensus 149 g~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~-g~E~sv~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 227 (417)
T 2ip4_A 149 GKGVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLE-GEEATVLALTDGETILPLLPSQDHKRLLDGDQGPMTGGMGAVA 227 (417)
T ss_dssp STTCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCC-SCEEEEEEEESSSCEEECCCBEECCEEETTTEEEECSCSEEEE
T ss_pred CCCEEEeCCHHHHHHHHHHHHhhccCCeEEEEECcc-CcEEEEEEEEeCCEEEEcchheechhhccCCCCCcCCCCeeee
Confidence 9999999999998887765531 124567899999 889999988 444 4432 232 123456667753 4555
Q ss_pred ecCCChHHHH-----HHHHHHHHh--CCC---cEEEEeEEEcCCCCeEEEeecCCcccccccchh---HHHHHHHHHHHH
Q psy10366 152 QIPMTDHYKL-----WIDEVAELF--GGL---DICALEIIVGKDGKEHIIEVNDSALSLMGETQE---EDRRFIVDLVIQ 218 (340)
Q Consensus 152 ~~~~~ee~~~-----~a~~aa~a~--~Gl---diaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~---~~~~~IA~~vi~ 218 (340)
+.+++++..+ ++.++.+++ .|+ ++++||++.+++| ++|+|||.. |+-.+++. .++.++.+.++.
T Consensus 228 p~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~~viEiN~R--~g~~~~~~i~~~~g~d~~~~~~~ 304 (417)
T 2ip4_A 228 PYPMDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGLMLTREG-PKVLEFNAR--FGDPEAQALLPLLENDLVELALR 304 (417)
T ss_dssp SCCCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEECSSC-EEEEEEESS--CCTTHHHHHTTTBCSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEEeCCC-eEEEEEecC--CCCcHHHHHHHHhCCCHHHHHHH
Confidence 6667776533 244445543 133 5677999999998 999999976 66444332 357788888777
Q ss_pred HHHh
Q psy10366 219 KMQV 222 (340)
Q Consensus 219 ~i~~ 222 (340)
...-
T Consensus 305 ~~~g 308 (417)
T 2ip4_A 305 VAEG 308 (417)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 5543
No 31
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.78 E-value=3.4e-18 Score=169.30 Aligned_cols=201 Identities=15% Similarity=0.131 Sum_probs=140.3
Q ss_pred HHHHHHHhCCCcccC-ChhHHHHcCCchHHHHHHHHHHHHcCCCCCCccccc--ccCCCcc-------c-ccEEEecCCC
Q psy10366 11 NLLLGFNIGGIPSIN-TLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDIT--YYPNFKE-------M-YPVVFKIGHA 79 (340)
Q Consensus 11 ~vl~~le~~GvpviN-s~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t--~~~~~~~-------~-~PvVvKp~~G 79 (340)
.+...|+..|+|+++ +++++.+|.|| ..+.++++++| +|++|.+ .+.+..+ + ||+||||..|
T Consensus 89 ~~~~~~~~~gi~~~g~~~~~~~~~~dK----~~~k~~l~~~g---ip~p~~~~~~~~~~~~~~~~~~~~g~PvvvKp~~g 161 (451)
T 2vpq_A 89 DFAELCEACQLKFIGPSYQSIQKMGIK----DVAKAEMIKAN---VPVVPGSDGLMKDVSEAKKIAKKIGYPVIIKATAG 161 (451)
T ss_dssp HHHHHHHTTTCEESSSCHHHHHHHHSH----HHHHHHHHHTT---CCBCSBCSSCBSCHHHHHHHHHHHCSSEEEEETTC
T ss_pred HHHHHHHHcCCeEECCCHHHHHHhcCH----HHHHHHHHHcC---CCcCCCcccCcCCHHHHHHHHHhcCCcEEEEECCC
Confidence 467889999999765 79999999999 44445689999 6865544 2322222 2 8999999999
Q ss_pred CcccceEEecChhhHHHHHHHHHh------hCceEEeecCCCCCCcEEEEEEC---CeEEEEEEEecCCCcccccCCcee
Q psy10366 80 HSGFGKVRVESNQDFQDMAGVVAV------ANTYCTTEPYIDSKFDVHVQKIG---SNYKAFQRKSISGNWKTNTGSAML 150 (340)
Q Consensus 80 s~G~Gv~lv~~~~~l~~i~~~l~~------~~~~~~vQefI~~g~DIRv~VIG---~~v~A~~R~s~~~~WktNvgga~~ 150 (340)
++|+|+.+++|.+++....+.+.. ....+++||||+..++++|.+++ |+++.+..+. ..-|+.+-.....
T Consensus 162 ~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~~~~-~~~~~~~~~~~~~ 240 (451)
T 2vpq_A 162 GGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSYGNVIHLGERD-CTIQRRMQKLVEE 240 (451)
T ss_dssp CTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSEEEEEEEEEECTTSCEEEEEEEE-EEEEETTEEEEEE
T ss_pred CCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCeEEEEEEEEcCCCCEEEEeccc-cchhccccceEEE
Confidence 999999999999998887765422 13456789999977899998885 4565443211 0112221111111
Q ss_pred eecC-CCh----HHHHHHHHHHHHhCCCcEEEEeEEEc-CCCCeEEEeecCCccccccc--chhHHHHHHHHHHHHHHH
Q psy10366 151 EQIP-MTD----HYKLWIDEVAELFGGLDICALEIIVG-KDGKEHIIEVNDSALSLMGE--TQEEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 151 e~~~-~~e----e~~~~a~~aa~a~~GldiaGVDll~~-~dG~~~VlEVN~s~~P~~~g--~~~~~~~~IA~~vi~~i~ 221 (340)
.+.+ +++ ++++++.+++++++--.+++||++.+ ++|+++|+|||.. |+... ++..++.++.+.+++.+.
T Consensus 241 ~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~~g~~~viEiN~R--~~~~~~~~~~~~g~dl~~~~~~~~~ 317 (451)
T 2vpq_A 241 APSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNTR--IQVEHPVTEMVTGIDLVKLQLQVAM 317 (451)
T ss_dssp ESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTTEEEEEEEECS--CCTTHHHHHHHHCCCHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEEeeCC--CCCceehhhHHhCCCHHHHHHHHHC
Confidence 2333 444 46788888888885445788999999 8898999999976 54433 345668888888877554
No 32
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.77 E-value=6.4e-18 Score=167.35 Aligned_cols=200 Identities=18% Similarity=0.217 Sum_probs=139.0
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCccccc--ccCCCcc-------c-ccEEEecCCC
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDIT--YYPNFKE-------M-YPVVFKIGHA 79 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t--~~~~~~~-------~-~PvVvKp~~G 79 (340)
.+...|+..|+|++ |+++++.+|.|| ..+.++++++| +|+++.. .+.+..+ + ||+||||..|
T Consensus 89 ~~~~~~~~~gi~~~g~~~~~~~~~~dK----~~~k~~l~~~g---ip~p~~~~~~~~~~~~~~~~~~~~g~PvvvKp~~g 161 (451)
T 1ulz_A 89 EFAKMCEEAGITFIGPHWKVIELMGDK----ARSKEVMKKAG---VPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAG 161 (451)
T ss_dssp HHHHHHHHTTCEESSSCHHHHHHHHSH----HHHHHHHHHTT---CCBCCBCSSSCCCHHHHHHHHHHHCSSEEEEECSS
T ss_pred HHHHHHHHCCCeEECcCHHHHHHhcCH----HHHHHHHHHcC---CCCCCCcccccCCHHHHHHHHHHcCCCEEEEECCC
Confidence 46778999999976 889999999999 44445689999 6854433 2222221 2 8999999999
Q ss_pred CcccceEEecChhhHHHHHHHHHh------hCceEEeecCCCCCCcEEEEEEC---CeEEEEE-EEecCCCcccccCCce
Q psy10366 80 HSGFGKVRVESNQDFQDMAGVVAV------ANTYCTTEPYIDSKFDVHVQKIG---SNYKAFQ-RKSISGNWKTNTGSAM 149 (340)
Q Consensus 80 s~G~Gv~lv~~~~~l~~i~~~l~~------~~~~~~vQefI~~g~DIRv~VIG---~~v~A~~-R~s~~~~WktNvgga~ 149 (340)
++|+|+.+++|.+++....+.+.. ....+++||||+.+++++|.+++ |+++.+. |.. .-|+.+.....
T Consensus 162 ~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~~~~~--~~~~~~~~~~~ 239 (451)
T 1ulz_A 162 GGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDC--SIQRRNQKLVE 239 (451)
T ss_dssp SSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSCEEEEEEEEECTTSCEEEEEEEEE--EEEETTEEEEE
T ss_pred CCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCCeEEEEEEEEcCCCCEEEEeeeec--cccccccccee
Confidence 999999999999998877665432 13456789999977899999985 4565433 321 11222221111
Q ss_pred eeecC-CC----hHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCccccccc--chhHHHHHHHHHHHHHHH
Q psy10366 150 LEQIP-MT----DHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGE--TQEEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 150 ~e~~~-~~----ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g--~~~~~~~~IA~~vi~~i~ 221 (340)
..+.+ ++ +++++++.+++++++--++++||++.+++|+++|+|||.. ++... ++..++.++.+.+++...
T Consensus 240 ~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~g~~~viEiN~R--~~~~~~~~~~~~g~dl~~~~~~~~~ 316 (451)
T 1ulz_A 240 IAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMNTR--IQVEHPVSEMVTGIDIVKWQIKIAA 316 (451)
T ss_dssp EESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEECS--CCTTHHHHHHHHCCCHHHHHHHHHT
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeCCCCEEEEEeeCC--CCccchHHHHHhCCCHHHHHHHHHc
Confidence 11222 44 3567788888888843347889999999999999999976 54332 344567788887776553
No 33
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.77 E-value=1.1e-17 Score=166.35 Aligned_cols=199 Identities=17% Similarity=0.158 Sum_probs=139.1
Q ss_pred HHHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCccccc--ccCCCcc-------c-ccEEEecCC
Q psy10366 10 KNLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDIT--YYPNFKE-------M-YPVVFKIGH 78 (340)
Q Consensus 10 r~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t--~~~~~~~-------~-~PvVvKp~~ 78 (340)
..+...|+..|+|++ |+++++.+|.|| ..+.++++++| +|+++.. .+.+..+ + ||+||||..
T Consensus 94 ~~~~~~~~~~gi~~~g~~~~~~~~~~dK----~~~k~~l~~~G---ip~p~~~~~~~~~~~~~~~~~~~~g~PvvvKp~~ 166 (461)
T 2dzd_A 94 IQFAKRCREEGIIFIGPNENHLDMFGDK----VKARHAAVNAG---IPVIPGSDGPVDGLEDVVAFAEAHGYPIIIKAAL 166 (461)
T ss_dssp HHHHHHHHHTTCEESSCCHHHHHHTTSH----HHHHHHHHHTT---CCBCCBCSSCCSSHHHHHHHHHHHCSCEEEEEST
T ss_pred HHHHHHHHHcCCEEECCCHHHHHHhhCH----HHHHHHHHHcC---CCCCCCcccCcCCHHHHHHHHHhcCCcEEEEeCC
Confidence 367788999999975 889999999999 44455689999 6854443 1222221 2 899999999
Q ss_pred CCcccceEEecChhhHHHHHHHHHh------hCceEEeecCCCCCCcEEEEEEC---CeEEE-EEEEecCCCcccccCCc
Q psy10366 79 AHSGFGKVRVESNQDFQDMAGVVAV------ANTYCTTEPYIDSKFDVHVQKIG---SNYKA-FQRKSISGNWKTNTGSA 148 (340)
Q Consensus 79 Gs~G~Gv~lv~~~~~l~~i~~~l~~------~~~~~~vQefI~~g~DIRv~VIG---~~v~A-~~R~s~~~~WktNvgga 148 (340)
|++|+|+.+++|.+++......... ....+++||||+.+++++|.+++ |++++ +.|. ...|+.|....
T Consensus 167 g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~~~~--~~~~~~~~~~~ 244 (461)
T 2dzd_A 167 GGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYEGNIVHLYERD--CSVQRRHQKVV 244 (461)
T ss_dssp TCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSCEEEEEEEEECTTCCEEEEEEEE--EEEEETTEEEE
T ss_pred CCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCCCeEEEEEEEEcCCCCEEEEEecc--ccccccccceE
Confidence 9999999999999998877665422 13456789999977899999885 34654 4342 12344442111
Q ss_pred eeeec-CCC----hHHHHHHHHHHHHhCCCcE-EEEeEEEcCCCCeEEEeecCCccccccc--chhHHHHHHHHHHHHHH
Q psy10366 149 MLEQI-PMT----DHYKLWIDEVAELFGGLDI-CALEIIVGKDGKEHIIEVNDSALSLMGE--TQEEDRRFIVDLVIQKM 220 (340)
Q Consensus 149 ~~e~~-~~~----ee~~~~a~~aa~a~~Gldi-aGVDll~~~dG~~~VlEVN~s~~P~~~g--~~~~~~~~IA~~vi~~i 220 (340)
...+. .++ +++++++.++++++ |+.. +.||++.++ |+++|+|||.. ++... ++..++.++++.+++..
T Consensus 245 ~~~P~~~l~~~~~~~i~~~a~~~~~~l-g~~g~~~ve~~~~~-~~~~viEiN~R--~~~~~~~~~~~~g~dl~~~~~~~~ 320 (461)
T 2dzd_A 245 EVAPSVSLSDELRQRICEAAVQLMRSV-GYVNAGTVEFLVSG-DEFYFIEVNPR--IQVEHTITEMITGIDIVQSQILIA 320 (461)
T ss_dssp EEESCTTSCHHHHHHHHHHHHHHHHHT-TCCEEEEEEEEEET-TEEEEEEEESS--CCGGGHHHHHHHCCCHHHHHHHHH
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHHc-CCCcceEEEEEEeC-CCEEEEEEECC--CCCceeeEEeecCCCHHHHHHHHH
Confidence 11122 344 45678888899988 6655 559999987 67999999976 55433 34456788888776654
Q ss_pred H
Q psy10366 221 Q 221 (340)
Q Consensus 221 ~ 221 (340)
.
T Consensus 321 ~ 321 (461)
T 2dzd_A 321 D 321 (461)
T ss_dssp T
T ss_pred c
Confidence 3
No 34
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=99.76 E-value=1e-17 Score=166.03 Aligned_cols=201 Identities=18% Similarity=0.191 Sum_probs=139.9
Q ss_pred HHHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCccccc--ccCCCcc-------c-ccEEEecCC
Q psy10366 10 KNLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDIT--YYPNFKE-------M-YPVVFKIGH 78 (340)
Q Consensus 10 r~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t--~~~~~~~-------~-~PvVvKp~~ 78 (340)
-.++..++..|++++ |+++++..|.|| ..+.++++++| +|+++.. ...+..+ + ||+||||..
T Consensus 93 ~~~~~~~~~~g~~~~g~~~~~~~~~~dK----~~~~~~l~~~G---ip~p~~~~~~~~~~~e~~~~~~~~g~PvvvKp~~ 165 (446)
T 3ouz_A 93 QNFVEICAKHNIKFIGPSVEAMNLMSDK----SKAKQVMQRAG---VPVIPGSDGALAGAEAAKKLAKEIGYPVILKAAA 165 (446)
T ss_dssp HHHHHHHHHTTCEESSCCHHHHHHHHSH----HHHHHHHHHTT---CCBCSBCSSSCCSHHHHHHHHHHHCSSEEEEETT
T ss_pred HHHHHHHHHCCCceECcCHHHHHHhCCH----HHHHHHHHHcC---CCcCCCcccCCCCHHHHHHHHHHhCCCEEEEECC
Confidence 457888999999998 899999999999 45555689999 6854443 2222222 2 899999999
Q ss_pred CCcccceEEecChhhHHHHHHHHHhh------CceEEeecCCCCCCcEEEEEECC---eEEEEE-EEecCCCcccccCCc
Q psy10366 79 AHSGFGKVRVESNQDFQDMAGVVAVA------NTYCTTEPYIDSKFDVHVQKIGS---NYKAFQ-RKSISGNWKTNTGSA 148 (340)
Q Consensus 79 Gs~G~Gv~lv~~~~~l~~i~~~l~~~------~~~~~vQefI~~g~DIRv~VIG~---~v~A~~-R~s~~~~WktNvgga 148 (340)
|++|+|+.+++|.+++.......... ...+++|+||+..+++.|.++++ +++.+. |.. .-.+.+....
T Consensus 166 g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~--~~~~~~~~~~ 243 (446)
T 3ouz_A 166 GGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDSFGNVIHVGERDC--SMQRRHQKLI 243 (446)
T ss_dssp CCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEEECTTSCEEEEEEEEE--EEEETTEEEE
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEeecee--eeeecCceEE
Confidence 99999999999999988877654321 44567899999878999999954 454432 321 0011111101
Q ss_pred eeeec-CCC----hHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccc--cchhHHHHHHHHHHHHHHH
Q psy10366 149 MLEQI-PMT----DHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMG--ETQEEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 149 ~~e~~-~~~----ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~--g~~~~~~~~IA~~vi~~i~ 221 (340)
...+. .++ +++.+++.+++++++--++++||++.+++|++|++|||.. ++-+ -.+..++.++.+..++...
T Consensus 244 ~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~ve~~~~~~g~~~~iEiNpR--~~g~~~~~~~~~G~dl~~~~~~~~~ 321 (446)
T 3ouz_A 244 EESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDKNLDFYFIEMNTR--LQVEHCVSEMVSGIDIIEQMIKVAE 321 (446)
T ss_dssp EEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESS--CCTTHHHHHHHHCCCHHHHHHHHHT
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEeCCCCEEEEEeECC--CCCcceeeeeeeCCCHHHHHHHHHC
Confidence 11122 233 4556788888888843366889999999889999999976 4322 2344667888887776553
No 35
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.76 E-value=4.7e-18 Score=166.77 Aligned_cols=200 Identities=16% Similarity=0.243 Sum_probs=136.8
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCcc-------c-ccEEEecCCCCc
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKE-------M-YPVVFKIGHAHS 81 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~-------~-~PvVvKp~~Gs~ 81 (340)
.++..|+..|+|++ |+++++.+|.|| ..+.++++++| +|+++...+.+..+ + ||+||||..|++
T Consensus 77 ~~~~~l~~~gi~~~g~~~~~~~~~~dK----~~~k~~l~~~g---ip~p~~~~~~~~~~~~~~~~~~~~P~vvKp~~~~~ 149 (422)
T 2xcl_A 77 GLVDEFEKAGLHVFGPSKAAAIIEGSK----QFAKDLMKKYD---IPTAEYETFTSFDEAKAYVQEKGAPIVIKADGLAA 149 (422)
T ss_dssp THHHHHHHTTCCEESCCTTTTHHHHCH----HHHHHHHHHTT---CCBCCEEEESCHHHHHHHHHHHCSSEEEEESSCGG
T ss_pred HHHHHHHHCCCCEECcCHHHHHHhcCH----HHHHHHHHHcC---CCCCCeEEECCHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 46677999999999 999999999999 44445689999 68544332322222 2 899999999999
Q ss_pred ccceEEecChhhHHHHHHHHHhh------CceEEeecCCCCCCcEEEEEE--CCeEEEE--EEE---ecCCCcccccCC-
Q psy10366 82 GFGKVRVESNQDFQDMAGVVAVA------NTYCTTEPYIDSKFDVHVQKI--GSNYKAF--QRK---SISGNWKTNTGS- 147 (340)
Q Consensus 82 G~Gv~lv~~~~~l~~i~~~l~~~------~~~~~vQefI~~g~DIRv~VI--G~~v~A~--~R~---s~~~~WktNvgg- 147 (340)
|+|+.+++|.+++....+.+... ...+++||||+ |++++|.++ |+.+..+ .|+ ...+++..|.++
T Consensus 150 g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~-g~E~sv~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~g~~ 228 (422)
T 2xcl_A 150 GKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS-GEEFSLMAFVKGEKVYPMVIAQDHKRAFDGDKGPNTGGM 228 (422)
T ss_dssp GTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC-SEEEEEEEEEETTEEEECCCBEEEEEEEGGGEEEEEEEE
T ss_pred CCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc-CcEEEEEEEEcCCEEEecceeeeeehhcCCCCCCCCCCC
Confidence 99999999999988877654321 24567899999 889999887 3334332 221 112333445543
Q ss_pred ceeeecC-CChHHHH-----HHHHHHHHh--CCCc---EEEEeEEEcCCCCeEEEeecCCcccccccch---hHHHHHHH
Q psy10366 148 AMLEQIP-MTDHYKL-----WIDEVAELF--GGLD---ICALEIIVGKDGKEHIIEVNDSALSLMGETQ---EEDRRFIV 213 (340)
Q Consensus 148 a~~e~~~-~~ee~~~-----~a~~aa~a~--~Gld---iaGVDll~~~dG~~~VlEVN~s~~P~~~g~~---~~~~~~IA 213 (340)
+...+.+ ++++..+ ++.++.+++ .|++ +++||++.+++| ++|+|+|.. |+-.+++ ..++.++.
T Consensus 229 ~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~vd~~~~~~g-~~viEiN~R--~g~~~~~~i~~~~g~d~~ 305 (422)
T 2xcl_A 229 GAYSPVPQISEETVRHAVETIVKPAAKAMVQEGRSFTGVLYAGLMLTENG-SKVIEFNAR--FGDPETQVVLPRMESDLV 305 (422)
T ss_dssp EEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTE-EEEEEEESS--CCTTTHHHHGGGBCSCHH
T ss_pred eeEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEEeCCC-cEEEEEecC--CCCcHHHHHHHhcCCCHH
Confidence 3444555 6766543 444555554 2555 466799999998 999999977 7655533 34577888
Q ss_pred HHHHHHHH
Q psy10366 214 DLVIQKMQ 221 (340)
Q Consensus 214 ~~vi~~i~ 221 (340)
+.++....
T Consensus 306 ~~~~~~~~ 313 (422)
T 2xcl_A 306 QVLLDLLD 313 (422)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 87776543
No 36
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=99.76 E-value=1.1e-17 Score=162.78 Aligned_cols=200 Identities=12% Similarity=0.101 Sum_probs=135.7
Q ss_pred hHHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc-ccEEEecCCCC
Q psy10366 9 HKNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM-YPVVFKIGHAH 80 (340)
Q Consensus 9 ~r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~PvVvKp~~Gs 80 (340)
...+.+.++..|+| .|+++++.+|.|| ..+.++++++| +|+++.....+.. ++ ||+||||..|+
T Consensus 84 ~~~~a~~~~~~gl~-g~~~~~~~~~~dK----~~~~~~l~~~g---ip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~g~ 155 (403)
T 4dim_A 84 IVSLARICDKENLV-GLNEEAAIMCGDK----YKMKEAFKKYN---VNTARHFVVRNENELKNALENLKLPVIVKATDLQ 155 (403)
T ss_dssp HHHHHHHHHHHTCS-SCCHHHHHHHHCH----HHHHHHHHHHT---CCCCCEECCCSHHHHHHHHHTSCSSEEEECSCC-
T ss_pred HHHHHHHHHHcCcC-CCCHHHHHHHhCH----HHHHHHHHHcC---CCCCCEEEeCCHHHHHHHHhcCCCCEEEEECCCC
Confidence 34566778899996 7999999999999 44445688999 6854433332222 23 89999999999
Q ss_pred cccceEEecChhhHHHHHHHHHhh--CceEEeecCCC-CCCcEEEEEECCeEEEEEEEecCCCcccc--cCCceeeecCC
Q psy10366 81 SGFGKVRVESNQDFQDMAGVVAVA--NTYCTTEPYID-SKFDVHVQKIGSNYKAFQRKSISGNWKTN--TGSAMLEQIPM 155 (340)
Q Consensus 81 ~G~Gv~lv~~~~~l~~i~~~l~~~--~~~~~vQefI~-~g~DIRv~VIG~~v~A~~R~s~~~~WktN--vgga~~e~~~~ 155 (340)
+|+|+.+++|.+++.......... ...+++||||+ ..+++.+++.+|++..+.... .-.+..+ ...+...+..+
T Consensus 156 gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g~e~sv~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~p~~l 234 (403)
T 4dim_A 156 GSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIEGYEFGAQAFVYKNDVLFVMPHG-DETYMSHTAVPVGHYVPLDV 234 (403)
T ss_dssp ----CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCCSEEEEEEEEEETTEEEEEEEEE-EEEEESSSEEEEEEEESCCS
T ss_pred CCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccCCcEEEEEEEEECCEEEEEEEec-ceeccCCCCcceeEEeCCCC
Confidence 999999999999988877765432 34567899999 477889998899975432210 0011111 11233445556
Q ss_pred ChHH----HHHHHHHHHHhCCCc--EEEEeEEEcCCCCeEEEeecCCcccccccc----hhHHHHHHHHHHHHHHH
Q psy10366 156 TDHY----KLWIDEVAELFGGLD--ICALEIIVGKDGKEHIIEVNDSALSLMGET----QEEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 156 ~ee~----~~~a~~aa~a~~Gld--iaGVDll~~~dG~~~VlEVN~s~~P~~~g~----~~~~~~~IA~~vi~~i~ 221 (340)
+++. .+++.++++++ |+. +++||++.+ +|++|++|||.. ++-.++ +..++.++.+..++...
T Consensus 235 ~~~~~~~l~~~a~~~~~~l-g~~gg~~~ve~~~~-~~~~~~iEiN~R--~~~~~~~~~~~~~~G~d~~~~~~~~~~ 306 (403)
T 4dim_A 235 KDDIIEKTKTEVKKAIKAL-GLNNCAVNVDMILK-DNEVYIIELTGR--VGANCLPELVEINYGIEYYKMIASMAI 306 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHH-TCCSEEEEEEEEEE-TTEEEEEEEESS--CCSTTHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHc-CCCCCcEEEEEEEE-CCcEEEEEEcCC--CCCCcHHHHHHHHhCcCHHHHHHHHHc
Confidence 5544 67888889998 554 689999998 677999999976 665442 45677788887776553
No 37
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=99.76 E-value=5.3e-18 Score=164.12 Aligned_cols=194 Identities=13% Similarity=0.182 Sum_probs=132.7
Q ss_pred HHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHH-HHcCCCCCCcccccccCCCcc-------c-ccEEEecCCCC
Q psy10366 10 KNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQ-RKLGKENFPLIDITYYPNFKE-------M-YPVVFKIGHAH 80 (340)
Q Consensus 10 r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll-~~~G~~~~P~~~~t~~~~~~~-------~-~PvVvKp~~Gs 80 (340)
-.++..|+..|+++.|+++++.+|.|| ..+.+++ +++| +|+++...+....+ + ||+||||..|+
T Consensus 87 ~~~~~~l~~~gi~~~~~~~~~~~~~dK----~~~~~~l~~~~g---ip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~g~ 159 (391)
T 1kjq_A 87 TDMLIQLEEEGLNVVPCARATKLTMNR----EGIRRLAAEELQ---LPTSTYRFADSESLFREAVADIGYPCIVKPVMSS 159 (391)
T ss_dssp HHHHHHHHHTTCEESSCHHHHHHHHSH----HHHHHHHHTTSC---CCBCCEEEESSHHHHHHHHHHHCSSEEEEESCC-
T ss_pred HHHHHHHHhCCCCcCCCHHHHHHhhCH----HHHHHHHHHhCC---CCCCCeeeeCCHHHHHHHHHhcCCCEEEEeCCCC
Confidence 346777999999999999999999999 3444456 7899 68544333322221 2 89999999999
Q ss_pred cccceEEecChhhHHHHHHHHHhh----CceEEeecCCCCCCcEEEEEECC--eEEE---EEEEecCCCcccccCCceee
Q psy10366 81 SGFGKVRVESNQDFQDMAGVVAVA----NTYCTTEPYIDSKFDVHVQKIGS--NYKA---FQRKSISGNWKTNTGSAMLE 151 (340)
Q Consensus 81 ~G~Gv~lv~~~~~l~~i~~~l~~~----~~~~~vQefI~~g~DIRv~VIG~--~v~A---~~R~s~~~~WktNvgga~~e 151 (340)
+|+|+.+++|.+++....+.+... ...+++||||+.|++++|.++.+ .+.. .......+++. +...
T Consensus 160 gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~sv~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~ 234 (391)
T 1kjq_A 160 SGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFCAPVGHRQEDGDYR-----ESWQ 234 (391)
T ss_dssp --CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCCSEEEEEEEEEETTEEEECCCEEEEEETTEEE-----EEEE
T ss_pred CCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCCCeEEEEEEEEeCCCeEEccCcceEEECCEEE-----EEEe
Confidence 999999999999988877655421 34567899999899999998843 2221 11110112222 2233
Q ss_pred ecCCCh----HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhHH--HHHHHHHHHH
Q psy10366 152 QIPMTD----HYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEED--RRFIVDLVIQ 218 (340)
Q Consensus 152 ~~~~~e----e~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~--~~~IA~~vi~ 218 (340)
+.++++ +.++++.+++++++--++++||++.+++ +++|+|||.. |+..++.... +.++.+..++
T Consensus 235 p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~~-~~~viEiN~R--~~~~~~~~~~~~g~~~~~~~~~ 304 (391)
T 1kjq_A 235 PQQMSPLALERAQEIARKVVLALGGYGLFGVELFVCGD-EVIFSEVSPR--PHDTGMVTLISQDLSEFALHVR 304 (391)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEEETT-EEEEEEEESS--CCGGGGGHHHHBSSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC-cEEEEEEECC--CCCCcceeeeecCcCHHHHHHH
Confidence 455664 5678888899999444899999999987 6899999976 7766554322 4455555544
No 38
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.76 E-value=8e-18 Score=165.18 Aligned_cols=200 Identities=15% Similarity=0.237 Sum_probs=136.7
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCcc-------c-ccEEEecCCCCc
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKE-------M-YPVVFKIGHAHS 81 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~-------~-~PvVvKp~~Gs~ 81 (340)
.++..|+..|+|++ |+++++.+|.|| ..+.++++++| +|+++...+.+..+ + ||+||||..|++
T Consensus 77 ~~~~~l~~~gi~~~g~~~~~~~~~~dK----~~~k~~l~~~g---ip~p~~~~~~~~~~~~~~~~~~~~PvvvKp~~g~g 149 (424)
T 2yw2_A 77 GIVDEFEKRGLKIFGPNKEAAKLEGSK----AFAKTFMKKYG---IPTARYEVFTDFEKAKEYVEKVGAPIVVKADGLAA 149 (424)
T ss_dssp THHHHHHHTTCCEESCCTTTTHHHHCH----HHHHHHHHHTT---CCBCCEEEESCHHHHHHHHHHHCSSEEEEESSCCT
T ss_pred HHHHHHHHCCCcEECcCHHHHHHHhCH----HHHHHHHHHcC---CCCCCeEEECCHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 35677899999998 999999999999 44445689999 68544333322222 2 899999999999
Q ss_pred ccceEEecChhhHHHHHHHHHhh------CceEEeecCCCCCCcEEEEEE--CCeEEE--EEEE---ecCCCcccccCC-
Q psy10366 82 GFGKVRVESNQDFQDMAGVVAVA------NTYCTTEPYIDSKFDVHVQKI--GSNYKA--FQRK---SISGNWKTNTGS- 147 (340)
Q Consensus 82 G~Gv~lv~~~~~l~~i~~~l~~~------~~~~~vQefI~~g~DIRv~VI--G~~v~A--~~R~---s~~~~WktNvgg- 147 (340)
|+|+.+++|.+++....+.+... ...+++||||+ |+++.|.++ |+.+.. ..|+ ...+++.-|.++
T Consensus 150 g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~-g~E~sv~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~ 228 (424)
T 2yw2_A 150 GKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE-GEEASYIVMINGDRYVPLPTSQDHKRLLDEDKGPNTGGM 228 (424)
T ss_dssp TCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC-SEEEEEEEEEETTEEEECCCBEECCEEETTTEEEECSCS
T ss_pred CCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC-CcEEEEEEEEcCCEEEeecceeeccccccCCCCCCCCCC
Confidence 99999999999988877655321 23567899999 777777776 444443 2232 113445556653
Q ss_pred ceeeecC-CChHHH-----HHHHHHHHHh--CCC---cEEEEeEEEcCCCCeEEEeecCCcccccccch---hHHHHHHH
Q psy10366 148 AMLEQIP-MTDHYK-----LWIDEVAELF--GGL---DICALEIIVGKDGKEHIIEVNDSALSLMGETQ---EEDRRFIV 213 (340)
Q Consensus 148 a~~e~~~-~~ee~~-----~~a~~aa~a~--~Gl---diaGVDll~~~dG~~~VlEVN~s~~P~~~g~~---~~~~~~IA 213 (340)
+...+.+ ++++.. +++.++++++ .|+ ++++||++.+++| ++|+|+|.. |+-.+.+ ..++.++.
T Consensus 229 ~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~~viEiN~R--~g~~~~~~i~~~~g~d~~ 305 (424)
T 2yw2_A 229 GAYSPTPVINEEVEKRIREEIVERVIKGLKEEGIYYRGFLYAGLMITKEG-PKVLEFNVR--LGDPEAQPILMRVKNDFL 305 (424)
T ss_dssp EEEESCTTSCHHHHHHHHHHTHHHHHHHHHHHTCCCEEEEEEEEEEETTE-EEEEEEESS--CCTTTHHHHHHTBCSCHH
T ss_pred eeECCCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-cEEEEEecC--CCCcHHHHHHHHhCCCHH
Confidence 4445555 677654 3444445543 134 4566999999998 999999976 6644432 23567787
Q ss_pred HHHHHHHH
Q psy10366 214 DLVIQKMQ 221 (340)
Q Consensus 214 ~~vi~~i~ 221 (340)
+.++....
T Consensus 306 ~~~~~~~~ 313 (424)
T 2yw2_A 306 ETLLNFYE 313 (424)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 77776443
No 39
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=99.75 E-value=2.5e-18 Score=169.46 Aligned_cols=183 Identities=15% Similarity=0.190 Sum_probs=130.6
Q ss_pred HHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccC--CCcc-------c-ccEEEecCCC
Q psy10366 10 KNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYP--NFKE-------M-YPVVFKIGHA 79 (340)
Q Consensus 10 r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~--~~~~-------~-~PvVvKp~~G 79 (340)
..++..|+. |+|+.++++++.+|.|| ..+.++++++| +|+++..... +..+ + ||+||||..|
T Consensus 99 ~~~l~~l~~-g~~v~p~~~a~~~~~dK----~~~k~~l~~~G---ip~p~~~~~~~~~~~~~~~~~~~~g~P~VvKp~~g 170 (403)
T 3k5i_A 99 TYALEEVAS-EVKIEPSWQAIRTIQNK----FNQKEHLRKYG---IPMAEHRELVENTPAELAKVGEQLGYPLMLKSKTM 170 (403)
T ss_dssp HHHHHHHTT-TSEESSCHHHHHHHTSH----HHHHHHHHTTT---CCBCCEEEESSCCHHHHHHHHHHHCSSEEEEESSS
T ss_pred HHHHHHHHc-CCccCcCHHHHHHhcCH----HHHHHHHHHCC---cCCCCEEEEcCCCHHHHHHHHHHhCCCEEEEeCCC
Confidence 456788998 99999999999999999 44445689999 6855543333 2222 2 8999999888
Q ss_pred C-cccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECCe--EEEEEEEecCCCcccccCCceeeecC-C
Q psy10366 80 H-SGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGSN--YKAFQRKSISGNWKTNTGSAMLEQIP-M 155 (340)
Q Consensus 80 s-~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~~--v~A~~R~s~~~~WktNvgga~~e~~~-~ 155 (340)
+ +|+|+.++++.+++....+.+. ...+++|+||+.++++.|.++++. +.++-+.. ...+.+.-.....|.+ +
T Consensus 171 g~~g~Gv~~v~~~~el~~a~~~~~--~~~~lvEe~i~~~~E~sv~v~~~~~g~~~~p~~~--~~~~~g~~~~~~~Pa~~l 246 (403)
T 3k5i_A 171 AYDGRGNFRVNSQDDIPEALEALK--DRPLYAEKWAYFKMELAVIVVKTKDEVLSYPTVE--TVQEDSICKLVYAPARNV 246 (403)
T ss_dssp CCTTTTEEEECSTTSHHHHHHHTT--TSCEEEEECCCEEEEEEEEEEECSSCEEECCCEE--EEEETTEEEEEEESCSSC
T ss_pred CcCCCCEEEECCHHHHHHHHHhcC--CCcEEEecCCCCCeEEEEEEEEcCCCEEEeCCee--eEEeCCEEEEEEeCCCCC
Confidence 6 9999999999999888776553 455678999998899999999653 22211100 0001111111223344 5
Q ss_pred Ch----HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchh
Q psy10366 156 TD----HYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQE 206 (340)
Q Consensus 156 ~e----e~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~ 206 (340)
++ +.++++.+++++++.-++++||++.+++|++||+|||.. |+-.|+..
T Consensus 247 ~~~~~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~dg~~~v~EiNpR--~~~sg~~~ 299 (403)
T 3k5i_A 247 SDAINQKAQELARKAVAAFDGKGVFGVEMFLLEDDSIMLCEIASR--IHNSGHYT 299 (403)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCSEEEEEEEEEETTSCEEEEEEESS--CCGGGTTH
T ss_pred CHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCCcEEEEEeecC--CCCCCcee
Confidence 54 446778888888866679999999999999999999977 88766543
No 40
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=99.75 E-value=7.1e-18 Score=167.48 Aligned_cols=200 Identities=14% Similarity=0.196 Sum_probs=136.8
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc-cc-EEEecCCCC
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM-YP-VVFKIGHAH 80 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~P-vVvKp~~Gs 80 (340)
.++..|+..|+|++ |+++++.+|.|| ..+.++++++| +|+++...+.+.. ++ || +||||..|.
T Consensus 103 ~~~~~l~~~gi~~~g~~~~~~~~~~dK----~~~k~~l~~~g---ip~p~~~~~~~~~~~~~~~~~~g~P~vvvKp~~~~ 175 (452)
T 2qk4_A 103 GIVGNLRSAGVQCFGPTAEAAQLESSK----RFAKEFMDRHG---IPTAQWKAFTKPEEACSFILSADFPALVVKASGLA 175 (452)
T ss_dssp THHHHHHHTTCCEESCCTTTTHHHHBH----HHHHHHHHHTT---CCBCCEEEESSHHHHHHHHHHCSSCEEEEEESBC-
T ss_pred HHHHHHHhcCCcEeCcCHHHHHHhcCH----HHHHHHHHHCC---CCCCCeEEECCHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 46678899999999 999999999999 44445689999 6854433332222 23 89 999999999
Q ss_pred cccceEEecChhhHHHHHHHHHhh------CceEEeecCCCCCCcEEEEEE-CCe-EEEE--EE---EecCCCcccccCC
Q psy10366 81 SGFGKVRVESNQDFQDMAGVVAVA------NTYCTTEPYIDSKFDVHVQKI-GSN-YKAF--QR---KSISGNWKTNTGS 147 (340)
Q Consensus 81 ~G~Gv~lv~~~~~l~~i~~~l~~~------~~~~~vQefI~~g~DIRv~VI-G~~-v~A~--~R---~s~~~~WktNvgg 147 (340)
+|+|+.+++|.+++....+.+... ...+++||||+ |+++.|.++ +|+ +..+ .| +...+++..|+++
T Consensus 176 gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~-G~E~sv~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~g~ 254 (452)
T 2qk4_A 176 AGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD-GEEVSCLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGG 254 (452)
T ss_dssp --CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCC-SEEEEEEEEECSSCEEECCCBEEEEEEETTTEEEEEEE
T ss_pred CCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC-CCeEEEEEEECCCEEEEcceeeecccccCCCCCCCCCC
Confidence 999999999999988876644221 24567899999 899999988 454 5432 22 1224556667653
Q ss_pred -ceeeecC-CChHHH-----HHHHHHHHHh--CCC---cEEEEeEEEcCCCCeEEEeecCCcccccccch---hHHHHHH
Q psy10366 148 -AMLEQIP-MTDHYK-----LWIDEVAELF--GGL---DICALEIIVGKDGKEHIIEVNDSALSLMGETQ---EEDRRFI 212 (340)
Q Consensus 148 -a~~e~~~-~~ee~~-----~~a~~aa~a~--~Gl---diaGVDll~~~dG~~~VlEVN~s~~P~~~g~~---~~~~~~I 212 (340)
+...|.+ ++++.. +++.++++++ .|+ ++++||++.+++| ++|+|||.. |+-.+.+ ...+.++
T Consensus 255 ~~~~~P~~~l~~~~~~~~~~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~~viEiN~R--~~~~~~~~i~~~~g~d~ 331 (452)
T 2qk4_A 255 MGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTKNG-PKVLEFNCR--FGDPECQVILPLLKSDL 331 (452)
T ss_dssp EEEEESCTTCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEEETTE-EEEEEEESS--CCTTTHHHHGGGBCSCH
T ss_pred ceeeccCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-cEEEEEecc--CCCcHHHHHHHHhCCCH
Confidence 4445555 666543 3555666665 244 5689999999998 999999976 6644432 3346777
Q ss_pred HHHHHHHHH
Q psy10366 213 VDLVIQKMQ 221 (340)
Q Consensus 213 A~~vi~~i~ 221 (340)
.+.++....
T Consensus 332 ~~~~~~~~~ 340 (452)
T 2qk4_A 332 YEVIQSTLD 340 (452)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 777766543
No 41
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=99.75 E-value=1e-17 Score=165.11 Aligned_cols=197 Identities=17% Similarity=0.213 Sum_probs=131.4
Q ss_pred HHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHH-HHcCCCCCCcccccccCCCcc-------c-ccEEEecCCCC
Q psy10366 10 KNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQ-RKLGKENFPLIDITYYPNFKE-------M-YPVVFKIGHAH 80 (340)
Q Consensus 10 r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll-~~~G~~~~P~~~~t~~~~~~~-------~-~PvVvKp~~Gs 80 (340)
-.++..|+..|+++.|+++++.+|.|| ..+.+++ +++| +|+++...+.+..+ + ||+||||..|+
T Consensus 95 ~~~~~~l~~~gi~~~~~~~~~~~~~dK----~~~k~~l~~~~g---ip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~g~ 167 (433)
T 2dwc_A 95 LDALFEFEKDGYFVVPNARATWIAMHR----ERLRETLVKEAK---VPTSRYMYATTLDELYEACEKIGYPCHTKAIMSS 167 (433)
T ss_dssp HHHHHHHHHTTCCBSSCHHHHHHHHCH----HHHHHHHHHTSC---CCCCCEEEESSHHHHHHHHHHHCSSEEEEECCC-
T ss_pred HHHHHHHHhcCCeeCCCHHHHHHhhCH----HHHHHHHHHhcC---CCCCCeeEeCCHHHHHHHHHhcCCCEEEEECCCc
Confidence 356778999999999999999999999 3444456 7899 68544333322221 2 89999999999
Q ss_pred cccceEEecChhhHHHHHHHHHh----hCceEEeecCCCCCCcEEEEEE-----CCeEE-EEEE----EecCCCcccccC
Q psy10366 81 SGFGKVRVESNQDFQDMAGVVAV----ANTYCTTEPYIDSKFDVHVQKI-----GSNYK-AFQR----KSISGNWKTNTG 146 (340)
Q Consensus 81 ~G~Gv~lv~~~~~l~~i~~~l~~----~~~~~~vQefI~~g~DIRv~VI-----G~~v~-A~~R----~s~~~~WktNvg 146 (340)
+|+|+.+++|.+++....+.+.. ....+++||||+.|++++|.++ +|+++ .+.. ....+++..
T Consensus 168 gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~sv~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~--- 244 (433)
T 2dwc_A 168 SGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDFDVEVTELAVRHFDENGEIVTTFPKPVGHYQIDGDYHA--- 244 (433)
T ss_dssp -----EEECSGGGHHHHHHC---------CCEEEEECCCCSEEEEECCEEEECTTSCEEEEEECCEEEEESSSSEEE---
T ss_pred CCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCCCCeeEEEEEEecccCCCCEeEEEecccceEEEcCEEEE---
Confidence 99999999999998887664332 1345678999998999999987 46632 2211 111233322
Q ss_pred CceeeecCCCh----HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhH----HHHHHHHHHHH
Q psy10366 147 SAMLEQIPMTD----HYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEE----DRRFIVDLVIQ 218 (340)
Q Consensus 147 ga~~e~~~~~e----e~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~----~~~~IA~~vi~ 218 (340)
...+.++++ +.++++.+++++++--++++||++.+++ +++|+|||.. |+..++... ++.+..+..+.
T Consensus 245 --~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~-~~~viEiN~R--~~~~~~~~~~~~~~g~~~~~~~~~ 319 (433)
T 2dwc_A 245 --SWQPAEISEKAEREVYRIAKRITDVLGGLGIFGVEMFVKGD-KVWANEVSPR--PHDTGMVTLASHPPGFSEFALHLR 319 (433)
T ss_dssp --EEESCCCCHHHHHHHHHHHHHHHHHHCSSEECEEEEEEETT-EEEEEEEESS--CCGGGGGHHHHSCTTCSHHHHHHH
T ss_pred --EEcCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC-cEEEEEEeCC--cCCCcceehhHhccCCCHHHHHHH
Confidence 233455665 5678888899998544899999999987 6899999976 776655432 25566666655
Q ss_pred HHH
Q psy10366 219 KMQ 221 (340)
Q Consensus 219 ~i~ 221 (340)
.+.
T Consensus 320 ~~~ 322 (433)
T 2dwc_A 320 AVL 322 (433)
T ss_dssp HHH
T ss_pred HHc
Confidence 443
No 42
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.75 E-value=1.6e-17 Score=165.74 Aligned_cols=202 Identities=17% Similarity=0.139 Sum_probs=139.4
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCccccccc-CCCc-------cc-ccEEEecCCCC
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYY-PNFK-------EM-YPVVFKIGHAH 80 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~-~~~~-------~~-~PvVvKp~~Gs 80 (340)
.+...|+..|+|++ |+.+++.+|.|| ..+.++++++| ||+ |.++. .+.. ++ ||+||||..|+
T Consensus 98 ~~~~~l~~~Gi~~~Gp~~~a~~~~~dK----~~~k~~l~~~G---Ip~-p~~~~~~~~~ea~~~~~~~g~PvVvKp~~~~ 169 (442)
T 3lp8_A 98 GLSDALTEEGILVFGPSKAAARLESSK----GFTKELCMRYG---IPT-AKYGYFVDTNSAYKFIDKHKLPLVVKADGLA 169 (442)
T ss_dssp THHHHHHHTTCEEESCCHHHHHHHHCH----HHHHHHHHHHT---CCB-CCEEEESSHHHHHHHHHHSCSSEEEEESSCC
T ss_pred HHHHHHHhcCCcEecCCHHHHHHhhCH----HHHHHHHHHCC---CCC-CCEEEECCHHHHHHHHHHcCCcEEEeECCCC
Confidence 46778999999999 999999999999 44445589999 684 44432 2222 23 89999999999
Q ss_pred cccceEEecChhhHHHHHHHHHhh------CceEEeecCCCCCCcEEEEEE--CCeEEE--EEEE---ecCCCcccccCC
Q psy10366 81 SGFGKVRVESNQDFQDMAGVVAVA------NTYCTTEPYIDSKFDVHVQKI--GSNYKA--FQRK---SISGNWKTNTGS 147 (340)
Q Consensus 81 ~G~Gv~lv~~~~~l~~i~~~l~~~------~~~~~vQefI~~g~DIRv~VI--G~~v~A--~~R~---s~~~~WktNvgg 147 (340)
+|+|+.+++|.+++......+... ...+++||||+ |+++.|.++ |+++.. ..+. ...++..-|+++
T Consensus 170 gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~-G~E~sv~~~~dg~~~~~~~~~~~~~~~~~~~~g~~~gg 248 (442)
T 3lp8_A 170 QGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE-GKEISFFTLVDGSNPVILGVAQDYKTIGDNNKGPNTGG 248 (442)
T ss_dssp TTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC-SEEEEEEEEEESSCEEEEEEEEECCEEEGGGEEEECSC
T ss_pred CCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec-CcEEEEEEEECCCeEEEeEEeEeeeecccCCCCCCCCC
Confidence 999999999999988877654321 24577899999 788888877 445543 2222 113344556763
Q ss_pred -ceeeecC-CChHHHHHHH--------HHHHHhCCCcEEE---EeEEEcCCCCeEEEeecCCcccccccch---hHHHHH
Q psy10366 148 -AMLEQIP-MTDHYKLWID--------EVAELFGGLDICA---LEIIVGKDGKEHIIEVNDSALSLMGETQ---EEDRRF 211 (340)
Q Consensus 148 -a~~e~~~-~~ee~~~~a~--------~aa~a~~GldiaG---VDll~~~dG~~~VlEVN~s~~P~~~g~~---~~~~~~ 211 (340)
+...|.+ ++++..+.+. ++.++. |++|.| +|++.+++| ++|+|+|.. |+-.+++ ...+.+
T Consensus 249 ~g~~~P~~~l~~~~~~~i~~~i~~~a~~~~~a~-g~~~~G~~~ve~~~~~~g-~~viEiN~R--~g~~~~~~~~~~~~~d 324 (442)
T 3lp8_A 249 MGSYSKPNIITQEMEHIIIQKIIYPTIKAMFNM-NIQFRGLLFAGIIIKKNE-PKLLEYNVR--FGDPETQSILPRLNSD 324 (442)
T ss_dssp SEEEECTTSSCHHHHHHHHHHTHHHHHHHHHHT-TCCCEEEEEEEEEEETTE-EEEEEEESS--CCTTHHHHHGGGBCSC
T ss_pred cEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCCceeEEEEEEEEeCCC-eEEEEEecC--CCCCchhhhHHHhCCC
Confidence 5555665 6776544333 334555 776555 999999988 899999976 5522222 233457
Q ss_pred HHHHHHHHHHhhcC
Q psy10366 212 IVDLVIQKMQVSVL 225 (340)
Q Consensus 212 IA~~vi~~i~~~~~ 225 (340)
+.+.+++-....+.
T Consensus 325 l~~~~~~~~~G~l~ 338 (442)
T 3lp8_A 325 FLKLLSLTAKGKLG 338 (442)
T ss_dssp HHHHHHHHHHTCCS
T ss_pred HHHHHHHHHcCCCC
Confidence 77777776665443
No 43
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=99.75 E-value=6.6e-18 Score=162.91 Aligned_cols=194 Identities=11% Similarity=0.055 Sum_probs=130.3
Q ss_pred HHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc-ccEEEecCCCC-
Q psy10366 10 KNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM-YPVVFKIGHAH- 80 (340)
Q Consensus 10 r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~PvVvKp~~Gs- 80 (340)
-.++..|+..| .+.|+++++.+|.|| ..+.++++++| +|+++...+.... ++ ||+||||..|+
T Consensus 72 ~~~~~~l~~~g-~~g~~~~~~~~~~dK----~~~k~~l~~~g---ip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~~~~ 143 (369)
T 3aw8_A 72 VEAARRLEGRL-PLYPPAKALEVAQDR----LREKTFFQGLG---VPTPPFHPVDGPEDLEEGLKRVGLPALLKTRRGGY 143 (369)
T ss_dssp HHHHHHHHHHS-CBSSCHHHHHHHTCH----HHHHHHHHHHT---CCCCCEEEESSHHHHHHHHTTTCSSEEEEECCC--
T ss_pred HHHHHHHHHcC-CcCCCHHHHHHhcCH----HHHHHHHHHCC---CCCCCceeeCCHHHHHHHHHHcCCCEEEEEcCCCC
Confidence 45677889999 899999999999999 44455689999 6854433222211 23 89999999999
Q ss_pred cccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEEC---CeEEEEEEEecCCCc-ccccCCceeeecC-C
Q psy10366 81 SGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIG---SNYKAFQRKSISGNW-KTNTGSAMLEQIP-M 155 (340)
Q Consensus 81 ~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG---~~v~A~~R~s~~~~W-ktNvgga~~e~~~-~ 155 (340)
+|+|+.+++|.+++....+.+. ...+++||||+.|+++.|.+++ |++..+-+. .++ +.+.......+.+ +
T Consensus 144 ~g~Gv~~v~~~~el~~~~~~~~--~~~~lvEe~i~~g~e~sv~~~~d~~G~~~~~~~~---~~~~~~~~~~~~~~p~~~l 218 (369)
T 3aw8_A 144 DGKGQALVRTEEEALEALKALG--GRGLILEGFVPFDREVSLLAVRGRTGEVAFYPLV---ENRHWGGILRLSLAPAPGA 218 (369)
T ss_dssp ----EEEECSHHHHHHHHTTTC--SSSEEEEECCCCSEEEEEEEEECTTSCEEECCCE---EEEEETTEEEEEEESCTTC
T ss_pred CcceEEEECCHHHHHHHHHhcC--CCcEEEEEcCCCCEEEEEEEEECCCCCEEEECCe---eeeeeCCEEEEEECCCCCC
Confidence 9999999999998887665442 4556789999989999999996 366543221 112 2112212233344 5
Q ss_pred Ch----HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchh--HHHHHHHHHHHHH
Q psy10366 156 TD----HYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQE--EDRRFIVDLVIQK 219 (340)
Q Consensus 156 ~e----e~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~--~~~~~IA~~vi~~ 219 (340)
++ ++++++.+++++++--++++||++.++ |+++|+|+|.. |+..+... .++.+..+.++..
T Consensus 219 ~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~-~~~~viEiN~R--~~~~~~~~~~~~g~~~~~~~~~~ 285 (369)
T 3aw8_A 219 SEALQKKAEAYALRAMEALDYVGVLALEFFQVG-EELLFNEMAPR--VHNSGHWTIEGAETSQFENHLRA 285 (369)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TEEEEEEEESS--CCGGGTTHHHHBSSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEEC-CcEEEEEEeCC--cCCccceeeeeecCCHHHHHHHH
Confidence 54 567888889999843359999999987 77999999976 77666543 2344444444443
No 44
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=99.74 E-value=9.7e-17 Score=157.73 Aligned_cols=192 Identities=18% Similarity=0.258 Sum_probs=127.6
Q ss_pred HHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-----cc-ccEEEecCCCCcccceEEec
Q psy10366 16 FNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-----EM-YPVVFKIGHAHSGFGKVRVE 89 (340)
Q Consensus 16 le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-----~~-~PvVvKp~~Gs~G~Gv~lv~ 89 (340)
-|.+|+| -|+++++.+|+|| ..+.++++++| +|++++..+.+.. ++ ||+||||..|++|+|+.+++
T Consensus 94 ~e~lglp-g~~~~~~~~~~dK----~~~k~~l~~~g---ip~p~~~~~~~~~~~~~~~~g~P~vvKp~~g~gs~Gv~~v~ 165 (425)
T 3vot_A 94 AEALNLP-GLPFTTMENCRNK----NKTRSILQQNG---LNTPVFHEFHTLADLENRKLSYPLVVKPVNGFSSQGVVRVD 165 (425)
T ss_dssp HHHTTCS-SCCHHHHHHHHCH----HHHHHHHHHTT---CCCCCEEEESSGGGGTTCCCCSSEEEEESCC-----CEEEC
T ss_pred HHHcCCC-CCCHHHHHHhhCH----HHHHHHHHHCC---CCCCceeccCcHHHHHHhhcCCcEEEEECCCCCCCCceEec
Confidence 4778998 5899999999999 44455689999 6843332222222 23 99999999999999999999
Q ss_pred ChhhHHHHHHHHHh-----------hCceEEeecCCC-CCCcEEEEEECCeEE--EEEEEec-CCCcccccCCceeeecC
Q psy10366 90 SNQDFQDMAGVVAV-----------ANTYCTTEPYID-SKFDVHVQKIGSNYK--AFQRKSI-SGNWKTNTGSAMLEQIP 154 (340)
Q Consensus 90 ~~~~l~~i~~~l~~-----------~~~~~~vQefI~-~g~DIRv~VIG~~v~--A~~R~s~-~~~WktNvgga~~e~~~ 154 (340)
|.++++...+.+.. .+..+++|+||+ .-+.+.+++.+|++. +..++.. .+.+-. .++...|..
T Consensus 166 ~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~G~e~sv~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~Pa~ 243 (425)
T 3vot_A 166 DRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFIDGPEFAIETLSIQGNVHVLSIGYKGNSKGPFFE--EGVYIAPAQ 243 (425)
T ss_dssp SHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCCSCEEEEEEEEETTEEEEEEEEEEECCCCSBCC--CCEEEESCC
T ss_pred hHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEecCcEEEEEEEEeCCcEEEEeEEEEeccCCCccc--cceEeeccc
Confidence 99998887765432 234577899999 456777788888863 3333321 111111 233344555
Q ss_pred CChH----HHHHHHHHHHHhCCC--cEEEEeEEEcCCCCeEEEeecCCcccccccc-----hhHHHHHHHHHHHHHH
Q psy10366 155 MTDH----YKLWIDEVAELFGGL--DICALEIIVGKDGKEHIIEVNDSALSLMGET-----QEEDRRFIVDLVIQKM 220 (340)
Q Consensus 155 ~~ee----~~~~a~~aa~a~~Gl--diaGVDll~~~dG~~~VlEVN~s~~P~~~g~-----~~~~~~~IA~~vi~~i 220 (340)
++++ +.+++.++.+++ |+ .++.||++.++||++||+|||.. |+-.++ +..++.++.+++++..
T Consensus 244 l~~~~~~~i~~~~~~~~~al-g~~~G~~~ve~~~~~dG~~~~iEiN~R--~gG~~~~~~l~~~~~G~d~~~~~i~~a 317 (425)
T 3vot_A 244 LKEETRLAIVKEVTGAVSAL-GIHQGPAHTELRLDKDGTPYVIEVGAR--IGGSGVSHYIVKESTGINFMQLVLQNA 317 (425)
T ss_dssp CCHHHHHHHHHHHHHHHHHT-TCCSEEEEEEEEECTTCCEEEEEEESS--CGGGGHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHc-CCCcceEEEEEEEEeCCcEEEEEEecC--CCCCCchHHHHHHHHCCCHHHHHHHHH
Confidence 6654 456777788887 76 48999999999999999999976 543332 2345567777766544
No 45
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=99.74 E-value=1.4e-17 Score=160.27 Aligned_cols=176 Identities=14% Similarity=0.116 Sum_probs=103.6
Q ss_pred HHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc-ccEEEecCCCC-c
Q psy10366 11 NLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM-YPVVFKIGHAH-S 81 (340)
Q Consensus 11 ~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~PvVvKp~~Gs-~ 81 (340)
.++..|+. .+.|+++++.+|.|| ..+.++++++| +|+++...+. .. ++ ||+|+||..|+ +
T Consensus 71 ~~~~~l~~---~~g~~~~~~~~~~dK----~~~~~~l~~~g---ip~p~~~~~~-~~~~~~~~~~~~~P~vvKp~~~~~~ 139 (365)
T 2z04_A 71 EVLEKCES---KLIPNPQALYVKKSR----IREKLFLKKHG---FPVPEFLVIK-RDEIIDALKSFKLPVVIKAEKLGYD 139 (365)
T ss_dssp HHHHHHTT---TBSSCTHHHHHHTCH----HHHHHHHHTTT---CCCCCEEEC---------------CEEEECC-----
T ss_pred HHHHHHhh---hcCCCHHHHHHhhCH----HHHHHHHHHcC---CCCCCEEEEc-HHHHHHHHHhcCCCEEEEEcCCCcC
Confidence 36677764 889999999999999 44455689999 6844432222 21 23 89999999999 9
Q ss_pred ccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEEC---CeEEE--EEEEecCCCcccc-cCCceeeecCC
Q psy10366 82 GFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIG---SNYKA--FQRKSISGNWKTN-TGSAMLEQIPM 155 (340)
Q Consensus 82 G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG---~~v~A--~~R~s~~~~WktN-vgga~~e~~~~ 155 (340)
|+|+.+++|.+++....+.+.. +..+++||||+.|++++|.+++ |++.. ..++ |..+ .......+.++
T Consensus 140 g~Gv~~v~~~~el~~~~~~~~~-~~~~lvEe~i~~g~e~sv~~~~d~~G~~~~~~~~~~-----~~~~~~~~~~~~p~~~ 213 (365)
T 2z04_A 140 GKGQYRIKKLEDANQVVKNHDK-EESFIIEEFVKFEAEISCIGVRDREGKTYFYPQPFN-----KHEEGILIYNYVPYAK 213 (365)
T ss_dssp --------------------------CEEEECCCCSEEEEEEEEECTTCCEEECCEEEE-----EEETTEEEEEEEEEEC
T ss_pred CCCeEEECCHHHHHHHHHHhcc-CCCEEEEccCCCCEEEEEEEEECCCCCEEEECCEEE-----EEeCCEeEEEECCHhH
Confidence 9999999999988876654322 3455689999989999999994 46543 2221 2211 11112333344
Q ss_pred ChHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccch
Q psy10366 156 TDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQ 205 (340)
Q Consensus 156 ~ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~ 205 (340)
.++.++++.+++++++--++++||++.+++|+++|+|+|.. |+..++.
T Consensus 214 ~~~~~~~~~~~~~~lg~~G~~~vd~~~~~~g~~~~iEiN~R--~~~~~~~ 261 (365)
T 2z04_A 214 LKEAEEITKRLMELLDIVGVFTVEFFLLKDGRVLINEFAPR--VHNTGHW 261 (365)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEEEEECTTSCEEEEEEESS--CCGGGTT
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEEEeCCCcEEEEEeccC--cCCCceE
Confidence 78999999999999843369999999999998999999976 7776655
No 46
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.74 E-value=2e-17 Score=164.34 Aligned_cols=199 Identities=18% Similarity=0.257 Sum_probs=130.5
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCcc-------c-ccEEEecCCCCc
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKE-------M-YPVVFKIGHAHS 81 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~-------~-~PvVvKp~~Gs~ 81 (340)
.++..|+..|+|++ ++++++.+|.||. .+.++++++| ||+++...+....+ + ||+||||..|++
T Consensus 98 ~~~~~l~~~gi~~~g~~~~~~~~~~dK~----~~k~~l~~~g---ip~p~~~~~~~~~~~~~~~~~~~~PvVvKp~~~~g 170 (451)
T 2yrx_A 98 GIVDRFMAEGLRIFGPSQRAALIEGSKA----FAKELMKKYG---IPTADHAAFTSYEEAKAYIEQKGAPIVIKADGLAA 170 (451)
T ss_dssp THHHHHHHTTCCEESCCHHHHHHHHCHH----HHHHHHHHTT---CCBCCEEEESCHHHHHHHHHHHCSSEEEEECC---
T ss_pred HHHHHHHHCCCCEeCccHHHHHHhhCHH----HHHHHHHHcC---CCCCCeEEECCHHHHHHHHHhcCCcEEEEeCCCCC
Confidence 45677899999998 8999999999994 4445589999 68544322222221 2 899999999999
Q ss_pred ccceEEecChhhHHHHHHHHHhh------CceEEeecCCCCCCcEEEEEE-CCe-EEEE--EEE---ecCCCcccccCC-
Q psy10366 82 GFGKVRVESNQDFQDMAGVVAVA------NTYCTTEPYIDSKFDVHVQKI-GSN-YKAF--QRK---SISGNWKTNTGS- 147 (340)
Q Consensus 82 G~Gv~lv~~~~~l~~i~~~l~~~------~~~~~vQefI~~g~DIRv~VI-G~~-v~A~--~R~---s~~~~WktNvgg- 147 (340)
|+|+.+++|.+++....+.+... ...+++||||+ |+++.|.++ +|+ +..+ .|+ ...++...|.++
T Consensus 171 g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~-G~E~sv~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~g~~ 249 (451)
T 2yrx_A 171 GKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLE-GEEFSFMAFVNGEKVYPLAIAQDHKRAYDGDEGPNTGGM 249 (451)
T ss_dssp -CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCC-SEEEEEEEEEETTEEEECCCBEECCEEETTTEEEECSCS
T ss_pred CCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCc-CcEEEEEEEEcCCEEEEeeeEEeccccccCCCCCCCCCC
Confidence 99999999999988877654321 24567899999 788888887 444 3332 222 112233445543
Q ss_pred ceeeecC-CChHHHH-----HHHHHHHHh--CCCc---EEEEeEEEcCCCCeEEEeecCCcccccccch---hHHHHHHH
Q psy10366 148 AMLEQIP-MTDHYKL-----WIDEVAELF--GGLD---ICALEIIVGKDGKEHIIEVNDSALSLMGETQ---EEDRRFIV 213 (340)
Q Consensus 148 a~~e~~~-~~ee~~~-----~a~~aa~a~--~Gld---iaGVDll~~~dG~~~VlEVN~s~~P~~~g~~---~~~~~~IA 213 (340)
+...+.+ ++++..+ ++.++++++ .|++ +++||++.+++| ++|+|||.. |+..+++ ...+.++.
T Consensus 250 ~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~~viEiN~R--~g~~~~~~i~~~~g~d~~ 326 (451)
T 2yrx_A 250 GAYSPVPQISDEMMDAALEAILRPAAKALAAEGRPFLGVLYAGLMATANG-PKVIEFNAR--FGDPEAQVVLPRLKTDLV 326 (451)
T ss_dssp EEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTE-EEEEEEESS--CCTTHHHHHGGGBCSCHH
T ss_pred eEEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-cEEEEEecC--CCCcHHHHHHHHcCCCHH
Confidence 4445554 6776543 344444443 1444 566899999998 999999976 6654432 24567777
Q ss_pred HHHHHHH
Q psy10366 214 DLVIQKM 220 (340)
Q Consensus 214 ~~vi~~i 220 (340)
+.++...
T Consensus 327 ~~~~~~~ 333 (451)
T 2yrx_A 327 EAVLAVM 333 (451)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7776644
No 47
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=99.74 E-value=1.2e-17 Score=162.86 Aligned_cols=194 Identities=16% Similarity=0.156 Sum_probs=137.2
Q ss_pred HHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCcc-------c-ccEEEecCCCCc
Q psy10366 10 KNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKE-------M-YPVVFKIGHAHS 81 (340)
Q Consensus 10 r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~-------~-~PvVvKp~~Gs~ 81 (340)
..++..|+..|+ +.|+++++.+|.|| ..+.++|+++| +|+++.....+..+ + ||+||||..|..
T Consensus 88 ~~~~~~l~~~g~-~~~~~~~~~~~~dK----~~~k~~l~~~G---ip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~~~~ 159 (389)
T 3q2o_A 88 YRCLQWLEKHAY-LPQGSQLLSKTQNR----FTEKNAIEKAG---LPVATYRLVQNQEQLTEAIAELSYPSVLKTTTGGY 159 (389)
T ss_dssp HHHHHHHHHHSC-CTTCSHHHHHTTSH----HHHHHHHHHTT---CCCCCEEEESSHHHHHHHHHHHCSSEEEEESSCCS
T ss_pred HHHHHHHHhhCc-cCCCHHHHHHhcCH----HHHHHHHHHCC---CCCCCeEEECCHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 357788888887 88999999999999 45555689999 68544433332222 2 899999999965
Q ss_pred -ccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEECC---eEEE--EEE-EecCCCcccccCCceeeecC
Q psy10366 82 -GFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIGS---NYKA--FQR-KSISGNWKTNTGSAMLEQIP 154 (340)
Q Consensus 82 -G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG~---~v~A--~~R-~s~~~~WktNvgga~~e~~~ 154 (340)
|+|+.+++|.+++....+.+. ...+++|+||+.++++.|.++++ ++.+ ..+ ....+.+ .....+..
T Consensus 160 ~g~Gv~~v~~~~el~~~~~~~~--~~~~lvEe~i~g~~E~~v~~~~~~~G~~~~~~~~e~~~~~g~~-----~~~~~p~~ 232 (389)
T 3q2o_A 160 DGKGQVVLRSEADVDEARKLAN--AAECILEKWVPFEKEVSVIVIRSVSGETKVFPVAENIHVNNIL-----HESIVPAR 232 (389)
T ss_dssp SSCCEEEESSGGGHHHHHHHHH--HSCEEEEECCCCSEEEEEEEEECTTCCEEECCCEEEEEETTEE-----EEEEESCS
T ss_pred CCCCeEEECCHHHHHHHHHhcC--CCCEEEEecccCceEEEEEEEEcCCCCEEEecCeeeEEcCCce-----EEEECCCC
Confidence 899999999999988777654 34566899999779999999953 4432 222 2112211 11222333
Q ss_pred CCh----HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchh--HHHHHHHHHHHHHH
Q psy10366 155 MTD----HYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQE--EDRRFIVDLVIQKM 220 (340)
Q Consensus 155 ~~e----e~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~--~~~~~IA~~vi~~i 220 (340)
+++ +.++++.+++++++--++++||++.+++|++||+|||.. |+..++.. .++.++.+..+..+
T Consensus 233 l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~dg~~~viEiNpR--~~~s~~~~~~~~g~~~~~~~~r~~ 302 (389)
T 3q2o_A 233 ITEELSQKAIAYAKVLADELELVGTLAVEMFATADGEIYINELAPR--PHNSGHYTQDACETSQFGQHIRAI 302 (389)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTSCEEEEEEESS--CCGGGTTHHHHBSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCCCEEEEEeeCC--CCCchhHHHHHcCCCHHHHHHHHH
Confidence 444 567888888898854469999999999999999999977 87766543 44555555555444
No 48
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=99.74 E-value=6.9e-18 Score=159.54 Aligned_cols=189 Identities=14% Similarity=0.117 Sum_probs=116.1
Q ss_pred HHHHHhCCCcc-cCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCC--------ccc-ccEEEecCCCCcc
Q psy10366 13 LLGFNIGGIPS-INTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF--------KEM-YPVVFKIGHAHSG 82 (340)
Q Consensus 13 l~~le~~Gvpv-iNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~--------~~~-~PvVvKp~~Gs~G 82 (340)
...|+..|+|+ .|+++++.+|.|| ..+.++++++| +|+ |.++.... .++ ||+||||..|++|
T Consensus 91 ~~~l~~~g~~~~~~~~~~~~~~~dK----~~~~~~l~~~g---ip~-p~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~ 162 (331)
T 2pn1_A 91 TERFQAIGVTVIVSPYAACELCFDK----YTMYEYCLRQG---IAH-ARTYATMASFEEALAAGEVQLPVFVKPRNGSAS 162 (331)
T ss_dssp HHHHHTTTCEECCCCHHHHHHHHBH----HHHHHHHHHHT---CCC-CCEESSHHHHHHHHHTTSSCSCEEEEESBC---
T ss_pred HHHHHhCCcEEecCCHHHHHHhhCH----HHHHHHHHHcC---CCC-CcEEecHHHhhhhhhcccCCCCEEEEeCCCCCC
Confidence 44688889975 6899999999999 44455688999 684 44443211 234 8999999999999
Q ss_pred cceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEEC----CeEE-EEEEEecCCCcccccCCceeeecCCCh
Q psy10366 83 FGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIG----SNYK-AFQRKSISGNWKTNTGSAMLEQIPMTD 157 (340)
Q Consensus 83 ~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG----~~v~-A~~R~s~~~~WktNvgga~~e~~~~~e 157 (340)
.|+.+++|.+++...... ...+++||||+ |+++.|.++. |+++ .+.+.. ..++ .|..........+
T Consensus 163 ~gv~~v~~~~el~~~~~~----~~~~lvee~i~-G~e~~v~~~~d~~~G~~~~~~~~~~--~~~~--~g~~~~~~~~~~~ 233 (331)
T 2pn1_A 163 IEVRRVETVEEVEQLFSK----NTDLIVQELLV-GQELGVDAYVDLISGKVTSIFIKEK--LTMR--AGETDKSRSVLRD 233 (331)
T ss_dssp ------------------------CEEEEECCC-SEEEEEEEEECTTTCCEEEEEEEEE--EEEE--TTEEEEEEEECCH
T ss_pred CCeEEeCCHHHHHHHHHh----CCCeEEEecCC-CcEEEEEEEEecCCCeEEEEEEEEE--EEec--CCceeEeEEeccH
Confidence 999999999988775432 23456899999 4777776664 6765 343431 1122 2211111224678
Q ss_pred HHHHHHHHHHHHhCCC-cEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHHH
Q psy10366 158 HYKLWIDEVAELFGGL-DICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 158 e~~~~a~~aa~a~~Gl-diaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i~ 221 (340)
++++++.++++++ |+ ++++||++. .+|+++|+|||.. +++...+...++.++++.+++.+.
T Consensus 234 ~~~~~~~~~~~~l-g~~G~~~vd~~~-~~g~~~~iEiN~R-~~g~~~~~~~~G~~~~~~~~~~~~ 295 (331)
T 2pn1_A 234 DVFELVEHVLDGS-GLVGPLDFDLFD-VAGTLYLSEINPR-FGGGYPHAYECGVNFPAQLYRNLM 295 (331)
T ss_dssp HHHHHHHHHHTTT-CCCEEEEEEEEE-ETTEEEEEEEESS-CCTTHHHHHHTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh-CCcceEEEEEEE-cCCCEEEEEEeCC-CCCchHHHHHcCCCHHHHHHHHHc
Confidence 8999999999988 55 799999985 5778999999963 455555566778888888877664
No 49
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=99.73 E-value=4.6e-17 Score=167.02 Aligned_cols=199 Identities=15% Similarity=0.159 Sum_probs=133.5
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccc---------------------------
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITY--------------------------- 62 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~--------------------------- 62 (340)
.+...++..|+|++ ++++++..|.|| ..+.++++++| +|+++...
T Consensus 139 ~~a~~le~~Gi~~iGp~~~ai~~~~DK----~~~k~ll~~~G---VPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 211 (540)
T 3glk_A 139 KLPELLCKNGVAFLGPPSEAMWALGDK----IASTVVAQTLQ---VPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDK 211 (540)
T ss_dssp HHHHHHHHTTCEESSCCHHHHC---CH----HHHHHHHHHTT---CCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHH
T ss_pred HHHHHHHHcCCceeCCCHHHHHHhCCH----HHHHHHHHHcC---CCCCCcccccccccccccccccccccccccccccc
Confidence 35677999999998 999999999999 55556689999 68655433
Q ss_pred --cCCCc-------cc-ccEEEecCCCCcccceEEecChhhHHHHHHHHHhh--CceEEeecCCCCCCcEEEEEECC---
Q psy10366 63 --YPNFK-------EM-YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVA--NTYCTTEPYIDSKFDVHVQKIGS--- 127 (340)
Q Consensus 63 --~~~~~-------~~-~PvVvKp~~Gs~G~Gv~lv~~~~~l~~i~~~l~~~--~~~~~vQefI~~g~DIRv~VIG~--- 127 (340)
..+.. ++ ||+||||..|.+|+|+.++++.+++.......... ...+++|+||+..+.+.|.++++
T Consensus 212 ~~v~s~~ea~~~a~~igyPvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~g~rei~V~vl~d~~G 291 (540)
T 3glk_A 212 GCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQYG 291 (540)
T ss_dssp TSCCSHHHHHHHHHHHCSSEEEEETTCC----EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCSSEEEEEEEEEECTTS
T ss_pred cCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCC
Confidence 11111 12 99999999999999999999999988877765432 34567899998779999999975
Q ss_pred eEEEE-EEEecCCCcccccCCceeeecC-CC----hHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCccccc
Q psy10366 128 NYKAF-QRKSISGNWKTNTGSAMLEQIP-MT----DHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLM 201 (340)
Q Consensus 128 ~v~A~-~R~s~~~~WktNvgga~~e~~~-~~----ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~ 201 (340)
+++.+ .|.. .-++-+..--...+.+ ++ +++.+++.+++++++--+++.||++.+++|++|++|||.. ++-
T Consensus 292 ~vv~l~~rd~--s~qr~~~k~ie~~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~VEf~~d~dg~~~~lEiNpR--~~~ 367 (540)
T 3glk_A 292 NAVSLFGRDC--SIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQDGSFHFLELNPR--LQV 367 (540)
T ss_dssp CEEEEEEEEE--EEC---CCSEEEESCTTSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTSCEEEEEEECS--CCT
T ss_pred CEEEEeceee--eeeecccceEEecCCCCCCHHHHHHHHHHHHHHHHHcCCccceEEEEEEcCCCCEEEEEEECC--CCC
Confidence 45543 3321 1111121100111222 23 4567888888999854478999999998999999999976 554
Q ss_pred cc--chhHHHHHHHHHHHHHH
Q psy10366 202 GE--TQEEDRRFIVDLVIQKM 220 (340)
Q Consensus 202 ~g--~~~~~~~~IA~~vi~~i 220 (340)
+. .+..++.|+.+..+...
T Consensus 368 ~~~vte~~tGvdl~~~~lr~a 388 (540)
T 3glk_A 368 EHPCTEMIADVNLPAAQLQIA 388 (540)
T ss_dssp THHHHHHHHTCCHHHHHHHHH
T ss_pred cchhhHhHhCCCHHHHHHHHH
Confidence 33 23467788877777544
No 50
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=99.73 E-value=7e-17 Score=167.26 Aligned_cols=199 Identities=15% Similarity=0.159 Sum_probs=141.3
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccc---------------------------
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITY--------------------------- 62 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~--------------------------- 62 (340)
.+...|+..|++++ ++++++..|.|| ..+.++++++| +|+++...
T Consensus 155 ~~a~~le~~Gi~~iGp~~~ai~~~~DK----~~ak~ll~~aG---VPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (587)
T 3jrx_A 155 KLPELLCKNGVAFLGPPSEAMWALGDK----IASTVVAQTLQ---VPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDK 227 (587)
T ss_dssp HHHHHHHTTTCEESSCCHHHHHHHCSH----HHHHHHHHHTT---CCBCCBTTTTCCCCC------CCCCCCCCHHHHHT
T ss_pred HHHHHHHHCCCCeeCCCHHHHHHhCCH----HHHHHHHHHcC---CCCCCeecccccccccccccccccccccchhhccc
Confidence 35678999999999 999999999999 55556689999 68655433
Q ss_pred --cCCCc-------cc-ccEEEecCCCCcccceEEecChhhHHHHHHHHHhh--CceEEeecCCCCCCcEEEEEECC---
Q psy10366 63 --YPNFK-------EM-YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVA--NTYCTTEPYIDSKFDVHVQKIGS--- 127 (340)
Q Consensus 63 --~~~~~-------~~-~PvVvKp~~Gs~G~Gv~lv~~~~~l~~i~~~l~~~--~~~~~vQefI~~g~DIRv~VIG~--- 127 (340)
..+.. ++ ||+||||..|.+|+|+.+++|.++|.......... ...+++|+||+..+.+.|.++++
T Consensus 228 ~~v~s~eea~~~a~~iGyPvVVKp~~GgGGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g~rei~V~vl~D~~G 307 (587)
T 3jrx_A 228 GCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQYG 307 (587)
T ss_dssp TSCCSHHHHHHHHHHHCSSEEEEETTCCSSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCSCEEEEEEEEECSSS
T ss_pred cccCCHHHHHHHHHhcCCeEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCC
Confidence 11111 12 99999999999999999999999988877765432 34567899999879999999975
Q ss_pred eEEEE-EEEecCCCcccccCCceeeecC-CC----hHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCccccc
Q psy10366 128 NYKAF-QRKSISGNWKTNTGSAMLEQIP-MT----DHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLM 201 (340)
Q Consensus 128 ~v~A~-~R~s~~~~WktNvgga~~e~~~-~~----ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~ 201 (340)
+++++ .|.. .-++-+..--...+.+ ++ +++.+++.+++++++--+++.||++.+++|++|++|||.. ++-
T Consensus 308 ~vv~l~~rd~--siqrr~qk~ie~aPa~~l~~~~~~~i~~~A~~~a~alGy~G~~~VEfl~d~dG~~yflEINpR--l~~ 383 (587)
T 3jrx_A 308 NAVSLFGRDC--SIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQDGSFHFLELNPR--LQV 383 (587)
T ss_dssp CEEEEEEEEE--EEESSSCEEEEEESCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECSSSCEEEEEEESS--CCT
T ss_pred CEEEEeeeec--cccccccceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEeCC--CCC
Confidence 45543 3421 1112121000011222 23 4567788888999854478999999998999999999976 554
Q ss_pred cc--chhHHHHHHHHHHHHHH
Q psy10366 202 GE--TQEEDRRFIVDLVIQKM 220 (340)
Q Consensus 202 ~g--~~~~~~~~IA~~vi~~i 220 (340)
+. .+..++.|+.+..+...
T Consensus 384 e~~vte~~tGvdlv~~~lria 404 (587)
T 3jrx_A 384 EHPCTEMIADVNLPAAQLQIA 404 (587)
T ss_dssp THHHHHHHHTCCHHHHHHHHH
T ss_pred ccceeccccCCCHHHHHHHHH
Confidence 33 23366788877776544
No 51
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.73 E-value=1.2e-16 Score=157.10 Aligned_cols=198 Identities=12% Similarity=0.082 Sum_probs=135.5
Q ss_pred HHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc-ccEEEecCCCCcccce
Q psy10366 14 LGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM-YPVVFKIGHAHSGFGK 85 (340)
Q Consensus 14 ~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~PvVvKp~~Gs~G~Gv 85 (340)
..++..|.++.|+++++.+|.|| ..+.++++++| +|+++...+.+.. ++ ||+||||..|++|+|+
T Consensus 85 ~~~~~l~~~~g~~~~~~~~~~dK----~~~k~~l~~~g---ip~p~~~~~~~~~e~~~~~~~~g~PvvvKp~~~~gg~Gv 157 (412)
T 1vkz_A 85 GVSNWRSNVFGPVKEVARLEGSK----VYAKRFMKKYG---IRTARFEVAETPEELREKIKKFSPPYVIKADGLARGKGV 157 (412)
T ss_dssp -----CTTBSSCCHHHHHHHHCH----HHHHHHHHHTT---CCCCCEEEESSHHHHHHHHTTSCSSEEEEESSCCSSCCE
T ss_pred HHHHHhhhhhCCCHHHHHHhcCH----HHHHHHHHHcC---CCCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCCE
Confidence 44556666667999999999999 44445689999 6854432222221 23 8999999999999999
Q ss_pred EEecChhhHHHHHHHHHh----hC--ceEEeecCCCCCCcEEEEEE-CCe-EEEEE--EE---ecCCCcccccCC-ceee
Q psy10366 86 VRVESNQDFQDMAGVVAV----AN--TYCTTEPYIDSKFDVHVQKI-GSN-YKAFQ--RK---SISGNWKTNTGS-AMLE 151 (340)
Q Consensus 86 ~lv~~~~~l~~i~~~l~~----~~--~~~~vQefI~~g~DIRv~VI-G~~-v~A~~--R~---s~~~~WktNvgg-a~~e 151 (340)
.+++|.+++....+.+.. .. ..+++||||+ |+++.|.++ +|+ +..+. +. ...++++.|+++ +...
T Consensus 158 ~~v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~-G~E~sv~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 236 (412)
T 1vkz_A 158 LILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA-GNELSAMAVVNGRNFVILPFVRDYKRLMDGDRGPNTGGMGSWG 236 (412)
T ss_dssp EEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC-SEEEEEEEEEETTEEEECCCCEECCEEETTTEEEECSCSEEEE
T ss_pred EEECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc-CcEEEEEEEECCCEEEEeeeeEeeeeccCCCCCCCCCCceEEE
Confidence 999999998887665431 11 2577899999 899999988 444 44332 21 123456667763 4555
Q ss_pred ecCCChH----HHHHHHHHHHHhC----CC-cEEEEeEEEcCCCCeEEEeecCCcccccccc---hhHHHHHHHHHHHHH
Q psy10366 152 QIPMTDH----YKLWIDEVAELFG----GL-DICALEIIVGKDGKEHIIEVNDSALSLMGET---QEEDRRFIVDLVIQK 219 (340)
Q Consensus 152 ~~~~~ee----~~~~a~~aa~a~~----Gl-diaGVDll~~~dG~~~VlEVN~s~~P~~~g~---~~~~~~~IA~~vi~~ 219 (340)
|.+++++ .++++.+++++++ +. +++.||++.+++| +||+|||.. |+..++ ...++.++++.++..
T Consensus 237 P~~l~~~~~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~~viEiN~R--~g~~~~~~~~~~~g~d~~~~~~~~ 313 (412)
T 1vkz_A 237 PVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGD-PYILEYNVR--LGDPETEVIVTLNPEGFVNAVLEG 313 (412)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEETTE-EEEEEEESS--CCTTHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEECCC-cEEEEEecC--CCCCcceeehhhcCCCHHHHHHHH
Confidence 6667764 4667777777772 22 6677899999998 999999976 665544 335678888877766
Q ss_pred HHh
Q psy10366 220 MQV 222 (340)
Q Consensus 220 i~~ 222 (340)
+..
T Consensus 314 ~~g 316 (412)
T 1vkz_A 314 YRG 316 (412)
T ss_dssp HHT
T ss_pred hcC
Confidence 543
No 52
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=99.73 E-value=8.4e-17 Score=159.26 Aligned_cols=200 Identities=16% Similarity=0.170 Sum_probs=138.5
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCccccc--ccCCC----cc----c-ccEEEecCC
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDIT--YYPNF----KE----M-YPVVFKIGH 78 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t--~~~~~----~~----~-~PvVvKp~~ 78 (340)
.+...|+..|+|++ |+++++.+|.|| ..+.++++++| +|+++.. .+.+. .+ + ||+||||..
T Consensus 90 ~~~~~~e~~gi~~~g~~~~~~~~~~dK----~~~k~~l~~~g---ip~p~~~~~~~~~~~~~~~~~~~~~g~PvvvKp~~ 162 (449)
T 2w70_A 90 NFAEQVERSGFIFIGPKAETIRLMGDK----VSAIAAMKKAG---VPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASG 162 (449)
T ss_dssp HHHHHHHHTTCEESSSCHHHHHHHHSH----HHHHHHHHHHT---CCBCSBCSSCCCSCHHHHHHHHHHHCSSEEEEETT
T ss_pred HHHHHHHHcCCceECCCHHHHHHhcCH----HHHHHHHHHcC---CCcCCCcccccCCHHHHHHHHHHHhCCcEEEEECC
Confidence 46788999999975 689999999999 44455689999 6854443 22221 11 2 899999999
Q ss_pred CCcccceEEecChhhHHHHHHHHHh------hCceEEeecCCCCCCcEEEEEEC---CeEEEEE-EEecCCCcccccCCc
Q psy10366 79 AHSGFGKVRVESNQDFQDMAGVVAV------ANTYCTTEPYIDSKFDVHVQKIG---SNYKAFQ-RKSISGNWKTNTGSA 148 (340)
Q Consensus 79 Gs~G~Gv~lv~~~~~l~~i~~~l~~------~~~~~~vQefI~~g~DIRv~VIG---~~v~A~~-R~s~~~~WktNvgga 148 (340)
|++|+|+.+++|.+++....+.+.. .+..+++||||+.+++++|.+++ |+++.+. |.. .-|+.+....
T Consensus 163 g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~~~~~~~G~~~~~~~~~~--~~~~~~~~~~ 240 (449)
T 2w70_A 163 GGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDC--SMQRRHQKVV 240 (449)
T ss_dssp CCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEEECTTSCEEEEEEEEE--EEEETTEEEE
T ss_pred CCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCCCeEEEEEEEEcCCCCEEEEeceec--ccccCCccee
Confidence 9999999999999998877654432 13456789999977899999985 5665433 321 1122221111
Q ss_pred eeeecC-CC----hHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCccccccc--chhHHHHHHHHHHHHHHH
Q psy10366 149 MLEQIP-MT----DHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGE--TQEEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 149 ~~e~~~-~~----ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g--~~~~~~~~IA~~vi~~i~ 221 (340)
...+.. ++ +++++++.+++++++--++++||++.++ |+++|+|||.. ++-.. ++..++.++.+.+++.+.
T Consensus 241 ~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~~~~viEiN~R--~~~~~~~~~~~~g~dl~~~~~~~~~ 317 (449)
T 2w70_A 241 EEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFEN-GEFYFIEMNTR--IQVEHPVTEMITGVDLIKEQLRIAA 317 (449)
T ss_dssp EEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TEEEEEEEECS--CCTTHHHHHHHHCCCHHHHHHHHHH
T ss_pred eeCCcccCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEC-CCEEEEEEECC--CCccchHHHHHhCCCHHHHHHHHHC
Confidence 111222 44 3567888888999843458899999987 67999999976 44332 344567888888887665
Q ss_pred h
Q psy10366 222 V 222 (340)
Q Consensus 222 ~ 222 (340)
.
T Consensus 318 G 318 (449)
T 2w70_A 318 G 318 (449)
T ss_dssp T
T ss_pred C
Confidence 3
No 53
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=99.72 E-value=1.3e-16 Score=160.90 Aligned_cols=198 Identities=15% Similarity=0.143 Sum_probs=141.2
Q ss_pred HHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc-ccEEEecCCCCc
Q psy10366 10 KNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM-YPVVFKIGHAHS 81 (340)
Q Consensus 10 r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~PvVvKp~~Gs~ 81 (340)
..+.+.++..|+| .++++++.+|.|| ..+.++++++| +|+++........ ++ ||+||||..|.+
T Consensus 115 ~~~a~~~e~~Gi~-g~~~~ai~~~~DK----~~~k~~l~~~G---Ipvp~~~~v~s~ee~~~~~~~lg~PvVVKP~~g~g 186 (474)
T 3vmm_A 115 APMAKACERLGLR-GAGVQAAENARDK----NKMRDAFNKAG---VKSIKNKRVTTLEDFRAALEEIGTPLILKPTYLAS 186 (474)
T ss_dssp HHHHHHHHHTTCC-CSCHHHHHHTTCH----HHHHHHHHHTT---SCCCCEEEECSHHHHHHHHHHSCSSEEEEESSCCT
T ss_pred HHHHHHHHHcCCC-CCCHHHHHHhhCH----HHHHHHHHHcC---CCCCCeEEECCHHHHHHHHHHcCCCEEEEECCCCc
Confidence 4577889999999 9999999999999 55556689999 6854433222222 23 899999999999
Q ss_pred ccceEEecChhhHHHHHHHHHh------------hCceEEeecCCCC-C------------CcEEEEEECCeEE--EEEE
Q psy10366 82 GFGKVRVESNQDFQDMAGVVAV------------ANTYCTTEPYIDS-K------------FDVHVQKIGSNYK--AFQR 134 (340)
Q Consensus 82 G~Gv~lv~~~~~l~~i~~~l~~------------~~~~~~vQefI~~-g------------~DIRv~VIG~~v~--A~~R 134 (340)
|+|+.+++|.+++......... ....+++||||+. . +.+.+++.++++. .+.+
T Consensus 187 g~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~e~~~~q~~~~~~e~sv~~v~~dg~~~~v~i~~ 266 (474)
T 3vmm_A 187 SIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGYSDYISIEGIMADGEYFPIAIHD 266 (474)
T ss_dssp TTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBCHHHHCSSSSSCSEEEEEEEEETTEEEEEEEEE
T ss_pred CceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCceeeeeecccccceeEEEEEEECCeEEEEEEEe
Confidence 9999999999998887765432 1345778999993 2 4677788888863 3333
Q ss_pred EecCCCcccccCCceeeecCCCh----HHHHHHHHHHHHhCCCcEEE--EeEEEcCCCCeEEEeecCCcccc-c---ccc
Q psy10366 135 KSISGNWKTNTGSAMLEQIPMTD----HYKLWIDEVAELFGGLDICA--LEIIVGKDGKEHIIEVNDSALSL-M---GET 204 (340)
Q Consensus 135 ~s~~~~WktNvgga~~e~~~~~e----e~~~~a~~aa~a~~GldiaG--VDll~~~dG~~~VlEVN~s~~P~-~---~g~ 204 (340)
+-.+..|. ......+.++++ ++.+++.++++++ |+.-++ ||++.+++|+++++|||.. ++ . .-+
T Consensus 267 ~~~~~~~~---~~~~~~Pa~l~~~~~~~l~~~a~~~~~al-G~~g~~~~vef~~~~dg~~~~iEvNpR--~~G~~~~~~~ 340 (474)
T 3vmm_A 267 KTPQIGFT---ETSHITPSILDEEAKKKIVEAAKKANEGL-GLQNCATHTEIKLMKNREPGLIESAAR--FAGWNMIPNI 340 (474)
T ss_dssp ECCCBTTB---CCEEEESCCCCHHHHHHHHHHHHHHHHHH-TCCSEEEEEEEEEEGGGEEEEEEEESS--CCSTTHHHHH
T ss_pred eccCCCcc---ceEEEECCCCCHHHHHHHHHHHHHHHHHc-CCCCccEEEEEEEcCCCCEEEEEEeCC--CCCCchHHHH
Confidence 32222222 223333444554 5677888889998 665555 9999998998999999964 32 1 114
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy10366 205 QEEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 205 ~~~~~~~IA~~vi~~i~ 221 (340)
+..++.++++.+++...
T Consensus 341 ~~~tG~dl~~~~i~~a~ 357 (474)
T 3vmm_A 341 KKVFGLDMAQLLLDVLC 357 (474)
T ss_dssp HHHHCCCHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHc
Confidence 55778899998887776
No 54
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=99.71 E-value=7.8e-17 Score=159.89 Aligned_cols=180 Identities=16% Similarity=0.137 Sum_probs=132.1
Q ss_pred HHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCC-------cc----cccEEEecC-
Q psy10366 10 KNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNF-------KE----MYPVVFKIG- 77 (340)
Q Consensus 10 r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~-------~~----~~PvVvKp~- 77 (340)
..++..|+.. .++.++++++.+|.|| ..+.++++++| +|+++.....+. ++ +||+||||.
T Consensus 109 ~~~~~~l~~~-~~vgp~~~a~~~~~dK----~~~k~~l~~~G---ip~p~~~~v~~~~e~~~~~~~~~~~~~P~VvKp~~ 180 (419)
T 4e4t_A 109 AASLDFLART-TFVAPAGRCVAVAQDR----IAEKRFIEASG---VPVAPHVVIESAAALAALDDAALDAVLPGILKTAR 180 (419)
T ss_dssp HHHHHHHHTT-SEESSCHHHHHHHTCH----HHHHHHHHHTT---CCBCCEEEECSHHHHHTSCHHHHHTTCSEEEEESS
T ss_pred HHHHHHHHcc-CCcCCCHHHHHHhcCH----HHHHHHHHHcC---cCCCCeEEECCHHHHHHHHHhhccccCCEEEEecC
Confidence 4678888888 5899999999999999 45555689999 685443332221 12 389999999
Q ss_pred CCCcccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEEC---CeEEE---EEEEecCCCcccccCCceee
Q psy10366 78 HAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIG---SNYKA---FQRKSISGNWKTNTGSAMLE 151 (340)
Q Consensus 78 ~Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG---~~v~A---~~R~s~~~~WktNvgga~~e 151 (340)
.|++|+|+.+++|.+++....+.+ ....+++|+||+.++.+.|.+++ |++.. ..+....+.+. ....
T Consensus 181 ~g~~G~Gv~~v~~~~el~~a~~~~--~~~~~lvEe~i~~~~Eisv~v~~~~~G~~~~~~~~e~~~~~g~~~-----~~~~ 253 (419)
T 4e4t_A 181 LGYDGKGQVRVSTAREARDAHAAL--GGVPCVLEKRLPLKYEVSALIARGADGRSAAFPLAQNVHHNGILA-----LTIV 253 (419)
T ss_dssp SCCTTTTEEEECSHHHHHHHHHHT--TTCCEEEEECCCEEEEEEEEEEECTTSCEEECCCEEEEEETTEEE-----EEEE
T ss_pred CCCCCCceEEECCHHHHHHHHHhc--CCCcEEEeecCCCCeEEEEEEEEcCCCCEEEEeCeEEEeeCCeEE-----EEEc
Confidence 899999999999999988877654 23456789999988999999994 34432 22221112121 1122
Q ss_pred ecC-CC----hHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchh
Q psy10366 152 QIP-MT----DHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQE 206 (340)
Q Consensus 152 ~~~-~~----ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~ 206 (340)
|.+ ++ ++.++++.+++++++.-++++||++.++||++||+|||.. |+-.|+..
T Consensus 254 Pa~~l~~~~~~~~~~~a~~i~~~lg~~G~~~vE~~~~~dG~~~v~EiNpR--~~~sg~~t 311 (419)
T 4e4t_A 254 PAPAADTARVEEAQQAAVRIADTLGYVGVLCVEFFVLEDGSFVANEMAPR--PHNSGHYT 311 (419)
T ss_dssp SCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTCCEEEEEEESS--CCGGGTTH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEeCCCCEEEEEEeCC--CCCCCCeE
Confidence 344 45 4567888888999966679999999999999999999977 88777554
No 55
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=99.70 E-value=1e-16 Score=156.32 Aligned_cols=179 Identities=14% Similarity=0.192 Sum_probs=127.8
Q ss_pred HHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCcc-------c-ccEEEecCCCC-c
Q psy10366 11 NLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKE-------M-YPVVFKIGHAH-S 81 (340)
Q Consensus 11 ~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~-------~-~PvVvKp~~Gs-~ 81 (340)
..+..|+..+ .+.++++++.+|.|| ..+.++++++| +|+++........+ + ||+||||..|. +
T Consensus 87 ~~l~~l~~~~-~v~p~~~~~~~~~dK----~~~k~~l~~~G---ip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~gg~~ 158 (377)
T 3orq_A 87 QQLKLLCEKY-NIPQGYQAIQLLQDR----LTEKETLKSAG---TKVVPFISVKESTDIDKAIETLGYPFIVKTRFGGYD 158 (377)
T ss_dssp HHHHHHHHHS-CCTTTTHHHHHHHSH----HHHHHHHHHTT---CCBCCEEEECSSTHHHHHHHHTCSSEEEEESSSCCT
T ss_pred HHHHHHhhhc-CCCCCHHHHHHhcCH----HHHHHHHHHCC---CCCCCeEEECCHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 3566666654 566999999999999 44455689999 68555443333332 3 89999999996 8
Q ss_pred ccceEEecChhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEE-C--CeEEEE--EE-EecCCCcccccCCceeeecCC
Q psy10366 82 GFGKVRVESNQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKI-G--SNYKAF--QR-KSISGNWKTNTGSAMLEQIPM 155 (340)
Q Consensus 82 G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VI-G--~~v~A~--~R-~s~~~~WktNvgga~~e~~~~ 155 (340)
|+|+.++++.+++....+.+. ...+++|+||+..+++.|.++ + |++.++ .. ....+..... ..|..+
T Consensus 159 g~Gv~~v~~~~el~~a~~~~~--~~~~ivEe~i~g~~E~sv~~~~~~~g~~~~~~~~e~~~~~g~~~~~-----~~Pa~l 231 (377)
T 3orq_A 159 GKGQVLINNEKDLQEGFKLIE--TSECVAEKYLNIKKEVSLTVTRGNNNQITFFPLQENEHRNQILFKT-----IVPARI 231 (377)
T ss_dssp TTTEEEECSTTSHHHHHHHHT--TSCEEEEECCCEEEEEEEEEEECGGGCEEECCCEEEEEETTEEEEE-----EESCSS
T ss_pred CCCeEEECCHHHHHHHHHhcC--CCcEEEEccCCCCEEEEEEEEEeCCCCEEEECCEeEEEECCEEEEE-----ECCCCC
Confidence 999999999999888776543 345668999997789999999 3 455432 11 1112222111 112223
Q ss_pred --ChHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchh
Q psy10366 156 --TDHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQE 206 (340)
Q Consensus 156 --~ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~ 206 (340)
.++.++++.+++++++.-++++||++.+++|++||+|||.. |+-.|+..
T Consensus 232 ~~~~~~~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~v~EinpR--~~~sg~~t 282 (377)
T 3orq_A 232 DKTAEAKEQVNKIIQSIHFIGTFTVEFFIDSNNQLYVNEIAPR--PHNSGHYS 282 (377)
T ss_dssp CCHHHHHHHHHHHHTTSCCCEEEEEEEEEETTCCEEEEEEESS--CCGGGTTH
T ss_pred CHHHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCcEEEEEeeCC--cCCCCcEe
Confidence 45778899999998855569999999998999999999977 88666654
No 56
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.68 E-value=1.7e-16 Score=166.88 Aligned_cols=201 Identities=13% Similarity=0.121 Sum_probs=103.4
Q ss_pred HHHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccc--cCCCc-------cc-ccEEEecCC
Q psy10366 10 KNLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITY--YPNFK-------EM-YPVVFKIGH 78 (340)
Q Consensus 10 r~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~--~~~~~-------~~-~PvVvKp~~ 78 (340)
-.+...|+..|++++ ++++++..|.|| ..+.++++++| +|++|..+ ..+.. ++ ||+||||..
T Consensus 89 ~~~a~~le~~Gi~~iGp~~~ai~~~~dK----~~~k~~l~~~G---VPvpp~~~~~~~s~~e~~~~a~~igyPvVvKp~~ 161 (681)
T 3n6r_A 89 SKFAEALEAEGVIFVGPPKGAIEAMGDK----ITSKKIAQEAN---VSTVPGYMGLIEDADEAVKISNQIGYPVMIKASA 161 (681)
T ss_dssp HHHHHHHHTTTCCCSSSCHHHHHHTTSH----HHHHHHHHTTT---CCCCCC----------------------------
T ss_pred HHHHHHHHHcCCceECCCHHHHHHhCCH----HHHHHHHHHcC---cCcCCccccCcCCHHHHHHHHHhcCCcEEEEECC
Confidence 467889999999998 899999999999 45555689999 68555321 11111 23 999999999
Q ss_pred CCcccceEEecChhhHHHHHHHHHh------hCceEEeecCCCCCCcEEEEEECC---eEEEE-EEEecCCCcccccCCc
Q psy10366 79 AHSGFGKVRVESNQDFQDMAGVVAV------ANTYCTTEPYIDSKFDVHVQKIGS---NYKAF-QRKSISGNWKTNTGSA 148 (340)
Q Consensus 79 Gs~G~Gv~lv~~~~~l~~i~~~l~~------~~~~~~vQefI~~g~DIRv~VIG~---~v~A~-~R~s~~~~WktNvgga 148 (340)
|.+|+|+.+++|.+++......... .+..+++|+||+..+++.|.++++ +++.+ .|.. .-++-|....
T Consensus 162 ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~rei~V~v~~d~~G~vv~l~~rd~--s~qr~~~k~~ 239 (681)
T 3n6r_A 162 GGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDSHGNGIYLGEREC--SIQRRNQKVV 239 (681)
T ss_dssp -----------------------------------------CCSCEEEEEEEECCSSSCCEEEEEEEC--CCEETTEECE
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCCcEEEEEEEEeCCCCEEEEeeeec--ceeccCccEE
Confidence 9999999999999998877654321 124567899999879999999975 45543 3431 2233332211
Q ss_pred eeeecC-CChH----HHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCccccccc--chhHHHHHHHHHHHHHHH
Q psy10366 149 MLEQIP-MTDH----YKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGE--TQEEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 149 ~~e~~~-~~ee----~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g--~~~~~~~~IA~~vi~~i~ 221 (340)
...+.+ ++++ +.+++.+++++++--.++.||++.+++|++|++|+|.. +.-+. .+..++.|+.+..+....
T Consensus 240 e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~d~dg~~~~lEiNpR--~~~~~~~te~~tGvdl~~~~l~~a~ 317 (681)
T 3n6r_A 240 EEAPSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIVDGQKNFYFLEMNTR--LQVEHPVTELITGVDLVEQMIRVAA 317 (681)
T ss_dssp EEESCSSCCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECTTSCCCCCEEECS--CCTTHHHHHHHHTCCHHHHHHHHHT
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEeCCCCEEEEecccc--cCCCcHHhHHHhCCCHHHHHHHHHC
Confidence 122332 4544 45788888888843357889999999999999999976 53332 334567788887776553
No 57
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.67 E-value=1.4e-16 Score=167.34 Aligned_cols=201 Identities=14% Similarity=0.182 Sum_probs=134.3
Q ss_pred HHHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccc--cCCCcc-------c-ccEEEecCC
Q psy10366 10 KNLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITY--YPNFKE-------M-YPVVFKIGH 78 (340)
Q Consensus 10 r~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~--~~~~~~-------~-~PvVvKp~~ 78 (340)
-.+...++..|++++ ++++++..|.|| ..+.++++++| +|++|... ..+..+ + ||+||||..
T Consensus 115 ~~~a~~le~~Gi~~iGp~~~ai~~~~DK----~~~k~~l~~~G---Vpvpp~~~~~~~s~~e~~~~a~~igyPvvvKp~~ 187 (675)
T 3u9t_A 115 ADFARACEEAGLLFLGPPAAAIDAMGSK----SAAKALMEEAG---VPLVPGYHGEAQDLETFRREAGRIGYPVLLKAAA 187 (675)
T ss_dssp HHHHHHHHTTTCEESSCCHHHHHHHTSH----HHHHHHHHHTT---CCBCCCCCSCCCCTTHHHHHHHHSCSSBCCBCCC
T ss_pred HHHHHHHHHcCCceeCCCHHHHHHhchH----HHHHHHHHHcC---cCcCCccccCCCCHHHHHHHHHhCCCcEEEEECC
Confidence 467889999999988 899999999999 45555689999 68555332 122222 2 999999999
Q ss_pred CCcccceEEecChhhHHHHHHHHHh------hCceEEeecCCCCCCcEEEEEECC---eEEEE-EEEecCCCcccccCCc
Q psy10366 79 AHSGFGKVRVESNQDFQDMAGVVAV------ANTYCTTEPYIDSKFDVHVQKIGS---NYKAF-QRKSISGNWKTNTGSA 148 (340)
Q Consensus 79 Gs~G~Gv~lv~~~~~l~~i~~~l~~------~~~~~~vQefI~~g~DIRv~VIG~---~v~A~-~R~s~~~~WktNvgga 148 (340)
|.+|+|+.+++|.+++......... .+..+++|+||+..+.+.|.++++ +++.+ .|.. .-.+-+..-.
T Consensus 188 G~Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~reiev~v~~d~~G~vv~l~~rd~--s~qr~~qk~i 265 (675)
T 3u9t_A 188 GGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQVFADRHGHCLYLNERDC--SIQRRHQKVV 265 (675)
T ss_dssp ------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSCBCEEEEEEECSSSCEEEEEEEEC--CCBSSSSBCE
T ss_pred CCCCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCCcEEEEEEEEcCCCCEEEEecccc--ceeeccceEE
Confidence 9999999999999998876653211 123567899999879999999954 56654 4432 1122221111
Q ss_pred eeeecC-CC----hHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCccccccc--chhHHHHHHHHHHHHHHH
Q psy10366 149 MLEQIP-MT----DHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGE--TQEEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 149 ~~e~~~-~~----ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g--~~~~~~~~IA~~vi~~i~ 221 (340)
...+.+ ++ +++.+++.+++++++--+++.||++.+++|++|++|+|.. +.-+. .+..++.|+.+..+....
T Consensus 266 e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~dG~~~~iEiNpR--~~~~~~~te~~tGvdl~~~~l~~a~ 343 (675)
T 3u9t_A 266 EEAPAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDERGQFFFMEMNTR--LQVEHPVTEAITGLDLVAWQIRVAR 343 (675)
T ss_dssp EEESCSSCCHHHHHHHHHHHHHHHHHTTCCSEEEEECCBCTTSCBCBCEEESS--CCTTHHHHHHTTTCCHHHHHHHHHT
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHcCCccceEEEEEEcCCCCEEEEecccc--ccCCchhhhhhcCCCHHHHHHHHHC
Confidence 111222 34 3457788888998843378999999999999999999976 43322 334567888887776553
No 58
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=99.63 E-value=2.1e-15 Score=147.19 Aligned_cols=175 Identities=14% Similarity=0.104 Sum_probs=126.8
Q ss_pred HHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCcc-------c-ccEEEecCC-CCc
Q psy10366 11 NLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKE-------M-YPVVFKIGH-AHS 81 (340)
Q Consensus 11 ~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~-------~-~PvVvKp~~-Gs~ 81 (340)
..|+.|+..| ++.++++++.+|.|| ..+.++++++| +|++++....+..+ + ||+||||.. |++
T Consensus 56 ~~l~~l~~~~-~v~p~~~a~~~~~DK----~~~k~~l~~~G---Iptp~~~~v~~~~e~~~~~~~~G~P~VvKp~~~G~~ 127 (355)
T 3eth_A 56 TALTRQLARH-PAFVNRDVFPIIADR----LTQKQLFDKLH---LPTAPWQLLAERSEWPAVFDRLGELAIVKRRTGGYD 127 (355)
T ss_dssp CHHHHHHHTC-TTBTTTTHHHHHHSH----HHHHHHHHHTT---CCBCCEEEECCGGGHHHHHHHHCSEEEEEESSSCCT
T ss_pred HHHHHHHhcC-CcCCCHHHHHHhcCH----HHHHHHHHHCc---cCCCCEEEECCHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 3688899998 999999999999999 45555689999 69655544433332 2 999999998 599
Q ss_pred ccceEEecC--hhhHHHHHHHHHhhCceEEeecCCCCCCcEEEEEEC---CeEEEE---EEEecCCCcccccCCceeeec
Q psy10366 82 GFGKVRVES--NQDFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKIG---SNYKAF---QRKSISGNWKTNTGSAMLEQI 153 (340)
Q Consensus 82 G~Gv~lv~~--~~~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VIG---~~v~A~---~R~s~~~~WktNvgga~~e~~ 153 (340)
|+|+.++++ .+++.... + + -+++|+||+.++.+-|.++. |++.++ ...-..+..... ..+.
T Consensus 128 GkGv~~v~~~~~~el~~a~--~---~-~vivEe~I~~~~Eisv~v~~~~~G~~~~~p~~e~~~~~g~~~~~-----~~pa 196 (355)
T 3eth_A 128 GRGQWRLRANETEQLPAEC--Y---G-ECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTS-----VAFP 196 (355)
T ss_dssp TTTEEEEETTCGGGSCGGG--T---T-TEEEEECCCCSEEEEEEEEECTTSCEEECCCEEEEEETTEEEEE-----EECS
T ss_pred CCeEEEEcCCCHHHHHHHh--h---C-CEEEEEccCCCcEEEEEEEEcCCCCEEEECCEEEEeeCCeEEEE-----ECCC
Confidence 999999999 88876621 1 2 36789999999999999983 355432 111112222111 1223
Q ss_pred CCCh----HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCcccccccchhH
Q psy10366 154 PMTD----HYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEE 207 (340)
Q Consensus 154 ~~~e----e~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~ 207 (340)
.+++ +.++++.+++++++.-++++||++.+++ ++||+|||.. |+-.|+...
T Consensus 197 ~l~~~~~~~~~~~a~~i~~aLg~~G~~~vEf~~~~~-~~~v~EinpR--~~~sg~~t~ 251 (355)
T 3eth_A 197 QANAQQQARAEEMLSAIMQELGYVGVMAMECFVTPQ-GLLINELAPR--VHNSGHWTQ 251 (355)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETT-EEEEEEEESS--CCGGGTTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEECC-cEEEEEeeCC--CCCCccEEe
Confidence 4443 4578888889999777899999999865 6999999976 887776543
No 59
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=99.63 E-value=1.4e-15 Score=146.27 Aligned_cols=181 Identities=15% Similarity=0.188 Sum_probs=124.2
Q ss_pred HHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCccc-ccEEEecCCCCcccceEEecChh
Q psy10366 14 LGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM-YPVVFKIGHAHSGFGKVRVESNQ 92 (340)
Q Consensus 14 ~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~~-~PvVvKp~~Gs~G~Gv~lv~~~~ 92 (340)
...+..|+|+.++++++.+|.|| ..+.++++++| +| +|.+ ..+ ||+||||..|++|+|+.+++|.+
T Consensus 82 ~~~~~~~~~~g~~~~a~~~~~dK----~~~k~~l~~~g---ip-~~~~-----~~ig~P~vvKp~~g~g~~gv~~v~~~~ 148 (363)
T 4ffl_A 82 SIKEKFSCPVLFDFEAYRISRDK----KKSKDYFKSIG---VP-TPQD-----RPSKPPYFVKPPCESSSVGARIIYDDK 148 (363)
T ss_dssp HHGGGCSSCBCCCHHHHHHHTSH----HHHHHHHHHTT---CC-CCCB-----SCSSSCEEEECSSCCTTTTCEEEC---
T ss_pred HHHHHCCCccCCCHHHHHHhhCH----HHHHHHHHhcC---CC-CCCc-----eecCCCEEEEECCCCCCcCeEEeccHH
Confidence 44688899999999999999999 45556689999 68 3332 234 99999999999999999999988
Q ss_pred hHHHHHHHHHhhCceEEeecCCCCCCcEEEEEE--CCeEEEEEEEecCCCcccccC-CceeeecCCChHHHHHHHHHHHH
Q psy10366 93 DFQDMAGVVAVANTYCTTEPYIDSKFDVHVQKI--GSNYKAFQRKSISGNWKTNTG-SAMLEQIPMTDHYKLWIDEVAEL 169 (340)
Q Consensus 93 ~l~~i~~~l~~~~~~~~vQefI~~g~DIRv~VI--G~~v~A~~R~s~~~~WktNvg-ga~~e~~~~~ee~~~~a~~aa~a 169 (340)
++.. ....+++||||+ |+.+-|.++ ++.+..+... .++..|.+ .....+.+..+++++++.+++++
T Consensus 149 ~~~~-------~~~~~~~ee~i~-g~e~sv~~~~d~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~a~~~~~~ 217 (363)
T 4ffl_A 149 DLEG-------LEPDTLVEEYVE-GEVVSLEVVGDGSHFAVVKET---LVHIDETYDCHMVTPLPANPLFRQISHDLAAN 217 (363)
T ss_dssp ---C-------CCTTCEEEECCC-SEEEEEEEEEESSCEEECCCE---EEEECTTSCEEEEEECCCCHHHHHHHHHHHHT
T ss_pred Hhhh-------hccchhhhhhcc-CcEEEEEEEEECCeEEEEEEE---EeccCCcccceeecchhHHHHHHHHHHHHHHh
Confidence 7643 233445799997 566777766 3444332111 01122333 34566778889999999999999
Q ss_pred hCCCcEEEEeEEEcCCCCeEEEeecCCccccccc--chhHHHHHHHHHHHHHH
Q psy10366 170 FGGLDICALEIIVGKDGKEHIIEVNDSALSLMGE--TQEEDRRFIVDLVIQKM 220 (340)
Q Consensus 170 ~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g--~~~~~~~~IA~~vi~~i 220 (340)
++--++++||++.+++| +||+|||.- +|+... ++..++.++.++.++-+
T Consensus 218 l~~~G~~~vef~~~~~~-~~viEiN~R-~~g~~~~~~~~~~g~dl~~~~~~~~ 268 (363)
T 4ffl_A 218 LPLKGIMDVEAIFGPKG-LRVIEIDAR-FPSQTPTVVYYSSGINLIELLFRAF 268 (363)
T ss_dssp TTCEEEEEEEEEEETTE-EEEEEEECS-CCSSHHHHHHHHHCCCHHHHHHHHT
T ss_pred CCccceeeeeeEEeCCe-EEEEEEeCC-CCCChHHHHHHHHCcCHHHHHHHHH
Confidence 85556999999999765 899999963 344321 23456677777666533
No 60
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=99.63 E-value=5.5e-15 Score=151.20 Aligned_cols=201 Identities=15% Similarity=0.141 Sum_probs=133.5
Q ss_pred HHHHHHhCC--CcccC-ChhHHHHcCCchHHHHHHHHHHHHcCCCCCCccccccc-------------------------
Q psy10366 12 LLLGFNIGG--IPSIN-TLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYY------------------------- 63 (340)
Q Consensus 12 vl~~le~~G--vpviN-s~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~------------------------- 63 (340)
+...|+..| +++++ +++++.+|.|| ..+.++++++| +|+++....
T Consensus 147 ~~~~l~~~g~~i~~~gp~~~a~~~~~dK----~~~k~~l~~~G---Ip~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~ 219 (554)
T 1w96_A 147 LPEKLSQSKRKVIFIGPPGNAMRSLGDK----ISSTIVAQSAK---VPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGC 219 (554)
T ss_dssp HHHHHHHSTTCCEESSCCHHHHHHSCSH----HHHHHHHHHTT---CCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGS
T ss_pred HHHHHHHcCCeEEEeCCCHHHHHHHhCH----HHHHHHHHHCC---CCcCCccccccccccccccccccccccccccccC
Confidence 455688999 88765 56799999999 44445688999 685543322
Q ss_pred -CCCc-------cc-ccEEEecCCCCcccceEEecChhhHHHHHHHHHhh--CceEEeecCCCCCCcEEEEEECC---eE
Q psy10366 64 -PNFK-------EM-YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVA--NTYCTTEPYIDSKFDVHVQKIGS---NY 129 (340)
Q Consensus 64 -~~~~-------~~-~PvVvKp~~Gs~G~Gv~lv~~~~~l~~i~~~l~~~--~~~~~vQefI~~g~DIRv~VIG~---~v 129 (340)
.+.. ++ ||+||||..|.+|+|+.+++|.+++.......... ...+++||||+.++.+.|.++++ ++
T Consensus 220 ~~~~~e~~~~~~~~g~PvVvKp~~g~gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~g~~e~sv~vl~d~~G~v 299 (554)
T 1w96_A 220 CTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGRARHLEVQLLADQYGTN 299 (554)
T ss_dssp CSSHHHHHHHHHHHCSSEEEEETTCCTTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCSCEEEEEEEEECTTSCE
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCCCE
Confidence 1111 12 89999999999999999999999988877654422 34567899999888999999854 55
Q ss_pred EEE-EEE-ecC-CCcc-cccCCceeeecCCChHHHHHHHHHHHHhCCCcEEEEeEEEc-CCCCeEEEeecCCccccccc-
Q psy10366 130 KAF-QRK-SIS-GNWK-TNTGSAMLEQIPMTDHYKLWIDEVAELFGGLDICALEIIVG-KDGKEHIIEVNDSALSLMGE- 203 (340)
Q Consensus 130 ~A~-~R~-s~~-~~Wk-tNvgga~~e~~~~~ee~~~~a~~aa~a~~GldiaGVDll~~-~dG~~~VlEVN~s~~P~~~g- 203 (340)
+++ .|. +.. .+-+ ...+-+....-.+.+++++++.+++++++--+++.||++.+ ++|++||+|||.. ++-..
T Consensus 300 v~l~~~~~~~~~~~~k~~~~~P~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~dg~~~~iEiN~R--~~g~~~ 377 (554)
T 1w96_A 300 ISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPR--LQVEHP 377 (554)
T ss_dssp EEEEEEEEEEEETTEEEEEEESCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTTCCEEEEEEECS--CCTTTH
T ss_pred EEEeeeeeeeEeeccceeeeCCCcCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEEeeCC--CCccee
Confidence 543 221 110 0100 01110100011123456788888899984338999999998 7888999999965 32221
Q ss_pred -chhHHHHHHHHHHHHHHH
Q psy10366 204 -TQEEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 204 -~~~~~~~~IA~~vi~~i~ 221 (340)
++..++.++.+.+++...
T Consensus 378 ~~~~~~G~dl~~~~~~~a~ 396 (554)
T 1w96_A 378 TTEMVSGVNLPAAQLQIAM 396 (554)
T ss_dssp HHHHHHCCCHHHHHHHHHT
T ss_pred hhhhhcCCCHHHHHHHHHc
Confidence 123567778777776543
No 61
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.62 E-value=9.1e-16 Score=169.56 Aligned_cols=201 Identities=18% Similarity=0.200 Sum_probs=104.9
Q ss_pred HHHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccc--cCCCc-------cc-ccEEEecCC
Q psy10366 10 KNLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITY--YPNFK-------EM-YPVVFKIGH 78 (340)
Q Consensus 10 r~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~--~~~~~-------~~-~PvVvKp~~ 78 (340)
..+...++..|+|++ ++++++.+|.|| ..+.++++++| +|+++... ..... ++ ||+||||..
T Consensus 108 ~~~a~~le~~Gi~~iGp~~~ai~~~~DK----~~~k~~l~~~G---IPvp~~~~~~v~s~eea~~~a~~igyPvVVKp~~ 180 (1165)
T 2qf7_A 108 PEFVDACNKAGIIFIGPKADTMRQLGNK----VAARNLAISVG---VPVVPATEPLPDDMAEVAKMAAAIGYPVMLKASW 180 (1165)
T ss_dssp HHHHHHHHHTTCEESSCCHHHHHHHHSH----HHHHHHHHHTT---CCBC------------------------------
T ss_pred HHHHHHHHHcCCceECCCHHHHHHHCCH----HHHHHHHHHcC---CCCCCeeCcCCCCHHHHHHHHHhcCCCEEEEeCC
Confidence 467888999999986 889999999999 44455689999 68555431 21111 23 899999999
Q ss_pred CCcccceEEecChhhHHHHHHHHHh------hCceEEeecCCCCCCcEEEEEECC---eEEEE-EEEecCCCcccccCCc
Q psy10366 79 AHSGFGKVRVESNQDFQDMAGVVAV------ANTYCTTEPYIDSKFDVHVQKIGS---NYKAF-QRKSISGNWKTNTGSA 148 (340)
Q Consensus 79 Gs~G~Gv~lv~~~~~l~~i~~~l~~------~~~~~~vQefI~~g~DIRv~VIG~---~v~A~-~R~s~~~~WktNvgga 148 (340)
|.+|+|+.+++|.+++......... .+..+++|+||+.++.+.|+++++ +++.+ .|. ...|+.|....
T Consensus 181 g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~gg~EisV~vl~D~~G~vv~l~~r~--~s~~r~~~~~~ 258 (1165)
T 2qf7_A 181 GGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERD--CSVQRRNQKVV 258 (1165)
T ss_dssp ---------------------------------------CCCSSEEEEEEEEEECTTSCEEEEEEEE--EEEEETTEEEE
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcEEEEEEEEcCCCcEEEEEeec--ccceecccceE
Confidence 9999999999999988876654321 124467899999889999999965 36654 442 22344443222
Q ss_pred eeeec-CCCh----HHHHHHHHHHHHhCCCcEEEEeEEEc-CCCCeEEEeecCCccccccc--chhHHHHHHHHHHHHHH
Q psy10366 149 MLEQI-PMTD----HYKLWIDEVAELFGGLDICALEIIVG-KDGKEHIIEVNDSALSLMGE--TQEEDRRFIVDLVIQKM 220 (340)
Q Consensus 149 ~~e~~-~~~e----e~~~~a~~aa~a~~GldiaGVDll~~-~dG~~~VlEVN~s~~P~~~g--~~~~~~~~IA~~vi~~i 220 (340)
...|. .+++ ++.+++.+++++++--+++.||++.+ ++|++|++|||.. ++... .+..++.++++..+...
T Consensus 259 e~~Pa~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~vd~~dg~~~~iEiNpR--~~~~~~vte~~tGiDl~~~~i~~a 336 (1165)
T 2qf7_A 259 ERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNPR--IQVEHTVTEVVTGIDIVKAQIHIL 336 (1165)
T ss_dssp EEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTTEEEEEEEECS--CCTTHHHHHHHHCCCHHHHHHHHH
T ss_pred EecccccCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEECCCCCEEEEEEEcC--CCCCchhhhhhhCCCHHHHHHHHH
Confidence 22222 3444 45678888888884335678999999 8898999999976 55444 23356778888766644
Q ss_pred H
Q psy10366 221 Q 221 (340)
Q Consensus 221 ~ 221 (340)
.
T Consensus 337 ~ 337 (1165)
T 2qf7_A 337 D 337 (1165)
T ss_dssp T
T ss_pred c
Confidence 3
No 62
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.61 E-value=6.5e-15 Score=161.58 Aligned_cols=197 Identities=13% Similarity=0.171 Sum_probs=128.2
Q ss_pred HHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCcc-------c-ccEEEecCCCCc
Q psy10366 11 NLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKE-------M-YPVVFKIGHAHS 81 (340)
Q Consensus 11 ~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~-------~-~PvVvKp~~Gs~ 81 (340)
.++..|+..|+|++ |+++++.+|.|| ..+.++|+++| +|+++.....+.++ + ||+||||..|.+
T Consensus 649 ~la~~Le~~Gi~i~G~~~~ai~~~~DK----~~~~~ll~~~G---Ip~P~~~~~~s~eea~~~~~~ig~PvvVKP~~~~g 721 (1073)
T 1a9x_A 649 KLARALEAAGVPVIGTSPDAIDRAEDR----ERFQHAVERLK---LKQPANATVTAIEMAVEKAKEIGYPLVVRASYVLG 721 (1073)
T ss_dssp TTHHHHHHTTCCBCSSCHHHHHHHHSH----HHHHHHHHHHT---CCCCCEEECCSHHHHHHHHHHHCSSEEEEC-----
T ss_pred HHHHHHHHCCCCeeCCCHHHHHHhhCH----HHHHHHHHHcC---cCCCCceEECCHHHHHHHHHHcCCCEEEEECCCCC
Confidence 45678999999998 999999999999 44556689999 68544333322222 2 899999999999
Q ss_pred ccceEEecChhhHHHHHHHHHh--hCceEEeecCCCCCCcEEEEEE--CCeE--EEEEEEecCCCcccccC-C--ceeee
Q psy10366 82 GFGKVRVESNQDFQDMAGVVAV--ANTYCTTEPYIDSKFDVHVQKI--GSNY--KAFQRKSISGNWKTNTG-S--AMLEQ 152 (340)
Q Consensus 82 G~Gv~lv~~~~~l~~i~~~l~~--~~~~~~vQefI~~g~DIRv~VI--G~~v--~A~~R~s~~~~WktNvg-g--a~~e~ 152 (340)
|+|+.+++|.+++......... ....+++|+||+..+.+.|.++ |+.+ .++++.- -++++. + +...+
T Consensus 722 G~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~g~~E~~V~~l~d~~~v~~~~i~e~~----~~~g~~~gd~~~~~P 797 (1073)
T 1a9x_A 722 GRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHI----EQAGVHSGDSACSLP 797 (1073)
T ss_dssp --CEEEECSHHHHHHHHHHCC--------EEEBCCTTCEEEEEEEEECSSCEEEEEEEEES----SCTTSCGGGCCEEES
T ss_pred CCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEccCCCcEEEEEEEEECCeEEEEeeEEEE----eccCCccCCceEEec
Confidence 9999999999998887764321 1345678999996556666655 4444 2444431 123443 2 22222
Q ss_pred -cCCC----hHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCccccc--ccchhHHHHHHHHHHHHHHH
Q psy10366 153 -IPMT----DHYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLM--GETQEEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 153 -~~~~----ee~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~--~g~~~~~~~~IA~~vi~~i~ 221 (340)
..++ +++++++.+++++++--++++||++.+ +|++||+|||.. |+- .-+...++.++++..++.+.
T Consensus 798 ~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vdf~v~-~~~~~viEvNpR--~~~~~~~~~~~tGi~l~~~~~~~~~ 870 (1073)
T 1a9x_A 798 AYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVK-NNEVYLIEVNPR--AARTVPFVSKATGVPLAKVAARVMA 870 (1073)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC-SSCEEEEEEECS--CCTTHHHHHHHHSCCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEE-CCeEEEEEEECC--CccHHHHHHHHHCcCHHHHHHHHHc
Confidence 2344 456888888999984448999999996 678999999975 432 22345677888888877664
No 63
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.60 E-value=1.8e-14 Score=158.01 Aligned_cols=192 Identities=13% Similarity=0.135 Sum_probs=134.2
Q ss_pred HHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc-ccEEEecCCCCcccce
Q psy10366 15 GFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM-YPVVFKIGHAHSGFGK 85 (340)
Q Consensus 15 ~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~PvVvKp~~Gs~G~Gv 85 (340)
.||..|++++ |+++++..|.|| ..+.++++++| +|+++.....+.. ++ ||+||||..|.+|+|+
T Consensus 107 ~le~~gv~~~G~~~~ai~~~~DK----~~~k~~l~~~G---ipvp~~~~v~~~~ea~~~~~~ig~PvVvKp~~~~Gg~Gv 179 (1073)
T 1a9x_A 107 VLEEFGVTMIGATADAIDKAEDR----RRFDVAMKKIG---LETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGG 179 (1073)
T ss_dssp HHHHHTCEECSSCHHHHHHHHSH----HHHHHHHHHTT---CCCCSEEEESSHHHHHHHHHHHCSSEEEEETTCCTTTTC
T ss_pred HHHHcCCeeeCCCHHHHHHhhCH----HHHHHHHHHCC---cCCCCEEEECCHHHHHHHHHHcCCCEEEEECCCCCCCce
Confidence 5788999999 999999999999 45556689999 6854433332222 12 8999999999999999
Q ss_pred EEecChhhHHHHHHHHHhh--CceEEeecCCCCCCcEEEEEECC---eEE--EEEEEecCCCcccccC-Cceeeec-CCC
Q psy10366 86 VRVESNQDFQDMAGVVAVA--NTYCTTEPYIDSKFDVHVQKIGS---NYK--AFQRKSISGNWKTNTG-SAMLEQI-PMT 156 (340)
Q Consensus 86 ~lv~~~~~l~~i~~~l~~~--~~~~~vQefI~~g~DIRv~VIG~---~v~--A~~R~s~~~~WktNvg-ga~~e~~-~~~ 156 (340)
.+++|.+++.......... ...+++|+||+..+++.|.|+++ +++ +.+.+-....+ +.+ .....|. .++
T Consensus 180 ~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G~~E~~v~v~~d~~g~~v~~~~~e~~dp~~v--~~g~s~~~~Pa~~l~ 257 (1073)
T 1a9x_A 180 GIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGI--HTGDSITVAPAQTLT 257 (1073)
T ss_dssp EEESSHHHHHHHHHHHHHHCTTSCEEEEECCTTSEEEEEEEEECTTCCEEEEEEEEESSCTTS--CGGGSCEEESCCSCC
T ss_pred EEeCCHHHHHHHHHHHHhhCCCCcEEEEEccCCCeEEEEEEEEeCCCCEEEEEEEecccCCcc--ccCcEEEEecCCCCC
Confidence 9999999998887643322 24567899999778999999964 343 33322111111 112 1222333 366
Q ss_pred h----HHHHHHHHHHHHhCCCc--EEEEeEEEcC-CCCeEEEeecCCccccccc--chhHHHHHHHHHHHH
Q psy10366 157 D----HYKLWIDEVAELFGGLD--ICALEIIVGK-DGKEHIIEVNDSALSLMGE--TQEEDRRFIVDLVIQ 218 (340)
Q Consensus 157 e----e~~~~a~~aa~a~~Gld--iaGVDll~~~-dG~~~VlEVN~s~~P~~~g--~~~~~~~~IA~~vi~ 218 (340)
+ ++++++.++++++ |+. +++||++.++ +|+++|+|||.. ++-.. .+..++.+|++..+.
T Consensus 258 ~~~~~~l~~~a~~i~~~l-g~~~G~~~vdf~~~~~~g~~~viEiNpR--~~~ss~l~~~atG~~l~~~~~~ 325 (1073)
T 1a9x_A 258 DKEYQIMRNASMAVLREI-GVETGGSNVQFAVNPKNGRLIVIEMNPR--VSRSSALASKATGFPIAKVAAK 325 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCCSEEEEEEEEECTTTCCEEEEEEESS--CCHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CcccCceEEEEEEECCCCCEEEEEecCC--CCccHHHHHHHhCCCHHHHHHH
Confidence 5 5678888899998 665 9999999997 689999999954 22111 234567777776654
No 64
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.56 E-value=1.3e-14 Score=160.14 Aligned_cols=199 Identities=21% Similarity=0.199 Sum_probs=129.4
Q ss_pred HHHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccc--cCCCc-------cc-ccEEEecCC
Q psy10366 10 KNLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITY--YPNFK-------EM-YPVVFKIGH 78 (340)
Q Consensus 10 r~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~--~~~~~-------~~-~PvVvKp~~ 78 (340)
-.+.+.++..|++++ |+++++.+|.|| ..+.++++++| +|+++..+ ..+.. ++ ||+||||..
T Consensus 92 ~~~a~~le~~Gi~~iGp~~eai~~~~DK----~~~r~ll~~aG---IPvpp~~~~~v~s~eea~~~a~~iGyPvVVKP~~ 164 (1150)
T 3hbl_A 92 EQFARRCAEEGIKFIGPHLEHLDMFGDK----VKARTTAIKAD---LPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATS 164 (1150)
T ss_dssp HHHHHHHHHTTCEESSSCHHHHHHHHSH----HHHHHHHHHTT---CCBCCBCSSCBCSSSTTTTTGGGTCSSEEEECCC
T ss_pred HHHHHHHHHCCCCeeCCCHHHHHHhCCH----HHHHHHHHHcC---cCCCCccccCCCCHHHHHHHHHHcCCCEEEEeCC
Confidence 467888999999998 999999999999 44555689999 68655442 21111 23 999999999
Q ss_pred CCcccceEEecChhhHHHHHHHHHhh------CceEEeecCCCCCCcEEEEEECC---eEEEE-EEEecCCCcccccCCc
Q psy10366 79 AHSGFGKVRVESNQDFQDMAGVVAVA------NTYCTTEPYIDSKFDVHVQKIGS---NYKAF-QRKSISGNWKTNTGSA 148 (340)
Q Consensus 79 Gs~G~Gv~lv~~~~~l~~i~~~l~~~------~~~~~vQefI~~g~DIRv~VIG~---~v~A~-~R~s~~~~WktNvgga 148 (340)
|++|+|+.+++|.+++.......... +..+++|+||+..+.+.|.++++ +++.+ .|.. .-++-+....
T Consensus 165 GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~reieV~vl~d~~G~vv~l~er~~--s~qr~~~k~~ 242 (1150)
T 3hbl_A 165 GGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDC--SVQRRHQKVV 242 (1150)
T ss_dssp -------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSCEEEEEEEEECSSSCEEEEEEEEE--EEESSSCEEE
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCCcEEEEEEEEeCCCCEEEEEeecc--ceeccCceeE
Confidence 99999999999999887766543211 24467899999778999999965 45543 3421 1111111111
Q ss_pred eeeec-CCCh----HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCeEEEeecCCccccccc--chhHHHHHHHHHHHHHH
Q psy10366 149 MLEQI-PMTD----HYKLWIDEVAELFGGLDICALEIIVGKDGKEHIIEVNDSALSLMGE--TQEEDRRFIVDLVIQKM 220 (340)
Q Consensus 149 ~~e~~-~~~e----e~~~~a~~aa~a~~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g--~~~~~~~~IA~~vi~~i 220 (340)
...+. .+++ ++.+++.+++++++--+++.||++.+++ ++|++|||.. ++-+. .+..++.|+.+..+...
T Consensus 243 e~~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~vEflvd~d-~~y~iEINpR--~~g~~~vte~~tGvDlv~~~i~ia 318 (1150)
T 3hbl_A 243 EVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGD-EFFFIEVNPR--VQVEHTITEMVTGIDIVKTQILVA 318 (1150)
T ss_dssp EESSCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETT-EEEEEEEECS--CCTTHHHHHHHHCCCHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECC-eEEEEEEeCC--CCCCcceeehhcCCCHHHHHHHHH
Confidence 11122 2333 5677888888888433556799999987 7999999976 54332 44567888888777654
No 65
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.56 E-value=5.9e-15 Score=163.75 Aligned_cols=200 Identities=16% Similarity=0.194 Sum_probs=97.9
Q ss_pred HHHHHHHHhCCCccc-CChhHHHHcCCchHHHHHHHHHHHHcCCCCCCccccccc-CCC-------ccc-ccEEEecCCC
Q psy10366 10 KNLLLGFNIGGIPSI-NTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYY-PNF-------KEM-YPVVFKIGHA 79 (340)
Q Consensus 10 r~vl~~le~~Gvpvi-Ns~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~-~~~-------~~~-~PvVvKp~~G 79 (340)
..+...++..|++++ ++++++.+|.|| ..+.++++++| +|++|.+.. .+. +++ ||+||||..|
T Consensus 118 ~~~a~~le~~Gi~~iGps~eai~~~~DK----~~ak~ll~~aG---IPvpp~~~~v~s~eea~~~a~~iGyPvVVKP~~G 190 (1236)
T 3va7_A 118 ADFSDRCSQENIVFVGPSGDAIRKLGLK----HSAREIAERAK---VPLVPGSGLIKDAKEAKEVAKKLEYPVMVKSTAG 190 (1236)
T ss_dssp HHHHHHHHTTTCEESSCCHHHHHHHHST----THHHHHHHHTT---CCCCC-----------------------------
T ss_pred HHHHHHHHHCCCCeeCCCHHHHHHhcCH----HHHHHHHHHcC---CCCCCeeEecCCHHHHHHHHHHcCCCEEEEeCCC
Confidence 467788999999997 999999999999 44555689999 686564322 111 123 9999999999
Q ss_pred CcccceEEecChhhHHHHHHHHHh------hCceEEeecCCCCCCcEEEEEECC---eEEEE-EEEecCCCcccccCCce
Q psy10366 80 HSGFGKVRVESNQDFQDMAGVVAV------ANTYCTTEPYIDSKFDVHVQKIGS---NYKAF-QRKSISGNWKTNTGSAM 149 (340)
Q Consensus 80 s~G~Gv~lv~~~~~l~~i~~~l~~------~~~~~~vQefI~~g~DIRv~VIG~---~v~A~-~R~s~~~~WktNvgga~ 149 (340)
.+|+|+.+++|.+++....+.... ...-+++|+||+.++++.|.++++ +++++ .|.. .-.+-|.....
T Consensus 191 gGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G~rEisV~vl~Dg~g~vv~l~~rd~--s~qr~~~k~~e 268 (1236)
T 3va7_A 191 GGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARHVEIQMMGDGFGKAIAIGERDC--SLQRRNQKVIE 268 (1236)
T ss_dssp ------------------------------------------CCEEEEEEEEEESSSCEEEEEEEEE--EEEETTEEEEE
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCCCeEEEEEEEecCCceEEEEeeeee--eeeecCcceEE
Confidence 999999999999998877665321 134467899999889999999964 35443 2321 01111111111
Q ss_pred eeecC-CCh----HHHHHHHHHHHHhCCC-cEEEEeEEEcCC-CCeEEEeecCCcccc--cccchhHHHHHHHHHHHHHH
Q psy10366 150 LEQIP-MTD----HYKLWIDEVAELFGGL-DICALEIIVGKD-GKEHIIEVNDSALSL--MGETQEEDRRFIVDLVIQKM 220 (340)
Q Consensus 150 ~e~~~-~~e----e~~~~a~~aa~a~~Gl-diaGVDll~~~d-G~~~VlEVN~s~~P~--~~g~~~~~~~~IA~~vi~~i 220 (340)
..+.+ +++ ++.+++.++++++ |+ +++.||++.+++ |++|++|||.. +. ..-.+..++.|+++.++...
T Consensus 269 ~~Pa~~l~~~~~~~l~~~a~~~~~al-g~~G~~~VEfivd~d~g~~y~iEINpR--l~g~~~~te~vtGvDlv~~~l~~a 345 (1236)
T 3va7_A 269 ETPAPNLPEATRAKMRAASERLGSLL-KYKCAGTVEFIYDEQRDEFYFLEVNAR--LQVEHPITEMVTGLDLVEWMLRIA 345 (1236)
T ss_dssp EESCSSCCHHHHHHHHHHHHHHHHHT-TCEEEEEEEEEEETTTTEEEEEEEECS--CCTTHHHHHHHHCCCHHHHHHHHH
T ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHc-CCcceEEEEEEEECCCCcEEEEEEECC--CCCccHHHHHHHCCCHHHHHHHHH
Confidence 12222 443 5567788888888 55 589999999974 88999999965 32 22234457788888777655
Q ss_pred H
Q psy10366 221 Q 221 (340)
Q Consensus 221 ~ 221 (340)
.
T Consensus 346 ~ 346 (1236)
T 3va7_A 346 A 346 (1236)
T ss_dssp T
T ss_pred C
Confidence 4
No 66
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=99.44 E-value=1.5e-12 Score=127.34 Aligned_cols=195 Identities=14% Similarity=0.112 Sum_probs=127.2
Q ss_pred HHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCccc-ccEEEecCCCCcccceEEecChhhH
Q psy10366 16 FNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM-YPVVFKIGHAHSGFGKVRVESNQDF 94 (340)
Q Consensus 16 le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~~-~PvVvKp~~Gs~G~Gv~lv~~~~~l 94 (340)
++..|+|++-+..++....||.+ ..++|+++| +| +|.+ +.+..++ +|+||||..++.|+|+.+++|.+++
T Consensus 105 ~~~~g~~v~g~~~a~~~e~~k~~----~k~~l~~~G---Ip-tp~~-~~~~~e~~~PvVVK~~~~a~GkGv~v~~s~ee~ 175 (361)
T 2r7k_A 105 ENSFLVPMFGNRRILRWESERSL----EGKLLREAG---LR-VPKK-YESPEDIDGTVIVKFPGARGGRGYFIASSTEEF 175 (361)
T ss_dssp HHTCCSCBBSCGGGGGTTTCHHH----HHHHHHHTT---CC-CCCE-ESSGGGCCSCEEEECSCCCC---EEEESSHHHH
T ss_pred HHHcCCCcCCCHHHHHHhhhHHH----HHHHHHHcC---cC-CCCE-eCCHHHcCCCEEEeeCCCCCCCCEEEECCHHHH
Confidence 34899999999999999999943 335699999 68 4543 4344455 9999999999999999999999998
Q ss_pred HHHHHHHHhh-------CceEEeecCCCC-CCcEEEE--EECCeE--EEEEEE--ec-CCCcc----c------c--cC-
Q psy10366 95 QDMAGVVAVA-------NTYCTTEPYIDS-KFDVHVQ--KIGSNY--KAFQRK--SI-SGNWK----T------N--TG- 146 (340)
Q Consensus 95 ~~i~~~l~~~-------~~~~~vQefI~~-g~DIRv~--VIG~~v--~A~~R~--s~-~~~Wk----t------N--vg- 146 (340)
....+.+... ...+++||||+. -++..+| ++++++ .++-+| .. .|..+ . + ..
T Consensus 176 ~~a~~~~~~~~~~~~~~~~~viIEEfl~G~e~s~~~f~~~~~~~~e~~~id~r~~~~~dgi~~~~~~~~~~~~~~p~~v~ 255 (361)
T 2r7k_A 176 YKKAEDLKKRGILTDEDIANAHIEEYVVGTNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAKDQLEMNINPSYVI 255 (361)
T ss_dssp HHHHHHHHHTTSCCHHHHHHCEEEECCCSEEEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSCHHHHHTCCCCCCEEE
T ss_pred HHHHHHHHhccccccCCCCeEEEEeccceEEeeEEEEecccCCeeEEEEecceEEeecccceecchhhhhcccCCCceEE
Confidence 8776543211 134678999993 2232222 236654 344433 10 01111 0 0 00
Q ss_pred CceeeecCCC----hHHHHHHHHHHHHh------CCCcEEEEeEEEcCCCCeEEEeecCCccccc------ccch-----
Q psy10366 147 SAMLEQIPMT----DHYKLWIDEVAELF------GGLDICALEIIVGKDGKEHIIEVNDSALSLM------GETQ----- 205 (340)
Q Consensus 147 ga~~e~~~~~----ee~~~~a~~aa~a~------~GldiaGVDll~~~dG~~~VlEVN~s~~P~~------~g~~----- 205 (340)
.+.. |..++ ++..+++.++++++ +....++||++.++||+.+|+|||.- |+= .|..
T Consensus 256 ~G~~-Pa~l~~~~~~~a~~~a~~v~~al~~~~~~~~~G~~~vE~fvt~dg~i~V~EIapR--~gGg~~~~~~g~p~~~l~ 332 (361)
T 2r7k_A 256 TGNI-PVVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNENLELVVFEMSAR--VDGGTNSFMNGGPYSFLY 332 (361)
T ss_dssp EEEE-ECCCCGGGHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECTTSCEEEEEEESS--BCGGGGGGTTCCTTHHHH
T ss_pred ecCc-CCcCCHHHHHHHHHHHHHHHHHHHhhccCCccceEEEEEEEcCCCCEEEEEEcCC--CCCCcccccCCCCchhee
Confidence 0111 44444 56678888888888 77899999999999999999999975 321 1211
Q ss_pred ----hHHHHHHHHHHHHHHHh
Q psy10366 206 ----EEDRRFIVDLVIQKMQV 222 (340)
Q Consensus 206 ----~~~~~~IA~~vi~~i~~ 222 (340)
-.+++.||..|-.-+++
T Consensus 333 ~~~~~~~g~r~~~e~~~~~~~ 353 (361)
T 2r7k_A 333 NGEPLSMGQRIAREIKMALQL 353 (361)
T ss_dssp HSSCCCHHHHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHh
Confidence 15799999999666554
No 67
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=99.42 E-value=4.3e-13 Score=129.44 Aligned_cols=190 Identities=14% Similarity=0.043 Sum_probs=113.4
Q ss_pred HHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCccc-ccEEEecCCCCcccceEEecCh
Q psy10366 13 LLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM-YPVVFKIGHAHSGFGKVRVESN 91 (340)
Q Consensus 13 l~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~~-~PvVvKp~~Gs~G~Gv~lv~~~ 91 (340)
+..+|..|+|++-+.+++..+.|| ....++|+++| || +|.++.+..-++ ||+||||..|++|+|+.+++|
T Consensus 76 l~~le~~~~p~~p~~~~l~~~~dr----~~~~~~l~~~G---ip-~P~~~~~ee~~i~~PviVKp~~g~ggkG~~~v~~- 146 (320)
T 2pbz_A 76 IEAIEKAKARFFGNRRFLKWETTF----ELQDKALEGAG---IP-RVEVVEPEDAKPDELYFVRIEGPRGGSGHFIVEG- 146 (320)
T ss_dssp HHHHHTCCSCCBSCSSGGGGGSCH----HHHHHHHHHHT---CC-BCCBCCSCCCCSSCCEEEECC------------C-
T ss_pred HHHHHHcCCCcCCCHHHHHHHHhH----HHHHHHHHHCC---cC-CCCeeCHhHcCcCCcEEEEECCCCCCCCEEEECh-
Confidence 456789999999999999999999 33346799999 68 455553211134 999999999999999999999
Q ss_pred hhHHHHHHHHHhhCceEEeecCCCC-CCcEEEE--EECCeEEE--EEEEe--cCCCccc-c-----c-CCceeeecC---
Q psy10366 92 QDFQDMAGVVAVANTYCTTEPYIDS-KFDVHVQ--KIGSNYKA--FQRKS--ISGNWKT-N-----T-GSAMLEQIP--- 154 (340)
Q Consensus 92 ~~l~~i~~~l~~~~~~~~vQefI~~-g~DIRv~--VIG~~v~A--~~R~s--~~~~Wkt-N-----v-gga~~e~~~--- 154 (340)
++++...+.+. ..+++||||+. .++.-+| ++.|++.+ +.+|- ..+..+. + + .|.. |..
T Consensus 147 eel~~~~~~~~---~~~IiEEfI~g~~~~~~~f~~~~~g~~e~~~~~~r~e~~~g~~~~p~~~~~~~~~G~~--P~~~~~ 221 (320)
T 2pbz_A 147 SELEERLSTLE---EPYRVERFIPGVYLYVHFFYSPILERLELLGVDERVLIADGNARWPVKPLPYTIVGNR--AIALRE 221 (320)
T ss_dssp EECSCCCC-------CCEEEECCCSCEEEEEEEEETTTTEEEEEEEEEEEETTCSSSSSCCSCCCCCEEEEE--ECEECG
T ss_pred HHHHHHHHhcC---CCEEEEeeeceEecceeEEeccccCceeEEEecceEEEECCeeecccCCCceeeecCC--CCccCH
Confidence 88765432221 34568999993 2232222 24666633 33332 2232211 1 1 1111 333
Q ss_pred -CChHHHHHHHHHHHHh------CCCcEEEEeEEEcCCCCeEEEeecCCccccccc----ch---------hHHHHHHHH
Q psy10366 155 -MTDHYKLWIDEVAELF------GGLDICALEIIVGKDGKEHIIEVNDSALSLMGE----TQ---------EEDRRFIVD 214 (340)
Q Consensus 155 -~~ee~~~~a~~aa~a~------~GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g----~~---------~~~~~~IA~ 214 (340)
+.++..+++.++++++ +.....+|| .++||+++|+|||.- |+ +| .. -.+++.||.
T Consensus 222 ~~~~~a~~~a~~i~~~L~~l~~~g~~G~~~vE--~~~dg~~~v~EIapR--~~-GGt~~~~~y~~~~~~~~~~~g~r~~~ 296 (320)
T 2pbz_A 222 SLLPQLYDYGLAFVRTMRELEPPGVIGPFALH--FAYDGSFKAIGIASR--ID-GGSNADHWYSELYWGERLSMGRRIAR 296 (320)
T ss_dssp GGHHHHHHHHHHHHHHHHHHSTTCCCSEEEEE--EECSSSCEEEEEESS--BC-SGGGSCCCCHHHHSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCceeeEEEE--EcCCCcEEEEEecCC--CC-CCCCccCCceeeeecCCCCHHHHHHH
Confidence 3356778888888887 788999999 467888999999975 22 22 11 157999999
Q ss_pred HHHHHHH
Q psy10366 215 LVIQKMQ 221 (340)
Q Consensus 215 ~vi~~i~ 221 (340)
.|-.-++
T Consensus 297 e~~~~~~ 303 (320)
T 2pbz_A 297 ELRLAEE 303 (320)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9955554
No 68
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=3.9e-12 Score=101.16 Aligned_cols=91 Identities=19% Similarity=0.150 Sum_probs=66.7
Q ss_pred HHHHcCCchHHHHHHHHHHHHcCCCCCCccccc--ccCCCc-------cc-ccEEEecCCCCcccceEEecChhhHHHHH
Q psy10366 29 GVYNFQDKPWVFAHLLQLQRKLGKENFPLIDIT--YYPNFK-------EM-YPVVFKIGHAHSGFGKVRVESNQDFQDMA 98 (340)
Q Consensus 29 aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t--~~~~~~-------~~-~PvVvKp~~Gs~G~Gv~lv~~~~~l~~i~ 98 (340)
|+.+|.||. .+.++|+++| +|+++.. ...+.. ++ ||+|+||..|++|.|+.+++|.+++....
T Consensus 2 a~~~~~dK~----~~~~~l~~~g---ip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~~~~~~gv~~v~~~~el~~~~ 74 (108)
T 2cqy_A 2 SSGSSGDKI----ESKLLAKKAE---VNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGF 74 (108)
T ss_dssp CCCCCCCCC----CSTTCCCSSC---CCCCSCCCSCBSSHHHHHHHHHHHCSSEEEEETTSCCTTTCEEESSHHHHHHHH
T ss_pred chhhhcCHH----HHHHHHHHcC---CCCCCCcccccCCHHHHHHHHHhcCCCEEEEECCCCCCccEEEeCCHHHHHHHH
Confidence 456799994 4444588999 6854432 222222 23 89999999999999999999999988877
Q ss_pred HHHH-----hh-CceEEeecCCCCCCcEEEEEEC
Q psy10366 99 GVVA-----VA-NTYCTTEPYIDSKFDVHVQKIG 126 (340)
Q Consensus 99 ~~l~-----~~-~~~~~vQefI~~g~DIRv~VIG 126 (340)
..+. .. ...+++|+||+..+++.|.|+|
T Consensus 75 ~~~~~~~~~~~~~~~~lvee~i~g~~E~~v~v~g 108 (108)
T 2cqy_A 75 RLSSQEAASSFGDDRLLIEKFIDNPRHISGPSSG 108 (108)
T ss_dssp HHHHHHHHHHTSSCCEEEEECCSSSSCCCSCCCC
T ss_pred HHHHHHHHhhcCCCcEEEeeccCCCcEEEEEecC
Confidence 6542 11 3456789999977899998887
No 69
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=98.85 E-value=1.7e-09 Score=98.84 Aligned_cols=152 Identities=11% Similarity=0.115 Sum_probs=91.1
Q ss_pred cCCchHHHHHHHHHHHHcCCCCCCcccccccCCCc-------cc-ccEEEecCCC-----CcccceEE-ecChhhHHHHH
Q psy10366 33 FQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFK-------EM-YPVVFKIGHA-----HSGFGKVR-VESNQDFQDMA 98 (340)
Q Consensus 33 ~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~PvVvKp~~G-----s~G~Gv~l-v~~~~~l~~i~ 98 (340)
.-|| ..+.++|+++| ||+++........ ++ ||+||||..+ +.|.||.+ ++|.+++....
T Consensus 19 ~l~k----~~~k~ll~~~G---Ip~p~~~~~~~~~ea~~~a~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~ 91 (238)
T 1wr2_A 19 AMVE----YEAKQVLKAYG---LPVPEEKLAKTLDEALEYAKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKW 91 (238)
T ss_dssp EECH----HHHHHHHHTTT---CCCCCCEEESSHHHHHHHHHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHH
T ss_pred CCCH----HHHHHHHHHcC---cCCCCeEEeCCHHHHHHHHHHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHHHHH
Confidence 3488 55666799999 6854433222221 23 9999999988 77889998 79999988776
Q ss_pred HHHHhh---------CceEEeecCCCCCCcEEEEEECCeE-EEEEEEecCCCcccccCCceeeecCCChHHHHHH----H
Q psy10366 99 GVVAVA---------NTYCTTEPYIDSKFDVHVQKIGSNY-KAFQRKSISGNWKTNTGSAMLEQIPMTDHYKLWI----D 164 (340)
Q Consensus 99 ~~l~~~---------~~~~~vQefI~~g~DIRv~VIG~~v-~A~~R~s~~~~WktNvgga~~e~~~~~ee~~~~a----~ 164 (340)
+.+... ...+++|+||+.++.+.|.+++++. .-..--+.+|-+--.++.......+++++...-+ .
T Consensus 92 ~~~~~~~~~~~~~~~~~~vlVEe~i~~g~E~~v~v~~d~~~g~v~~~~~Gg~~iE~~~d~~~~~~Pl~~~~~~~~~~~~~ 171 (238)
T 1wr2_A 92 EEIHENAKKYRPDAEILGVLVAPMLKPGREVIIGVTEDPQFGHAIMFGLGGIFVEILKDVTFRLVPITEKDARKMIQEIK 171 (238)
T ss_dssp HHHHHHHHHHCTTCCCCEEEEEECCCCCEEEEEEEEEETTTEEEEEEEECSTTHHHHCCCEEEESSCCHHHHHHHHHTST
T ss_pred HHHHHhhhhhCCCCccceEEEEECCCCCeEEEEEEEeCCCCCcEEEEecCCceeeeecceeeecCCCCHHHHHHHHHHHH
Confidence 654321 1467899999989999999997762 2111112233332222322333345766553322 2
Q ss_pred HHHHHhCCCcEEE---EeE-------------EEcCCCCeEEEeec
Q psy10366 165 EVAELFGGLDICA---LEI-------------IVGKDGKEHIIEVN 194 (340)
Q Consensus 165 ~aa~a~~GldiaG---VDl-------------l~~~dG~~~VlEVN 194 (340)
++.+++ ++-| +|+ +.+.++..+.+|+|
T Consensus 172 ~~~~~~---g~~G~~~~d~~~l~~~l~~l~~~~~~~~~~~~~lEIN 214 (238)
T 1wr2_A 172 AYPILA---GARGEEPADIDAIVDMLLKVSKLVDDLKDYIKEMDLN 214 (238)
T ss_dssp THHHHH---CC--CCCBCHHHHHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred HHHHhc---CCCCCChhhHHHHHHHHHHHHHHHHcCCCCeEEEecc
Confidence 233444 3455 773 22334338999999
No 70
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=98.51 E-value=3.5e-07 Score=90.20 Aligned_cols=146 Identities=17% Similarity=0.242 Sum_probs=81.5
Q ss_pred ccEEEecCCCCcccceEEecChhhHHHHHHHHHhhCceEEeecCCC-C--------CCcEEEEEECC---eE-E---EEE
Q psy10366 70 YPVVFKIGHAHSGFGKVRVESNQDFQDMAGVVAVANTYCTTEPYID-S--------KFDVHVQKIGS---NY-K---AFQ 133 (340)
Q Consensus 70 ~PvVvKp~~Gs~G~Gv~lv~~~~~l~~i~~~l~~~~~~~~vQefI~-~--------g~DIRv~VIG~---~v-~---A~~ 133 (340)
.+.|+||..|++|+|+.++++.+++..+.+. ....| ++|+||+ + ++|||++|+=. ++ + ++.
T Consensus 148 ~~wI~KP~~~srG~GI~l~~~~~~i~~~~~~--~~~~~-VvQkYI~~PlLi~~~grKFDlR~Yvlvts~l~vy~y~~g~~ 224 (380)
T 3tig_A 148 NVWIAKSSSGAKGEGILISSDATELLDFIDN--QGQVH-VIQKYLESPLLLEPGHRKFDIRSWVLVDNQYNIYLYREGVL 224 (380)
T ss_dssp CCEEEEESCC----CCBCCSCSHHHHHHHHH--HTSCE-EEEECCSSBCCBTTTTBCEEEEEEEEECTTCCEEECSCCEE
T ss_pred CeEEEeCCccCCCCCEEEeCCHHHHHHHHhc--cCCcE-EEEecccCceeecCCCceeEEEEEEEEcCCCEEEEEcCCEE
Confidence 4799999999999999999999987765542 22344 5799996 2 46999998822 22 1 244
Q ss_pred EEec----CCCcc------cccC-Cc-------eee---e-------------c------CCChHHHHHHHHHHH----H
Q psy10366 134 RKSI----SGNWK------TNTG-SA-------MLE---Q-------------I------PMTDHYKLWIDEVAE----L 169 (340)
Q Consensus 134 R~s~----~~~Wk------tNvg-ga-------~~e---~-------------~------~~~ee~~~~a~~aa~----a 169 (340)
|-+. ..++. ||.+ .- ..+ . . .+-+.+++++..+-. .
T Consensus 225 Rfa~~~y~~~~~~~~~~HLTN~~iqk~~~~~y~~~~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~a~~~~ 304 (380)
T 3tig_A 225 RTSSEPYSDTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPA 304 (380)
T ss_dssp EECC----------------------------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCcCccchhhhhhhccccccccccccccccccCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5431 11221 4432 00 000 0 0 111233444433322 2
Q ss_pred hC-------CCcEEEEeEEEcCCCCeEEEeecCCcccccccchhHHHHHHHHHHHHHHHhhcCC
Q psy10366 170 FG-------GLDICALEIIVGKDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQVSVLV 226 (340)
Q Consensus 170 ~~-------GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~vi~~i~~~~~~ 226 (340)
+. ..++.|+|+|.+.+++..++|||.+ |.+.- .-|.+++-+-++..+.+
T Consensus 305 i~~~~~~~~~FEl~G~D~lid~~l~~wllEVN~~--P~~~q------~~i~~l~~~~~~iavdp 360 (380)
T 3tig_A 305 ISTKYLPYHSFQLFGFDFMVDKNLKVWLIEVNGA--PACAQ------KLYAELCKGIVDLAISS 360 (380)
T ss_dssp HCCTTSSSEECEEEEEEEEEBTTCCEEEEEEESS--CCCCT------TTHHHHHHHHHHHTTTT
T ss_pred hhhcccCCceEEEEeEEEEEcCCCcEEEEEEeCC--CCccH------HhHHHHHHHHHHHhccc
Confidence 21 2589999999999999999999998 99852 24444444444444443
No 71
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=98.23 E-value=6e-07 Score=93.54 Aligned_cols=125 Identities=16% Similarity=0.078 Sum_probs=84.7
Q ss_pred HHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCccc--ccEEEecCCCCcccceEEe
Q psy10366 11 NLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM--YPVVFKIGHAHSGFGKVRV 88 (340)
Q Consensus 11 ~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~~--~PvVvKp~~Gs~G~Gv~lv 88 (340)
.++..|+..++++||++.++. ..|| +.|..|...+. .-|....|++....++ ...|+||++|..|.||.++
T Consensus 474 ~ll~~l~~~~v~iieP~~~~l-lsNK----ailalLw~l~p--~hp~LLpT~f~~~~~l~~~~yV~KPi~gReG~nV~i~ 546 (619)
T 2io8_A 474 RLIDVLLRPEVLVFEPLWTVI-PGNK----AILPILWSLFP--HHRYLLDTDFTVNDELVKTGYAVKPIAGRCGSNIDLV 546 (619)
T ss_dssp CHHHHHTCTTCEEESCGGGGT-TTST----THHHHHHHHST--TCTTCCCEESSCCHHHHHHCEEEEETTCCTTTTCEEE
T ss_pred HHHHHHHhCCCEEECHHHHHH-hhhH----HHHHHHHHhCC--CCCCCCCeeecCCcccccCCEEEccCCCCCCCCEEEE
Confidence 488889999999999999987 9999 33333333221 2344445655433223 5799999999999999999
Q ss_pred cChhh-HHHHHHHHHhhCceEEeecCCC-CCCc-----EEEEEECCeEEE-EEEEecCCCcccccC
Q psy10366 89 ESNQD-FQDMAGVVAVANTYCTTEPYID-SKFD-----VHVQKIGSNYKA-FQRKSISGNWKTNTG 146 (340)
Q Consensus 89 ~~~~~-l~~i~~~l~~~~~~~~vQefI~-~g~D-----IRv~VIG~~v~A-~~R~s~~~~WktNvg 146 (340)
+..++ ++...... ..+.+++ |+|+. +.+| |.+++|||++.+ +.|.+ .+|.|+-.
T Consensus 547 ~~~~~~~~~~~~~y-~~~~~Iy-Qe~~~lp~~d~~~~~iG~f~vgg~~aG~~~R~~--~~~It~~~ 608 (619)
T 2io8_A 547 SHHEEVLDKTSGKF-AEQKNIY-QQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGD--ESLVIKKE 608 (619)
T ss_dssp CTTSCEEEECCCTT-TTSCEEE-EECCCCCEETTEEEEEEEEEETTEEEEEEEEEE--SSSSCCTT
T ss_pred eCCChhHhhccccc-cCCCeEE-EEecCCCCcCCcceEEEEEEECCEEEEEEEecC--CCCcCCCC
Confidence 86222 11111111 1245665 99999 7889 999999999865 66753 56888743
No 72
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=97.52 E-value=9.4e-05 Score=74.82 Aligned_cols=133 Identities=20% Similarity=0.298 Sum_probs=85.5
Q ss_pred HHHHHHHHhCCCcccCChhHHHHcCCchHHHHHHHHHHHH-cCCCC--CCcccccccCCCc-c-------cccEEEecCC
Q psy10366 10 KNLLLGFNIGGIPSINTLQGVYNFQDKPWVFAHLLQLQRK-LGKEN--FPLIDITYYPNFK-E-------MYPVVFKIGH 78 (340)
Q Consensus 10 r~vl~~le~~GvpviNs~~aI~~~~DK~~~~~~l~~ll~~-~G~~~--~P~~~~t~~~~~~-~-------~~PvVvKp~~ 78 (340)
-.++.+.+..+|.++|.+.+- ...||. .|+.+-.+.+. .| ++ +|.+| ||.+... + +-.+||||.+
T Consensus 296 ~gLl~A~r~G~V~i~Na~gsg-v~~dKa-l~a~Lp~l~~~~lg-Ee~il~~Vp-T~~c~~~~~~~~vl~~l~~lViKp~~ 371 (474)
T 3n6x_A 296 PGLLSVYRNGGVTLANAVGTG-VADDKD-TYIYVPEMIRFYLG-EEPILSNVP-TYQLSKADDLKYVLDNLAELVVKEVQ 371 (474)
T ss_dssp TTHHHHHHTTSCEEESCTTTH-HHHSTT-TGGGHHHHHHHHHC-SCCSSEECC-CEETTSHHHHHHHHHSGGGEEEEECC
T ss_pred HHHHHHHHcCCEEEeCCCchh-hhcCcH-HHHHhHHHHHHhCC-HhhhccCCC-ceecCCHHHHHHHHhchhheEEEecC
Confidence 469999999999999999996 899994 34444443322 22 22 33334 3333221 1 1579999999
Q ss_pred CCcccceEE--ecChhhHHHHHHHHHhhCceEEeecCCCC--------C------CcEEEEEECCe-E----EEEEEEec
Q psy10366 79 AHSGFGKVR--VESNQDFQDMAGVVAVANTYCTTEPYIDS--------K------FDVHVQKIGSN-Y----KAFQRKSI 137 (340)
Q Consensus 79 Gs~G~Gv~l--v~~~~~l~~i~~~l~~~~~~~~vQefI~~--------g------~DIRv~VIG~~-v----~A~~R~s~ 137 (340)
|++|.|+.. --+.++++.+.+.+......++.||+|.. + .|+|+|++.++ + .++-|.+.
T Consensus 372 g~gg~gv~iG~~~s~~e~~~~~~~i~~~p~~yIaQe~v~ls~~P~~~~~~~~~r~~dlR~F~~~g~~~~v~pGgltRva~ 451 (474)
T 3n6x_A 372 GSGGYGMLVGPAASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSGKTVSLVPGALCRVAL 451 (474)
T ss_dssp CE-----EEGGGCCHHHHHHHHHHHHHSGGGEEEEECCCCCEEEEEETTEEEEEEEEEECEEEESSSEEECSCCEEEEEC
T ss_pred CCCCCceEECCcCCHHHHHHHHHHHHhCCCCEEEeeccCCcccceeeCCceeeeeEEEEEEEEcCCceEEecceEEEEec
Confidence 999999987 45666788877766544333457999983 1 59999999444 3 35888764
Q ss_pred -CCCcccccC
Q psy10366 138 -SGNWKTNTG 146 (340)
Q Consensus 138 -~~~WktNvg 146 (340)
.|....|..
T Consensus 452 ~~~~~vvn~s 461 (474)
T 3n6x_A 452 REGSLVVNSS 461 (474)
T ss_dssp STTCCCCSTT
T ss_pred CCCCceEECC
Confidence 567888874
No 73
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=97.28 E-value=0.00024 Score=70.20 Aligned_cols=84 Identities=10% Similarity=0.015 Sum_probs=58.5
Q ss_pred HHHHHHHHcCCCCCCcccccccCCCc-------cc-c-cEEEec--CCCCcccc---------eEEecChhhHHHHHHHH
Q psy10366 42 HLLQLQRKLGKENFPLIDITYYPNFK-------EM-Y-PVVFKI--GHAHSGFG---------KVRVESNQDFQDMAGVV 101 (340)
Q Consensus 42 ~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~-PvVvKp--~~Gs~G~G---------v~lv~~~~~l~~i~~~l 101 (340)
+..++|+++| +|+++........ ++ | |+|||| .+|..|+| |.+++|.+++....+.+
T Consensus 7 ~aK~lL~~~G---Ipvp~~~~~~s~~ea~~~a~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~~~~ 83 (395)
T 2fp4_B 7 QSKKLMSDNG---VKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQM 83 (395)
T ss_dssp HHHHHHHHTT---CCCCCEEEESSHHHHHHHHHHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHHHTT
T ss_pred HHHHHHHHCC---cCCCCeEEECCHHHHHHHHHHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHHHHH
Confidence 4456799999 6855543332222 23 7 899999 56666665 88999999988877644
Q ss_pred Hhh----------C---ceEEeecCCCCCCcEEEEEECCe
Q psy10366 102 AVA----------N---TYCTTEPYIDSKFDVHVQKIGSN 128 (340)
Q Consensus 102 ~~~----------~---~~~~vQefI~~g~DIRv~VIG~~ 128 (340)
... + .-+++|+|++.++.+-+.++.++
T Consensus 84 l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~ 123 (395)
T 2fp4_B 84 IGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDR 123 (395)
T ss_dssp TTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEET
T ss_pred hhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEcc
Confidence 211 1 24789999998888888888665
No 74
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=97.21 E-value=0.00031 Score=69.19 Aligned_cols=85 Identities=16% Similarity=0.051 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCCCCCCcccccccCCCc-------cc-cc-EEEecCCCCccc----ceEEecChhhHHHHHHHHHhh---
Q psy10366 41 AHLLQLQRKLGKENFPLIDITYYPNFK-------EM-YP-VVFKIGHAHSGF----GKVRVESNQDFQDMAGVVAVA--- 104 (340)
Q Consensus 41 ~~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~P-vVvKp~~Gs~G~----Gv~lv~~~~~l~~i~~~l~~~--- 104 (340)
.+..++|+++| +|+++........ ++ || +||||..+.+|+ ||.+++|.+++....+.+...
T Consensus 6 ~~aK~lL~~~G---Ipvp~~~~~~s~eea~~aa~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~~~ 82 (388)
T 2nu8_B 6 YQAKQLFARYG---LPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLV 82 (388)
T ss_dssp HHHHHHHHHTT---CCCCCEEEESSHHHHHHHHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHCC---cCCCCeeEECCHHHHHHHHHHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHHHHHhhhhhh
Confidence 34556799999 6855543332222 23 89 999998765544 999999999988877654321
Q ss_pred ----------CceEEeecCCCCCCcEEEEEECCe
Q psy10366 105 ----------NTYCTTEPYIDSKFDVHVQKIGSN 128 (340)
Q Consensus 105 ----------~~~~~vQefI~~g~DIRv~VIG~~ 128 (340)
...+++|+|++.++.+-|.++.++
T Consensus 83 t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~ 116 (388)
T 2nu8_B 83 TYQTDANGQPVNQILVEAATDIAKELYLGAVVDR 116 (388)
T ss_dssp CTTSCTTCEECCCEEEEECCCEEEEEEEEEEEET
T ss_pred ccccCCCCcccceEEEEEccccCCcEEEEEEEec
Confidence 124789999998888888888665
No 75
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=97.15 E-value=0.00041 Score=68.53 Aligned_cols=85 Identities=14% Similarity=0.035 Sum_probs=60.0
Q ss_pred HHHHHHHHcCCCCCCcccccccCCCc-------cc-ccEEEecCCCCccc----ceEEecChhhHHHHHHHHHhh-----
Q psy10366 42 HLLQLQRKLGKENFPLIDITYYPNFK-------EM-YPVVFKIGHAHSGF----GKVRVESNQDFQDMAGVVAVA----- 104 (340)
Q Consensus 42 ~l~~ll~~~G~~~~P~~~~t~~~~~~-------~~-~PvVvKp~~Gs~G~----Gv~lv~~~~~l~~i~~~l~~~----- 104 (340)
+..++|+++| ||+++.......+ ++ ||+|+|+....+|+ ||.+++|.+++....+.+...
T Consensus 7 ~aK~lL~~~G---Ipvp~~~~~~s~eea~~aa~~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g~ 83 (397)
T 3ufx_B 7 QAKEILARYG---VPVPPGKVAYTPEEAKRIAEEFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNIKGL 83 (397)
T ss_dssp HHHHHHHHTT---CCCCCEEEESSHHHHHHHHHHHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred HHHHHHHHCC---CCCCCeEEECCHHHHHHHHHHcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhccCC
Confidence 3456799999 6854443332222 23 99999998754454 999999999888877654321
Q ss_pred -CceEEeecCCCCCCcEEEEEECCeE
Q psy10366 105 -NTYCTTEPYIDSKFDVHVQKIGSNY 129 (340)
Q Consensus 105 -~~~~~vQefI~~g~DIRv~VIG~~v 129 (340)
...+++|||++.++.+-+.++.++.
T Consensus 84 ~~~~vlVEe~v~~g~El~vgv~~D~~ 109 (397)
T 3ufx_B 84 TVKKVLVAEAVDIAKEYYAGLILDRA 109 (397)
T ss_dssp ECCCEEEEECCCEEEEEEEEEEEETT
T ss_pred ccceEEEEEeecCCeeEEEEEEecCC
Confidence 1357789999988899998887653
No 76
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=96.67 E-value=0.00092 Score=64.94 Aligned_cols=44 Identities=48% Similarity=0.782 Sum_probs=38.9
Q ss_pred CCCCCcceeeccccccccCcChhhHHHHHHHHHHHHhhhhcccC
Q psy10366 246 NDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQSSTMSS 289 (340)
Q Consensus 246 ~dg~~~i~~~~ds~~~l~g~~q~~dr~~~~~~v~~~~~~~~~~~ 289 (340)
+||+++++|||||.+|.+++++.+++..||+.++.+|+..+.+.
T Consensus 284 ~~G~~~VlEVN~~~~P~~~~~~~~~~~~Ia~~ii~~i~~~~~~~ 327 (344)
T 2p0a_A 284 KDGRDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQLPMPG 327 (344)
T ss_dssp TTSCEEEEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHTCC---
T ss_pred CCCCEEEEEEcCCCCCcccchhhhHHHHHHHHHHHHHHHhcCcc
Confidence 57889999999999999999999999999999999998876554
No 77
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=96.41 E-value=0.0021 Score=61.54 Aligned_cols=41 Identities=51% Similarity=0.762 Sum_probs=38.6
Q ss_pred CCCCCcceeeccccccccCcChhhHHHHHHHHHHHHhhhhc
Q psy10366 246 NDGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQSST 286 (340)
Q Consensus 246 ~dg~~~i~~~~ds~~~l~g~~q~~dr~~~~~~v~~~~~~~~ 286 (340)
+||+++++|||||++|.+++++.+++..||++|+.+|++.+
T Consensus 267 ~~g~~~V~EVN~~~~P~~~~~~~~~~~~ia~~ii~~~~~~~ 307 (309)
T 1i7n_A 267 KDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMNQLL 307 (309)
T ss_dssp TTSCEEEEEEECTTCCCCSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEECCCCCCCccchhhhhHHHHHHHHHHHHHHHc
Confidence 57889999999999999999999999999999999998765
No 78
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=95.90 E-value=0.018 Score=60.35 Aligned_cols=115 Identities=14% Similarity=-0.015 Sum_probs=58.4
Q ss_pred HHHHHHHhC--CCcccCChhHHHHcCCchHHHHHHHHHHHHcCCCCCCcccccccCCCccc--ccEEEecCCCCcccceE
Q psy10366 11 NLLLGFNIG--GIPSINTLQGVYNFQDKPWVFAHLLQLQRKLGKENFPLIDITYYPNFKEM--YPVVFKIGHAHSGFGKV 86 (340)
Q Consensus 11 ~vl~~le~~--GvpviNs~~aI~~~~DK~~~~~~l~~ll~~~G~~~~P~~~~t~~~~~~~~--~PvVvKp~~Gs~G~Gv~ 86 (340)
.++.+|+.. .+.+||++.++. ..+|. .+ -+|-..-. .-|....|++.....+ -..|+||..|..|.||.
T Consensus 487 ~~~~~l~~~~~~v~~ieP~wk~L-lsNKa----iL-alLW~l~p-~hp~LLpt~f~~~~~~~~~~yV~KPi~gReG~nV~ 559 (652)
T 2vob_A 487 RLCDLLLGDDWEILYFEPMWKVI-PSNKA----IL-PMIYHNHP-EHPAILKAEYELTDELRKHGYAKKPIVGRVGSNVI 559 (652)
T ss_dssp CHHHHHSSSCTTSEEESCGGGGT-TTSTT----HH-HHHHHHCT-TCTTBCCEESSCCHHHHHHCEEEEECC--------
T ss_pred HHHHHHhcCCCceEEeChhHHHh-hcCHH----HH-HHHHhccc-CCCCCCchhhcCCCccccCCeEeccCCCCCCCCEE
Confidence 477888888 999999999864 57892 22 22333210 1243444554332222 46999999999999999
Q ss_pred EecChhhHHHHHHHHHh--hCceEEeecCCC-CCC-----cEEEEEECCeEEE-EEEE
Q psy10366 87 RVESNQDFQDMAGVVAV--ANTYCTTEPYID-SKF-----DVHVQKIGSNYKA-FQRK 135 (340)
Q Consensus 87 lv~~~~~l~~i~~~l~~--~~~~~~vQefI~-~g~-----DIRv~VIG~~v~A-~~R~ 135 (340)
+.+...+. +...... .+.|+ +|+|++ +.. =|=+++|||++.+ +.|.
T Consensus 560 I~~~~~~~--~~~~~g~y~~~~~I-yQe~~~lp~f~~~~~~iG~~lvg~~~aGi~iR~ 614 (652)
T 2vob_A 560 ITSGDGVV--HAESGGKYGKRNMI-YQQLFELKKQDDYYAIIGGWMIGDAFSGTGIRE 614 (652)
T ss_dssp ---------------------CEE-EEECCC--CBTTBCCEEEEEEETTEEEEEEEEC
T ss_pred EEcCCchh--hhhcccccCCCCeE-EEecccCCccCCcceEEEEEEECCEEEEEEEec
Confidence 98753321 1222221 23555 588998 433 4889999999865 5674
No 79
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=95.75 E-value=0.0057 Score=60.97 Aligned_cols=40 Identities=48% Similarity=0.885 Sum_probs=37.1
Q ss_pred CCCCcceeeccccccccCcChhhHHHHHHHHHHHHhhhhc
Q psy10366 247 DGKEHIIEVNDSALSLMGETQEEDRRFIVDLVIQKMQSST 286 (340)
Q Consensus 247 dg~~~i~~~~ds~~~l~g~~q~~dr~~~~~~v~~~~~~~~ 286 (340)
||+.+++|||||.+|.+++++.+++..|||+|+.+|++.+
T Consensus 380 dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~ii~~i~~~~ 419 (422)
T 1pk8_A 380 DGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQAL 419 (422)
T ss_dssp TSCEEEEEEECTTCCCCTTCHHHHHHHHHHHHHHHHHCC-
T ss_pred CCCEEEEEECCCCCCCccchhhhHHHHHHHHHHHHHHHhc
Confidence 5888999999999999999999999999999999998765
No 80
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=76.23 E-value=4.7 Score=39.83 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=53.4
Q ss_pred cc-EEEecCCCCcccceEEecChhhHHHHHHHHHh-----h----CceEEeecCCCC-----C--CcEEEEEECCeEE-E
Q psy10366 70 YP-VVFKIGHAHSGFGKVRVESNQDFQDMAGVVAV-----A----NTYCTTEPYIDS-----K--FDVHVQKIGSNYK-A 131 (340)
Q Consensus 70 ~P-vVvKp~~Gs~G~Gv~lv~~~~~l~~i~~~l~~-----~----~~~~~vQefI~~-----g--~DIRv~VIG~~v~-A 131 (340)
.| ||||--.|+-|+||+-|.+.+++..+-.--+. . -.-+++||=|.. + ..-=|+.||+.++ +
T Consensus 277 ~PfV~VKADaGTYGMGImtV~s~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVYmid~~vvGg 356 (432)
T 3k1t_A 277 EPFVIVKADAGTYGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVILQEGVYTFEHLKDAVAEPVIYMMDHFVVGG 356 (432)
T ss_dssp CCCEEEEEECGGGCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCCCEEEEEECCCCCEEETTEEEEEEEEEETTEEEEE
T ss_pred CceEEEEcCCCCCCceEEEecCHHHHHHHhHHhhhhhhhccCCCccceEEEecCcchhhhhCCccccceEEEECCEEEEE
Confidence 46 89999999999999999999987665443221 1 145778998873 1 3566888999986 5
Q ss_pred EEEEecCCCccccc
Q psy10366 132 FQRKSISGNWKTNT 145 (340)
Q Consensus 132 ~~R~s~~~~WktNv 145 (340)
++|.-...+=--|+
T Consensus 357 FyRvh~~rg~dENL 370 (432)
T 3k1t_A 357 FYRVHTSRGADENL 370 (432)
T ss_dssp EEEEESCCSTTTTT
T ss_pred EEEecCCCCCccCC
Confidence 88874333344454
No 81
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=59.19 E-value=6.4 Score=39.59 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=22.9
Q ss_pred CCcEEEEeEEEcCCCCeEEEeecCC
Q psy10366 172 GLDICALEIIVGKDGKEHIIEVNDS 196 (340)
Q Consensus 172 GldiaGVDll~~~dG~~~VlEVN~s 196 (340)
=+.|+|+|++++.||+++|||-|.-
T Consensus 141 ~~~i~~~Dl~r~~dG~~~vlEdn~~ 165 (474)
T 3n6x_A 141 YAHIAGVDLVRTGENDFYVLEDNLR 165 (474)
T ss_dssp SCSEEEEEEEECSSSCEEEEEEECS
T ss_pred EEEEEEEEEEECCCCCEEEEEeCCC
Confidence 3689999999999999999999985
No 82
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=51.18 E-value=16 Score=39.15 Aligned_cols=59 Identities=10% Similarity=-0.081 Sum_probs=37.6
Q ss_pred ccEEEec--CCCCccc--ceEEecChhhHHHHHHHHHhh--C--------ceEEeecCCCC--CCcEEEEEECCe
Q psy10366 70 YPVVFKI--GHAHSGF--GKVRVESNQDFQDMAGVVAVA--N--------TYCTTEPYIDS--KFDVHVQKIGSN 128 (340)
Q Consensus 70 ~PvVvKp--~~Gs~G~--Gv~lv~~~~~l~~i~~~l~~~--~--------~~~~vQefI~~--g~DIRv~VIG~~ 128 (340)
+|+|||+ ..|+.|+ ||.+..|.+++......+... + .-+++|++++. ++-+.+-+.-|+
T Consensus 53 ~pvVvKaQv~~GgRGKaGGVkL~~s~eEa~~aa~~iLg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr 127 (829)
T 3pff_A 53 QNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATR 127 (829)
T ss_dssp SCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEET
T ss_pred CCEEEEecccccCCCcCCeEEEECCHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEecccCCCccEEEEEEEecC
Confidence 7999998 4455554 567888988877766543211 0 23678998863 466666655444
No 83
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=48.50 E-value=18 Score=35.75 Aligned_cols=59 Identities=10% Similarity=-0.041 Sum_probs=38.3
Q ss_pred ccEEEecCC--CCccc--ceEEecChhhHHHHHHHHHhh-C---------ceEEeecCCCC--CCcEEEEEECCe
Q psy10366 70 YPVVFKIGH--AHSGF--GKVRVESNQDFQDMAGVVAVA-N---------TYCTTEPYIDS--KFDVHVQKIGSN 128 (340)
Q Consensus 70 ~PvVvKp~~--Gs~G~--Gv~lv~~~~~l~~i~~~l~~~-~---------~~~~vQefI~~--g~DIRv~VIG~~ 128 (340)
+|+|+|+-. ||.|. ||.+..+.+++......+... . ..+++|+++.. ++.+.+-+.-++
T Consensus 53 ~pvVvKaqv~~ggRgk~GGV~l~~s~eev~~aa~~ml~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr 127 (425)
T 3mwd_A 53 QNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATR 127 (425)
T ss_dssp SCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEET
T ss_pred CCEEEEeccccCCCCcCCeEEEECCHHHHHHHHHHHHhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecC
Confidence 799999854 55555 778888888877765543211 0 23678998863 466666555444
No 84
>3v2c_Y Ribosome-associated inhibitor A; RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome-inhibitor; 2.70A {Escherichia coli k-12} PDB: 3v2e_Y 1n3g_A 1l4s_A 1voq_a 1vos_a 1vov_a 1vox_a 1voz_a
Probab=30.90 E-value=71 Score=25.69 Aligned_cols=73 Identities=12% Similarity=0.141 Sum_probs=47.4
Q ss_pred ecCCChHHHHHHHHHHHHhC--CCcEEEEeEEEcCCCCeEEEeecCCcccccc---cchhHHHHHHHHHHHHHHHhhcC
Q psy10366 152 QIPMTDHYKLWIDEVAELFG--GLDICALEIIVGKDGKEHIIEVNDSALSLMG---ETQEEDRRFIVDLVIQKMQVSVL 225 (340)
Q Consensus 152 ~~~~~ee~~~~a~~aa~a~~--GldiaGVDll~~~dG~~~VlEVN~s~~P~~~---g~~~~~~~~IA~~vi~~i~~~~~ 225 (340)
.+++++.+++.+.+-...+. --++..+++..+.++..+.+||.-. +||-. .-...+--.-.+.++++++++++
T Consensus 9 ~ievt~alr~~ve~Kl~kL~k~~d~i~~~~V~ls~e~~~~~veiti~-~~G~~l~ae~~~~D~yaAID~a~dkLerQLr 86 (119)
T 3v2c_Y 9 QMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATIN-TPNGVLVASGKHEDMYTAINELINKLERQLN 86 (119)
T ss_dssp TSCCCHHHHHHHHHHGGGGGGGCCCCEEEEEEEECCSSCEEEEEEEE-ETTEEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEeCCCEEEEEEEE-cCCceEEEEEcCCCHHHHHHHHHHHHHHHHH
Confidence 47899999998876533221 2367899999988777799999863 44421 11124444555666777776665
No 85
>4fyl_A Ribosome hibernation protein YHBH; beta-alpha-beta-BETA-beta-alpha secondary structure fold SIM YFIA of E. coli; HET: FME; 1.60A {Vibrio cholerae}
Probab=22.38 E-value=2.1e+02 Score=21.60 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=47.6
Q ss_pred ecCCChHHHHHHHHHHHHhC--CCcEEEEeEEEcCCCCeEEEeecCCccccccc---chhHHHHHHHHHHHHHHHhhcC
Q psy10366 152 QIPMTDHYKLWIDEVAELFG--GLDICALEIIVGKDGKEHIIEVNDSALSLMGE---TQEEDRRFIVDLVIQKMQVSVL 225 (340)
Q Consensus 152 ~~~~~ee~~~~a~~aa~a~~--GldiaGVDll~~~dG~~~VlEVN~s~~P~~~g---~~~~~~~~IA~~vi~~i~~~~~ 225 (340)
.+++++.+++.+.+-...+. --++..+++..+.++....+||+-. +||..= -+.++--.-.+.++++++++++
T Consensus 9 ~i~vt~al~~~v~~Kl~kl~k~~~~i~~~~V~l~~e~~~~~vei~i~-~~g~~l~a~~~~~d~y~AiD~a~dklerQlr 86 (95)
T 4fyl_A 9 HIDLTDSMQDYVHSKFDKLERFFDHINHVQVILRVEKLRQIAEATLH-VNQAEIHAHADDENMYAAIDSLVDKLVRQLN 86 (95)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEETTEEEEEEEEE-ETTEEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEecCcEEEEEEEE-eCCcEEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 47899999888887544333 2378899998887777789999863 344321 1123444455667777776654
No 86
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=22.06 E-value=68 Score=24.93 Aligned_cols=73 Identities=10% Similarity=0.099 Sum_probs=43.2
Q ss_pred ecCCChHHHHHHHHHHHHhC--CCcEEEEeEEEcCCCCeEEEeecCCcccccc---cchhHHHHHHHHHHHHHHHhhcC
Q psy10366 152 QIPMTDHYKLWIDEVAELFG--GLDICALEIIVGKDGKEHIIEVNDSALSLMG---ETQEEDRRFIVDLVIQKMQVSVL 225 (340)
Q Consensus 152 ~~~~~ee~~~~a~~aa~a~~--GldiaGVDll~~~dG~~~VlEVN~s~~P~~~---g~~~~~~~~IA~~vi~~i~~~~~ 225 (340)
.+++++.+++.+.+-...+. --++..+++..+.++..+.+||.-. +||-. .-+.++--.-.+.++++++++++
T Consensus 9 ~ie~t~alr~~ve~Kl~kL~k~~d~i~~~~V~l~~e~~~~~~eitv~-~~G~~l~ae~~~~d~yaAID~a~dkLerQLr 86 (101)
T 3v26_X 9 NVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLH-VNGGEIHASAEGQDMYAAIDGLIDKLARQLT 86 (101)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTCSCCCCEEEEEEECSSCEEEEEEEC-STTCCEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEcCCCEEEEEEEE-cCCceEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 37889999888876433332 2266788888876655688888863 34421 11123333344555666665543
No 87
>2ywq_A Protein Y, ribosomal subunit interface protein; sigma-54 modulation protein family, structural genomics; 2.64A {Thermus thermophilus} SCOP: d.204.1.1
Probab=22.01 E-value=1.2e+02 Score=23.38 Aligned_cols=73 Identities=12% Similarity=0.185 Sum_probs=45.3
Q ss_pred ecCCChHHHHHHHHHHHHhC--CCcEEEEeEEEcCCCC-----eEEEeecCCccccc---ccchhHHHHHHHHHHHHHHH
Q psy10366 152 QIPMTDHYKLWIDEVAELFG--GLDICALEIIVGKDGK-----EHIIEVNDSALSLM---GETQEEDRRFIVDLVIQKMQ 221 (340)
Q Consensus 152 ~~~~~ee~~~~a~~aa~a~~--GldiaGVDll~~~dG~-----~~VlEVN~s~~P~~---~g~~~~~~~~IA~~vi~~i~ 221 (340)
.+++++.+++.+.+-...+. --++..+++..+.++. .+.|||.-. +||. ..-..++--.-.+.++++++
T Consensus 10 ~i~~t~al~~~v~~kl~kL~r~~~~i~~~~V~l~~e~~~~~~~~~~~eitv~-~~g~~l~a~~~~~d~y~Aid~a~dkle 88 (105)
T 2ywq_A 10 NLEITDAIRDYVEKKLARLDRYQDGELMAKVVLSLAGSPHVEKKARAEIQVD-LPGGLVRVEEEDADLYAAIDRAVDRLE 88 (105)
T ss_dssp TSCCCHHHHHHHHHHHHGGGGSCSSCCEEEEEEEECC------CEEEEEEEE-ETTEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEecCCCCCCceEEEEEEE-cCCcEEEEEEccCCHHHHHHHHHHHHH
Confidence 37899999999987544332 2256788888764433 578887753 3332 11223455556667778887
Q ss_pred hhcC
Q psy10366 222 VSVL 225 (340)
Q Consensus 222 ~~~~ 225 (340)
++++
T Consensus 89 rqL~ 92 (105)
T 2ywq_A 89 TQVK 92 (105)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 88
>3tqm_A Ribosome-associated factor Y; protein synthesis, protein binding; 2.45A {Coxiella burnetii}
Probab=20.51 E-value=71 Score=24.30 Aligned_cols=73 Identities=15% Similarity=0.228 Sum_probs=46.4
Q ss_pred ecCCChHHHHHHHHHHHHhC--CCcEEEEeEEEcCCCCeEEEeecCCcccccc---cchhHHHHHHHHHHHHHHHhhcC
Q psy10366 152 QIPMTDHYKLWIDEVAELFG--GLDICALEIIVGKDGKEHIIEVNDSALSLMG---ETQEEDRRFIVDLVIQKMQVSVL 225 (340)
Q Consensus 152 ~~~~~ee~~~~a~~aa~a~~--GldiaGVDll~~~dG~~~VlEVN~s~~P~~~---g~~~~~~~~IA~~vi~~i~~~~~ 225 (340)
.+++++.+++.+.+-...+. --++..+++..+.++..+.+||.-. +||.. .-..++--.-.+.++++++++++
T Consensus 9 ~i~~t~al~~~v~~kl~kL~k~~~~i~~~~V~l~~e~~~~~~ei~i~-~~g~~l~a~~~~~d~y~Aid~a~dklerqL~ 86 (96)
T 3tqm_A 9 GVDISPALRELTEKKLHRIQPCRDEISNIHIIFHINKLKKIVDANVK-LPGSTINAQAESDDMYKTVDLLMHKLETQLS 86 (96)
T ss_dssp SSCCCHHHHHHHHHHHTTCCSSGGGCCEEEEEEEEETTEEEEEEEEE-ETTEEEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEeCCceEEEEEEE-eCCcEEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 48899999999887544332 1256788988886666789998863 34431 11223444555667777776654
Done!